valuesets 0.3.1__py3-none-any.whl
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- valuesets/__init__.py +7 -0
- valuesets/_version.py +8 -0
- valuesets/datamodel/valuesets.py +13796 -0
- valuesets/datamodel/valuesets_dataclass.py +24503 -0
- valuesets/datamodel/valuesets_pydantic.py +13796 -0
- valuesets/enums/__init__.py +590 -0
- valuesets/enums/academic/__init__.py +1 -0
- valuesets/enums/academic/research.py +559 -0
- valuesets/enums/analytical_chemistry/__init__.py +1 -0
- valuesets/enums/analytical_chemistry/mass_spectrometry.py +198 -0
- valuesets/enums/bio/__init__.py +1 -0
- valuesets/enums/bio/biological_colors.py +238 -0
- valuesets/enums/bio/cell_cycle.py +180 -0
- valuesets/enums/bio/currency_chemicals.py +52 -0
- valuesets/enums/bio/developmental_stages.py +103 -0
- valuesets/enums/bio/genome_features.py +182 -0
- valuesets/enums/bio/genomics.py +91 -0
- valuesets/enums/bio/go_aspect.py +32 -0
- valuesets/enums/bio/go_causality.py +58 -0
- valuesets/enums/bio/go_evidence.py +129 -0
- valuesets/enums/bio/human_developmental_stages.py +62 -0
- valuesets/enums/bio/insdc_geographic_locations.py +591 -0
- valuesets/enums/bio/insdc_missing_values.py +49 -0
- valuesets/enums/bio/lipid_categories.py +67 -0
- valuesets/enums/bio/mouse_developmental_stages.py +62 -0
- valuesets/enums/bio/plant_biology.py +86 -0
- valuesets/enums/bio/plant_developmental_stages.py +54 -0
- valuesets/enums/bio/plant_sex.py +81 -0
- valuesets/enums/bio/protein_evidence.py +61 -0
- valuesets/enums/bio/proteomics_standards.py +123 -0
- valuesets/enums/bio/psi_mi.py +306 -0
- valuesets/enums/bio/relationship_to_oxygen.py +37 -0
- valuesets/enums/bio/sequence_alphabets.py +449 -0
- valuesets/enums/bio/sequence_chemistry.py +357 -0
- valuesets/enums/bio/sequencing_platforms.py +302 -0
- valuesets/enums/bio/structural_biology.py +320 -0
- valuesets/enums/bio/taxonomy.py +238 -0
- valuesets/enums/bio/trophic_levels.py +85 -0
- valuesets/enums/bio/uniprot_species.py +344 -0
- valuesets/enums/bio/viral_genome_types.py +47 -0
- valuesets/enums/bioprocessing/__init__.py +1 -0
- valuesets/enums/bioprocessing/scale_up.py +249 -0
- valuesets/enums/business/__init__.py +1 -0
- valuesets/enums/business/human_resources.py +275 -0
- valuesets/enums/business/industry_classifications.py +181 -0
- valuesets/enums/business/management_operations.py +228 -0
- valuesets/enums/business/organizational_structures.py +236 -0
- valuesets/enums/business/quality_management.py +181 -0
- valuesets/enums/business/supply_chain.py +232 -0
- valuesets/enums/chemistry/__init__.py +1 -0
- valuesets/enums/chemistry/chemical_entities.py +315 -0
- valuesets/enums/chemistry/reaction_directionality.py +65 -0
- valuesets/enums/chemistry/reactions.py +256 -0
- valuesets/enums/clinical/__init__.py +1 -0
- valuesets/enums/clinical/nih_demographics.py +177 -0
- valuesets/enums/clinical/phenopackets.py +254 -0
- valuesets/enums/common_value_sets.py +8791 -0
- valuesets/enums/computing/__init__.py +1 -0
- valuesets/enums/computing/file_formats.py +294 -0
- valuesets/enums/computing/maturity_levels.py +196 -0
- valuesets/enums/computing/mime_types.py +227 -0
- valuesets/enums/confidence_levels.py +168 -0
- valuesets/enums/contributor.py +30 -0
- valuesets/enums/core.py +42 -0
- valuesets/enums/data/__init__.py +1 -0
- valuesets/enums/data/data_absent_reason.py +53 -0
- valuesets/enums/data_science/__init__.py +1 -0
- valuesets/enums/data_science/binary_classification.py +87 -0
- valuesets/enums/data_science/emotion_classification.py +66 -0
- valuesets/enums/data_science/priority_severity.py +73 -0
- valuesets/enums/data_science/quality_control.py +46 -0
- valuesets/enums/data_science/sentiment_analysis.py +50 -0
- valuesets/enums/data_science/text_classification.py +97 -0
- valuesets/enums/demographics.py +206 -0
- valuesets/enums/ecological_interactions.py +151 -0
- valuesets/enums/energy/__init__.py +1 -0
- valuesets/enums/energy/energy.py +343 -0
- valuesets/enums/energy/fossil_fuels.py +29 -0
- valuesets/enums/energy/nuclear/__init__.py +1 -0
- valuesets/enums/energy/nuclear/nuclear_facilities.py +195 -0
- valuesets/enums/energy/nuclear/nuclear_fuel_cycle.py +96 -0
- valuesets/enums/energy/nuclear/nuclear_fuels.py +175 -0
- valuesets/enums/energy/nuclear/nuclear_operations.py +191 -0
- valuesets/enums/energy/nuclear/nuclear_regulatory.py +188 -0
- valuesets/enums/energy/nuclear/nuclear_safety.py +164 -0
- valuesets/enums/energy/nuclear/nuclear_waste.py +158 -0
- valuesets/enums/energy/nuclear/reactor_types.py +163 -0
- valuesets/enums/environmental_health/__init__.py +1 -0
- valuesets/enums/environmental_health/exposures.py +265 -0
- valuesets/enums/geography/__init__.py +1 -0
- valuesets/enums/geography/geographic_codes.py +741 -0
- valuesets/enums/health/__init__.py +12 -0
- valuesets/enums/health/vaccination.py +98 -0
- valuesets/enums/health.py +36 -0
- valuesets/enums/health_base.py +36 -0
- valuesets/enums/healthcare.py +45 -0
- valuesets/enums/industry/__init__.py +1 -0
- valuesets/enums/industry/extractive_industry.py +94 -0
- valuesets/enums/industry/mining.py +388 -0
- valuesets/enums/industry/safety_colors.py +201 -0
- valuesets/enums/investigation.py +27 -0
- valuesets/enums/materials_science/__init__.py +1 -0
- valuesets/enums/materials_science/characterization_methods.py +112 -0
- valuesets/enums/materials_science/crystal_structures.py +76 -0
- valuesets/enums/materials_science/material_properties.py +119 -0
- valuesets/enums/materials_science/material_types.py +104 -0
- valuesets/enums/materials_science/pigments_dyes.py +198 -0
- valuesets/enums/materials_science/synthesis_methods.py +109 -0
- valuesets/enums/medical/__init__.py +1 -0
- valuesets/enums/medical/clinical.py +277 -0
- valuesets/enums/medical/neuroimaging.py +119 -0
- valuesets/enums/mining_processing.py +302 -0
- valuesets/enums/physics/__init__.py +1 -0
- valuesets/enums/physics/states_of_matter.py +46 -0
- valuesets/enums/social/__init__.py +1 -0
- valuesets/enums/social/person_status.py +29 -0
- valuesets/enums/spatial/__init__.py +1 -0
- valuesets/enums/spatial/spatial_qualifiers.py +246 -0
- valuesets/enums/statistics/__init__.py +5 -0
- valuesets/enums/statistics/prediction_outcomes.py +31 -0
- valuesets/enums/statistics.py +31 -0
- valuesets/enums/time/__init__.py +1 -0
- valuesets/enums/time/temporal.py +254 -0
- valuesets/enums/units/__init__.py +1 -0
- valuesets/enums/units/measurements.py +310 -0
- valuesets/enums/visual/__init__.py +1 -0
- valuesets/enums/visual/colors.py +376 -0
- valuesets/generators/__init__.py +19 -0
- valuesets/generators/auto_slot_injector.py +280 -0
- valuesets/generators/enhanced_pydantic_generator.py +100 -0
- valuesets/generators/enum_slot_generator.py +201 -0
- valuesets/generators/modular_rich_generator.py +353 -0
- valuesets/generators/prefix_standardizer.py +198 -0
- valuesets/generators/rich_enum.py +127 -0
- valuesets/generators/rich_pydantic_generator.py +310 -0
- valuesets/generators/smart_slot_syncer.py +428 -0
- valuesets/generators/sssom_generator.py +394 -0
- valuesets/merged/merged_hierarchy.yaml +21649 -0
- valuesets/schema/README.md +3 -0
- valuesets/schema/academic/research.yaml +911 -0
- valuesets/schema/analytical_chemistry/mass_spectrometry.yaml +206 -0
- valuesets/schema/bio/bio_entities.yaml +364 -0
- valuesets/schema/bio/biological_colors.yaml +434 -0
- valuesets/schema/bio/cell_cycle.yaml +309 -0
- valuesets/schema/bio/currency_chemicals.yaml +70 -0
- valuesets/schema/bio/developmental_stages.yaml +226 -0
- valuesets/schema/bio/genome_features.yaml +342 -0
- valuesets/schema/bio/genomics.yaml +101 -0
- valuesets/schema/bio/go_aspect.yaml +39 -0
- valuesets/schema/bio/go_causality.yaml +119 -0
- valuesets/schema/bio/go_evidence.yaml +215 -0
- valuesets/schema/bio/insdc_geographic_locations.yaml +911 -0
- valuesets/schema/bio/insdc_missing_values.yaml +85 -0
- valuesets/schema/bio/lipid_categories.yaml +72 -0
- valuesets/schema/bio/plant_biology.yaml +125 -0
- valuesets/schema/bio/plant_developmental_stages.yaml +77 -0
- valuesets/schema/bio/plant_sex.yaml +108 -0
- valuesets/schema/bio/protein_evidence.yaml +63 -0
- valuesets/schema/bio/proteomics_standards.yaml +116 -0
- valuesets/schema/bio/psi_mi.yaml +400 -0
- valuesets/schema/bio/relationship_to_oxygen.yaml +46 -0
- valuesets/schema/bio/sequence_alphabets.yaml +1168 -0
- valuesets/schema/bio/sequence_chemistry.yaml +477 -0
- valuesets/schema/bio/sequencing_platforms.yaml +515 -0
- valuesets/schema/bio/structural_biology.yaml +428 -0
- valuesets/schema/bio/taxonomy.yaml +453 -0
- valuesets/schema/bio/trophic_levels.yaml +118 -0
- valuesets/schema/bio/uniprot_species.yaml +1209 -0
- valuesets/schema/bio/viral_genome_types.yaml +99 -0
- valuesets/schema/bioprocessing/scale_up.yaml +458 -0
- valuesets/schema/business/human_resources.yaml +752 -0
- valuesets/schema/business/industry_classifications.yaml +448 -0
- valuesets/schema/business/management_operations.yaml +602 -0
- valuesets/schema/business/organizational_structures.yaml +645 -0
- valuesets/schema/business/quality_management.yaml +502 -0
- valuesets/schema/business/supply_chain.yaml +688 -0
- valuesets/schema/chemistry/chemical_entities.yaml +639 -0
- valuesets/schema/chemistry/reaction_directionality.yaml +60 -0
- valuesets/schema/chemistry/reactions.yaml +442 -0
- valuesets/schema/clinical/nih_demographics.yaml +285 -0
- valuesets/schema/clinical/phenopackets.yaml +429 -0
- valuesets/schema/computing/file_formats.yaml +631 -0
- valuesets/schema/computing/maturity_levels.yaml +229 -0
- valuesets/schema/computing/mime_types.yaml +266 -0
- valuesets/schema/confidence_levels.yaml +206 -0
- valuesets/schema/contributor.yaml +30 -0
- valuesets/schema/core.yaml +55 -0
- valuesets/schema/data/data_absent_reason.yaml +82 -0
- valuesets/schema/data_science/binary_classification.yaml +125 -0
- valuesets/schema/data_science/emotion_classification.yaml +109 -0
- valuesets/schema/data_science/priority_severity.yaml +122 -0
- valuesets/schema/data_science/quality_control.yaml +68 -0
- valuesets/schema/data_science/sentiment_analysis.yaml +81 -0
- valuesets/schema/data_science/text_classification.yaml +135 -0
- valuesets/schema/demographics.yaml +238 -0
- valuesets/schema/ecological_interactions.yaml +298 -0
- valuesets/schema/energy/energy.yaml +595 -0
- valuesets/schema/energy/fossil_fuels.yaml +28 -0
- valuesets/schema/energy/nuclear/nuclear_facilities.yaml +463 -0
- valuesets/schema/energy/nuclear/nuclear_fuel_cycle.yaml +82 -0
- valuesets/schema/energy/nuclear/nuclear_fuels.yaml +421 -0
- valuesets/schema/energy/nuclear/nuclear_operations.yaml +480 -0
- valuesets/schema/energy/nuclear/nuclear_regulatory.yaml +200 -0
- valuesets/schema/energy/nuclear/nuclear_safety.yaml +352 -0
- valuesets/schema/energy/nuclear/nuclear_waste.yaml +332 -0
- valuesets/schema/energy/nuclear/reactor_types.yaml +394 -0
- valuesets/schema/environmental_health/exposures.yaml +355 -0
- valuesets/schema/generated_slots.yaml +1828 -0
- valuesets/schema/geography/geographic_codes.yaml +1018 -0
- valuesets/schema/health/vaccination.yaml +102 -0
- valuesets/schema/health.yaml +38 -0
- valuesets/schema/healthcare.yaml +53 -0
- valuesets/schema/industry/extractive_industry.yaml +89 -0
- valuesets/schema/industry/mining.yaml +888 -0
- valuesets/schema/industry/safety_colors.yaml +375 -0
- valuesets/schema/investigation.yaml +64 -0
- valuesets/schema/materials_science/characterization_methods.yaml +193 -0
- valuesets/schema/materials_science/crystal_structures.yaml +138 -0
- valuesets/schema/materials_science/material_properties.yaml +135 -0
- valuesets/schema/materials_science/material_types.yaml +151 -0
- valuesets/schema/materials_science/pigments_dyes.yaml +465 -0
- valuesets/schema/materials_science/synthesis_methods.yaml +186 -0
- valuesets/schema/medical/clinical.yaml +610 -0
- valuesets/schema/medical/neuroimaging.yaml +325 -0
- valuesets/schema/mining_processing.yaml +295 -0
- valuesets/schema/physics/states_of_matter.yaml +46 -0
- valuesets/schema/slot_mixins.yaml +143 -0
- valuesets/schema/social/person_status.yaml +28 -0
- valuesets/schema/spatial/spatial_qualifiers.yaml +466 -0
- valuesets/schema/statistics/prediction_outcomes.yaml +26 -0
- valuesets/schema/statistics.yaml +34 -0
- valuesets/schema/time/temporal.yaml +435 -0
- valuesets/schema/types.yaml +15 -0
- valuesets/schema/units/measurements.yaml +675 -0
- valuesets/schema/valuesets.yaml +100 -0
- valuesets/schema/visual/colors.yaml +778 -0
- valuesets/utils/__init__.py +6 -0
- valuesets/utils/comparison.py +102 -0
- valuesets/utils/expand_dynamic_enums.py +414 -0
- valuesets/utils/mapping_utils.py +236 -0
- valuesets/validators/__init__.py +11 -0
- valuesets/validators/enum_evaluator.py +669 -0
- valuesets/validators/oak_config.yaml +70 -0
- valuesets/validators/validate_with_ols.py +241 -0
- valuesets-0.3.1.dist-info/METADATA +395 -0
- valuesets-0.3.1.dist-info/RECORD +248 -0
- valuesets-0.3.1.dist-info/WHEEL +4 -0
- valuesets-0.3.1.dist-info/licenses/LICENSE +201 -0
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name: generated_slots
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title: Auto-generated Slots for Value Sets
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description: Automatically generated slot definitions for all enums in the value sets collection.
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id: https://w3id.org/valuesets/generated-slots
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version: 1.0.0
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status: release
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imports:
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- linkml:types
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prefixes:
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linkml: https://w3id.org/linkml/
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# cval: https://w3id.org/linkml-common/
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valuesets: https://w3id.org/valuesets/
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default_prefix: valuesets
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default_curi_maps:
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- semweb_context
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slots:
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education_level:
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description: Highest level of education completed, following NIH demographics standards
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range: EducationLevelEnum
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comments:
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- 'Defined in module: nih_demographics'
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marital_status:
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description: Marital or civil status of a person
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range: MaritalStatusEnum
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comments:
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- 'Defined in module: person_status'
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employment_status:
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description: Employment status of a person
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range: EmploymentStatusEnum
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comments:
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- 'Defined in module: person_status'
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housing_status:
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description: Housing status of patients per UDS Plus HRSA standards
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range: HousingStatus
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comments:
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- 'Defined in module: valuesets-demographics'
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gender_identity:
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description: Current gender identity, which may differ from sex assigned at birth
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range: GenderIdentityEnum
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comments:
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- 'Defined in module: nih_demographics'
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omb_race_category:
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description: Office of Management and Budget (OMB) race category codes
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range: OmbRaceCategory
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comments:
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- 'Defined in module: valuesets-demographics'
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omb_ethnicity_category:
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description: Office of Management and Budget (OMB) ethnicity category codes
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range: OmbEthnicityCategory
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comments:
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- 'Defined in module: valuesets-demographics'
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biotic_interaction:
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description: Types of biotic interactions between organisms, based on RO:0002437 (biotically interacts with)
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range: BioticInteractionType
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comments:
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- 'Defined in module: ecological_interactions'
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prediction_outcome:
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description: The prediction outcome classification
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range: PredictionOutcomeType
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comments:
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- 'Defined in module: valuesets-statistics'
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vital_status:
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description: The vital status of a person or organism
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range: VitalStatusEnum
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comments:
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- 'Defined in module: valuesets-health'
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healthcare_encounter_classification:
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description: The healthcare encounter classification classification
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range: HealthcareEncounterClassification
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comments:
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- 'Defined in module: valuesets-healthcare'
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confidence_level:
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description: Confidence levels for predictions and classifications
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range: ConfidenceLevelEnum
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comments:
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- 'Defined in module: priority_severity'
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cio_confidence_level:
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description: Confidence levels from the Confidence Information Ontology (CIO), representing different levels of trust
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in evidence
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range: CIOConfidenceLevel
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comments:
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- 'Defined in module: confidence_levels'
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obcs_certainty_level:
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description: Certainty levels from the Ontology of Biological and Clinical Statistics (OBCS)
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range: OBCSCertaintyLevel
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comments:
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- 'Defined in module: confidence_levels'
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ipcc_likelihood_scale:
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description: IPCC (Intergovernmental Panel on Climate Change) standardized likelihood scale used to communicate the assessed
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probability of an outcome or result
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range: IPCCLikelihoodScale
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comments:
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- 'Defined in module: confidence_levels'
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ipcc_confidence_level:
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description: IPCC confidence qualifiers used to express the degree of confidence in a finding based on the type, amount,
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quality, and consistency of evidence and the degree of agreement
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range: IPCCConfidenceLevel
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comments:
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- 'Defined in module: confidence_levels'
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ncit_five_point_confidence_scale:
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description: NCIT 5-point subjective confidence scale ranging from "Not at all confident" (1) to "Very confident" (5)
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range: NCITFivePointConfidenceScale
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comments:
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- 'Defined in module: confidence_levels'
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contributor:
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description: The type of contributor being represented
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range: ContributorType
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comments:
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- 'Defined in module: contributor'
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case_or_control:
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description: The case or control classification
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range: CaseOrControlEnum
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comments:
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- 'Defined in module: valuesets-investigation'
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study_design:
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description: The study design classification
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range: StudyDesignEnum
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comments:
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- 'Defined in module: valuesets-investigation'
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investigative_protocol:
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description: The investigative protocol classification
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|
122
|
+
range: InvestigativeProtocolEnum
|
|
123
|
+
comments:
|
|
124
|
+
- 'Defined in module: valuesets-investigation'
|
|
125
|
+
sample_processing:
|
|
126
|
+
description: The sample processing classification
|
|
127
|
+
range: SampleProcessingEnum
|
|
128
|
+
comments:
|
|
129
|
+
- 'Defined in module: valuesets-investigation'
|
|
130
|
+
relative_time:
|
|
131
|
+
description: The relative time classification
|
|
132
|
+
range: RelativeTimeEnum
|
|
133
|
+
comments:
|
|
134
|
+
- 'Defined in module: comet-core'
|
|
135
|
+
presence:
|
|
136
|
+
description: The presence classification
|
|
137
|
+
range: PresenceEnum
|
|
138
|
+
comments:
|
|
139
|
+
- 'Defined in module: comet-core'
|
|
140
|
+
mineralogy_feedstock:
|
|
141
|
+
description: Types of mineral feedstock sources for extraction and processing operations, including primary and secondary
|
|
142
|
+
sources
|
|
143
|
+
range: MineralogyFeedstockClass
|
|
144
|
+
comments:
|
|
145
|
+
- 'Defined in module: mining_processing'
|
|
146
|
+
beneficiation_pathway:
|
|
147
|
+
description: Methods for mineral separation and concentration aligned with advanced ore processing initiatives (AOI-2)
|
|
148
|
+
range: BeneficiationPathway
|
|
149
|
+
comments:
|
|
150
|
+
- 'Defined in module: mining_processing'
|
|
151
|
+
in_situ_chemistry_regime:
|
|
152
|
+
description: Chemical leaching systems for in-situ extraction with associated parameters including pH, Eh, temperature,
|
|
153
|
+
and ionic strength
|
|
154
|
+
range: InSituChemistryRegime
|
|
155
|
+
comments:
|
|
156
|
+
- 'Defined in module: mining_processing'
|
|
157
|
+
extractable_target_element:
|
|
158
|
+
description: Target elements for extraction, particularly rare earth elements (REE) and critical minerals
|
|
159
|
+
range: ExtractableTargetElement
|
|
160
|
+
multivalued: true
|
|
161
|
+
comments:
|
|
162
|
+
- Multiple extractable target elements may apply
|
|
163
|
+
- 'Defined in module: mining_processing'
|
|
164
|
+
sensor_while_drilling_feature:
|
|
165
|
+
description: Measurement while drilling (MWD) and logging while drilling (LWD) features for orebody ML and geosteering
|
|
166
|
+
applications
|
|
167
|
+
range: SensorWhileDrillingFeature
|
|
168
|
+
multivalued: true
|
|
169
|
+
comments:
|
|
170
|
+
- Multiple sensor while drilling features may apply
|
|
171
|
+
- 'Defined in module: mining_processing'
|
|
172
|
+
process_performance_metric:
|
|
173
|
+
description: Key performance indicators for mining and processing operations tied to SMART milestones and sustainability
|
|
174
|
+
goals
|
|
175
|
+
range: ProcessPerformanceMetric
|
|
176
|
+
multivalued: true
|
|
177
|
+
comments:
|
|
178
|
+
- Multiple process performance metrics may apply
|
|
179
|
+
- 'Defined in module: mining_processing'
|
|
180
|
+
bioleach_organism:
|
|
181
|
+
description: Microorganisms used in bioleaching and biomining operations, including engineered strains
|
|
182
|
+
range: BioleachOrganism
|
|
183
|
+
comments:
|
|
184
|
+
- 'Defined in module: mining_processing'
|
|
185
|
+
bioleach_mode:
|
|
186
|
+
description: Mechanisms of bioleaching including indirect and direct bacterial action
|
|
187
|
+
range: BioleachMode
|
|
188
|
+
comments:
|
|
189
|
+
- 'Defined in module: mining_processing'
|
|
190
|
+
autonomy_level:
|
|
191
|
+
description: Levels of autonomy for mining systems including drilling, hauling, and sorting robots (relevant for Topic
|
|
192
|
+
1 initiatives)
|
|
193
|
+
range: AutonomyLevel
|
|
194
|
+
comments:
|
|
195
|
+
- 'Defined in module: mining_processing'
|
|
196
|
+
regulatory_constraint:
|
|
197
|
+
description: Regulatory and community constraints affecting mining operations, particularly for in-situ extraction and
|
|
198
|
+
community engagement
|
|
199
|
+
range: RegulatoryConstraint
|
|
200
|
+
multivalued: true
|
|
201
|
+
comments:
|
|
202
|
+
- Multiple regulatory constraints may apply
|
|
203
|
+
- 'Defined in module: mining_processing'
|
|
204
|
+
outcome_type:
|
|
205
|
+
description: Types of prediction outcomes for classification tasks
|
|
206
|
+
range: OutcomeTypeEnum
|
|
207
|
+
comments:
|
|
208
|
+
- 'Defined in module: prediction_outcomes'
|
|
209
|
+
process_scale:
|
|
210
|
+
description: Scale of bioprocessing operations from lab bench to commercial production
|
|
211
|
+
range: ProcessScaleEnum
|
|
212
|
+
comments:
|
|
213
|
+
- 'Defined in module: scale_up'
|
|
214
|
+
bioreactor_type:
|
|
215
|
+
description: Types of bioreactors used in fermentation and cell culture
|
|
216
|
+
range: BioreactorTypeEnum
|
|
217
|
+
comments:
|
|
218
|
+
- 'Defined in module: scale_up'
|
|
219
|
+
fermentation_mode:
|
|
220
|
+
description: Modes of fermentation operation
|
|
221
|
+
range: FermentationModeEnum
|
|
222
|
+
comments:
|
|
223
|
+
- 'Defined in module: scale_up'
|
|
224
|
+
oxygenation_strategy:
|
|
225
|
+
description: Oxygen supply strategies for fermentation
|
|
226
|
+
range: OxygenationStrategyEnum
|
|
227
|
+
comments:
|
|
228
|
+
- 'Defined in module: scale_up'
|
|
229
|
+
agitation_type:
|
|
230
|
+
description: Types of agitation/mixing in bioreactors
|
|
231
|
+
range: AgitationTypeEnum
|
|
232
|
+
comments:
|
|
233
|
+
- 'Defined in module: scale_up'
|
|
234
|
+
downstream_process:
|
|
235
|
+
description: Downstream processing unit operations
|
|
236
|
+
range: DownstreamProcessEnum
|
|
237
|
+
comments:
|
|
238
|
+
- 'Defined in module: scale_up'
|
|
239
|
+
feedstock_type:
|
|
240
|
+
description: Types of feedstocks for bioprocessing
|
|
241
|
+
range: FeedstockTypeEnum
|
|
242
|
+
comments:
|
|
243
|
+
- 'Defined in module: scale_up'
|
|
244
|
+
product_type:
|
|
245
|
+
description: Types of products from bioprocessing
|
|
246
|
+
range: ProductTypeEnum
|
|
247
|
+
comments:
|
|
248
|
+
- 'Defined in module: scale_up'
|
|
249
|
+
sterilization_method:
|
|
250
|
+
description: Methods for sterilization in bioprocessing
|
|
251
|
+
range: SterilizationMethodEnum
|
|
252
|
+
comments:
|
|
253
|
+
- 'Defined in module: scale_up'
|
|
254
|
+
human_developmental_stage:
|
|
255
|
+
description: The human developmental stage classification
|
|
256
|
+
range: HumanDevelopmentalStage
|
|
257
|
+
comments:
|
|
258
|
+
- 'Defined in module: developmental_stages'
|
|
259
|
+
mouse_developmental_stage:
|
|
260
|
+
description: The mouse developmental stage classification
|
|
261
|
+
range: MouseDevelopmentalStage
|
|
262
|
+
comments:
|
|
263
|
+
- 'Defined in module: developmental_stages'
|
|
264
|
+
genome_feature:
|
|
265
|
+
description: Genome feature types from SOFA (Sequence Ontology Feature Annotation)
|
|
266
|
+
range: GenomeFeatureType
|
|
267
|
+
multivalued: true
|
|
268
|
+
comments:
|
|
269
|
+
- Multiple genome features may apply
|
|
270
|
+
- 'Defined in module: genome_features'
|
|
271
|
+
sample:
|
|
272
|
+
description: Types of biological samples used in structural biology
|
|
273
|
+
range: SampleType
|
|
274
|
+
comments:
|
|
275
|
+
- 'Defined in module: structural_biology'
|
|
276
|
+
structural_biology_technique:
|
|
277
|
+
description: Structural biology experimental techniques
|
|
278
|
+
range: StructuralBiologyTechnique
|
|
279
|
+
comments:
|
|
280
|
+
- 'Defined in module: structural_biology'
|
|
281
|
+
cryo_em_preparation:
|
|
282
|
+
description: Types of cryo-EM sample preparation
|
|
283
|
+
range: CryoEMPreparationType
|
|
284
|
+
comments:
|
|
285
|
+
- 'Defined in module: structural_biology'
|
|
286
|
+
cryo_em_grid:
|
|
287
|
+
description: Types of electron microscopy grids
|
|
288
|
+
range: CryoEMGridType
|
|
289
|
+
comments:
|
|
290
|
+
- 'Defined in module: structural_biology'
|
|
291
|
+
vitrification_method:
|
|
292
|
+
description: Methods for sample vitrification
|
|
293
|
+
range: VitrificationMethod
|
|
294
|
+
comments:
|
|
295
|
+
- 'Defined in module: structural_biology'
|
|
296
|
+
crystallization_method:
|
|
297
|
+
description: Methods for protein crystallization
|
|
298
|
+
range: CrystallizationMethod
|
|
299
|
+
comments:
|
|
300
|
+
- 'Defined in module: structural_biology'
|
|
301
|
+
x_ray_source:
|
|
302
|
+
description: Types of X-ray sources
|
|
303
|
+
range: XRaySource
|
|
304
|
+
comments:
|
|
305
|
+
- 'Defined in module: structural_biology'
|
|
306
|
+
detector:
|
|
307
|
+
description: Types of detectors for structural biology
|
|
308
|
+
range: Detector
|
|
309
|
+
comments:
|
|
310
|
+
- 'Defined in module: structural_biology'
|
|
311
|
+
workflow:
|
|
312
|
+
description: Types of computational processing workflows
|
|
313
|
+
range: WorkflowType
|
|
314
|
+
comments:
|
|
315
|
+
- 'Defined in module: structural_biology'
|
|
316
|
+
file_format:
|
|
317
|
+
description: File formats used in structural biology
|
|
318
|
+
range: FileFormat
|
|
319
|
+
comments:
|
|
320
|
+
- 'Defined in module: structural_biology'
|
|
321
|
+
data:
|
|
322
|
+
description: Types of structural biology data
|
|
323
|
+
range: DataType
|
|
324
|
+
comments:
|
|
325
|
+
- 'Defined in module: structural_biology'
|
|
326
|
+
processing_status:
|
|
327
|
+
description: Status of data processing workflows
|
|
328
|
+
range: ProcessingStatus
|
|
329
|
+
comments:
|
|
330
|
+
- 'Defined in module: structural_biology'
|
|
331
|
+
go_evidence:
|
|
332
|
+
description: Gene Ontology evidence codes mapped to Evidence and Conclusion Ontology (ECO) terms
|
|
333
|
+
range: GOEvidenceCode
|
|
334
|
+
comments:
|
|
335
|
+
- 'Defined in module: go_evidence'
|
|
336
|
+
go_electronic_methods:
|
|
337
|
+
description: Electronic annotation methods used in Gene Ontology, identified by GO_REF codes
|
|
338
|
+
range: GOElectronicMethods
|
|
339
|
+
comments:
|
|
340
|
+
- 'Defined in module: go_evidence'
|
|
341
|
+
metazoan_anatomical_structure:
|
|
342
|
+
description: Any anatomical structure found in metazoan organisms, including organs, tissues, and body parts
|
|
343
|
+
range: MetazoanAnatomicalStructure
|
|
344
|
+
comments:
|
|
345
|
+
- 'Defined in module: bio_entities'
|
|
346
|
+
human_anatomical_structure:
|
|
347
|
+
description: Anatomical structures specific to humans (Homo sapiens)
|
|
348
|
+
range: HumanAnatomicalStructure
|
|
349
|
+
comments:
|
|
350
|
+
- 'Defined in module: bio_entities'
|
|
351
|
+
plant_anatomical_structure:
|
|
352
|
+
description: Any anatomical structure found in plant organisms
|
|
353
|
+
range: PlantAnatomicalStructure
|
|
354
|
+
comments:
|
|
355
|
+
- 'Defined in module: bio_entities'
|
|
356
|
+
cell:
|
|
357
|
+
description: Any cell type from the Cell Ontology (CL), including native and experimentally modified cells
|
|
358
|
+
range: CellType
|
|
359
|
+
comments:
|
|
360
|
+
- 'Defined in module: bio_entities'
|
|
361
|
+
neuron:
|
|
362
|
+
description: Neuron cell types from the Cell Ontology
|
|
363
|
+
range: NeuronType
|
|
364
|
+
comments:
|
|
365
|
+
- 'Defined in module: bio_entities'
|
|
366
|
+
immune_cell:
|
|
367
|
+
description: Immune system cell types (leukocytes and their subtypes)
|
|
368
|
+
range: ImmuneCell
|
|
369
|
+
comments:
|
|
370
|
+
- 'Defined in module: bio_entities'
|
|
371
|
+
stem_cell:
|
|
372
|
+
description: Stem cell types and progenitor cells
|
|
373
|
+
range: StemCell
|
|
374
|
+
comments:
|
|
375
|
+
- 'Defined in module: bio_entities'
|
|
376
|
+
disease:
|
|
377
|
+
description: Human diseases from the Mondo Disease Ontology
|
|
378
|
+
range: Disease
|
|
379
|
+
comments:
|
|
380
|
+
- 'Defined in module: bio_entities'
|
|
381
|
+
infectious_disease:
|
|
382
|
+
description: Infectious diseases caused by pathogenic organisms
|
|
383
|
+
range: InfectiousDisease
|
|
384
|
+
comments:
|
|
385
|
+
- 'Defined in module: bio_entities'
|
|
386
|
+
cancer:
|
|
387
|
+
description: Neoplastic and cancerous diseases
|
|
388
|
+
range: Cancer
|
|
389
|
+
comments:
|
|
390
|
+
- 'Defined in module: bio_entities'
|
|
391
|
+
genetic_disease:
|
|
392
|
+
description: Hereditary and genetic diseases
|
|
393
|
+
range: GeneticDisease
|
|
394
|
+
comments:
|
|
395
|
+
- 'Defined in module: bio_entities'
|
|
396
|
+
chemical_entity:
|
|
397
|
+
description: Any chemical entity from ChEBI ontology
|
|
398
|
+
range: ChemicalEntity
|
|
399
|
+
comments:
|
|
400
|
+
- 'Defined in module: bio_entities'
|
|
401
|
+
drug:
|
|
402
|
+
description: Pharmaceutical drugs and medications
|
|
403
|
+
range: Drug
|
|
404
|
+
comments:
|
|
405
|
+
- 'Defined in module: bio_entities'
|
|
406
|
+
metabolite:
|
|
407
|
+
description: Metabolites and metabolic intermediates
|
|
408
|
+
range: Metabolite
|
|
409
|
+
comments:
|
|
410
|
+
- 'Defined in module: bio_entities'
|
|
411
|
+
protein:
|
|
412
|
+
description: Proteins and protein complexes
|
|
413
|
+
range: Protein
|
|
414
|
+
comments:
|
|
415
|
+
- 'Defined in module: bio_entities'
|
|
416
|
+
phenotype:
|
|
417
|
+
description: Phenotypic abnormalities from Human Phenotype Ontology
|
|
418
|
+
range: Phenotype
|
|
419
|
+
comments:
|
|
420
|
+
- 'Defined in module: bio_entities'
|
|
421
|
+
clinical_finding:
|
|
422
|
+
description: Clinical findings and observations
|
|
423
|
+
range: ClinicalFinding
|
|
424
|
+
comments:
|
|
425
|
+
- 'Defined in module: bio_entities'
|
|
426
|
+
biological_process:
|
|
427
|
+
description: Biological processes from Gene Ontology
|
|
428
|
+
range: BiologicalProcess
|
|
429
|
+
comments:
|
|
430
|
+
- 'Defined in module: bio_entities'
|
|
431
|
+
metabolic_process:
|
|
432
|
+
description: Metabolic processes and pathways
|
|
433
|
+
range: MetabolicProcess
|
|
434
|
+
comments:
|
|
435
|
+
- 'Defined in module: bio_entities'
|
|
436
|
+
molecular_function:
|
|
437
|
+
description: Molecular functions from Gene Ontology
|
|
438
|
+
range: MolecularFunction
|
|
439
|
+
comments:
|
|
440
|
+
- 'Defined in module: bio_entities'
|
|
441
|
+
cellular_component:
|
|
442
|
+
description: Cellular components and locations from Gene Ontology
|
|
443
|
+
range: CellularComponent
|
|
444
|
+
comments:
|
|
445
|
+
- 'Defined in module: bio_entities'
|
|
446
|
+
sequence_feature:
|
|
447
|
+
description: Sequence features from the Sequence Ontology
|
|
448
|
+
range: SequenceFeature
|
|
449
|
+
comments:
|
|
450
|
+
- 'Defined in module: bio_entities'
|
|
451
|
+
gene_feature:
|
|
452
|
+
description: Gene-related sequence features
|
|
453
|
+
range: GeneFeature
|
|
454
|
+
comments:
|
|
455
|
+
- 'Defined in module: bio_entities'
|
|
456
|
+
environment:
|
|
457
|
+
description: Environmental systems and biomes
|
|
458
|
+
range: Environment
|
|
459
|
+
comments:
|
|
460
|
+
- 'Defined in module: bio_entities'
|
|
461
|
+
environmental_material:
|
|
462
|
+
description: Environmental materials and substances
|
|
463
|
+
range: EnvironmentalMaterial
|
|
464
|
+
comments:
|
|
465
|
+
- 'Defined in module: bio_entities'
|
|
466
|
+
quality:
|
|
467
|
+
description: Phenotypic qualities and attributes from PATO
|
|
468
|
+
range: Quality
|
|
469
|
+
comments:
|
|
470
|
+
- 'Defined in module: bio_entities'
|
|
471
|
+
physical_quality:
|
|
472
|
+
description: Physical qualities like size, shape, color
|
|
473
|
+
range: PhysicalQuality
|
|
474
|
+
comments:
|
|
475
|
+
- 'Defined in module: bio_entities'
|
|
476
|
+
rel_to_oxygen:
|
|
477
|
+
description: Organism's relationship to oxygen for growth and survival
|
|
478
|
+
range: RelToOxygenEnum
|
|
479
|
+
comments:
|
|
480
|
+
- 'Defined in module: relationship_to_oxygen'
|
|
481
|
+
organism_taxon:
|
|
482
|
+
description: The organism taxon classification
|
|
483
|
+
range: OrganismTaxonEnum
|
|
484
|
+
comments:
|
|
485
|
+
- 'Defined in module: taxonomy'
|
|
486
|
+
common_organism_taxa:
|
|
487
|
+
description: Common model organisms used in biological research, mapped to NCBI Taxonomy IDs
|
|
488
|
+
range: CommonOrganismTaxaEnum
|
|
489
|
+
comments:
|
|
490
|
+
- 'Defined in module: taxonomy'
|
|
491
|
+
taxonomic_rank:
|
|
492
|
+
description: Standard taxonomic ranks used in biological classification
|
|
493
|
+
range: TaxonomicRank
|
|
494
|
+
comments:
|
|
495
|
+
- 'Defined in module: taxonomy'
|
|
496
|
+
biological_kingdom:
|
|
497
|
+
description: Major kingdoms/domains of life
|
|
498
|
+
range: BiologicalKingdom
|
|
499
|
+
comments:
|
|
500
|
+
- 'Defined in module: taxonomy'
|
|
501
|
+
interaction_detection_method:
|
|
502
|
+
description: Methods used to detect molecular interactions
|
|
503
|
+
range: InteractionDetectionMethod
|
|
504
|
+
comments:
|
|
505
|
+
- 'Defined in module: psi_mi'
|
|
506
|
+
interaction:
|
|
507
|
+
description: Types of molecular interactions
|
|
508
|
+
range: InteractionType
|
|
509
|
+
comments:
|
|
510
|
+
- 'Defined in module: psi_mi'
|
|
511
|
+
experimental_role:
|
|
512
|
+
description: Role played by a participant in the experiment
|
|
513
|
+
range: ExperimentalRole
|
|
514
|
+
comments:
|
|
515
|
+
- 'Defined in module: psi_mi'
|
|
516
|
+
biological_role:
|
|
517
|
+
description: Physiological role of an interactor
|
|
518
|
+
range: BiologicalRole
|
|
519
|
+
comments:
|
|
520
|
+
- 'Defined in module: psi_mi'
|
|
521
|
+
participant_identification_method:
|
|
522
|
+
description: Methods to identify interaction participants
|
|
523
|
+
range: ParticipantIdentificationMethod
|
|
524
|
+
comments:
|
|
525
|
+
- 'Defined in module: psi_mi'
|
|
526
|
+
feature:
|
|
527
|
+
description: Molecular features affecting interactions
|
|
528
|
+
range: FeatureType
|
|
529
|
+
multivalued: true
|
|
530
|
+
comments:
|
|
531
|
+
- Multiple features may apply
|
|
532
|
+
- 'Defined in module: psi_mi'
|
|
533
|
+
interactor:
|
|
534
|
+
description: Types of molecular species in interactions
|
|
535
|
+
range: InteractorType
|
|
536
|
+
comments:
|
|
537
|
+
- 'Defined in module: psi_mi'
|
|
538
|
+
confidence_score:
|
|
539
|
+
description: Types of confidence scoring methods
|
|
540
|
+
range: ConfidenceScore
|
|
541
|
+
comments:
|
|
542
|
+
- 'Defined in module: psi_mi'
|
|
543
|
+
experimental_preparation:
|
|
544
|
+
description: Sample preparation methods
|
|
545
|
+
range: ExperimentalPreparation
|
|
546
|
+
comments:
|
|
547
|
+
- 'Defined in module: psi_mi'
|
|
548
|
+
plant_sex:
|
|
549
|
+
description: Plant reproductive and sexual system types
|
|
550
|
+
range: PlantSexEnum
|
|
551
|
+
comments:
|
|
552
|
+
- 'Defined in module: plant_sex'
|
|
553
|
+
cell_cycle_phase:
|
|
554
|
+
description: Major phases of the eukaryotic cell cycle
|
|
555
|
+
range: CellCyclePhase
|
|
556
|
+
comments:
|
|
557
|
+
- 'Defined in module: cell_cycle'
|
|
558
|
+
mitotic_phase:
|
|
559
|
+
description: Stages of mitosis (M phase)
|
|
560
|
+
range: MitoticPhase
|
|
561
|
+
comments:
|
|
562
|
+
- 'Defined in module: cell_cycle'
|
|
563
|
+
cell_cycle_checkpoint:
|
|
564
|
+
description: Cell cycle checkpoints that regulate progression
|
|
565
|
+
range: CellCycleCheckpoint
|
|
566
|
+
comments:
|
|
567
|
+
- 'Defined in module: cell_cycle'
|
|
568
|
+
meiotic_phase:
|
|
569
|
+
description: Phases specific to meiotic cell division
|
|
570
|
+
range: MeioticPhase
|
|
571
|
+
comments:
|
|
572
|
+
- 'Defined in module: cell_cycle'
|
|
573
|
+
cell_cycle_regulator:
|
|
574
|
+
description: Types of cell cycle regulatory molecules
|
|
575
|
+
range: CellCycleRegulator
|
|
576
|
+
comments:
|
|
577
|
+
- 'Defined in module: cell_cycle'
|
|
578
|
+
cell_proliferation_state:
|
|
579
|
+
description: Cell proliferation and growth states
|
|
580
|
+
range: CellProliferationState
|
|
581
|
+
comments:
|
|
582
|
+
- 'Defined in module: cell_cycle'
|
|
583
|
+
dna_damage_response:
|
|
584
|
+
description: DNA damage response pathways during cell cycle
|
|
585
|
+
range: DNADamageResponse
|
|
586
|
+
comments:
|
|
587
|
+
- 'Defined in module: cell_cycle'
|
|
588
|
+
dna_base:
|
|
589
|
+
description: Standard DNA nucleotide bases (canonical)
|
|
590
|
+
range: DNABaseEnum
|
|
591
|
+
comments:
|
|
592
|
+
- 'Defined in module: sequence_alphabets'
|
|
593
|
+
rna_base:
|
|
594
|
+
description: Standard RNA nucleotide bases (canonical)
|
|
595
|
+
range: RNABaseEnum
|
|
596
|
+
comments:
|
|
597
|
+
- 'Defined in module: sequence_alphabets'
|
|
598
|
+
iupac_nucleotide:
|
|
599
|
+
description: Complete IUPAC nucleotide codes including ambiguous bases for DNA/RNA sequences
|
|
600
|
+
range: IUPACNucleotideCode
|
|
601
|
+
comments:
|
|
602
|
+
- 'Defined in module: sequence_chemistry'
|
|
603
|
+
standard_amino_acid:
|
|
604
|
+
description: The 20 standard proteinogenic amino acids with IUPAC single-letter codes
|
|
605
|
+
range: StandardAminoAcid
|
|
606
|
+
comments:
|
|
607
|
+
- 'Defined in module: sequence_chemistry'
|
|
608
|
+
iupac_amino_acid:
|
|
609
|
+
description: Complete IUPAC amino acid codes including standard amino acids, rare amino acids, and ambiguity codes
|
|
610
|
+
range: IUPACAminoAcidCode
|
|
611
|
+
comments:
|
|
612
|
+
- 'Defined in module: sequence_chemistry'
|
|
613
|
+
sequence_alphabet:
|
|
614
|
+
description: Types of sequence alphabets used in bioinformatics
|
|
615
|
+
range: SequenceAlphabet
|
|
616
|
+
comments:
|
|
617
|
+
- 'Defined in module: sequence_chemistry'
|
|
618
|
+
sequence_quality_encoding:
|
|
619
|
+
description: Quality score encoding standards used in FASTQ files and sequencing data
|
|
620
|
+
range: SequenceQualityEncoding
|
|
621
|
+
comments:
|
|
622
|
+
- 'Defined in module: sequence_chemistry'
|
|
623
|
+
genetic_code_table:
|
|
624
|
+
description: NCBI genetic code translation tables for different organisms
|
|
625
|
+
range: GeneticCodeTable
|
|
626
|
+
comments:
|
|
627
|
+
- 'Defined in module: sequence_chemistry'
|
|
628
|
+
sequence_strand:
|
|
629
|
+
description: Strand orientation for nucleic acid sequences
|
|
630
|
+
range: SequenceStrand
|
|
631
|
+
comments:
|
|
632
|
+
- 'Defined in module: sequence_chemistry'
|
|
633
|
+
sequence_topology:
|
|
634
|
+
description: Topological structure of nucleic acid molecules
|
|
635
|
+
range: SequenceTopology
|
|
636
|
+
comments:
|
|
637
|
+
- 'Defined in module: sequence_chemistry'
|
|
638
|
+
sequence_modality:
|
|
639
|
+
description: Types of sequence data based on experimental method
|
|
640
|
+
range: SequenceModality
|
|
641
|
+
comments:
|
|
642
|
+
- 'Defined in module: sequence_chemistry'
|
|
643
|
+
eye_color:
|
|
644
|
+
description: Human eye color phenotypes
|
|
645
|
+
range: EyeColorEnum
|
|
646
|
+
comments:
|
|
647
|
+
- 'Defined in module: biological_colors'
|
|
648
|
+
hair_color:
|
|
649
|
+
description: Human hair color phenotypes
|
|
650
|
+
range: HairColorEnum
|
|
651
|
+
comments:
|
|
652
|
+
- 'Defined in module: biological_colors'
|
|
653
|
+
flower_color:
|
|
654
|
+
description: Common flower colors
|
|
655
|
+
range: FlowerColorEnum
|
|
656
|
+
comments:
|
|
657
|
+
- 'Defined in module: biological_colors'
|
|
658
|
+
animal_coat_color:
|
|
659
|
+
description: Animal coat/fur colors
|
|
660
|
+
range: AnimalCoatColorEnum
|
|
661
|
+
comments:
|
|
662
|
+
- 'Defined in module: biological_colors'
|
|
663
|
+
skin_tone:
|
|
664
|
+
description: Human skin tone classifications (Fitzpatrick scale based)
|
|
665
|
+
range: SkinToneEnum
|
|
666
|
+
comments:
|
|
667
|
+
- 'Defined in module: biological_colors'
|
|
668
|
+
plant_leaf_color:
|
|
669
|
+
description: Plant leaf colors (including seasonal changes)
|
|
670
|
+
range: PlantLeafColorEnum
|
|
671
|
+
comments:
|
|
672
|
+
- 'Defined in module: biological_colors'
|
|
673
|
+
plant_developmental_stage:
|
|
674
|
+
description: Major developmental stages in the plant life cycle, from seed germination through senescence
|
|
675
|
+
range: PlantDevelopmentalStage
|
|
676
|
+
comments:
|
|
677
|
+
- 'Defined in module: plant_developmental_stages'
|
|
678
|
+
cds_phase:
|
|
679
|
+
description: For features of type CDS (coding sequence), the phase indicates where the feature begins with reference to
|
|
680
|
+
the reading frame
|
|
681
|
+
range: CdsPhaseType
|
|
682
|
+
comments:
|
|
683
|
+
- 'Defined in module: genomics'
|
|
684
|
+
contig_collection:
|
|
685
|
+
description: The type of the contig set; the type of the 'omics data set
|
|
686
|
+
range: ContigCollectionType
|
|
687
|
+
comments:
|
|
688
|
+
- 'Defined in module: genomics'
|
|
689
|
+
strand:
|
|
690
|
+
description: The strand that a feature appears on relative to a landmark
|
|
691
|
+
range: StrandType
|
|
692
|
+
comments:
|
|
693
|
+
- 'Defined in module: genomics'
|
|
694
|
+
sequence:
|
|
695
|
+
description: The type of sequence being represented
|
|
696
|
+
range: SequenceType
|
|
697
|
+
comments:
|
|
698
|
+
- 'Defined in module: genomics'
|
|
699
|
+
viral_genome_type:
|
|
700
|
+
description: Types of viral genomes based on Baltimore classification
|
|
701
|
+
range: ViralGenomeTypeEnum
|
|
702
|
+
comments:
|
|
703
|
+
- 'Defined in module: viral_genome_types'
|
|
704
|
+
trophic_level:
|
|
705
|
+
description: Trophic levels are the feeding position in a food chain
|
|
706
|
+
range: TrophicLevelEnum
|
|
707
|
+
comments:
|
|
708
|
+
- 'Defined in module: trophic_levels'
|
|
709
|
+
uni_prot_species:
|
|
710
|
+
description: UniProt species mnemonic codes for reference proteomes with associated metadata
|
|
711
|
+
range: UniProtSpeciesCode
|
|
712
|
+
comments:
|
|
713
|
+
- 'Defined in module: uniprot_species'
|
|
714
|
+
currency_chemical:
|
|
715
|
+
description: Common metabolic currency molecules and cofactors that serve as energy carriers, electron donors/acceptors,
|
|
716
|
+
and group transfer agents in cellular metabolism
|
|
717
|
+
range: CurrencyChemical
|
|
718
|
+
comments:
|
|
719
|
+
- 'Defined in module: currency_chemicals'
|
|
720
|
+
lipid_category:
|
|
721
|
+
description: Major categories of lipids based on SwissLipids classification
|
|
722
|
+
range: LipidCategory
|
|
723
|
+
comments:
|
|
724
|
+
- 'Defined in module: lipid_categories'
|
|
725
|
+
plant_sexual_system:
|
|
726
|
+
description: Sexual systems in plants, describing the distribution and types of reproductive organs (flowers) within and
|
|
727
|
+
among individual plants
|
|
728
|
+
range: PlantSexualSystem
|
|
729
|
+
comments:
|
|
730
|
+
- 'Defined in module: plant_biology'
|
|
731
|
+
insdc_geographic_location:
|
|
732
|
+
description: INSDC controlled vocabulary for geographic locations of collected samples
|
|
733
|
+
range: InsdcGeographicLocationEnum
|
|
734
|
+
comments:
|
|
735
|
+
- 'Defined in module: insdc_geographic_locations'
|
|
736
|
+
peak_annotation_series_label:
|
|
737
|
+
description: Types of peak annotations in mass spectrometry data
|
|
738
|
+
range: PeakAnnotationSeriesLabel
|
|
739
|
+
comments:
|
|
740
|
+
- 'Defined in module: proteomics_standards'
|
|
741
|
+
peptide_ion_series:
|
|
742
|
+
description: Types of peptide fragment ion series in mass spectrometry
|
|
743
|
+
range: PeptideIonSeries
|
|
744
|
+
comments:
|
|
745
|
+
- 'Defined in module: proteomics_standards'
|
|
746
|
+
mass_error_unit:
|
|
747
|
+
description: Units for expressing mass error in mass spectrometry
|
|
748
|
+
range: MassErrorUnit
|
|
749
|
+
comments:
|
|
750
|
+
- 'Defined in module: proteomics_standards'
|
|
751
|
+
dna_base_extended:
|
|
752
|
+
description: Extended DNA alphabet with IUPAC ambiguity codes
|
|
753
|
+
range: DNABaseExtendedEnum
|
|
754
|
+
comments:
|
|
755
|
+
- 'Defined in module: sequence_alphabets'
|
|
756
|
+
rna_base_extended:
|
|
757
|
+
description: Extended RNA alphabet with IUPAC ambiguity codes
|
|
758
|
+
range: RNABaseExtendedEnum
|
|
759
|
+
comments:
|
|
760
|
+
- 'Defined in module: sequence_alphabets'
|
|
761
|
+
amino_acid:
|
|
762
|
+
description: Standard amino acid single letter codes
|
|
763
|
+
range: AminoAcidEnum
|
|
764
|
+
comments:
|
|
765
|
+
- 'Defined in module: sequence_alphabets'
|
|
766
|
+
amino_acid_extended:
|
|
767
|
+
description: Extended amino acid alphabet with ambiguity codes and special characters
|
|
768
|
+
range: AminoAcidExtendedEnum
|
|
769
|
+
comments:
|
|
770
|
+
- 'Defined in module: sequence_alphabets'
|
|
771
|
+
codon:
|
|
772
|
+
description: Standard genetic code codons (DNA)
|
|
773
|
+
range: CodonEnum
|
|
774
|
+
comments:
|
|
775
|
+
- 'Defined in module: sequence_alphabets'
|
|
776
|
+
nucleotide_modification:
|
|
777
|
+
description: Common nucleotide modifications
|
|
778
|
+
range: NucleotideModificationEnum
|
|
779
|
+
comments:
|
|
780
|
+
- 'Defined in module: sequence_alphabets'
|
|
781
|
+
sequence_quality:
|
|
782
|
+
description: Sequence quality indicators (Phred scores)
|
|
783
|
+
range: SequenceQualityEnum
|
|
784
|
+
comments:
|
|
785
|
+
- 'Defined in module: sequence_alphabets'
|
|
786
|
+
insdc_missing_value:
|
|
787
|
+
description: INSDC (International Nucleotide Sequence Database Collaboration) controlled vocabulary for missing values
|
|
788
|
+
in sequence records
|
|
789
|
+
range: InsdcMissingValueEnum
|
|
790
|
+
comments:
|
|
791
|
+
- 'Defined in module: insdc_missing_values'
|
|
792
|
+
protein_evidence_for_existence:
|
|
793
|
+
description: The evidence for the existence of a biological entity
|
|
794
|
+
range: ProteinEvidenceForExistence
|
|
795
|
+
comments:
|
|
796
|
+
- 'Defined in module: protein_evidence'
|
|
797
|
+
ref_seq_status:
|
|
798
|
+
description: RefSeq status codes, taken from https://www
|
|
799
|
+
range: RefSeqStatusType
|
|
800
|
+
comments:
|
|
801
|
+
- 'Defined in module: protein_evidence'
|
|
802
|
+
sequencing_platform:
|
|
803
|
+
description: Major DNA/RNA sequencing platforms and instruments used in genomics research
|
|
804
|
+
range: SequencingPlatform
|
|
805
|
+
comments:
|
|
806
|
+
- 'Defined in module: sequencing_platforms'
|
|
807
|
+
sequencing_chemistry:
|
|
808
|
+
description: Fundamental chemical methods used for DNA/RNA sequencing
|
|
809
|
+
range: SequencingChemistry
|
|
810
|
+
comments:
|
|
811
|
+
- 'Defined in module: sequencing_platforms'
|
|
812
|
+
library_preparation:
|
|
813
|
+
description: Methods for preparing sequencing libraries from nucleic acid samples
|
|
814
|
+
range: LibraryPreparation
|
|
815
|
+
comments:
|
|
816
|
+
- 'Defined in module: sequencing_platforms'
|
|
817
|
+
sequencing_application:
|
|
818
|
+
description: Primary applications or assays using DNA/RNA sequencing
|
|
819
|
+
range: SequencingApplication
|
|
820
|
+
comments:
|
|
821
|
+
- 'Defined in module: sequencing_platforms'
|
|
822
|
+
read:
|
|
823
|
+
description: Configuration of sequencing reads generated by different platforms
|
|
824
|
+
range: ReadType
|
|
825
|
+
comments:
|
|
826
|
+
- 'Defined in module: sequencing_platforms'
|
|
827
|
+
sequence_file_format:
|
|
828
|
+
description: Standard file formats used for storing sequence data
|
|
829
|
+
range: SequenceFileFormat
|
|
830
|
+
comments:
|
|
831
|
+
- 'Defined in module: sequencing_platforms'
|
|
832
|
+
data_processing_level:
|
|
833
|
+
description: Levels of processing applied to raw sequencing data
|
|
834
|
+
range: DataProcessingLevel
|
|
835
|
+
comments:
|
|
836
|
+
- 'Defined in module: sequencing_platforms'
|
|
837
|
+
energy_source:
|
|
838
|
+
description: Types of energy sources and generation methods
|
|
839
|
+
range: EnergySource
|
|
840
|
+
comments:
|
|
841
|
+
- 'Defined in module: energy'
|
|
842
|
+
energy_unit:
|
|
843
|
+
description: Units for measuring energy
|
|
844
|
+
range: EnergyUnit
|
|
845
|
+
comments:
|
|
846
|
+
- 'Defined in module: energy'
|
|
847
|
+
power_unit:
|
|
848
|
+
description: Units for measuring power (energy per time)
|
|
849
|
+
range: PowerUnit
|
|
850
|
+
comments:
|
|
851
|
+
- 'Defined in module: energy'
|
|
852
|
+
energy_efficiency_rating:
|
|
853
|
+
description: Energy efficiency ratings and standards
|
|
854
|
+
range: EnergyEfficiencyRating
|
|
855
|
+
comments:
|
|
856
|
+
- 'Defined in module: energy'
|
|
857
|
+
building_energy_standard:
|
|
858
|
+
description: Building energy efficiency standards and certifications
|
|
859
|
+
range: BuildingEnergyStandard
|
|
860
|
+
comments:
|
|
861
|
+
- 'Defined in module: energy'
|
|
862
|
+
grid:
|
|
863
|
+
description: Types of electrical grid systems
|
|
864
|
+
range: GridType
|
|
865
|
+
comments:
|
|
866
|
+
- 'Defined in module: energy'
|
|
867
|
+
energy_storage:
|
|
868
|
+
description: Types of energy storage systems
|
|
869
|
+
range: EnergyStorageType
|
|
870
|
+
comments:
|
|
871
|
+
- 'Defined in module: energy'
|
|
872
|
+
emission_scope:
|
|
873
|
+
description: Greenhouse gas emission scopes (GHG Protocol)
|
|
874
|
+
range: EmissionScope
|
|
875
|
+
comments:
|
|
876
|
+
- 'Defined in module: energy'
|
|
877
|
+
carbon_intensity:
|
|
878
|
+
description: Carbon intensity levels for energy sources
|
|
879
|
+
range: CarbonIntensity
|
|
880
|
+
comments:
|
|
881
|
+
- 'Defined in module: energy'
|
|
882
|
+
electricity_market:
|
|
883
|
+
description: Types of electricity markets and pricing
|
|
884
|
+
range: ElectricityMarket
|
|
885
|
+
comments:
|
|
886
|
+
- 'Defined in module: energy'
|
|
887
|
+
fossil_fuel_type:
|
|
888
|
+
description: Types of fossil fuels used for energy generation
|
|
889
|
+
range: FossilFuelTypeEnum
|
|
890
|
+
comments:
|
|
891
|
+
- 'Defined in module: fossil_fuels'
|
|
892
|
+
reaction_directionality:
|
|
893
|
+
description: The directionality of a chemical reaction or process
|
|
894
|
+
range: ReactionDirectionality
|
|
895
|
+
comments:
|
|
896
|
+
- 'Defined in module: reaction_directionality'
|
|
897
|
+
reaction_type:
|
|
898
|
+
description: Types of chemical reactions
|
|
899
|
+
range: ReactionTypeEnum
|
|
900
|
+
comments:
|
|
901
|
+
- 'Defined in module: reactions'
|
|
902
|
+
reaction_mechanism:
|
|
903
|
+
description: Reaction mechanism types
|
|
904
|
+
range: ReactionMechanismEnum
|
|
905
|
+
comments:
|
|
906
|
+
- 'Defined in module: reactions'
|
|
907
|
+
catalyst_type:
|
|
908
|
+
description: Types of catalysts
|
|
909
|
+
range: CatalystTypeEnum
|
|
910
|
+
comments:
|
|
911
|
+
- 'Defined in module: reactions'
|
|
912
|
+
reaction_condition:
|
|
913
|
+
description: Reaction conditions
|
|
914
|
+
range: ReactionConditionEnum
|
|
915
|
+
comments:
|
|
916
|
+
- 'Defined in module: reactions'
|
|
917
|
+
reaction_rate_order:
|
|
918
|
+
description: Reaction rate orders
|
|
919
|
+
range: ReactionRateOrderEnum
|
|
920
|
+
comments:
|
|
921
|
+
- 'Defined in module: reactions'
|
|
922
|
+
enzyme_class:
|
|
923
|
+
description: EC enzyme classification
|
|
924
|
+
range: EnzymeClassEnum
|
|
925
|
+
comments:
|
|
926
|
+
- 'Defined in module: reactions'
|
|
927
|
+
solvent_class:
|
|
928
|
+
description: Classes of solvents
|
|
929
|
+
range: SolventClassEnum
|
|
930
|
+
comments:
|
|
931
|
+
- 'Defined in module: reactions'
|
|
932
|
+
thermodynamic_parameter:
|
|
933
|
+
description: Thermodynamic parameters
|
|
934
|
+
range: ThermodynamicParameterEnum
|
|
935
|
+
comments:
|
|
936
|
+
- 'Defined in module: reactions'
|
|
937
|
+
subatomic_particle:
|
|
938
|
+
description: Fundamental and composite subatomic particles
|
|
939
|
+
range: SubatomicParticleEnum
|
|
940
|
+
comments:
|
|
941
|
+
- 'Defined in module: chemical_entities'
|
|
942
|
+
bond_type:
|
|
943
|
+
description: Types of chemical bonds
|
|
944
|
+
range: BondTypeEnum
|
|
945
|
+
comments:
|
|
946
|
+
- 'Defined in module: chemical_entities'
|
|
947
|
+
periodic_table_block:
|
|
948
|
+
description: Blocks of the periodic table
|
|
949
|
+
range: PeriodicTableBlockEnum
|
|
950
|
+
comments:
|
|
951
|
+
- 'Defined in module: chemical_entities'
|
|
952
|
+
element_family:
|
|
953
|
+
description: Chemical element families/groups
|
|
954
|
+
range: ElementFamilyEnum
|
|
955
|
+
comments:
|
|
956
|
+
- 'Defined in module: chemical_entities'
|
|
957
|
+
element_metallic_classification:
|
|
958
|
+
description: Metallic character classification
|
|
959
|
+
range: ElementMetallicClassificationEnum
|
|
960
|
+
comments:
|
|
961
|
+
- 'Defined in module: chemical_entities'
|
|
962
|
+
hard_or_soft:
|
|
963
|
+
description: HSAB (Hard Soft Acid Base) classification
|
|
964
|
+
range: HardOrSoftEnum
|
|
965
|
+
comments:
|
|
966
|
+
- 'Defined in module: chemical_entities'
|
|
967
|
+
bronsted_acid_base_role:
|
|
968
|
+
description: Brønsted-Lowry acid-base roles
|
|
969
|
+
range: BronstedAcidBaseRoleEnum
|
|
970
|
+
comments:
|
|
971
|
+
- 'Defined in module: chemical_entities'
|
|
972
|
+
lewis_acid_base_role:
|
|
973
|
+
description: Lewis acid-base roles
|
|
974
|
+
range: LewisAcidBaseRoleEnum
|
|
975
|
+
comments:
|
|
976
|
+
- 'Defined in module: chemical_entities'
|
|
977
|
+
oxidation_state:
|
|
978
|
+
description: Common oxidation states
|
|
979
|
+
range: OxidationStateEnum
|
|
980
|
+
comments:
|
|
981
|
+
- 'Defined in module: chemical_entities'
|
|
982
|
+
chirality:
|
|
983
|
+
description: Chirality/stereochemistry descriptors
|
|
984
|
+
range: ChiralityEnum
|
|
985
|
+
comments:
|
|
986
|
+
- 'Defined in module: chemical_entities'
|
|
987
|
+
nanostructure_morphology:
|
|
988
|
+
description: Types of nanostructure morphologies
|
|
989
|
+
range: NanostructureMorphologyEnum
|
|
990
|
+
comments:
|
|
991
|
+
- 'Defined in module: chemical_entities'
|
|
992
|
+
sentiment_classification:
|
|
993
|
+
description: Standard labels for sentiment analysis classification tasks
|
|
994
|
+
range: SentimentClassificationEnum
|
|
995
|
+
comments:
|
|
996
|
+
- 'Defined in module: sentiment_analysis'
|
|
997
|
+
fine_sentiment_classification:
|
|
998
|
+
description: Fine-grained sentiment analysis labels with intensity levels
|
|
999
|
+
range: FineSentimentClassificationEnum
|
|
1000
|
+
comments:
|
|
1001
|
+
- 'Defined in module: sentiment_analysis'
|
|
1002
|
+
basic_emotion:
|
|
1003
|
+
description: Ekman's six basic emotions commonly used in emotion recognition
|
|
1004
|
+
range: BasicEmotionEnum
|
|
1005
|
+
comments:
|
|
1006
|
+
- 'Defined in module: emotion_classification'
|
|
1007
|
+
extended_emotion:
|
|
1008
|
+
description: Extended emotion set including complex emotions
|
|
1009
|
+
range: ExtendedEmotionEnum
|
|
1010
|
+
comments:
|
|
1011
|
+
- 'Defined in module: emotion_classification'
|
|
1012
|
+
news_topic_category:
|
|
1013
|
+
description: Common news article topic categories
|
|
1014
|
+
range: NewsTopicCategoryEnum
|
|
1015
|
+
comments:
|
|
1016
|
+
- 'Defined in module: text_classification'
|
|
1017
|
+
toxicity_classification:
|
|
1018
|
+
description: Text toxicity classification labels
|
|
1019
|
+
range: ToxicityClassificationEnum
|
|
1020
|
+
comments:
|
|
1021
|
+
- 'Defined in module: text_classification'
|
|
1022
|
+
intent_classification:
|
|
1023
|
+
description: Common chatbot/NLU intent categories
|
|
1024
|
+
range: IntentClassificationEnum
|
|
1025
|
+
comments:
|
|
1026
|
+
- 'Defined in module: text_classification'
|
|
1027
|
+
quality_control:
|
|
1028
|
+
description: Quality control classification labels
|
|
1029
|
+
range: QualityControlEnum
|
|
1030
|
+
comments:
|
|
1031
|
+
- 'Defined in module: quality_control'
|
|
1032
|
+
defect_classification:
|
|
1033
|
+
description: Manufacturing defect classification
|
|
1034
|
+
range: DefectClassificationEnum
|
|
1035
|
+
comments:
|
|
1036
|
+
- 'Defined in module: quality_control'
|
|
1037
|
+
priority_level:
|
|
1038
|
+
description: Standard priority levels for task/issue classification
|
|
1039
|
+
range: PriorityLevelEnum
|
|
1040
|
+
comments:
|
|
1041
|
+
- 'Defined in module: priority_severity'
|
|
1042
|
+
severity_level:
|
|
1043
|
+
description: Severity levels for incident/bug classification
|
|
1044
|
+
range: SeverityLevelEnum
|
|
1045
|
+
comments:
|
|
1046
|
+
- 'Defined in module: priority_severity'
|
|
1047
|
+
binary_classification:
|
|
1048
|
+
description: Generic binary classification labels
|
|
1049
|
+
range: BinaryClassificationEnum
|
|
1050
|
+
comments:
|
|
1051
|
+
- 'Defined in module: binary_classification'
|
|
1052
|
+
spam_classification:
|
|
1053
|
+
description: Standard labels for spam/ham email classification
|
|
1054
|
+
range: SpamClassificationEnum
|
|
1055
|
+
comments:
|
|
1056
|
+
- 'Defined in module: binary_classification'
|
|
1057
|
+
anomaly_detection:
|
|
1058
|
+
description: Labels for anomaly detection tasks
|
|
1059
|
+
range: AnomalyDetectionEnum
|
|
1060
|
+
comments:
|
|
1061
|
+
- 'Defined in module: binary_classification'
|
|
1062
|
+
churn_classification:
|
|
1063
|
+
description: Customer churn prediction labels
|
|
1064
|
+
range: ChurnClassificationEnum
|
|
1065
|
+
comments:
|
|
1066
|
+
- 'Defined in module: binary_classification'
|
|
1067
|
+
fraud_detection:
|
|
1068
|
+
description: Fraud detection classification labels
|
|
1069
|
+
range: FraudDetectionEnum
|
|
1070
|
+
comments:
|
|
1071
|
+
- 'Defined in module: binary_classification'
|
|
1072
|
+
air_pollutant:
|
|
1073
|
+
description: Common air pollutants and air quality indicators
|
|
1074
|
+
range: AirPollutantEnum
|
|
1075
|
+
comments:
|
|
1076
|
+
- 'Defined in module: valuesets-environmental-health-exposures'
|
|
1077
|
+
pesticide_type:
|
|
1078
|
+
description: Categories of pesticides by target organism or chemical class
|
|
1079
|
+
range: PesticideTypeEnum
|
|
1080
|
+
comments:
|
|
1081
|
+
- 'Defined in module: valuesets-environmental-health-exposures'
|
|
1082
|
+
heavy_metal:
|
|
1083
|
+
description: Heavy metals of environmental health concern
|
|
1084
|
+
range: HeavyMetalEnum
|
|
1085
|
+
comments:
|
|
1086
|
+
- 'Defined in module: valuesets-environmental-health-exposures'
|
|
1087
|
+
exposure_route:
|
|
1088
|
+
description: Routes by which exposure to environmental agents occurs
|
|
1089
|
+
range: ExposureRouteEnum
|
|
1090
|
+
comments:
|
|
1091
|
+
- 'Defined in module: valuesets-environmental-health-exposures'
|
|
1092
|
+
exposure_source:
|
|
1093
|
+
description: Common sources of environmental exposures
|
|
1094
|
+
range: ExposureSourceEnum
|
|
1095
|
+
comments:
|
|
1096
|
+
- 'Defined in module: valuesets-environmental-health-exposures'
|
|
1097
|
+
water_contaminant:
|
|
1098
|
+
description: Common water contaminants
|
|
1099
|
+
range: WaterContaminantEnum
|
|
1100
|
+
comments:
|
|
1101
|
+
- 'Defined in module: valuesets-environmental-health-exposures'
|
|
1102
|
+
endocrine_disruptor:
|
|
1103
|
+
description: Common endocrine disrupting chemicals
|
|
1104
|
+
range: EndocrineDisruptorEnum
|
|
1105
|
+
comments:
|
|
1106
|
+
- 'Defined in module: valuesets-environmental-health-exposures'
|
|
1107
|
+
exposure_duration:
|
|
1108
|
+
description: Duration categories for environmental exposures
|
|
1109
|
+
range: ExposureDurationEnum
|
|
1110
|
+
comments:
|
|
1111
|
+
- 'Defined in module: valuesets-environmental-health-exposures'
|
|
1112
|
+
synthesis_method:
|
|
1113
|
+
description: Common material synthesis and processing methods
|
|
1114
|
+
range: SynthesisMethodEnum
|
|
1115
|
+
comments:
|
|
1116
|
+
- 'Defined in module: synthesis_methods'
|
|
1117
|
+
crystal_growth_method:
|
|
1118
|
+
description: Methods for growing single crystals
|
|
1119
|
+
range: CrystalGrowthMethodEnum
|
|
1120
|
+
comments:
|
|
1121
|
+
- 'Defined in module: synthesis_methods'
|
|
1122
|
+
additive_manufacturing:
|
|
1123
|
+
description: 3D printing and additive manufacturing methods
|
|
1124
|
+
range: AdditiveManufacturingEnum
|
|
1125
|
+
comments:
|
|
1126
|
+
- 'Defined in module: synthesis_methods'
|
|
1127
|
+
material_class:
|
|
1128
|
+
description: Major classes of materials
|
|
1129
|
+
range: MaterialClassEnum
|
|
1130
|
+
comments:
|
|
1131
|
+
- 'Defined in module: material_types'
|
|
1132
|
+
polymer_type:
|
|
1133
|
+
description: Types of polymer materials
|
|
1134
|
+
range: PolymerTypeEnum
|
|
1135
|
+
comments:
|
|
1136
|
+
- 'Defined in module: material_types'
|
|
1137
|
+
metal_type:
|
|
1138
|
+
description: Types of metallic materials
|
|
1139
|
+
range: MetalTypeEnum
|
|
1140
|
+
comments:
|
|
1141
|
+
- 'Defined in module: material_types'
|
|
1142
|
+
composite_type:
|
|
1143
|
+
description: Types of composite materials
|
|
1144
|
+
range: CompositeTypeEnum
|
|
1145
|
+
comments:
|
|
1146
|
+
- 'Defined in module: material_types'
|
|
1147
|
+
crystal_system:
|
|
1148
|
+
description: The seven crystal systems in crystallography
|
|
1149
|
+
range: CrystalSystemEnum
|
|
1150
|
+
comments:
|
|
1151
|
+
- 'Defined in module: crystal_structures'
|
|
1152
|
+
bravais_lattice:
|
|
1153
|
+
description: The 14 Bravais lattices describing all possible crystal lattices
|
|
1154
|
+
range: BravaisLatticeEnum
|
|
1155
|
+
comments:
|
|
1156
|
+
- 'Defined in module: crystal_structures'
|
|
1157
|
+
microscopy_method:
|
|
1158
|
+
description: Microscopy techniques for material characterization
|
|
1159
|
+
range: MicroscopyMethodEnum
|
|
1160
|
+
comments:
|
|
1161
|
+
- 'Defined in module: characterization_methods'
|
|
1162
|
+
spectroscopy_method:
|
|
1163
|
+
description: Spectroscopy techniques for material analysis
|
|
1164
|
+
range: SpectroscopyMethodEnum
|
|
1165
|
+
comments:
|
|
1166
|
+
- 'Defined in module: characterization_methods'
|
|
1167
|
+
thermal_analysis_method:
|
|
1168
|
+
description: Thermal analysis techniques
|
|
1169
|
+
range: ThermalAnalysisMethodEnum
|
|
1170
|
+
comments:
|
|
1171
|
+
- 'Defined in module: characterization_methods'
|
|
1172
|
+
mechanical_testing_method:
|
|
1173
|
+
description: Mechanical testing methods
|
|
1174
|
+
range: MechanicalTestingMethodEnum
|
|
1175
|
+
comments:
|
|
1176
|
+
- 'Defined in module: characterization_methods'
|
|
1177
|
+
traditional_pigment:
|
|
1178
|
+
description: Traditional artist pigments and their colors
|
|
1179
|
+
range: TraditionalPigmentEnum
|
|
1180
|
+
comments:
|
|
1181
|
+
- 'Defined in module: pigments_dyes'
|
|
1182
|
+
industrial_dye:
|
|
1183
|
+
description: Industrial and textile dyes
|
|
1184
|
+
range: IndustrialDyeEnum
|
|
1185
|
+
comments:
|
|
1186
|
+
- 'Defined in module: pigments_dyes'
|
|
1187
|
+
food_coloring:
|
|
1188
|
+
description: Food coloring and natural food dyes
|
|
1189
|
+
range: FoodColoringEnum
|
|
1190
|
+
comments:
|
|
1191
|
+
- 'Defined in module: pigments_dyes'
|
|
1192
|
+
automobile_paint_color:
|
|
1193
|
+
description: Common automobile paint colors
|
|
1194
|
+
range: AutomobilePaintColorEnum
|
|
1195
|
+
comments:
|
|
1196
|
+
- 'Defined in module: pigments_dyes'
|
|
1197
|
+
electrical_conductivity:
|
|
1198
|
+
description: Classification of materials by electrical conductivity
|
|
1199
|
+
range: ElectricalConductivityEnum
|
|
1200
|
+
comments:
|
|
1201
|
+
- 'Defined in module: material_properties'
|
|
1202
|
+
magnetic_property:
|
|
1203
|
+
description: Classification of materials by magnetic properties
|
|
1204
|
+
range: MagneticPropertyEnum
|
|
1205
|
+
comments:
|
|
1206
|
+
- 'Defined in module: material_properties'
|
|
1207
|
+
optical_property:
|
|
1208
|
+
description: Optical properties of materials
|
|
1209
|
+
range: OpticalPropertyEnum
|
|
1210
|
+
comments:
|
|
1211
|
+
- 'Defined in module: material_properties'
|
|
1212
|
+
thermal_conductivity:
|
|
1213
|
+
description: Classification by thermal conductivity
|
|
1214
|
+
range: ThermalConductivityEnum
|
|
1215
|
+
comments:
|
|
1216
|
+
- 'Defined in module: material_properties'
|
|
1217
|
+
mechanical_behavior:
|
|
1218
|
+
description: Mechanical behavior of materials under stress
|
|
1219
|
+
range: MechanicalBehaviorEnum
|
|
1220
|
+
comments:
|
|
1221
|
+
- 'Defined in module: material_properties'
|
|
1222
|
+
publication:
|
|
1223
|
+
description: Types of academic and research publications
|
|
1224
|
+
range: PublicationType
|
|
1225
|
+
comments:
|
|
1226
|
+
- 'Defined in module: research'
|
|
1227
|
+
peer_review_status:
|
|
1228
|
+
description: Status of peer review process
|
|
1229
|
+
range: PeerReviewStatus
|
|
1230
|
+
comments:
|
|
1231
|
+
- 'Defined in module: research'
|
|
1232
|
+
academic_degree:
|
|
1233
|
+
description: Academic degrees and qualifications
|
|
1234
|
+
range: AcademicDegree
|
|
1235
|
+
comments:
|
|
1236
|
+
- 'Defined in module: research'
|
|
1237
|
+
license:
|
|
1238
|
+
description: Common software and content licenses
|
|
1239
|
+
range: LicenseType
|
|
1240
|
+
comments:
|
|
1241
|
+
- 'Defined in module: research'
|
|
1242
|
+
research_field:
|
|
1243
|
+
description: Major research fields and disciplines
|
|
1244
|
+
range: ResearchField
|
|
1245
|
+
comments:
|
|
1246
|
+
- 'Defined in module: research'
|
|
1247
|
+
funding:
|
|
1248
|
+
description: Types of research funding
|
|
1249
|
+
range: FundingType
|
|
1250
|
+
comments:
|
|
1251
|
+
- 'Defined in module: research'
|
|
1252
|
+
manuscript_section:
|
|
1253
|
+
description: Sections of a scientific manuscript or publication
|
|
1254
|
+
range: ManuscriptSection
|
|
1255
|
+
comments:
|
|
1256
|
+
- 'Defined in module: research'
|
|
1257
|
+
research_role:
|
|
1258
|
+
description: Roles in research and authorship
|
|
1259
|
+
range: ResearchRole
|
|
1260
|
+
comments:
|
|
1261
|
+
- 'Defined in module: research'
|
|
1262
|
+
open_access:
|
|
1263
|
+
description: Types of open access publishing
|
|
1264
|
+
range: OpenAccessType
|
|
1265
|
+
comments:
|
|
1266
|
+
- 'Defined in module: research'
|
|
1267
|
+
citation_style:
|
|
1268
|
+
description: Common citation and reference styles
|
|
1269
|
+
range: CitationStyle
|
|
1270
|
+
comments:
|
|
1271
|
+
- 'Defined in module: research'
|
|
1272
|
+
day_of_week:
|
|
1273
|
+
description: Days of the week following ISO 8601 standard (Monday = 1)
|
|
1274
|
+
range: DayOfWeek
|
|
1275
|
+
comments:
|
|
1276
|
+
- 'Defined in module: temporal'
|
|
1277
|
+
month:
|
|
1278
|
+
description: Months of the year
|
|
1279
|
+
range: Month
|
|
1280
|
+
comments:
|
|
1281
|
+
- 'Defined in module: temporal'
|
|
1282
|
+
quarter:
|
|
1283
|
+
description: Calendar quarters
|
|
1284
|
+
range: Quarter
|
|
1285
|
+
comments:
|
|
1286
|
+
- 'Defined in module: temporal'
|
|
1287
|
+
season:
|
|
1288
|
+
description: Seasons of the year (Northern Hemisphere)
|
|
1289
|
+
range: Season
|
|
1290
|
+
comments:
|
|
1291
|
+
- 'Defined in module: temporal'
|
|
1292
|
+
time_period:
|
|
1293
|
+
description: Common time periods and intervals
|
|
1294
|
+
range: TimePeriod
|
|
1295
|
+
comments:
|
|
1296
|
+
- 'Defined in module: temporal'
|
|
1297
|
+
time_unit:
|
|
1298
|
+
description: Units of time measurement
|
|
1299
|
+
range: TimeUnitEnum
|
|
1300
|
+
comments:
|
|
1301
|
+
- 'Defined in module: measurements'
|
|
1302
|
+
time_of_day:
|
|
1303
|
+
description: Common times of day
|
|
1304
|
+
range: TimeOfDay
|
|
1305
|
+
comments:
|
|
1306
|
+
- 'Defined in module: temporal'
|
|
1307
|
+
business_time_frame:
|
|
1308
|
+
description: Common business and financial time frames
|
|
1309
|
+
range: BusinessTimeFrame
|
|
1310
|
+
comments:
|
|
1311
|
+
- 'Defined in module: temporal'
|
|
1312
|
+
geological_era:
|
|
1313
|
+
description: Major geological eras
|
|
1314
|
+
range: GeologicalEra
|
|
1315
|
+
comments:
|
|
1316
|
+
- 'Defined in module: temporal'
|
|
1317
|
+
historical_period:
|
|
1318
|
+
description: Major historical periods
|
|
1319
|
+
range: HistoricalPeriod
|
|
1320
|
+
comments:
|
|
1321
|
+
- 'Defined in module: temporal'
|
|
1322
|
+
length_unit:
|
|
1323
|
+
description: Units of length/distance measurement
|
|
1324
|
+
range: LengthUnitEnum
|
|
1325
|
+
comments:
|
|
1326
|
+
- 'Defined in module: measurements'
|
|
1327
|
+
mass_unit:
|
|
1328
|
+
description: Units of mass measurement
|
|
1329
|
+
range: MassUnitEnum
|
|
1330
|
+
comments:
|
|
1331
|
+
- 'Defined in module: measurements'
|
|
1332
|
+
volume_unit:
|
|
1333
|
+
description: Units of volume measurement
|
|
1334
|
+
range: VolumeUnitEnum
|
|
1335
|
+
comments:
|
|
1336
|
+
- 'Defined in module: measurements'
|
|
1337
|
+
temperature_unit:
|
|
1338
|
+
description: Units of temperature measurement
|
|
1339
|
+
range: TemperatureUnitEnum
|
|
1340
|
+
comments:
|
|
1341
|
+
- 'Defined in module: measurements'
|
|
1342
|
+
pressure_unit:
|
|
1343
|
+
description: Units of pressure measurement
|
|
1344
|
+
range: PressureUnitEnum
|
|
1345
|
+
comments:
|
|
1346
|
+
- 'Defined in module: measurements'
|
|
1347
|
+
concentration_unit:
|
|
1348
|
+
description: Units of concentration measurement
|
|
1349
|
+
range: ConcentrationUnitEnum
|
|
1350
|
+
comments:
|
|
1351
|
+
- 'Defined in module: measurements'
|
|
1352
|
+
frequency_unit:
|
|
1353
|
+
description: Units of frequency measurement
|
|
1354
|
+
range: FrequencyUnitEnum
|
|
1355
|
+
comments:
|
|
1356
|
+
- 'Defined in module: measurements'
|
|
1357
|
+
angle_unit:
|
|
1358
|
+
description: Units of angle measurement
|
|
1359
|
+
range: AngleUnitEnum
|
|
1360
|
+
comments:
|
|
1361
|
+
- 'Defined in module: measurements'
|
|
1362
|
+
data_size_unit:
|
|
1363
|
+
description: Units of digital data size
|
|
1364
|
+
range: DataSizeUnitEnum
|
|
1365
|
+
comments:
|
|
1366
|
+
- 'Defined in module: measurements'
|
|
1367
|
+
person_status:
|
|
1368
|
+
description: Vital status of a person (living or deceased)
|
|
1369
|
+
range: PersonStatusEnum
|
|
1370
|
+
comments:
|
|
1371
|
+
- 'Defined in module: person_status'
|
|
1372
|
+
basic_color:
|
|
1373
|
+
description: Basic color names commonly used in everyday language
|
|
1374
|
+
range: BasicColorEnum
|
|
1375
|
+
comments:
|
|
1376
|
+
- 'Defined in module: colors'
|
|
1377
|
+
web_color:
|
|
1378
|
+
description: Standard HTML/CSS named colors (147 colors)
|
|
1379
|
+
range: WebColorEnum
|
|
1380
|
+
comments:
|
|
1381
|
+
- 'Defined in module: colors'
|
|
1382
|
+
x11_color:
|
|
1383
|
+
description: X11/Unix system colors (extended set)
|
|
1384
|
+
range: X11ColorEnum
|
|
1385
|
+
comments:
|
|
1386
|
+
- 'Defined in module: colors'
|
|
1387
|
+
color_space:
|
|
1388
|
+
description: Color space and model types
|
|
1389
|
+
range: ColorSpaceEnum
|
|
1390
|
+
comments:
|
|
1391
|
+
- 'Defined in module: colors'
|
|
1392
|
+
blood_type:
|
|
1393
|
+
description: ABO and Rh blood group classifications
|
|
1394
|
+
range: BloodTypeEnum
|
|
1395
|
+
comments:
|
|
1396
|
+
- 'Defined in module: clinical'
|
|
1397
|
+
anatomical_system:
|
|
1398
|
+
description: Major anatomical systems of the body
|
|
1399
|
+
range: AnatomicalSystemEnum
|
|
1400
|
+
comments:
|
|
1401
|
+
- 'Defined in module: clinical'
|
|
1402
|
+
medical_specialty:
|
|
1403
|
+
description: The medical specialty classification
|
|
1404
|
+
range: MedicalSpecialtyEnum
|
|
1405
|
+
comments:
|
|
1406
|
+
- 'Defined in module: clinical'
|
|
1407
|
+
drug_route:
|
|
1408
|
+
description: The drug route classification
|
|
1409
|
+
range: DrugRouteEnum
|
|
1410
|
+
comments:
|
|
1411
|
+
- 'Defined in module: clinical'
|
|
1412
|
+
vital_sign:
|
|
1413
|
+
description: The vital sign classification
|
|
1414
|
+
range: VitalSignEnum
|
|
1415
|
+
comments:
|
|
1416
|
+
- 'Defined in module: clinical'
|
|
1417
|
+
diagnostic_test_type:
|
|
1418
|
+
description: The diagnostic test type classification
|
|
1419
|
+
range: DiagnosticTestTypeEnum
|
|
1420
|
+
comments:
|
|
1421
|
+
- 'Defined in module: clinical'
|
|
1422
|
+
symptom_severity:
|
|
1423
|
+
description: The symptom severity classification
|
|
1424
|
+
range: SymptomSeverityEnum
|
|
1425
|
+
comments:
|
|
1426
|
+
- 'Defined in module: clinical'
|
|
1427
|
+
allergy_type:
|
|
1428
|
+
description: The allergy type classification
|
|
1429
|
+
range: AllergyTypeEnum
|
|
1430
|
+
comments:
|
|
1431
|
+
- 'Defined in module: clinical'
|
|
1432
|
+
vaccine_type:
|
|
1433
|
+
description: The vaccine type classification
|
|
1434
|
+
range: VaccineTypeEnum
|
|
1435
|
+
comments:
|
|
1436
|
+
- 'Defined in module: clinical'
|
|
1437
|
+
bmi_classification:
|
|
1438
|
+
description: The bmi classification classification
|
|
1439
|
+
range: BMIClassificationEnum
|
|
1440
|
+
comments:
|
|
1441
|
+
- 'Defined in module: clinical'
|
|
1442
|
+
mining:
|
|
1443
|
+
description: Types of mining operations
|
|
1444
|
+
range: MiningType
|
|
1445
|
+
comments:
|
|
1446
|
+
- 'Defined in module: mining'
|
|
1447
|
+
mineral_category:
|
|
1448
|
+
description: Categories of minerals and materials
|
|
1449
|
+
range: MineralCategory
|
|
1450
|
+
comments:
|
|
1451
|
+
- 'Defined in module: mining'
|
|
1452
|
+
critical_mineral:
|
|
1453
|
+
description: Critical minerals essential for economic and national security, particularly for clean energy, defense, and
|
|
1454
|
+
technology applications
|
|
1455
|
+
range: CriticalMineral
|
|
1456
|
+
comments:
|
|
1457
|
+
- 'Defined in module: mining'
|
|
1458
|
+
common_mineral:
|
|
1459
|
+
description: Common minerals extracted through mining
|
|
1460
|
+
range: CommonMineral
|
|
1461
|
+
comments:
|
|
1462
|
+
- 'Defined in module: mining'
|
|
1463
|
+
mining_equipment:
|
|
1464
|
+
description: Types of mining equipment
|
|
1465
|
+
range: MiningEquipment
|
|
1466
|
+
comments:
|
|
1467
|
+
- 'Defined in module: mining'
|
|
1468
|
+
ore_grade:
|
|
1469
|
+
description: Classification of ore grades
|
|
1470
|
+
range: OreGrade
|
|
1471
|
+
comments:
|
|
1472
|
+
- 'Defined in module: mining'
|
|
1473
|
+
mining_phase:
|
|
1474
|
+
description: Phases of mining operations
|
|
1475
|
+
range: MiningPhase
|
|
1476
|
+
comments:
|
|
1477
|
+
- 'Defined in module: mining'
|
|
1478
|
+
mining_hazard:
|
|
1479
|
+
description: Mining-related hazards and risks
|
|
1480
|
+
range: MiningHazard
|
|
1481
|
+
comments:
|
|
1482
|
+
- 'Defined in module: mining'
|
|
1483
|
+
environmental_impact:
|
|
1484
|
+
description: Environmental impacts of mining
|
|
1485
|
+
range: EnvironmentalImpact
|
|
1486
|
+
comments:
|
|
1487
|
+
- 'Defined in module: mining'
|
|
1488
|
+
extractive_industry_facility_type:
|
|
1489
|
+
description: Types of extractive industry facilities
|
|
1490
|
+
range: ExtractiveIndustryFacilityTypeEnum
|
|
1491
|
+
comments:
|
|
1492
|
+
- 'Defined in module: extractive_industry'
|
|
1493
|
+
extractive_industry_product_type:
|
|
1494
|
+
description: Types of products extracted from extractive industry facilities
|
|
1495
|
+
range: ExtractiveIndustryProductTypeEnum
|
|
1496
|
+
comments:
|
|
1497
|
+
- 'Defined in module: extractive_industry'
|
|
1498
|
+
mining_method:
|
|
1499
|
+
description: Methods used for extracting minerals from the earth
|
|
1500
|
+
range: MiningMethodEnum
|
|
1501
|
+
comments:
|
|
1502
|
+
- 'Defined in module: extractive_industry'
|
|
1503
|
+
well_type:
|
|
1504
|
+
description: Types of wells used for extracting fluid resources
|
|
1505
|
+
range: WellTypeEnum
|
|
1506
|
+
comments:
|
|
1507
|
+
- 'Defined in module: extractive_industry'
|
|
1508
|
+
safety_color:
|
|
1509
|
+
description: ANSI/ISO standard safety colors
|
|
1510
|
+
range: SafetyColorEnum
|
|
1511
|
+
comments:
|
|
1512
|
+
- 'Defined in module: safety_colors'
|
|
1513
|
+
traffic_light_color:
|
|
1514
|
+
description: Traffic signal colors (international)
|
|
1515
|
+
range: TrafficLightColorEnum
|
|
1516
|
+
comments:
|
|
1517
|
+
- 'Defined in module: safety_colors'
|
|
1518
|
+
hazmat_color:
|
|
1519
|
+
description: Hazardous materials placarding colors (DOT/UN)
|
|
1520
|
+
range: HazmatColorEnum
|
|
1521
|
+
comments:
|
|
1522
|
+
- 'Defined in module: safety_colors'
|
|
1523
|
+
fire_safety_color:
|
|
1524
|
+
description: Fire safety equipment and signage colors
|
|
1525
|
+
range: FireSafetyColorEnum
|
|
1526
|
+
comments:
|
|
1527
|
+
- 'Defined in module: safety_colors'
|
|
1528
|
+
maritime_signal_color:
|
|
1529
|
+
description: Maritime signal and navigation colors
|
|
1530
|
+
range: MaritimeSignalColorEnum
|
|
1531
|
+
comments:
|
|
1532
|
+
- 'Defined in module: safety_colors'
|
|
1533
|
+
aviation_light_color:
|
|
1534
|
+
description: Aviation lighting colors
|
|
1535
|
+
range: AviationLightColorEnum
|
|
1536
|
+
comments:
|
|
1537
|
+
- 'Defined in module: safety_colors'
|
|
1538
|
+
electrical_wire_color:
|
|
1539
|
+
description: Electrical wire color codes (US/International)
|
|
1540
|
+
range: ElectricalWireColorEnum
|
|
1541
|
+
comments:
|
|
1542
|
+
- 'Defined in module: safety_colors'
|
|
1543
|
+
karyotypic_sex:
|
|
1544
|
+
description: Karyotypic sex of an individual based on chromosome composition
|
|
1545
|
+
range: KaryotypicSexEnum
|
|
1546
|
+
comments:
|
|
1547
|
+
- 'Defined in module: phenopackets'
|
|
1548
|
+
phenotypic_sex:
|
|
1549
|
+
description: Phenotypic sex of an individual based on observable characteristics
|
|
1550
|
+
range: PhenotypicSexEnum
|
|
1551
|
+
comments:
|
|
1552
|
+
- 'Defined in module: phenopackets'
|
|
1553
|
+
allelic_state:
|
|
1554
|
+
description: Allelic state/zygosity of a variant or genetic feature
|
|
1555
|
+
range: AllelicStateEnum
|
|
1556
|
+
comments:
|
|
1557
|
+
- 'Defined in module: phenopackets'
|
|
1558
|
+
laterality:
|
|
1559
|
+
description: Laterality/sidedness of a finding or anatomical structure
|
|
1560
|
+
range: LateralityEnum
|
|
1561
|
+
comments:
|
|
1562
|
+
- 'Defined in module: phenopackets'
|
|
1563
|
+
onset_timing:
|
|
1564
|
+
description: Timing of disease or phenotype onset relative to developmental stages
|
|
1565
|
+
range: OnsetTimingEnum
|
|
1566
|
+
comments:
|
|
1567
|
+
- 'Defined in module: phenopackets'
|
|
1568
|
+
acmg_pathogenicity:
|
|
1569
|
+
description: ACMG/AMP variant pathogenicity classification for clinical genetics
|
|
1570
|
+
range: ACMGPathogenicityEnum
|
|
1571
|
+
comments:
|
|
1572
|
+
- 'Defined in module: phenopackets'
|
|
1573
|
+
therapeutic_actionability:
|
|
1574
|
+
description: Clinical actionability of a genetic finding for treatment decisions
|
|
1575
|
+
range: TherapeuticActionabilityEnum
|
|
1576
|
+
comments:
|
|
1577
|
+
- 'Defined in module: phenopackets'
|
|
1578
|
+
interpretation_progress:
|
|
1579
|
+
description: Progress status of clinical interpretation or diagnosis
|
|
1580
|
+
range: InterpretationProgressEnum
|
|
1581
|
+
comments:
|
|
1582
|
+
- 'Defined in module: phenopackets'
|
|
1583
|
+
regimen_status:
|
|
1584
|
+
description: Status of a therapeutic regimen or treatment protocol
|
|
1585
|
+
range: RegimenStatusEnum
|
|
1586
|
+
comments:
|
|
1587
|
+
- 'Defined in module: phenopackets'
|
|
1588
|
+
drug_response:
|
|
1589
|
+
description: Response categories for drug treatment outcomes
|
|
1590
|
+
range: DrugResponseEnum
|
|
1591
|
+
comments:
|
|
1592
|
+
- 'Defined in module: phenopackets'
|
|
1593
|
+
race_omb1997:
|
|
1594
|
+
description: Race categories following OMB 1997 standards used by NIH and federal agencies
|
|
1595
|
+
range: RaceOMB1997Enum
|
|
1596
|
+
comments:
|
|
1597
|
+
- 'Defined in module: nih_demographics'
|
|
1598
|
+
ethnicity_omb1997:
|
|
1599
|
+
description: Ethnicity categories following OMB 1997 standards used by NIH and federal agencies
|
|
1600
|
+
range: EthnicityOMB1997Enum
|
|
1601
|
+
comments:
|
|
1602
|
+
- 'Defined in module: nih_demographics'
|
|
1603
|
+
biological_sex:
|
|
1604
|
+
description: Biological sex assigned at birth based on anatomical and physiological traits
|
|
1605
|
+
range: BiologicalSexEnum
|
|
1606
|
+
comments:
|
|
1607
|
+
- 'Defined in module: nih_demographics'
|
|
1608
|
+
age_group:
|
|
1609
|
+
description: Standard age groups used in NIH clinical research, particularly NINDS CDEs
|
|
1610
|
+
range: AgeGroupEnum
|
|
1611
|
+
comments:
|
|
1612
|
+
- 'Defined in module: nih_demographics'
|
|
1613
|
+
participant_vital_status:
|
|
1614
|
+
description: Vital status of a research participant in clinical studies
|
|
1615
|
+
range: ParticipantVitalStatusEnum
|
|
1616
|
+
comments:
|
|
1617
|
+
- 'Defined in module: nih_demographics'
|
|
1618
|
+
recruitment_status:
|
|
1619
|
+
description: Clinical trial or study recruitment status per NIH/ClinicalTrials
|
|
1620
|
+
range: RecruitmentStatusEnum
|
|
1621
|
+
comments:
|
|
1622
|
+
- 'Defined in module: nih_demographics'
|
|
1623
|
+
study_phase:
|
|
1624
|
+
description: Clinical trial phases per FDA and NIH definitions
|
|
1625
|
+
range: StudyPhaseEnum
|
|
1626
|
+
comments:
|
|
1627
|
+
- 'Defined in module: nih_demographics'
|
|
1628
|
+
image_file_format:
|
|
1629
|
+
description: Common image file formats
|
|
1630
|
+
range: ImageFileFormatEnum
|
|
1631
|
+
comments:
|
|
1632
|
+
- 'Defined in module: file_formats'
|
|
1633
|
+
document_format:
|
|
1634
|
+
description: Document and text file formats
|
|
1635
|
+
range: DocumentFormatEnum
|
|
1636
|
+
comments:
|
|
1637
|
+
- 'Defined in module: file_formats'
|
|
1638
|
+
data_format:
|
|
1639
|
+
description: Structured data file formats
|
|
1640
|
+
range: DataFormatEnum
|
|
1641
|
+
comments:
|
|
1642
|
+
- 'Defined in module: file_formats'
|
|
1643
|
+
archive_format:
|
|
1644
|
+
description: Archive and compression formats
|
|
1645
|
+
range: ArchiveFormatEnum
|
|
1646
|
+
comments:
|
|
1647
|
+
- 'Defined in module: file_formats'
|
|
1648
|
+
video_format:
|
|
1649
|
+
description: Video file formats
|
|
1650
|
+
range: VideoFormatEnum
|
|
1651
|
+
comments:
|
|
1652
|
+
- 'Defined in module: file_formats'
|
|
1653
|
+
audio_format:
|
|
1654
|
+
description: Audio file formats
|
|
1655
|
+
range: AudioFormatEnum
|
|
1656
|
+
comments:
|
|
1657
|
+
- 'Defined in module: file_formats'
|
|
1658
|
+
programming_language_file:
|
|
1659
|
+
description: Programming language source file extensions
|
|
1660
|
+
range: ProgrammingLanguageFileEnum
|
|
1661
|
+
comments:
|
|
1662
|
+
- 'Defined in module: file_formats'
|
|
1663
|
+
network_protocol:
|
|
1664
|
+
description: Network communication protocols
|
|
1665
|
+
range: NetworkProtocolEnum
|
|
1666
|
+
comments:
|
|
1667
|
+
- 'Defined in module: file_formats'
|
|
1668
|
+
mime:
|
|
1669
|
+
description: Common MIME types for various file formats
|
|
1670
|
+
range: MimeType
|
|
1671
|
+
comments:
|
|
1672
|
+
- 'Defined in module: mime_types'
|
|
1673
|
+
mime_type_category:
|
|
1674
|
+
description: Categories of MIME types
|
|
1675
|
+
range: MimeTypeCategory
|
|
1676
|
+
comments:
|
|
1677
|
+
- 'Defined in module: mime_types'
|
|
1678
|
+
text_charset:
|
|
1679
|
+
description: Character encodings for text content
|
|
1680
|
+
range: TextCharset
|
|
1681
|
+
comments:
|
|
1682
|
+
- 'Defined in module: mime_types'
|
|
1683
|
+
compression:
|
|
1684
|
+
description: Compression types used with Content-Encoding
|
|
1685
|
+
range: CompressionType
|
|
1686
|
+
comments:
|
|
1687
|
+
- 'Defined in module: mime_types'
|
|
1688
|
+
technology_readiness_level:
|
|
1689
|
+
description: NASA's Technology Readiness Level scale for assessing the maturity of technologies from basic research through
|
|
1690
|
+
operational deployment
|
|
1691
|
+
range: TechnologyReadinessLevel
|
|
1692
|
+
comments:
|
|
1693
|
+
- 'Defined in module: maturity_levels'
|
|
1694
|
+
software_maturity_level:
|
|
1695
|
+
description: General software maturity assessment levels
|
|
1696
|
+
range: SoftwareMaturityLevel
|
|
1697
|
+
comments:
|
|
1698
|
+
- 'Defined in module: maturity_levels'
|
|
1699
|
+
capability_maturity_level:
|
|
1700
|
+
description: CMMI levels for assessing organizational process maturity in software development
|
|
1701
|
+
range: CapabilityMaturityLevel
|
|
1702
|
+
comments:
|
|
1703
|
+
- 'Defined in module: maturity_levels'
|
|
1704
|
+
standards_maturity_level:
|
|
1705
|
+
description: Maturity levels for standards and specifications
|
|
1706
|
+
range: StandardsMaturityLevel
|
|
1707
|
+
comments:
|
|
1708
|
+
- 'Defined in module: maturity_levels'
|
|
1709
|
+
project_maturity_level:
|
|
1710
|
+
description: General project development maturity assessment
|
|
1711
|
+
range: ProjectMaturityLevel
|
|
1712
|
+
comments:
|
|
1713
|
+
- 'Defined in module: maturity_levels'
|
|
1714
|
+
data_maturity_level:
|
|
1715
|
+
description: Levels of data quality, governance, and organizational maturity
|
|
1716
|
+
range: DataMaturityLevel
|
|
1717
|
+
comments:
|
|
1718
|
+
- 'Defined in module: maturity_levels'
|
|
1719
|
+
open_source_maturity_level:
|
|
1720
|
+
description: Maturity assessment for open source projects
|
|
1721
|
+
range: OpenSourceMaturityLevel
|
|
1722
|
+
comments:
|
|
1723
|
+
- 'Defined in module: maturity_levels'
|
|
1724
|
+
state_of_matter:
|
|
1725
|
+
description: The physical state or phase of matter
|
|
1726
|
+
range: StateOfMatterEnum
|
|
1727
|
+
comments:
|
|
1728
|
+
- 'Defined in module: valuesets-physics-states-of-matter'
|
|
1729
|
+
simple_spatial_direction:
|
|
1730
|
+
description: Basic spatial directional terms for general use
|
|
1731
|
+
range: SimpleSpatialDirection
|
|
1732
|
+
comments:
|
|
1733
|
+
- 'Defined in module: spatial_qualifiers'
|
|
1734
|
+
anatomical_side:
|
|
1735
|
+
description: Anatomical sides as defined in the Biological Spatial Ontology (BSPO)
|
|
1736
|
+
range: AnatomicalSide
|
|
1737
|
+
comments:
|
|
1738
|
+
- 'Defined in module: spatial_qualifiers'
|
|
1739
|
+
anatomical_region:
|
|
1740
|
+
description: Anatomical regions based on spatial position
|
|
1741
|
+
range: AnatomicalRegion
|
|
1742
|
+
comments:
|
|
1743
|
+
- 'Defined in module: spatial_qualifiers'
|
|
1744
|
+
anatomical_axis:
|
|
1745
|
+
description: Anatomical axes defining spatial organization
|
|
1746
|
+
range: AnatomicalAxis
|
|
1747
|
+
comments:
|
|
1748
|
+
- 'Defined in module: spatial_qualifiers'
|
|
1749
|
+
anatomical_plane:
|
|
1750
|
+
description: Standard anatomical planes for sectioning
|
|
1751
|
+
range: AnatomicalPlane
|
|
1752
|
+
comments:
|
|
1753
|
+
- 'Defined in module: spatial_qualifiers'
|
|
1754
|
+
spatial_relationship:
|
|
1755
|
+
description: Spatial relationships between anatomical structures
|
|
1756
|
+
range: SpatialRelationship
|
|
1757
|
+
comments:
|
|
1758
|
+
- 'Defined in module: spatial_qualifiers'
|
|
1759
|
+
cell_polarity:
|
|
1760
|
+
description: Spatial polarity in cells and tissues
|
|
1761
|
+
range: CellPolarity
|
|
1762
|
+
comments:
|
|
1763
|
+
- 'Defined in module: spatial_qualifiers'
|
|
1764
|
+
data_absent:
|
|
1765
|
+
description: Used to specify why the normally expected content of the data element is missing
|
|
1766
|
+
range: DataAbsentEnum
|
|
1767
|
+
comments:
|
|
1768
|
+
- 'Defined in module: data_absent_reason'
|
|
1769
|
+
country_code_iso2:
|
|
1770
|
+
description: ISO 3166-1 alpha-2 country codes (2-letter codes)
|
|
1771
|
+
range: CountryCodeISO2Enum
|
|
1772
|
+
comments:
|
|
1773
|
+
- 'Defined in module: valuesets-geography-geographic-codes'
|
|
1774
|
+
country_code_iso3:
|
|
1775
|
+
description: ISO 3166-1 alpha-3 country codes (3-letter codes)
|
|
1776
|
+
range: CountryCodeISO3Enum
|
|
1777
|
+
comments:
|
|
1778
|
+
- 'Defined in module: valuesets-geography-geographic-codes'
|
|
1779
|
+
us_state_code:
|
|
1780
|
+
description: United States state and territory codes
|
|
1781
|
+
range: USStateCodeEnum
|
|
1782
|
+
comments:
|
|
1783
|
+
- 'Defined in module: valuesets-geography-geographic-codes'
|
|
1784
|
+
canadian_province_code:
|
|
1785
|
+
description: Canadian province and territory codes
|
|
1786
|
+
range: CanadianProvinceCodeEnum
|
|
1787
|
+
comments:
|
|
1788
|
+
- 'Defined in module: valuesets-geography-geographic-codes'
|
|
1789
|
+
compass_direction:
|
|
1790
|
+
description: Cardinal and intercardinal compass directions
|
|
1791
|
+
range: CompassDirection
|
|
1792
|
+
comments:
|
|
1793
|
+
- 'Defined in module: valuesets-geography-geographic-codes'
|
|
1794
|
+
relative_direction:
|
|
1795
|
+
description: Relative directional terms
|
|
1796
|
+
range: RelativeDirection
|
|
1797
|
+
comments:
|
|
1798
|
+
- 'Defined in module: valuesets-geography-geographic-codes'
|
|
1799
|
+
wind_direction:
|
|
1800
|
+
description: Wind direction nomenclature (named for where wind comes FROM)
|
|
1801
|
+
range: WindDirection
|
|
1802
|
+
comments:
|
|
1803
|
+
- 'Defined in module: valuesets-geography-geographic-codes'
|
|
1804
|
+
continent:
|
|
1805
|
+
description: Continental regions
|
|
1806
|
+
range: ContinentEnum
|
|
1807
|
+
comments:
|
|
1808
|
+
- 'Defined in module: valuesets-geography-geographic-codes'
|
|
1809
|
+
un_region:
|
|
1810
|
+
description: United Nations regional classifications
|
|
1811
|
+
range: UNRegionEnum
|
|
1812
|
+
comments:
|
|
1813
|
+
- 'Defined in module: valuesets-geography-geographic-codes'
|
|
1814
|
+
language_code_iso639_1:
|
|
1815
|
+
description: ISO 639-1 two-letter language codes
|
|
1816
|
+
range: LanguageCodeISO639_1Enum
|
|
1817
|
+
comments:
|
|
1818
|
+
- 'Defined in module: valuesets-geography-geographic-codes'
|
|
1819
|
+
time_zone:
|
|
1820
|
+
description: Common time zones
|
|
1821
|
+
range: TimeZoneEnum
|
|
1822
|
+
comments:
|
|
1823
|
+
- 'Defined in module: valuesets-geography-geographic-codes'
|
|
1824
|
+
currency_code_iso4217:
|
|
1825
|
+
description: ISO 4217 currency codes
|
|
1826
|
+
range: CurrencyCodeISO4217Enum
|
|
1827
|
+
comments:
|
|
1828
|
+
- 'Defined in module: valuesets-geography-geographic-codes'
|