valuesets 0.3.1__py3-none-any.whl

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  1. valuesets/__init__.py +7 -0
  2. valuesets/_version.py +8 -0
  3. valuesets/datamodel/valuesets.py +13796 -0
  4. valuesets/datamodel/valuesets_dataclass.py +24503 -0
  5. valuesets/datamodel/valuesets_pydantic.py +13796 -0
  6. valuesets/enums/__init__.py +590 -0
  7. valuesets/enums/academic/__init__.py +1 -0
  8. valuesets/enums/academic/research.py +559 -0
  9. valuesets/enums/analytical_chemistry/__init__.py +1 -0
  10. valuesets/enums/analytical_chemistry/mass_spectrometry.py +198 -0
  11. valuesets/enums/bio/__init__.py +1 -0
  12. valuesets/enums/bio/biological_colors.py +238 -0
  13. valuesets/enums/bio/cell_cycle.py +180 -0
  14. valuesets/enums/bio/currency_chemicals.py +52 -0
  15. valuesets/enums/bio/developmental_stages.py +103 -0
  16. valuesets/enums/bio/genome_features.py +182 -0
  17. valuesets/enums/bio/genomics.py +91 -0
  18. valuesets/enums/bio/go_aspect.py +32 -0
  19. valuesets/enums/bio/go_causality.py +58 -0
  20. valuesets/enums/bio/go_evidence.py +129 -0
  21. valuesets/enums/bio/human_developmental_stages.py +62 -0
  22. valuesets/enums/bio/insdc_geographic_locations.py +591 -0
  23. valuesets/enums/bio/insdc_missing_values.py +49 -0
  24. valuesets/enums/bio/lipid_categories.py +67 -0
  25. valuesets/enums/bio/mouse_developmental_stages.py +62 -0
  26. valuesets/enums/bio/plant_biology.py +86 -0
  27. valuesets/enums/bio/plant_developmental_stages.py +54 -0
  28. valuesets/enums/bio/plant_sex.py +81 -0
  29. valuesets/enums/bio/protein_evidence.py +61 -0
  30. valuesets/enums/bio/proteomics_standards.py +123 -0
  31. valuesets/enums/bio/psi_mi.py +306 -0
  32. valuesets/enums/bio/relationship_to_oxygen.py +37 -0
  33. valuesets/enums/bio/sequence_alphabets.py +449 -0
  34. valuesets/enums/bio/sequence_chemistry.py +357 -0
  35. valuesets/enums/bio/sequencing_platforms.py +302 -0
  36. valuesets/enums/bio/structural_biology.py +320 -0
  37. valuesets/enums/bio/taxonomy.py +238 -0
  38. valuesets/enums/bio/trophic_levels.py +85 -0
  39. valuesets/enums/bio/uniprot_species.py +344 -0
  40. valuesets/enums/bio/viral_genome_types.py +47 -0
  41. valuesets/enums/bioprocessing/__init__.py +1 -0
  42. valuesets/enums/bioprocessing/scale_up.py +249 -0
  43. valuesets/enums/business/__init__.py +1 -0
  44. valuesets/enums/business/human_resources.py +275 -0
  45. valuesets/enums/business/industry_classifications.py +181 -0
  46. valuesets/enums/business/management_operations.py +228 -0
  47. valuesets/enums/business/organizational_structures.py +236 -0
  48. valuesets/enums/business/quality_management.py +181 -0
  49. valuesets/enums/business/supply_chain.py +232 -0
  50. valuesets/enums/chemistry/__init__.py +1 -0
  51. valuesets/enums/chemistry/chemical_entities.py +315 -0
  52. valuesets/enums/chemistry/reaction_directionality.py +65 -0
  53. valuesets/enums/chemistry/reactions.py +256 -0
  54. valuesets/enums/clinical/__init__.py +1 -0
  55. valuesets/enums/clinical/nih_demographics.py +177 -0
  56. valuesets/enums/clinical/phenopackets.py +254 -0
  57. valuesets/enums/common_value_sets.py +8791 -0
  58. valuesets/enums/computing/__init__.py +1 -0
  59. valuesets/enums/computing/file_formats.py +294 -0
  60. valuesets/enums/computing/maturity_levels.py +196 -0
  61. valuesets/enums/computing/mime_types.py +227 -0
  62. valuesets/enums/confidence_levels.py +168 -0
  63. valuesets/enums/contributor.py +30 -0
  64. valuesets/enums/core.py +42 -0
  65. valuesets/enums/data/__init__.py +1 -0
  66. valuesets/enums/data/data_absent_reason.py +53 -0
  67. valuesets/enums/data_science/__init__.py +1 -0
  68. valuesets/enums/data_science/binary_classification.py +87 -0
  69. valuesets/enums/data_science/emotion_classification.py +66 -0
  70. valuesets/enums/data_science/priority_severity.py +73 -0
  71. valuesets/enums/data_science/quality_control.py +46 -0
  72. valuesets/enums/data_science/sentiment_analysis.py +50 -0
  73. valuesets/enums/data_science/text_classification.py +97 -0
  74. valuesets/enums/demographics.py +206 -0
  75. valuesets/enums/ecological_interactions.py +151 -0
  76. valuesets/enums/energy/__init__.py +1 -0
  77. valuesets/enums/energy/energy.py +343 -0
  78. valuesets/enums/energy/fossil_fuels.py +29 -0
  79. valuesets/enums/energy/nuclear/__init__.py +1 -0
  80. valuesets/enums/energy/nuclear/nuclear_facilities.py +195 -0
  81. valuesets/enums/energy/nuclear/nuclear_fuel_cycle.py +96 -0
  82. valuesets/enums/energy/nuclear/nuclear_fuels.py +175 -0
  83. valuesets/enums/energy/nuclear/nuclear_operations.py +191 -0
  84. valuesets/enums/energy/nuclear/nuclear_regulatory.py +188 -0
  85. valuesets/enums/energy/nuclear/nuclear_safety.py +164 -0
  86. valuesets/enums/energy/nuclear/nuclear_waste.py +158 -0
  87. valuesets/enums/energy/nuclear/reactor_types.py +163 -0
  88. valuesets/enums/environmental_health/__init__.py +1 -0
  89. valuesets/enums/environmental_health/exposures.py +265 -0
  90. valuesets/enums/geography/__init__.py +1 -0
  91. valuesets/enums/geography/geographic_codes.py +741 -0
  92. valuesets/enums/health/__init__.py +12 -0
  93. valuesets/enums/health/vaccination.py +98 -0
  94. valuesets/enums/health.py +36 -0
  95. valuesets/enums/health_base.py +36 -0
  96. valuesets/enums/healthcare.py +45 -0
  97. valuesets/enums/industry/__init__.py +1 -0
  98. valuesets/enums/industry/extractive_industry.py +94 -0
  99. valuesets/enums/industry/mining.py +388 -0
  100. valuesets/enums/industry/safety_colors.py +201 -0
  101. valuesets/enums/investigation.py +27 -0
  102. valuesets/enums/materials_science/__init__.py +1 -0
  103. valuesets/enums/materials_science/characterization_methods.py +112 -0
  104. valuesets/enums/materials_science/crystal_structures.py +76 -0
  105. valuesets/enums/materials_science/material_properties.py +119 -0
  106. valuesets/enums/materials_science/material_types.py +104 -0
  107. valuesets/enums/materials_science/pigments_dyes.py +198 -0
  108. valuesets/enums/materials_science/synthesis_methods.py +109 -0
  109. valuesets/enums/medical/__init__.py +1 -0
  110. valuesets/enums/medical/clinical.py +277 -0
  111. valuesets/enums/medical/neuroimaging.py +119 -0
  112. valuesets/enums/mining_processing.py +302 -0
  113. valuesets/enums/physics/__init__.py +1 -0
  114. valuesets/enums/physics/states_of_matter.py +46 -0
  115. valuesets/enums/social/__init__.py +1 -0
  116. valuesets/enums/social/person_status.py +29 -0
  117. valuesets/enums/spatial/__init__.py +1 -0
  118. valuesets/enums/spatial/spatial_qualifiers.py +246 -0
  119. valuesets/enums/statistics/__init__.py +5 -0
  120. valuesets/enums/statistics/prediction_outcomes.py +31 -0
  121. valuesets/enums/statistics.py +31 -0
  122. valuesets/enums/time/__init__.py +1 -0
  123. valuesets/enums/time/temporal.py +254 -0
  124. valuesets/enums/units/__init__.py +1 -0
  125. valuesets/enums/units/measurements.py +310 -0
  126. valuesets/enums/visual/__init__.py +1 -0
  127. valuesets/enums/visual/colors.py +376 -0
  128. valuesets/generators/__init__.py +19 -0
  129. valuesets/generators/auto_slot_injector.py +280 -0
  130. valuesets/generators/enhanced_pydantic_generator.py +100 -0
  131. valuesets/generators/enum_slot_generator.py +201 -0
  132. valuesets/generators/modular_rich_generator.py +353 -0
  133. valuesets/generators/prefix_standardizer.py +198 -0
  134. valuesets/generators/rich_enum.py +127 -0
  135. valuesets/generators/rich_pydantic_generator.py +310 -0
  136. valuesets/generators/smart_slot_syncer.py +428 -0
  137. valuesets/generators/sssom_generator.py +394 -0
  138. valuesets/merged/merged_hierarchy.yaml +21649 -0
  139. valuesets/schema/README.md +3 -0
  140. valuesets/schema/academic/research.yaml +911 -0
  141. valuesets/schema/analytical_chemistry/mass_spectrometry.yaml +206 -0
  142. valuesets/schema/bio/bio_entities.yaml +364 -0
  143. valuesets/schema/bio/biological_colors.yaml +434 -0
  144. valuesets/schema/bio/cell_cycle.yaml +309 -0
  145. valuesets/schema/bio/currency_chemicals.yaml +70 -0
  146. valuesets/schema/bio/developmental_stages.yaml +226 -0
  147. valuesets/schema/bio/genome_features.yaml +342 -0
  148. valuesets/schema/bio/genomics.yaml +101 -0
  149. valuesets/schema/bio/go_aspect.yaml +39 -0
  150. valuesets/schema/bio/go_causality.yaml +119 -0
  151. valuesets/schema/bio/go_evidence.yaml +215 -0
  152. valuesets/schema/bio/insdc_geographic_locations.yaml +911 -0
  153. valuesets/schema/bio/insdc_missing_values.yaml +85 -0
  154. valuesets/schema/bio/lipid_categories.yaml +72 -0
  155. valuesets/schema/bio/plant_biology.yaml +125 -0
  156. valuesets/schema/bio/plant_developmental_stages.yaml +77 -0
  157. valuesets/schema/bio/plant_sex.yaml +108 -0
  158. valuesets/schema/bio/protein_evidence.yaml +63 -0
  159. valuesets/schema/bio/proteomics_standards.yaml +116 -0
  160. valuesets/schema/bio/psi_mi.yaml +400 -0
  161. valuesets/schema/bio/relationship_to_oxygen.yaml +46 -0
  162. valuesets/schema/bio/sequence_alphabets.yaml +1168 -0
  163. valuesets/schema/bio/sequence_chemistry.yaml +477 -0
  164. valuesets/schema/bio/sequencing_platforms.yaml +515 -0
  165. valuesets/schema/bio/structural_biology.yaml +428 -0
  166. valuesets/schema/bio/taxonomy.yaml +453 -0
  167. valuesets/schema/bio/trophic_levels.yaml +118 -0
  168. valuesets/schema/bio/uniprot_species.yaml +1209 -0
  169. valuesets/schema/bio/viral_genome_types.yaml +99 -0
  170. valuesets/schema/bioprocessing/scale_up.yaml +458 -0
  171. valuesets/schema/business/human_resources.yaml +752 -0
  172. valuesets/schema/business/industry_classifications.yaml +448 -0
  173. valuesets/schema/business/management_operations.yaml +602 -0
  174. valuesets/schema/business/organizational_structures.yaml +645 -0
  175. valuesets/schema/business/quality_management.yaml +502 -0
  176. valuesets/schema/business/supply_chain.yaml +688 -0
  177. valuesets/schema/chemistry/chemical_entities.yaml +639 -0
  178. valuesets/schema/chemistry/reaction_directionality.yaml +60 -0
  179. valuesets/schema/chemistry/reactions.yaml +442 -0
  180. valuesets/schema/clinical/nih_demographics.yaml +285 -0
  181. valuesets/schema/clinical/phenopackets.yaml +429 -0
  182. valuesets/schema/computing/file_formats.yaml +631 -0
  183. valuesets/schema/computing/maturity_levels.yaml +229 -0
  184. valuesets/schema/computing/mime_types.yaml +266 -0
  185. valuesets/schema/confidence_levels.yaml +206 -0
  186. valuesets/schema/contributor.yaml +30 -0
  187. valuesets/schema/core.yaml +55 -0
  188. valuesets/schema/data/data_absent_reason.yaml +82 -0
  189. valuesets/schema/data_science/binary_classification.yaml +125 -0
  190. valuesets/schema/data_science/emotion_classification.yaml +109 -0
  191. valuesets/schema/data_science/priority_severity.yaml +122 -0
  192. valuesets/schema/data_science/quality_control.yaml +68 -0
  193. valuesets/schema/data_science/sentiment_analysis.yaml +81 -0
  194. valuesets/schema/data_science/text_classification.yaml +135 -0
  195. valuesets/schema/demographics.yaml +238 -0
  196. valuesets/schema/ecological_interactions.yaml +298 -0
  197. valuesets/schema/energy/energy.yaml +595 -0
  198. valuesets/schema/energy/fossil_fuels.yaml +28 -0
  199. valuesets/schema/energy/nuclear/nuclear_facilities.yaml +463 -0
  200. valuesets/schema/energy/nuclear/nuclear_fuel_cycle.yaml +82 -0
  201. valuesets/schema/energy/nuclear/nuclear_fuels.yaml +421 -0
  202. valuesets/schema/energy/nuclear/nuclear_operations.yaml +480 -0
  203. valuesets/schema/energy/nuclear/nuclear_regulatory.yaml +200 -0
  204. valuesets/schema/energy/nuclear/nuclear_safety.yaml +352 -0
  205. valuesets/schema/energy/nuclear/nuclear_waste.yaml +332 -0
  206. valuesets/schema/energy/nuclear/reactor_types.yaml +394 -0
  207. valuesets/schema/environmental_health/exposures.yaml +355 -0
  208. valuesets/schema/generated_slots.yaml +1828 -0
  209. valuesets/schema/geography/geographic_codes.yaml +1018 -0
  210. valuesets/schema/health/vaccination.yaml +102 -0
  211. valuesets/schema/health.yaml +38 -0
  212. valuesets/schema/healthcare.yaml +53 -0
  213. valuesets/schema/industry/extractive_industry.yaml +89 -0
  214. valuesets/schema/industry/mining.yaml +888 -0
  215. valuesets/schema/industry/safety_colors.yaml +375 -0
  216. valuesets/schema/investigation.yaml +64 -0
  217. valuesets/schema/materials_science/characterization_methods.yaml +193 -0
  218. valuesets/schema/materials_science/crystal_structures.yaml +138 -0
  219. valuesets/schema/materials_science/material_properties.yaml +135 -0
  220. valuesets/schema/materials_science/material_types.yaml +151 -0
  221. valuesets/schema/materials_science/pigments_dyes.yaml +465 -0
  222. valuesets/schema/materials_science/synthesis_methods.yaml +186 -0
  223. valuesets/schema/medical/clinical.yaml +610 -0
  224. valuesets/schema/medical/neuroimaging.yaml +325 -0
  225. valuesets/schema/mining_processing.yaml +295 -0
  226. valuesets/schema/physics/states_of_matter.yaml +46 -0
  227. valuesets/schema/slot_mixins.yaml +143 -0
  228. valuesets/schema/social/person_status.yaml +28 -0
  229. valuesets/schema/spatial/spatial_qualifiers.yaml +466 -0
  230. valuesets/schema/statistics/prediction_outcomes.yaml +26 -0
  231. valuesets/schema/statistics.yaml +34 -0
  232. valuesets/schema/time/temporal.yaml +435 -0
  233. valuesets/schema/types.yaml +15 -0
  234. valuesets/schema/units/measurements.yaml +675 -0
  235. valuesets/schema/valuesets.yaml +100 -0
  236. valuesets/schema/visual/colors.yaml +778 -0
  237. valuesets/utils/__init__.py +6 -0
  238. valuesets/utils/comparison.py +102 -0
  239. valuesets/utils/expand_dynamic_enums.py +414 -0
  240. valuesets/utils/mapping_utils.py +236 -0
  241. valuesets/validators/__init__.py +11 -0
  242. valuesets/validators/enum_evaluator.py +669 -0
  243. valuesets/validators/oak_config.yaml +70 -0
  244. valuesets/validators/validate_with_ols.py +241 -0
  245. valuesets-0.3.1.dist-info/METADATA +395 -0
  246. valuesets-0.3.1.dist-info/RECORD +248 -0
  247. valuesets-0.3.1.dist-info/WHEEL +4 -0
  248. valuesets-0.3.1.dist-info/licenses/LICENSE +201 -0
@@ -0,0 +1,1828 @@
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+ name: generated_slots
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+ title: Auto-generated Slots for Value Sets
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+ description: Automatically generated slot definitions for all enums in the value sets collection.
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+ id: https://w3id.org/valuesets/generated-slots
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+ version: 1.0.0
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+ status: release
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+ imports:
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+ - linkml:types
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+ prefixes:
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+ linkml: https://w3id.org/linkml/
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+ # cval: https://w3id.org/linkml-common/
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+ valuesets: https://w3id.org/valuesets/
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+ default_prefix: valuesets
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+ default_curi_maps:
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+ - semweb_context
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+ slots:
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+ education_level:
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+ description: Highest level of education completed, following NIH demographics standards
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+ range: EducationLevelEnum
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+ comments:
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+ - 'Defined in module: nih_demographics'
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+ marital_status:
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+ description: Marital or civil status of a person
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+ range: MaritalStatusEnum
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+ comments:
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+ - 'Defined in module: person_status'
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+ employment_status:
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+ description: Employment status of a person
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+ range: EmploymentStatusEnum
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+ comments:
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+ - 'Defined in module: person_status'
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+ housing_status:
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+ description: Housing status of patients per UDS Plus HRSA standards
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+ range: HousingStatus
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+ comments:
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+ - 'Defined in module: valuesets-demographics'
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+ gender_identity:
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+ description: Current gender identity, which may differ from sex assigned at birth
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+ range: GenderIdentityEnum
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+ comments:
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+ - 'Defined in module: nih_demographics'
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+ omb_race_category:
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+ description: Office of Management and Budget (OMB) race category codes
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+ range: OmbRaceCategory
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+ comments:
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+ - 'Defined in module: valuesets-demographics'
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+ omb_ethnicity_category:
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+ description: Office of Management and Budget (OMB) ethnicity category codes
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+ range: OmbEthnicityCategory
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+ comments:
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+ - 'Defined in module: valuesets-demographics'
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+ biotic_interaction:
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+ description: Types of biotic interactions between organisms, based on RO:0002437 (biotically interacts with)
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+ range: BioticInteractionType
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+ comments:
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+ - 'Defined in module: ecological_interactions'
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+ prediction_outcome:
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+ description: The prediction outcome classification
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+ range: PredictionOutcomeType
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+ comments:
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+ - 'Defined in module: valuesets-statistics'
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+ vital_status:
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+ description: The vital status of a person or organism
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+ range: VitalStatusEnum
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+ comments:
66
+ - 'Defined in module: valuesets-health'
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+ healthcare_encounter_classification:
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+ description: The healthcare encounter classification classification
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+ range: HealthcareEncounterClassification
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+ comments:
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+ - 'Defined in module: valuesets-healthcare'
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+ confidence_level:
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+ description: Confidence levels for predictions and classifications
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+ range: ConfidenceLevelEnum
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+ comments:
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+ - 'Defined in module: priority_severity'
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+ cio_confidence_level:
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+ description: Confidence levels from the Confidence Information Ontology (CIO), representing different levels of trust
79
+ in evidence
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+ range: CIOConfidenceLevel
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+ comments:
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+ - 'Defined in module: confidence_levels'
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+ obcs_certainty_level:
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+ description: Certainty levels from the Ontology of Biological and Clinical Statistics (OBCS)
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+ range: OBCSCertaintyLevel
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+ comments:
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+ - 'Defined in module: confidence_levels'
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+ ipcc_likelihood_scale:
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+ description: IPCC (Intergovernmental Panel on Climate Change) standardized likelihood scale used to communicate the assessed
90
+ probability of an outcome or result
91
+ range: IPCCLikelihoodScale
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+ comments:
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+ - 'Defined in module: confidence_levels'
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+ ipcc_confidence_level:
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+ description: IPCC confidence qualifiers used to express the degree of confidence in a finding based on the type, amount,
96
+ quality, and consistency of evidence and the degree of agreement
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+ range: IPCCConfidenceLevel
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+ comments:
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+ - 'Defined in module: confidence_levels'
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+ ncit_five_point_confidence_scale:
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+ description: NCIT 5-point subjective confidence scale ranging from "Not at all confident" (1) to "Very confident" (5)
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+ range: NCITFivePointConfidenceScale
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+ comments:
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+ - 'Defined in module: confidence_levels'
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+ contributor:
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+ description: The type of contributor being represented
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+ range: ContributorType
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+ comments:
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+ - 'Defined in module: contributor'
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+ case_or_control:
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+ description: The case or control classification
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+ range: CaseOrControlEnum
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+ comments:
114
+ - 'Defined in module: valuesets-investigation'
115
+ study_design:
116
+ description: The study design classification
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+ range: StudyDesignEnum
118
+ comments:
119
+ - 'Defined in module: valuesets-investigation'
120
+ investigative_protocol:
121
+ description: The investigative protocol classification
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+ range: InvestigativeProtocolEnum
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+ comments:
124
+ - 'Defined in module: valuesets-investigation'
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+ sample_processing:
126
+ description: The sample processing classification
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+ range: SampleProcessingEnum
128
+ comments:
129
+ - 'Defined in module: valuesets-investigation'
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+ relative_time:
131
+ description: The relative time classification
132
+ range: RelativeTimeEnum
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+ comments:
134
+ - 'Defined in module: comet-core'
135
+ presence:
136
+ description: The presence classification
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+ range: PresenceEnum
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+ comments:
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+ - 'Defined in module: comet-core'
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+ mineralogy_feedstock:
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+ description: Types of mineral feedstock sources for extraction and processing operations, including primary and secondary
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+ sources
143
+ range: MineralogyFeedstockClass
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+ comments:
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+ - 'Defined in module: mining_processing'
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+ beneficiation_pathway:
147
+ description: Methods for mineral separation and concentration aligned with advanced ore processing initiatives (AOI-2)
148
+ range: BeneficiationPathway
149
+ comments:
150
+ - 'Defined in module: mining_processing'
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+ in_situ_chemistry_regime:
152
+ description: Chemical leaching systems for in-situ extraction with associated parameters including pH, Eh, temperature,
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+ and ionic strength
154
+ range: InSituChemistryRegime
155
+ comments:
156
+ - 'Defined in module: mining_processing'
157
+ extractable_target_element:
158
+ description: Target elements for extraction, particularly rare earth elements (REE) and critical minerals
159
+ range: ExtractableTargetElement
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+ multivalued: true
161
+ comments:
162
+ - Multiple extractable target elements may apply
163
+ - 'Defined in module: mining_processing'
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+ sensor_while_drilling_feature:
165
+ description: Measurement while drilling (MWD) and logging while drilling (LWD) features for orebody ML and geosteering
166
+ applications
167
+ range: SensorWhileDrillingFeature
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+ multivalued: true
169
+ comments:
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+ - Multiple sensor while drilling features may apply
171
+ - 'Defined in module: mining_processing'
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+ process_performance_metric:
173
+ description: Key performance indicators for mining and processing operations tied to SMART milestones and sustainability
174
+ goals
175
+ range: ProcessPerformanceMetric
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+ multivalued: true
177
+ comments:
178
+ - Multiple process performance metrics may apply
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+ - 'Defined in module: mining_processing'
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+ bioleach_organism:
181
+ description: Microorganisms used in bioleaching and biomining operations, including engineered strains
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+ range: BioleachOrganism
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+ comments:
184
+ - 'Defined in module: mining_processing'
185
+ bioleach_mode:
186
+ description: Mechanisms of bioleaching including indirect and direct bacterial action
187
+ range: BioleachMode
188
+ comments:
189
+ - 'Defined in module: mining_processing'
190
+ autonomy_level:
191
+ description: Levels of autonomy for mining systems including drilling, hauling, and sorting robots (relevant for Topic
192
+ 1 initiatives)
193
+ range: AutonomyLevel
194
+ comments:
195
+ - 'Defined in module: mining_processing'
196
+ regulatory_constraint:
197
+ description: Regulatory and community constraints affecting mining operations, particularly for in-situ extraction and
198
+ community engagement
199
+ range: RegulatoryConstraint
200
+ multivalued: true
201
+ comments:
202
+ - Multiple regulatory constraints may apply
203
+ - 'Defined in module: mining_processing'
204
+ outcome_type:
205
+ description: Types of prediction outcomes for classification tasks
206
+ range: OutcomeTypeEnum
207
+ comments:
208
+ - 'Defined in module: prediction_outcomes'
209
+ process_scale:
210
+ description: Scale of bioprocessing operations from lab bench to commercial production
211
+ range: ProcessScaleEnum
212
+ comments:
213
+ - 'Defined in module: scale_up'
214
+ bioreactor_type:
215
+ description: Types of bioreactors used in fermentation and cell culture
216
+ range: BioreactorTypeEnum
217
+ comments:
218
+ - 'Defined in module: scale_up'
219
+ fermentation_mode:
220
+ description: Modes of fermentation operation
221
+ range: FermentationModeEnum
222
+ comments:
223
+ - 'Defined in module: scale_up'
224
+ oxygenation_strategy:
225
+ description: Oxygen supply strategies for fermentation
226
+ range: OxygenationStrategyEnum
227
+ comments:
228
+ - 'Defined in module: scale_up'
229
+ agitation_type:
230
+ description: Types of agitation/mixing in bioreactors
231
+ range: AgitationTypeEnum
232
+ comments:
233
+ - 'Defined in module: scale_up'
234
+ downstream_process:
235
+ description: Downstream processing unit operations
236
+ range: DownstreamProcessEnum
237
+ comments:
238
+ - 'Defined in module: scale_up'
239
+ feedstock_type:
240
+ description: Types of feedstocks for bioprocessing
241
+ range: FeedstockTypeEnum
242
+ comments:
243
+ - 'Defined in module: scale_up'
244
+ product_type:
245
+ description: Types of products from bioprocessing
246
+ range: ProductTypeEnum
247
+ comments:
248
+ - 'Defined in module: scale_up'
249
+ sterilization_method:
250
+ description: Methods for sterilization in bioprocessing
251
+ range: SterilizationMethodEnum
252
+ comments:
253
+ - 'Defined in module: scale_up'
254
+ human_developmental_stage:
255
+ description: The human developmental stage classification
256
+ range: HumanDevelopmentalStage
257
+ comments:
258
+ - 'Defined in module: developmental_stages'
259
+ mouse_developmental_stage:
260
+ description: The mouse developmental stage classification
261
+ range: MouseDevelopmentalStage
262
+ comments:
263
+ - 'Defined in module: developmental_stages'
264
+ genome_feature:
265
+ description: Genome feature types from SOFA (Sequence Ontology Feature Annotation)
266
+ range: GenomeFeatureType
267
+ multivalued: true
268
+ comments:
269
+ - Multiple genome features may apply
270
+ - 'Defined in module: genome_features'
271
+ sample:
272
+ description: Types of biological samples used in structural biology
273
+ range: SampleType
274
+ comments:
275
+ - 'Defined in module: structural_biology'
276
+ structural_biology_technique:
277
+ description: Structural biology experimental techniques
278
+ range: StructuralBiologyTechnique
279
+ comments:
280
+ - 'Defined in module: structural_biology'
281
+ cryo_em_preparation:
282
+ description: Types of cryo-EM sample preparation
283
+ range: CryoEMPreparationType
284
+ comments:
285
+ - 'Defined in module: structural_biology'
286
+ cryo_em_grid:
287
+ description: Types of electron microscopy grids
288
+ range: CryoEMGridType
289
+ comments:
290
+ - 'Defined in module: structural_biology'
291
+ vitrification_method:
292
+ description: Methods for sample vitrification
293
+ range: VitrificationMethod
294
+ comments:
295
+ - 'Defined in module: structural_biology'
296
+ crystallization_method:
297
+ description: Methods for protein crystallization
298
+ range: CrystallizationMethod
299
+ comments:
300
+ - 'Defined in module: structural_biology'
301
+ x_ray_source:
302
+ description: Types of X-ray sources
303
+ range: XRaySource
304
+ comments:
305
+ - 'Defined in module: structural_biology'
306
+ detector:
307
+ description: Types of detectors for structural biology
308
+ range: Detector
309
+ comments:
310
+ - 'Defined in module: structural_biology'
311
+ workflow:
312
+ description: Types of computational processing workflows
313
+ range: WorkflowType
314
+ comments:
315
+ - 'Defined in module: structural_biology'
316
+ file_format:
317
+ description: File formats used in structural biology
318
+ range: FileFormat
319
+ comments:
320
+ - 'Defined in module: structural_biology'
321
+ data:
322
+ description: Types of structural biology data
323
+ range: DataType
324
+ comments:
325
+ - 'Defined in module: structural_biology'
326
+ processing_status:
327
+ description: Status of data processing workflows
328
+ range: ProcessingStatus
329
+ comments:
330
+ - 'Defined in module: structural_biology'
331
+ go_evidence:
332
+ description: Gene Ontology evidence codes mapped to Evidence and Conclusion Ontology (ECO) terms
333
+ range: GOEvidenceCode
334
+ comments:
335
+ - 'Defined in module: go_evidence'
336
+ go_electronic_methods:
337
+ description: Electronic annotation methods used in Gene Ontology, identified by GO_REF codes
338
+ range: GOElectronicMethods
339
+ comments:
340
+ - 'Defined in module: go_evidence'
341
+ metazoan_anatomical_structure:
342
+ description: Any anatomical structure found in metazoan organisms, including organs, tissues, and body parts
343
+ range: MetazoanAnatomicalStructure
344
+ comments:
345
+ - 'Defined in module: bio_entities'
346
+ human_anatomical_structure:
347
+ description: Anatomical structures specific to humans (Homo sapiens)
348
+ range: HumanAnatomicalStructure
349
+ comments:
350
+ - 'Defined in module: bio_entities'
351
+ plant_anatomical_structure:
352
+ description: Any anatomical structure found in plant organisms
353
+ range: PlantAnatomicalStructure
354
+ comments:
355
+ - 'Defined in module: bio_entities'
356
+ cell:
357
+ description: Any cell type from the Cell Ontology (CL), including native and experimentally modified cells
358
+ range: CellType
359
+ comments:
360
+ - 'Defined in module: bio_entities'
361
+ neuron:
362
+ description: Neuron cell types from the Cell Ontology
363
+ range: NeuronType
364
+ comments:
365
+ - 'Defined in module: bio_entities'
366
+ immune_cell:
367
+ description: Immune system cell types (leukocytes and their subtypes)
368
+ range: ImmuneCell
369
+ comments:
370
+ - 'Defined in module: bio_entities'
371
+ stem_cell:
372
+ description: Stem cell types and progenitor cells
373
+ range: StemCell
374
+ comments:
375
+ - 'Defined in module: bio_entities'
376
+ disease:
377
+ description: Human diseases from the Mondo Disease Ontology
378
+ range: Disease
379
+ comments:
380
+ - 'Defined in module: bio_entities'
381
+ infectious_disease:
382
+ description: Infectious diseases caused by pathogenic organisms
383
+ range: InfectiousDisease
384
+ comments:
385
+ - 'Defined in module: bio_entities'
386
+ cancer:
387
+ description: Neoplastic and cancerous diseases
388
+ range: Cancer
389
+ comments:
390
+ - 'Defined in module: bio_entities'
391
+ genetic_disease:
392
+ description: Hereditary and genetic diseases
393
+ range: GeneticDisease
394
+ comments:
395
+ - 'Defined in module: bio_entities'
396
+ chemical_entity:
397
+ description: Any chemical entity from ChEBI ontology
398
+ range: ChemicalEntity
399
+ comments:
400
+ - 'Defined in module: bio_entities'
401
+ drug:
402
+ description: Pharmaceutical drugs and medications
403
+ range: Drug
404
+ comments:
405
+ - 'Defined in module: bio_entities'
406
+ metabolite:
407
+ description: Metabolites and metabolic intermediates
408
+ range: Metabolite
409
+ comments:
410
+ - 'Defined in module: bio_entities'
411
+ protein:
412
+ description: Proteins and protein complexes
413
+ range: Protein
414
+ comments:
415
+ - 'Defined in module: bio_entities'
416
+ phenotype:
417
+ description: Phenotypic abnormalities from Human Phenotype Ontology
418
+ range: Phenotype
419
+ comments:
420
+ - 'Defined in module: bio_entities'
421
+ clinical_finding:
422
+ description: Clinical findings and observations
423
+ range: ClinicalFinding
424
+ comments:
425
+ - 'Defined in module: bio_entities'
426
+ biological_process:
427
+ description: Biological processes from Gene Ontology
428
+ range: BiologicalProcess
429
+ comments:
430
+ - 'Defined in module: bio_entities'
431
+ metabolic_process:
432
+ description: Metabolic processes and pathways
433
+ range: MetabolicProcess
434
+ comments:
435
+ - 'Defined in module: bio_entities'
436
+ molecular_function:
437
+ description: Molecular functions from Gene Ontology
438
+ range: MolecularFunction
439
+ comments:
440
+ - 'Defined in module: bio_entities'
441
+ cellular_component:
442
+ description: Cellular components and locations from Gene Ontology
443
+ range: CellularComponent
444
+ comments:
445
+ - 'Defined in module: bio_entities'
446
+ sequence_feature:
447
+ description: Sequence features from the Sequence Ontology
448
+ range: SequenceFeature
449
+ comments:
450
+ - 'Defined in module: bio_entities'
451
+ gene_feature:
452
+ description: Gene-related sequence features
453
+ range: GeneFeature
454
+ comments:
455
+ - 'Defined in module: bio_entities'
456
+ environment:
457
+ description: Environmental systems and biomes
458
+ range: Environment
459
+ comments:
460
+ - 'Defined in module: bio_entities'
461
+ environmental_material:
462
+ description: Environmental materials and substances
463
+ range: EnvironmentalMaterial
464
+ comments:
465
+ - 'Defined in module: bio_entities'
466
+ quality:
467
+ description: Phenotypic qualities and attributes from PATO
468
+ range: Quality
469
+ comments:
470
+ - 'Defined in module: bio_entities'
471
+ physical_quality:
472
+ description: Physical qualities like size, shape, color
473
+ range: PhysicalQuality
474
+ comments:
475
+ - 'Defined in module: bio_entities'
476
+ rel_to_oxygen:
477
+ description: Organism's relationship to oxygen for growth and survival
478
+ range: RelToOxygenEnum
479
+ comments:
480
+ - 'Defined in module: relationship_to_oxygen'
481
+ organism_taxon:
482
+ description: The organism taxon classification
483
+ range: OrganismTaxonEnum
484
+ comments:
485
+ - 'Defined in module: taxonomy'
486
+ common_organism_taxa:
487
+ description: Common model organisms used in biological research, mapped to NCBI Taxonomy IDs
488
+ range: CommonOrganismTaxaEnum
489
+ comments:
490
+ - 'Defined in module: taxonomy'
491
+ taxonomic_rank:
492
+ description: Standard taxonomic ranks used in biological classification
493
+ range: TaxonomicRank
494
+ comments:
495
+ - 'Defined in module: taxonomy'
496
+ biological_kingdom:
497
+ description: Major kingdoms/domains of life
498
+ range: BiologicalKingdom
499
+ comments:
500
+ - 'Defined in module: taxonomy'
501
+ interaction_detection_method:
502
+ description: Methods used to detect molecular interactions
503
+ range: InteractionDetectionMethod
504
+ comments:
505
+ - 'Defined in module: psi_mi'
506
+ interaction:
507
+ description: Types of molecular interactions
508
+ range: InteractionType
509
+ comments:
510
+ - 'Defined in module: psi_mi'
511
+ experimental_role:
512
+ description: Role played by a participant in the experiment
513
+ range: ExperimentalRole
514
+ comments:
515
+ - 'Defined in module: psi_mi'
516
+ biological_role:
517
+ description: Physiological role of an interactor
518
+ range: BiologicalRole
519
+ comments:
520
+ - 'Defined in module: psi_mi'
521
+ participant_identification_method:
522
+ description: Methods to identify interaction participants
523
+ range: ParticipantIdentificationMethod
524
+ comments:
525
+ - 'Defined in module: psi_mi'
526
+ feature:
527
+ description: Molecular features affecting interactions
528
+ range: FeatureType
529
+ multivalued: true
530
+ comments:
531
+ - Multiple features may apply
532
+ - 'Defined in module: psi_mi'
533
+ interactor:
534
+ description: Types of molecular species in interactions
535
+ range: InteractorType
536
+ comments:
537
+ - 'Defined in module: psi_mi'
538
+ confidence_score:
539
+ description: Types of confidence scoring methods
540
+ range: ConfidenceScore
541
+ comments:
542
+ - 'Defined in module: psi_mi'
543
+ experimental_preparation:
544
+ description: Sample preparation methods
545
+ range: ExperimentalPreparation
546
+ comments:
547
+ - 'Defined in module: psi_mi'
548
+ plant_sex:
549
+ description: Plant reproductive and sexual system types
550
+ range: PlantSexEnum
551
+ comments:
552
+ - 'Defined in module: plant_sex'
553
+ cell_cycle_phase:
554
+ description: Major phases of the eukaryotic cell cycle
555
+ range: CellCyclePhase
556
+ comments:
557
+ - 'Defined in module: cell_cycle'
558
+ mitotic_phase:
559
+ description: Stages of mitosis (M phase)
560
+ range: MitoticPhase
561
+ comments:
562
+ - 'Defined in module: cell_cycle'
563
+ cell_cycle_checkpoint:
564
+ description: Cell cycle checkpoints that regulate progression
565
+ range: CellCycleCheckpoint
566
+ comments:
567
+ - 'Defined in module: cell_cycle'
568
+ meiotic_phase:
569
+ description: Phases specific to meiotic cell division
570
+ range: MeioticPhase
571
+ comments:
572
+ - 'Defined in module: cell_cycle'
573
+ cell_cycle_regulator:
574
+ description: Types of cell cycle regulatory molecules
575
+ range: CellCycleRegulator
576
+ comments:
577
+ - 'Defined in module: cell_cycle'
578
+ cell_proliferation_state:
579
+ description: Cell proliferation and growth states
580
+ range: CellProliferationState
581
+ comments:
582
+ - 'Defined in module: cell_cycle'
583
+ dna_damage_response:
584
+ description: DNA damage response pathways during cell cycle
585
+ range: DNADamageResponse
586
+ comments:
587
+ - 'Defined in module: cell_cycle'
588
+ dna_base:
589
+ description: Standard DNA nucleotide bases (canonical)
590
+ range: DNABaseEnum
591
+ comments:
592
+ - 'Defined in module: sequence_alphabets'
593
+ rna_base:
594
+ description: Standard RNA nucleotide bases (canonical)
595
+ range: RNABaseEnum
596
+ comments:
597
+ - 'Defined in module: sequence_alphabets'
598
+ iupac_nucleotide:
599
+ description: Complete IUPAC nucleotide codes including ambiguous bases for DNA/RNA sequences
600
+ range: IUPACNucleotideCode
601
+ comments:
602
+ - 'Defined in module: sequence_chemistry'
603
+ standard_amino_acid:
604
+ description: The 20 standard proteinogenic amino acids with IUPAC single-letter codes
605
+ range: StandardAminoAcid
606
+ comments:
607
+ - 'Defined in module: sequence_chemistry'
608
+ iupac_amino_acid:
609
+ description: Complete IUPAC amino acid codes including standard amino acids, rare amino acids, and ambiguity codes
610
+ range: IUPACAminoAcidCode
611
+ comments:
612
+ - 'Defined in module: sequence_chemistry'
613
+ sequence_alphabet:
614
+ description: Types of sequence alphabets used in bioinformatics
615
+ range: SequenceAlphabet
616
+ comments:
617
+ - 'Defined in module: sequence_chemistry'
618
+ sequence_quality_encoding:
619
+ description: Quality score encoding standards used in FASTQ files and sequencing data
620
+ range: SequenceQualityEncoding
621
+ comments:
622
+ - 'Defined in module: sequence_chemistry'
623
+ genetic_code_table:
624
+ description: NCBI genetic code translation tables for different organisms
625
+ range: GeneticCodeTable
626
+ comments:
627
+ - 'Defined in module: sequence_chemistry'
628
+ sequence_strand:
629
+ description: Strand orientation for nucleic acid sequences
630
+ range: SequenceStrand
631
+ comments:
632
+ - 'Defined in module: sequence_chemistry'
633
+ sequence_topology:
634
+ description: Topological structure of nucleic acid molecules
635
+ range: SequenceTopology
636
+ comments:
637
+ - 'Defined in module: sequence_chemistry'
638
+ sequence_modality:
639
+ description: Types of sequence data based on experimental method
640
+ range: SequenceModality
641
+ comments:
642
+ - 'Defined in module: sequence_chemistry'
643
+ eye_color:
644
+ description: Human eye color phenotypes
645
+ range: EyeColorEnum
646
+ comments:
647
+ - 'Defined in module: biological_colors'
648
+ hair_color:
649
+ description: Human hair color phenotypes
650
+ range: HairColorEnum
651
+ comments:
652
+ - 'Defined in module: biological_colors'
653
+ flower_color:
654
+ description: Common flower colors
655
+ range: FlowerColorEnum
656
+ comments:
657
+ - 'Defined in module: biological_colors'
658
+ animal_coat_color:
659
+ description: Animal coat/fur colors
660
+ range: AnimalCoatColorEnum
661
+ comments:
662
+ - 'Defined in module: biological_colors'
663
+ skin_tone:
664
+ description: Human skin tone classifications (Fitzpatrick scale based)
665
+ range: SkinToneEnum
666
+ comments:
667
+ - 'Defined in module: biological_colors'
668
+ plant_leaf_color:
669
+ description: Plant leaf colors (including seasonal changes)
670
+ range: PlantLeafColorEnum
671
+ comments:
672
+ - 'Defined in module: biological_colors'
673
+ plant_developmental_stage:
674
+ description: Major developmental stages in the plant life cycle, from seed germination through senescence
675
+ range: PlantDevelopmentalStage
676
+ comments:
677
+ - 'Defined in module: plant_developmental_stages'
678
+ cds_phase:
679
+ description: For features of type CDS (coding sequence), the phase indicates where the feature begins with reference to
680
+ the reading frame
681
+ range: CdsPhaseType
682
+ comments:
683
+ - 'Defined in module: genomics'
684
+ contig_collection:
685
+ description: The type of the contig set; the type of the 'omics data set
686
+ range: ContigCollectionType
687
+ comments:
688
+ - 'Defined in module: genomics'
689
+ strand:
690
+ description: The strand that a feature appears on relative to a landmark
691
+ range: StrandType
692
+ comments:
693
+ - 'Defined in module: genomics'
694
+ sequence:
695
+ description: The type of sequence being represented
696
+ range: SequenceType
697
+ comments:
698
+ - 'Defined in module: genomics'
699
+ viral_genome_type:
700
+ description: Types of viral genomes based on Baltimore classification
701
+ range: ViralGenomeTypeEnum
702
+ comments:
703
+ - 'Defined in module: viral_genome_types'
704
+ trophic_level:
705
+ description: Trophic levels are the feeding position in a food chain
706
+ range: TrophicLevelEnum
707
+ comments:
708
+ - 'Defined in module: trophic_levels'
709
+ uni_prot_species:
710
+ description: UniProt species mnemonic codes for reference proteomes with associated metadata
711
+ range: UniProtSpeciesCode
712
+ comments:
713
+ - 'Defined in module: uniprot_species'
714
+ currency_chemical:
715
+ description: Common metabolic currency molecules and cofactors that serve as energy carriers, electron donors/acceptors,
716
+ and group transfer agents in cellular metabolism
717
+ range: CurrencyChemical
718
+ comments:
719
+ - 'Defined in module: currency_chemicals'
720
+ lipid_category:
721
+ description: Major categories of lipids based on SwissLipids classification
722
+ range: LipidCategory
723
+ comments:
724
+ - 'Defined in module: lipid_categories'
725
+ plant_sexual_system:
726
+ description: Sexual systems in plants, describing the distribution and types of reproductive organs (flowers) within and
727
+ among individual plants
728
+ range: PlantSexualSystem
729
+ comments:
730
+ - 'Defined in module: plant_biology'
731
+ insdc_geographic_location:
732
+ description: INSDC controlled vocabulary for geographic locations of collected samples
733
+ range: InsdcGeographicLocationEnum
734
+ comments:
735
+ - 'Defined in module: insdc_geographic_locations'
736
+ peak_annotation_series_label:
737
+ description: Types of peak annotations in mass spectrometry data
738
+ range: PeakAnnotationSeriesLabel
739
+ comments:
740
+ - 'Defined in module: proteomics_standards'
741
+ peptide_ion_series:
742
+ description: Types of peptide fragment ion series in mass spectrometry
743
+ range: PeptideIonSeries
744
+ comments:
745
+ - 'Defined in module: proteomics_standards'
746
+ mass_error_unit:
747
+ description: Units for expressing mass error in mass spectrometry
748
+ range: MassErrorUnit
749
+ comments:
750
+ - 'Defined in module: proteomics_standards'
751
+ dna_base_extended:
752
+ description: Extended DNA alphabet with IUPAC ambiguity codes
753
+ range: DNABaseExtendedEnum
754
+ comments:
755
+ - 'Defined in module: sequence_alphabets'
756
+ rna_base_extended:
757
+ description: Extended RNA alphabet with IUPAC ambiguity codes
758
+ range: RNABaseExtendedEnum
759
+ comments:
760
+ - 'Defined in module: sequence_alphabets'
761
+ amino_acid:
762
+ description: Standard amino acid single letter codes
763
+ range: AminoAcidEnum
764
+ comments:
765
+ - 'Defined in module: sequence_alphabets'
766
+ amino_acid_extended:
767
+ description: Extended amino acid alphabet with ambiguity codes and special characters
768
+ range: AminoAcidExtendedEnum
769
+ comments:
770
+ - 'Defined in module: sequence_alphabets'
771
+ codon:
772
+ description: Standard genetic code codons (DNA)
773
+ range: CodonEnum
774
+ comments:
775
+ - 'Defined in module: sequence_alphabets'
776
+ nucleotide_modification:
777
+ description: Common nucleotide modifications
778
+ range: NucleotideModificationEnum
779
+ comments:
780
+ - 'Defined in module: sequence_alphabets'
781
+ sequence_quality:
782
+ description: Sequence quality indicators (Phred scores)
783
+ range: SequenceQualityEnum
784
+ comments:
785
+ - 'Defined in module: sequence_alphabets'
786
+ insdc_missing_value:
787
+ description: INSDC (International Nucleotide Sequence Database Collaboration) controlled vocabulary for missing values
788
+ in sequence records
789
+ range: InsdcMissingValueEnum
790
+ comments:
791
+ - 'Defined in module: insdc_missing_values'
792
+ protein_evidence_for_existence:
793
+ description: The evidence for the existence of a biological entity
794
+ range: ProteinEvidenceForExistence
795
+ comments:
796
+ - 'Defined in module: protein_evidence'
797
+ ref_seq_status:
798
+ description: RefSeq status codes, taken from https://www
799
+ range: RefSeqStatusType
800
+ comments:
801
+ - 'Defined in module: protein_evidence'
802
+ sequencing_platform:
803
+ description: Major DNA/RNA sequencing platforms and instruments used in genomics research
804
+ range: SequencingPlatform
805
+ comments:
806
+ - 'Defined in module: sequencing_platforms'
807
+ sequencing_chemistry:
808
+ description: Fundamental chemical methods used for DNA/RNA sequencing
809
+ range: SequencingChemistry
810
+ comments:
811
+ - 'Defined in module: sequencing_platforms'
812
+ library_preparation:
813
+ description: Methods for preparing sequencing libraries from nucleic acid samples
814
+ range: LibraryPreparation
815
+ comments:
816
+ - 'Defined in module: sequencing_platforms'
817
+ sequencing_application:
818
+ description: Primary applications or assays using DNA/RNA sequencing
819
+ range: SequencingApplication
820
+ comments:
821
+ - 'Defined in module: sequencing_platforms'
822
+ read:
823
+ description: Configuration of sequencing reads generated by different platforms
824
+ range: ReadType
825
+ comments:
826
+ - 'Defined in module: sequencing_platforms'
827
+ sequence_file_format:
828
+ description: Standard file formats used for storing sequence data
829
+ range: SequenceFileFormat
830
+ comments:
831
+ - 'Defined in module: sequencing_platforms'
832
+ data_processing_level:
833
+ description: Levels of processing applied to raw sequencing data
834
+ range: DataProcessingLevel
835
+ comments:
836
+ - 'Defined in module: sequencing_platforms'
837
+ energy_source:
838
+ description: Types of energy sources and generation methods
839
+ range: EnergySource
840
+ comments:
841
+ - 'Defined in module: energy'
842
+ energy_unit:
843
+ description: Units for measuring energy
844
+ range: EnergyUnit
845
+ comments:
846
+ - 'Defined in module: energy'
847
+ power_unit:
848
+ description: Units for measuring power (energy per time)
849
+ range: PowerUnit
850
+ comments:
851
+ - 'Defined in module: energy'
852
+ energy_efficiency_rating:
853
+ description: Energy efficiency ratings and standards
854
+ range: EnergyEfficiencyRating
855
+ comments:
856
+ - 'Defined in module: energy'
857
+ building_energy_standard:
858
+ description: Building energy efficiency standards and certifications
859
+ range: BuildingEnergyStandard
860
+ comments:
861
+ - 'Defined in module: energy'
862
+ grid:
863
+ description: Types of electrical grid systems
864
+ range: GridType
865
+ comments:
866
+ - 'Defined in module: energy'
867
+ energy_storage:
868
+ description: Types of energy storage systems
869
+ range: EnergyStorageType
870
+ comments:
871
+ - 'Defined in module: energy'
872
+ emission_scope:
873
+ description: Greenhouse gas emission scopes (GHG Protocol)
874
+ range: EmissionScope
875
+ comments:
876
+ - 'Defined in module: energy'
877
+ carbon_intensity:
878
+ description: Carbon intensity levels for energy sources
879
+ range: CarbonIntensity
880
+ comments:
881
+ - 'Defined in module: energy'
882
+ electricity_market:
883
+ description: Types of electricity markets and pricing
884
+ range: ElectricityMarket
885
+ comments:
886
+ - 'Defined in module: energy'
887
+ fossil_fuel_type:
888
+ description: Types of fossil fuels used for energy generation
889
+ range: FossilFuelTypeEnum
890
+ comments:
891
+ - 'Defined in module: fossil_fuels'
892
+ reaction_directionality:
893
+ description: The directionality of a chemical reaction or process
894
+ range: ReactionDirectionality
895
+ comments:
896
+ - 'Defined in module: reaction_directionality'
897
+ reaction_type:
898
+ description: Types of chemical reactions
899
+ range: ReactionTypeEnum
900
+ comments:
901
+ - 'Defined in module: reactions'
902
+ reaction_mechanism:
903
+ description: Reaction mechanism types
904
+ range: ReactionMechanismEnum
905
+ comments:
906
+ - 'Defined in module: reactions'
907
+ catalyst_type:
908
+ description: Types of catalysts
909
+ range: CatalystTypeEnum
910
+ comments:
911
+ - 'Defined in module: reactions'
912
+ reaction_condition:
913
+ description: Reaction conditions
914
+ range: ReactionConditionEnum
915
+ comments:
916
+ - 'Defined in module: reactions'
917
+ reaction_rate_order:
918
+ description: Reaction rate orders
919
+ range: ReactionRateOrderEnum
920
+ comments:
921
+ - 'Defined in module: reactions'
922
+ enzyme_class:
923
+ description: EC enzyme classification
924
+ range: EnzymeClassEnum
925
+ comments:
926
+ - 'Defined in module: reactions'
927
+ solvent_class:
928
+ description: Classes of solvents
929
+ range: SolventClassEnum
930
+ comments:
931
+ - 'Defined in module: reactions'
932
+ thermodynamic_parameter:
933
+ description: Thermodynamic parameters
934
+ range: ThermodynamicParameterEnum
935
+ comments:
936
+ - 'Defined in module: reactions'
937
+ subatomic_particle:
938
+ description: Fundamental and composite subatomic particles
939
+ range: SubatomicParticleEnum
940
+ comments:
941
+ - 'Defined in module: chemical_entities'
942
+ bond_type:
943
+ description: Types of chemical bonds
944
+ range: BondTypeEnum
945
+ comments:
946
+ - 'Defined in module: chemical_entities'
947
+ periodic_table_block:
948
+ description: Blocks of the periodic table
949
+ range: PeriodicTableBlockEnum
950
+ comments:
951
+ - 'Defined in module: chemical_entities'
952
+ element_family:
953
+ description: Chemical element families/groups
954
+ range: ElementFamilyEnum
955
+ comments:
956
+ - 'Defined in module: chemical_entities'
957
+ element_metallic_classification:
958
+ description: Metallic character classification
959
+ range: ElementMetallicClassificationEnum
960
+ comments:
961
+ - 'Defined in module: chemical_entities'
962
+ hard_or_soft:
963
+ description: HSAB (Hard Soft Acid Base) classification
964
+ range: HardOrSoftEnum
965
+ comments:
966
+ - 'Defined in module: chemical_entities'
967
+ bronsted_acid_base_role:
968
+ description: Brønsted-Lowry acid-base roles
969
+ range: BronstedAcidBaseRoleEnum
970
+ comments:
971
+ - 'Defined in module: chemical_entities'
972
+ lewis_acid_base_role:
973
+ description: Lewis acid-base roles
974
+ range: LewisAcidBaseRoleEnum
975
+ comments:
976
+ - 'Defined in module: chemical_entities'
977
+ oxidation_state:
978
+ description: Common oxidation states
979
+ range: OxidationStateEnum
980
+ comments:
981
+ - 'Defined in module: chemical_entities'
982
+ chirality:
983
+ description: Chirality/stereochemistry descriptors
984
+ range: ChiralityEnum
985
+ comments:
986
+ - 'Defined in module: chemical_entities'
987
+ nanostructure_morphology:
988
+ description: Types of nanostructure morphologies
989
+ range: NanostructureMorphologyEnum
990
+ comments:
991
+ - 'Defined in module: chemical_entities'
992
+ sentiment_classification:
993
+ description: Standard labels for sentiment analysis classification tasks
994
+ range: SentimentClassificationEnum
995
+ comments:
996
+ - 'Defined in module: sentiment_analysis'
997
+ fine_sentiment_classification:
998
+ description: Fine-grained sentiment analysis labels with intensity levels
999
+ range: FineSentimentClassificationEnum
1000
+ comments:
1001
+ - 'Defined in module: sentiment_analysis'
1002
+ basic_emotion:
1003
+ description: Ekman's six basic emotions commonly used in emotion recognition
1004
+ range: BasicEmotionEnum
1005
+ comments:
1006
+ - 'Defined in module: emotion_classification'
1007
+ extended_emotion:
1008
+ description: Extended emotion set including complex emotions
1009
+ range: ExtendedEmotionEnum
1010
+ comments:
1011
+ - 'Defined in module: emotion_classification'
1012
+ news_topic_category:
1013
+ description: Common news article topic categories
1014
+ range: NewsTopicCategoryEnum
1015
+ comments:
1016
+ - 'Defined in module: text_classification'
1017
+ toxicity_classification:
1018
+ description: Text toxicity classification labels
1019
+ range: ToxicityClassificationEnum
1020
+ comments:
1021
+ - 'Defined in module: text_classification'
1022
+ intent_classification:
1023
+ description: Common chatbot/NLU intent categories
1024
+ range: IntentClassificationEnum
1025
+ comments:
1026
+ - 'Defined in module: text_classification'
1027
+ quality_control:
1028
+ description: Quality control classification labels
1029
+ range: QualityControlEnum
1030
+ comments:
1031
+ - 'Defined in module: quality_control'
1032
+ defect_classification:
1033
+ description: Manufacturing defect classification
1034
+ range: DefectClassificationEnum
1035
+ comments:
1036
+ - 'Defined in module: quality_control'
1037
+ priority_level:
1038
+ description: Standard priority levels for task/issue classification
1039
+ range: PriorityLevelEnum
1040
+ comments:
1041
+ - 'Defined in module: priority_severity'
1042
+ severity_level:
1043
+ description: Severity levels for incident/bug classification
1044
+ range: SeverityLevelEnum
1045
+ comments:
1046
+ - 'Defined in module: priority_severity'
1047
+ binary_classification:
1048
+ description: Generic binary classification labels
1049
+ range: BinaryClassificationEnum
1050
+ comments:
1051
+ - 'Defined in module: binary_classification'
1052
+ spam_classification:
1053
+ description: Standard labels for spam/ham email classification
1054
+ range: SpamClassificationEnum
1055
+ comments:
1056
+ - 'Defined in module: binary_classification'
1057
+ anomaly_detection:
1058
+ description: Labels for anomaly detection tasks
1059
+ range: AnomalyDetectionEnum
1060
+ comments:
1061
+ - 'Defined in module: binary_classification'
1062
+ churn_classification:
1063
+ description: Customer churn prediction labels
1064
+ range: ChurnClassificationEnum
1065
+ comments:
1066
+ - 'Defined in module: binary_classification'
1067
+ fraud_detection:
1068
+ description: Fraud detection classification labels
1069
+ range: FraudDetectionEnum
1070
+ comments:
1071
+ - 'Defined in module: binary_classification'
1072
+ air_pollutant:
1073
+ description: Common air pollutants and air quality indicators
1074
+ range: AirPollutantEnum
1075
+ comments:
1076
+ - 'Defined in module: valuesets-environmental-health-exposures'
1077
+ pesticide_type:
1078
+ description: Categories of pesticides by target organism or chemical class
1079
+ range: PesticideTypeEnum
1080
+ comments:
1081
+ - 'Defined in module: valuesets-environmental-health-exposures'
1082
+ heavy_metal:
1083
+ description: Heavy metals of environmental health concern
1084
+ range: HeavyMetalEnum
1085
+ comments:
1086
+ - 'Defined in module: valuesets-environmental-health-exposures'
1087
+ exposure_route:
1088
+ description: Routes by which exposure to environmental agents occurs
1089
+ range: ExposureRouteEnum
1090
+ comments:
1091
+ - 'Defined in module: valuesets-environmental-health-exposures'
1092
+ exposure_source:
1093
+ description: Common sources of environmental exposures
1094
+ range: ExposureSourceEnum
1095
+ comments:
1096
+ - 'Defined in module: valuesets-environmental-health-exposures'
1097
+ water_contaminant:
1098
+ description: Common water contaminants
1099
+ range: WaterContaminantEnum
1100
+ comments:
1101
+ - 'Defined in module: valuesets-environmental-health-exposures'
1102
+ endocrine_disruptor:
1103
+ description: Common endocrine disrupting chemicals
1104
+ range: EndocrineDisruptorEnum
1105
+ comments:
1106
+ - 'Defined in module: valuesets-environmental-health-exposures'
1107
+ exposure_duration:
1108
+ description: Duration categories for environmental exposures
1109
+ range: ExposureDurationEnum
1110
+ comments:
1111
+ - 'Defined in module: valuesets-environmental-health-exposures'
1112
+ synthesis_method:
1113
+ description: Common material synthesis and processing methods
1114
+ range: SynthesisMethodEnum
1115
+ comments:
1116
+ - 'Defined in module: synthesis_methods'
1117
+ crystal_growth_method:
1118
+ description: Methods for growing single crystals
1119
+ range: CrystalGrowthMethodEnum
1120
+ comments:
1121
+ - 'Defined in module: synthesis_methods'
1122
+ additive_manufacturing:
1123
+ description: 3D printing and additive manufacturing methods
1124
+ range: AdditiveManufacturingEnum
1125
+ comments:
1126
+ - 'Defined in module: synthesis_methods'
1127
+ material_class:
1128
+ description: Major classes of materials
1129
+ range: MaterialClassEnum
1130
+ comments:
1131
+ - 'Defined in module: material_types'
1132
+ polymer_type:
1133
+ description: Types of polymer materials
1134
+ range: PolymerTypeEnum
1135
+ comments:
1136
+ - 'Defined in module: material_types'
1137
+ metal_type:
1138
+ description: Types of metallic materials
1139
+ range: MetalTypeEnum
1140
+ comments:
1141
+ - 'Defined in module: material_types'
1142
+ composite_type:
1143
+ description: Types of composite materials
1144
+ range: CompositeTypeEnum
1145
+ comments:
1146
+ - 'Defined in module: material_types'
1147
+ crystal_system:
1148
+ description: The seven crystal systems in crystallography
1149
+ range: CrystalSystemEnum
1150
+ comments:
1151
+ - 'Defined in module: crystal_structures'
1152
+ bravais_lattice:
1153
+ description: The 14 Bravais lattices describing all possible crystal lattices
1154
+ range: BravaisLatticeEnum
1155
+ comments:
1156
+ - 'Defined in module: crystal_structures'
1157
+ microscopy_method:
1158
+ description: Microscopy techniques for material characterization
1159
+ range: MicroscopyMethodEnum
1160
+ comments:
1161
+ - 'Defined in module: characterization_methods'
1162
+ spectroscopy_method:
1163
+ description: Spectroscopy techniques for material analysis
1164
+ range: SpectroscopyMethodEnum
1165
+ comments:
1166
+ - 'Defined in module: characterization_methods'
1167
+ thermal_analysis_method:
1168
+ description: Thermal analysis techniques
1169
+ range: ThermalAnalysisMethodEnum
1170
+ comments:
1171
+ - 'Defined in module: characterization_methods'
1172
+ mechanical_testing_method:
1173
+ description: Mechanical testing methods
1174
+ range: MechanicalTestingMethodEnum
1175
+ comments:
1176
+ - 'Defined in module: characterization_methods'
1177
+ traditional_pigment:
1178
+ description: Traditional artist pigments and their colors
1179
+ range: TraditionalPigmentEnum
1180
+ comments:
1181
+ - 'Defined in module: pigments_dyes'
1182
+ industrial_dye:
1183
+ description: Industrial and textile dyes
1184
+ range: IndustrialDyeEnum
1185
+ comments:
1186
+ - 'Defined in module: pigments_dyes'
1187
+ food_coloring:
1188
+ description: Food coloring and natural food dyes
1189
+ range: FoodColoringEnum
1190
+ comments:
1191
+ - 'Defined in module: pigments_dyes'
1192
+ automobile_paint_color:
1193
+ description: Common automobile paint colors
1194
+ range: AutomobilePaintColorEnum
1195
+ comments:
1196
+ - 'Defined in module: pigments_dyes'
1197
+ electrical_conductivity:
1198
+ description: Classification of materials by electrical conductivity
1199
+ range: ElectricalConductivityEnum
1200
+ comments:
1201
+ - 'Defined in module: material_properties'
1202
+ magnetic_property:
1203
+ description: Classification of materials by magnetic properties
1204
+ range: MagneticPropertyEnum
1205
+ comments:
1206
+ - 'Defined in module: material_properties'
1207
+ optical_property:
1208
+ description: Optical properties of materials
1209
+ range: OpticalPropertyEnum
1210
+ comments:
1211
+ - 'Defined in module: material_properties'
1212
+ thermal_conductivity:
1213
+ description: Classification by thermal conductivity
1214
+ range: ThermalConductivityEnum
1215
+ comments:
1216
+ - 'Defined in module: material_properties'
1217
+ mechanical_behavior:
1218
+ description: Mechanical behavior of materials under stress
1219
+ range: MechanicalBehaviorEnum
1220
+ comments:
1221
+ - 'Defined in module: material_properties'
1222
+ publication:
1223
+ description: Types of academic and research publications
1224
+ range: PublicationType
1225
+ comments:
1226
+ - 'Defined in module: research'
1227
+ peer_review_status:
1228
+ description: Status of peer review process
1229
+ range: PeerReviewStatus
1230
+ comments:
1231
+ - 'Defined in module: research'
1232
+ academic_degree:
1233
+ description: Academic degrees and qualifications
1234
+ range: AcademicDegree
1235
+ comments:
1236
+ - 'Defined in module: research'
1237
+ license:
1238
+ description: Common software and content licenses
1239
+ range: LicenseType
1240
+ comments:
1241
+ - 'Defined in module: research'
1242
+ research_field:
1243
+ description: Major research fields and disciplines
1244
+ range: ResearchField
1245
+ comments:
1246
+ - 'Defined in module: research'
1247
+ funding:
1248
+ description: Types of research funding
1249
+ range: FundingType
1250
+ comments:
1251
+ - 'Defined in module: research'
1252
+ manuscript_section:
1253
+ description: Sections of a scientific manuscript or publication
1254
+ range: ManuscriptSection
1255
+ comments:
1256
+ - 'Defined in module: research'
1257
+ research_role:
1258
+ description: Roles in research and authorship
1259
+ range: ResearchRole
1260
+ comments:
1261
+ - 'Defined in module: research'
1262
+ open_access:
1263
+ description: Types of open access publishing
1264
+ range: OpenAccessType
1265
+ comments:
1266
+ - 'Defined in module: research'
1267
+ citation_style:
1268
+ description: Common citation and reference styles
1269
+ range: CitationStyle
1270
+ comments:
1271
+ - 'Defined in module: research'
1272
+ day_of_week:
1273
+ description: Days of the week following ISO 8601 standard (Monday = 1)
1274
+ range: DayOfWeek
1275
+ comments:
1276
+ - 'Defined in module: temporal'
1277
+ month:
1278
+ description: Months of the year
1279
+ range: Month
1280
+ comments:
1281
+ - 'Defined in module: temporal'
1282
+ quarter:
1283
+ description: Calendar quarters
1284
+ range: Quarter
1285
+ comments:
1286
+ - 'Defined in module: temporal'
1287
+ season:
1288
+ description: Seasons of the year (Northern Hemisphere)
1289
+ range: Season
1290
+ comments:
1291
+ - 'Defined in module: temporal'
1292
+ time_period:
1293
+ description: Common time periods and intervals
1294
+ range: TimePeriod
1295
+ comments:
1296
+ - 'Defined in module: temporal'
1297
+ time_unit:
1298
+ description: Units of time measurement
1299
+ range: TimeUnitEnum
1300
+ comments:
1301
+ - 'Defined in module: measurements'
1302
+ time_of_day:
1303
+ description: Common times of day
1304
+ range: TimeOfDay
1305
+ comments:
1306
+ - 'Defined in module: temporal'
1307
+ business_time_frame:
1308
+ description: Common business and financial time frames
1309
+ range: BusinessTimeFrame
1310
+ comments:
1311
+ - 'Defined in module: temporal'
1312
+ geological_era:
1313
+ description: Major geological eras
1314
+ range: GeologicalEra
1315
+ comments:
1316
+ - 'Defined in module: temporal'
1317
+ historical_period:
1318
+ description: Major historical periods
1319
+ range: HistoricalPeriod
1320
+ comments:
1321
+ - 'Defined in module: temporal'
1322
+ length_unit:
1323
+ description: Units of length/distance measurement
1324
+ range: LengthUnitEnum
1325
+ comments:
1326
+ - 'Defined in module: measurements'
1327
+ mass_unit:
1328
+ description: Units of mass measurement
1329
+ range: MassUnitEnum
1330
+ comments:
1331
+ - 'Defined in module: measurements'
1332
+ volume_unit:
1333
+ description: Units of volume measurement
1334
+ range: VolumeUnitEnum
1335
+ comments:
1336
+ - 'Defined in module: measurements'
1337
+ temperature_unit:
1338
+ description: Units of temperature measurement
1339
+ range: TemperatureUnitEnum
1340
+ comments:
1341
+ - 'Defined in module: measurements'
1342
+ pressure_unit:
1343
+ description: Units of pressure measurement
1344
+ range: PressureUnitEnum
1345
+ comments:
1346
+ - 'Defined in module: measurements'
1347
+ concentration_unit:
1348
+ description: Units of concentration measurement
1349
+ range: ConcentrationUnitEnum
1350
+ comments:
1351
+ - 'Defined in module: measurements'
1352
+ frequency_unit:
1353
+ description: Units of frequency measurement
1354
+ range: FrequencyUnitEnum
1355
+ comments:
1356
+ - 'Defined in module: measurements'
1357
+ angle_unit:
1358
+ description: Units of angle measurement
1359
+ range: AngleUnitEnum
1360
+ comments:
1361
+ - 'Defined in module: measurements'
1362
+ data_size_unit:
1363
+ description: Units of digital data size
1364
+ range: DataSizeUnitEnum
1365
+ comments:
1366
+ - 'Defined in module: measurements'
1367
+ person_status:
1368
+ description: Vital status of a person (living or deceased)
1369
+ range: PersonStatusEnum
1370
+ comments:
1371
+ - 'Defined in module: person_status'
1372
+ basic_color:
1373
+ description: Basic color names commonly used in everyday language
1374
+ range: BasicColorEnum
1375
+ comments:
1376
+ - 'Defined in module: colors'
1377
+ web_color:
1378
+ description: Standard HTML/CSS named colors (147 colors)
1379
+ range: WebColorEnum
1380
+ comments:
1381
+ - 'Defined in module: colors'
1382
+ x11_color:
1383
+ description: X11/Unix system colors (extended set)
1384
+ range: X11ColorEnum
1385
+ comments:
1386
+ - 'Defined in module: colors'
1387
+ color_space:
1388
+ description: Color space and model types
1389
+ range: ColorSpaceEnum
1390
+ comments:
1391
+ - 'Defined in module: colors'
1392
+ blood_type:
1393
+ description: ABO and Rh blood group classifications
1394
+ range: BloodTypeEnum
1395
+ comments:
1396
+ - 'Defined in module: clinical'
1397
+ anatomical_system:
1398
+ description: Major anatomical systems of the body
1399
+ range: AnatomicalSystemEnum
1400
+ comments:
1401
+ - 'Defined in module: clinical'
1402
+ medical_specialty:
1403
+ description: The medical specialty classification
1404
+ range: MedicalSpecialtyEnum
1405
+ comments:
1406
+ - 'Defined in module: clinical'
1407
+ drug_route:
1408
+ description: The drug route classification
1409
+ range: DrugRouteEnum
1410
+ comments:
1411
+ - 'Defined in module: clinical'
1412
+ vital_sign:
1413
+ description: The vital sign classification
1414
+ range: VitalSignEnum
1415
+ comments:
1416
+ - 'Defined in module: clinical'
1417
+ diagnostic_test_type:
1418
+ description: The diagnostic test type classification
1419
+ range: DiagnosticTestTypeEnum
1420
+ comments:
1421
+ - 'Defined in module: clinical'
1422
+ symptom_severity:
1423
+ description: The symptom severity classification
1424
+ range: SymptomSeverityEnum
1425
+ comments:
1426
+ - 'Defined in module: clinical'
1427
+ allergy_type:
1428
+ description: The allergy type classification
1429
+ range: AllergyTypeEnum
1430
+ comments:
1431
+ - 'Defined in module: clinical'
1432
+ vaccine_type:
1433
+ description: The vaccine type classification
1434
+ range: VaccineTypeEnum
1435
+ comments:
1436
+ - 'Defined in module: clinical'
1437
+ bmi_classification:
1438
+ description: The bmi classification classification
1439
+ range: BMIClassificationEnum
1440
+ comments:
1441
+ - 'Defined in module: clinical'
1442
+ mining:
1443
+ description: Types of mining operations
1444
+ range: MiningType
1445
+ comments:
1446
+ - 'Defined in module: mining'
1447
+ mineral_category:
1448
+ description: Categories of minerals and materials
1449
+ range: MineralCategory
1450
+ comments:
1451
+ - 'Defined in module: mining'
1452
+ critical_mineral:
1453
+ description: Critical minerals essential for economic and national security, particularly for clean energy, defense, and
1454
+ technology applications
1455
+ range: CriticalMineral
1456
+ comments:
1457
+ - 'Defined in module: mining'
1458
+ common_mineral:
1459
+ description: Common minerals extracted through mining
1460
+ range: CommonMineral
1461
+ comments:
1462
+ - 'Defined in module: mining'
1463
+ mining_equipment:
1464
+ description: Types of mining equipment
1465
+ range: MiningEquipment
1466
+ comments:
1467
+ - 'Defined in module: mining'
1468
+ ore_grade:
1469
+ description: Classification of ore grades
1470
+ range: OreGrade
1471
+ comments:
1472
+ - 'Defined in module: mining'
1473
+ mining_phase:
1474
+ description: Phases of mining operations
1475
+ range: MiningPhase
1476
+ comments:
1477
+ - 'Defined in module: mining'
1478
+ mining_hazard:
1479
+ description: Mining-related hazards and risks
1480
+ range: MiningHazard
1481
+ comments:
1482
+ - 'Defined in module: mining'
1483
+ environmental_impact:
1484
+ description: Environmental impacts of mining
1485
+ range: EnvironmentalImpact
1486
+ comments:
1487
+ - 'Defined in module: mining'
1488
+ extractive_industry_facility_type:
1489
+ description: Types of extractive industry facilities
1490
+ range: ExtractiveIndustryFacilityTypeEnum
1491
+ comments:
1492
+ - 'Defined in module: extractive_industry'
1493
+ extractive_industry_product_type:
1494
+ description: Types of products extracted from extractive industry facilities
1495
+ range: ExtractiveIndustryProductTypeEnum
1496
+ comments:
1497
+ - 'Defined in module: extractive_industry'
1498
+ mining_method:
1499
+ description: Methods used for extracting minerals from the earth
1500
+ range: MiningMethodEnum
1501
+ comments:
1502
+ - 'Defined in module: extractive_industry'
1503
+ well_type:
1504
+ description: Types of wells used for extracting fluid resources
1505
+ range: WellTypeEnum
1506
+ comments:
1507
+ - 'Defined in module: extractive_industry'
1508
+ safety_color:
1509
+ description: ANSI/ISO standard safety colors
1510
+ range: SafetyColorEnum
1511
+ comments:
1512
+ - 'Defined in module: safety_colors'
1513
+ traffic_light_color:
1514
+ description: Traffic signal colors (international)
1515
+ range: TrafficLightColorEnum
1516
+ comments:
1517
+ - 'Defined in module: safety_colors'
1518
+ hazmat_color:
1519
+ description: Hazardous materials placarding colors (DOT/UN)
1520
+ range: HazmatColorEnum
1521
+ comments:
1522
+ - 'Defined in module: safety_colors'
1523
+ fire_safety_color:
1524
+ description: Fire safety equipment and signage colors
1525
+ range: FireSafetyColorEnum
1526
+ comments:
1527
+ - 'Defined in module: safety_colors'
1528
+ maritime_signal_color:
1529
+ description: Maritime signal and navigation colors
1530
+ range: MaritimeSignalColorEnum
1531
+ comments:
1532
+ - 'Defined in module: safety_colors'
1533
+ aviation_light_color:
1534
+ description: Aviation lighting colors
1535
+ range: AviationLightColorEnum
1536
+ comments:
1537
+ - 'Defined in module: safety_colors'
1538
+ electrical_wire_color:
1539
+ description: Electrical wire color codes (US/International)
1540
+ range: ElectricalWireColorEnum
1541
+ comments:
1542
+ - 'Defined in module: safety_colors'
1543
+ karyotypic_sex:
1544
+ description: Karyotypic sex of an individual based on chromosome composition
1545
+ range: KaryotypicSexEnum
1546
+ comments:
1547
+ - 'Defined in module: phenopackets'
1548
+ phenotypic_sex:
1549
+ description: Phenotypic sex of an individual based on observable characteristics
1550
+ range: PhenotypicSexEnum
1551
+ comments:
1552
+ - 'Defined in module: phenopackets'
1553
+ allelic_state:
1554
+ description: Allelic state/zygosity of a variant or genetic feature
1555
+ range: AllelicStateEnum
1556
+ comments:
1557
+ - 'Defined in module: phenopackets'
1558
+ laterality:
1559
+ description: Laterality/sidedness of a finding or anatomical structure
1560
+ range: LateralityEnum
1561
+ comments:
1562
+ - 'Defined in module: phenopackets'
1563
+ onset_timing:
1564
+ description: Timing of disease or phenotype onset relative to developmental stages
1565
+ range: OnsetTimingEnum
1566
+ comments:
1567
+ - 'Defined in module: phenopackets'
1568
+ acmg_pathogenicity:
1569
+ description: ACMG/AMP variant pathogenicity classification for clinical genetics
1570
+ range: ACMGPathogenicityEnum
1571
+ comments:
1572
+ - 'Defined in module: phenopackets'
1573
+ therapeutic_actionability:
1574
+ description: Clinical actionability of a genetic finding for treatment decisions
1575
+ range: TherapeuticActionabilityEnum
1576
+ comments:
1577
+ - 'Defined in module: phenopackets'
1578
+ interpretation_progress:
1579
+ description: Progress status of clinical interpretation or diagnosis
1580
+ range: InterpretationProgressEnum
1581
+ comments:
1582
+ - 'Defined in module: phenopackets'
1583
+ regimen_status:
1584
+ description: Status of a therapeutic regimen or treatment protocol
1585
+ range: RegimenStatusEnum
1586
+ comments:
1587
+ - 'Defined in module: phenopackets'
1588
+ drug_response:
1589
+ description: Response categories for drug treatment outcomes
1590
+ range: DrugResponseEnum
1591
+ comments:
1592
+ - 'Defined in module: phenopackets'
1593
+ race_omb1997:
1594
+ description: Race categories following OMB 1997 standards used by NIH and federal agencies
1595
+ range: RaceOMB1997Enum
1596
+ comments:
1597
+ - 'Defined in module: nih_demographics'
1598
+ ethnicity_omb1997:
1599
+ description: Ethnicity categories following OMB 1997 standards used by NIH and federal agencies
1600
+ range: EthnicityOMB1997Enum
1601
+ comments:
1602
+ - 'Defined in module: nih_demographics'
1603
+ biological_sex:
1604
+ description: Biological sex assigned at birth based on anatomical and physiological traits
1605
+ range: BiologicalSexEnum
1606
+ comments:
1607
+ - 'Defined in module: nih_demographics'
1608
+ age_group:
1609
+ description: Standard age groups used in NIH clinical research, particularly NINDS CDEs
1610
+ range: AgeGroupEnum
1611
+ comments:
1612
+ - 'Defined in module: nih_demographics'
1613
+ participant_vital_status:
1614
+ description: Vital status of a research participant in clinical studies
1615
+ range: ParticipantVitalStatusEnum
1616
+ comments:
1617
+ - 'Defined in module: nih_demographics'
1618
+ recruitment_status:
1619
+ description: Clinical trial or study recruitment status per NIH/ClinicalTrials
1620
+ range: RecruitmentStatusEnum
1621
+ comments:
1622
+ - 'Defined in module: nih_demographics'
1623
+ study_phase:
1624
+ description: Clinical trial phases per FDA and NIH definitions
1625
+ range: StudyPhaseEnum
1626
+ comments:
1627
+ - 'Defined in module: nih_demographics'
1628
+ image_file_format:
1629
+ description: Common image file formats
1630
+ range: ImageFileFormatEnum
1631
+ comments:
1632
+ - 'Defined in module: file_formats'
1633
+ document_format:
1634
+ description: Document and text file formats
1635
+ range: DocumentFormatEnum
1636
+ comments:
1637
+ - 'Defined in module: file_formats'
1638
+ data_format:
1639
+ description: Structured data file formats
1640
+ range: DataFormatEnum
1641
+ comments:
1642
+ - 'Defined in module: file_formats'
1643
+ archive_format:
1644
+ description: Archive and compression formats
1645
+ range: ArchiveFormatEnum
1646
+ comments:
1647
+ - 'Defined in module: file_formats'
1648
+ video_format:
1649
+ description: Video file formats
1650
+ range: VideoFormatEnum
1651
+ comments:
1652
+ - 'Defined in module: file_formats'
1653
+ audio_format:
1654
+ description: Audio file formats
1655
+ range: AudioFormatEnum
1656
+ comments:
1657
+ - 'Defined in module: file_formats'
1658
+ programming_language_file:
1659
+ description: Programming language source file extensions
1660
+ range: ProgrammingLanguageFileEnum
1661
+ comments:
1662
+ - 'Defined in module: file_formats'
1663
+ network_protocol:
1664
+ description: Network communication protocols
1665
+ range: NetworkProtocolEnum
1666
+ comments:
1667
+ - 'Defined in module: file_formats'
1668
+ mime:
1669
+ description: Common MIME types for various file formats
1670
+ range: MimeType
1671
+ comments:
1672
+ - 'Defined in module: mime_types'
1673
+ mime_type_category:
1674
+ description: Categories of MIME types
1675
+ range: MimeTypeCategory
1676
+ comments:
1677
+ - 'Defined in module: mime_types'
1678
+ text_charset:
1679
+ description: Character encodings for text content
1680
+ range: TextCharset
1681
+ comments:
1682
+ - 'Defined in module: mime_types'
1683
+ compression:
1684
+ description: Compression types used with Content-Encoding
1685
+ range: CompressionType
1686
+ comments:
1687
+ - 'Defined in module: mime_types'
1688
+ technology_readiness_level:
1689
+ description: NASA's Technology Readiness Level scale for assessing the maturity of technologies from basic research through
1690
+ operational deployment
1691
+ range: TechnologyReadinessLevel
1692
+ comments:
1693
+ - 'Defined in module: maturity_levels'
1694
+ software_maturity_level:
1695
+ description: General software maturity assessment levels
1696
+ range: SoftwareMaturityLevel
1697
+ comments:
1698
+ - 'Defined in module: maturity_levels'
1699
+ capability_maturity_level:
1700
+ description: CMMI levels for assessing organizational process maturity in software development
1701
+ range: CapabilityMaturityLevel
1702
+ comments:
1703
+ - 'Defined in module: maturity_levels'
1704
+ standards_maturity_level:
1705
+ description: Maturity levels for standards and specifications
1706
+ range: StandardsMaturityLevel
1707
+ comments:
1708
+ - 'Defined in module: maturity_levels'
1709
+ project_maturity_level:
1710
+ description: General project development maturity assessment
1711
+ range: ProjectMaturityLevel
1712
+ comments:
1713
+ - 'Defined in module: maturity_levels'
1714
+ data_maturity_level:
1715
+ description: Levels of data quality, governance, and organizational maturity
1716
+ range: DataMaturityLevel
1717
+ comments:
1718
+ - 'Defined in module: maturity_levels'
1719
+ open_source_maturity_level:
1720
+ description: Maturity assessment for open source projects
1721
+ range: OpenSourceMaturityLevel
1722
+ comments:
1723
+ - 'Defined in module: maturity_levels'
1724
+ state_of_matter:
1725
+ description: The physical state or phase of matter
1726
+ range: StateOfMatterEnum
1727
+ comments:
1728
+ - 'Defined in module: valuesets-physics-states-of-matter'
1729
+ simple_spatial_direction:
1730
+ description: Basic spatial directional terms for general use
1731
+ range: SimpleSpatialDirection
1732
+ comments:
1733
+ - 'Defined in module: spatial_qualifiers'
1734
+ anatomical_side:
1735
+ description: Anatomical sides as defined in the Biological Spatial Ontology (BSPO)
1736
+ range: AnatomicalSide
1737
+ comments:
1738
+ - 'Defined in module: spatial_qualifiers'
1739
+ anatomical_region:
1740
+ description: Anatomical regions based on spatial position
1741
+ range: AnatomicalRegion
1742
+ comments:
1743
+ - 'Defined in module: spatial_qualifiers'
1744
+ anatomical_axis:
1745
+ description: Anatomical axes defining spatial organization
1746
+ range: AnatomicalAxis
1747
+ comments:
1748
+ - 'Defined in module: spatial_qualifiers'
1749
+ anatomical_plane:
1750
+ description: Standard anatomical planes for sectioning
1751
+ range: AnatomicalPlane
1752
+ comments:
1753
+ - 'Defined in module: spatial_qualifiers'
1754
+ spatial_relationship:
1755
+ description: Spatial relationships between anatomical structures
1756
+ range: SpatialRelationship
1757
+ comments:
1758
+ - 'Defined in module: spatial_qualifiers'
1759
+ cell_polarity:
1760
+ description: Spatial polarity in cells and tissues
1761
+ range: CellPolarity
1762
+ comments:
1763
+ - 'Defined in module: spatial_qualifiers'
1764
+ data_absent:
1765
+ description: Used to specify why the normally expected content of the data element is missing
1766
+ range: DataAbsentEnum
1767
+ comments:
1768
+ - 'Defined in module: data_absent_reason'
1769
+ country_code_iso2:
1770
+ description: ISO 3166-1 alpha-2 country codes (2-letter codes)
1771
+ range: CountryCodeISO2Enum
1772
+ comments:
1773
+ - 'Defined in module: valuesets-geography-geographic-codes'
1774
+ country_code_iso3:
1775
+ description: ISO 3166-1 alpha-3 country codes (3-letter codes)
1776
+ range: CountryCodeISO3Enum
1777
+ comments:
1778
+ - 'Defined in module: valuesets-geography-geographic-codes'
1779
+ us_state_code:
1780
+ description: United States state and territory codes
1781
+ range: USStateCodeEnum
1782
+ comments:
1783
+ - 'Defined in module: valuesets-geography-geographic-codes'
1784
+ canadian_province_code:
1785
+ description: Canadian province and territory codes
1786
+ range: CanadianProvinceCodeEnum
1787
+ comments:
1788
+ - 'Defined in module: valuesets-geography-geographic-codes'
1789
+ compass_direction:
1790
+ description: Cardinal and intercardinal compass directions
1791
+ range: CompassDirection
1792
+ comments:
1793
+ - 'Defined in module: valuesets-geography-geographic-codes'
1794
+ relative_direction:
1795
+ description: Relative directional terms
1796
+ range: RelativeDirection
1797
+ comments:
1798
+ - 'Defined in module: valuesets-geography-geographic-codes'
1799
+ wind_direction:
1800
+ description: Wind direction nomenclature (named for where wind comes FROM)
1801
+ range: WindDirection
1802
+ comments:
1803
+ - 'Defined in module: valuesets-geography-geographic-codes'
1804
+ continent:
1805
+ description: Continental regions
1806
+ range: ContinentEnum
1807
+ comments:
1808
+ - 'Defined in module: valuesets-geography-geographic-codes'
1809
+ un_region:
1810
+ description: United Nations regional classifications
1811
+ range: UNRegionEnum
1812
+ comments:
1813
+ - 'Defined in module: valuesets-geography-geographic-codes'
1814
+ language_code_iso639_1:
1815
+ description: ISO 639-1 two-letter language codes
1816
+ range: LanguageCodeISO639_1Enum
1817
+ comments:
1818
+ - 'Defined in module: valuesets-geography-geographic-codes'
1819
+ time_zone:
1820
+ description: Common time zones
1821
+ range: TimeZoneEnum
1822
+ comments:
1823
+ - 'Defined in module: valuesets-geography-geographic-codes'
1824
+ currency_code_iso4217:
1825
+ description: ISO 4217 currency codes
1826
+ range: CurrencyCodeISO4217Enum
1827
+ comments:
1828
+ - 'Defined in module: valuesets-geography-geographic-codes'