valuesets 0.3.1__py3-none-any.whl

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  1. valuesets/__init__.py +7 -0
  2. valuesets/_version.py +8 -0
  3. valuesets/datamodel/valuesets.py +13796 -0
  4. valuesets/datamodel/valuesets_dataclass.py +24503 -0
  5. valuesets/datamodel/valuesets_pydantic.py +13796 -0
  6. valuesets/enums/__init__.py +590 -0
  7. valuesets/enums/academic/__init__.py +1 -0
  8. valuesets/enums/academic/research.py +559 -0
  9. valuesets/enums/analytical_chemistry/__init__.py +1 -0
  10. valuesets/enums/analytical_chemistry/mass_spectrometry.py +198 -0
  11. valuesets/enums/bio/__init__.py +1 -0
  12. valuesets/enums/bio/biological_colors.py +238 -0
  13. valuesets/enums/bio/cell_cycle.py +180 -0
  14. valuesets/enums/bio/currency_chemicals.py +52 -0
  15. valuesets/enums/bio/developmental_stages.py +103 -0
  16. valuesets/enums/bio/genome_features.py +182 -0
  17. valuesets/enums/bio/genomics.py +91 -0
  18. valuesets/enums/bio/go_aspect.py +32 -0
  19. valuesets/enums/bio/go_causality.py +58 -0
  20. valuesets/enums/bio/go_evidence.py +129 -0
  21. valuesets/enums/bio/human_developmental_stages.py +62 -0
  22. valuesets/enums/bio/insdc_geographic_locations.py +591 -0
  23. valuesets/enums/bio/insdc_missing_values.py +49 -0
  24. valuesets/enums/bio/lipid_categories.py +67 -0
  25. valuesets/enums/bio/mouse_developmental_stages.py +62 -0
  26. valuesets/enums/bio/plant_biology.py +86 -0
  27. valuesets/enums/bio/plant_developmental_stages.py +54 -0
  28. valuesets/enums/bio/plant_sex.py +81 -0
  29. valuesets/enums/bio/protein_evidence.py +61 -0
  30. valuesets/enums/bio/proteomics_standards.py +123 -0
  31. valuesets/enums/bio/psi_mi.py +306 -0
  32. valuesets/enums/bio/relationship_to_oxygen.py +37 -0
  33. valuesets/enums/bio/sequence_alphabets.py +449 -0
  34. valuesets/enums/bio/sequence_chemistry.py +357 -0
  35. valuesets/enums/bio/sequencing_platforms.py +302 -0
  36. valuesets/enums/bio/structural_biology.py +320 -0
  37. valuesets/enums/bio/taxonomy.py +238 -0
  38. valuesets/enums/bio/trophic_levels.py +85 -0
  39. valuesets/enums/bio/uniprot_species.py +344 -0
  40. valuesets/enums/bio/viral_genome_types.py +47 -0
  41. valuesets/enums/bioprocessing/__init__.py +1 -0
  42. valuesets/enums/bioprocessing/scale_up.py +249 -0
  43. valuesets/enums/business/__init__.py +1 -0
  44. valuesets/enums/business/human_resources.py +275 -0
  45. valuesets/enums/business/industry_classifications.py +181 -0
  46. valuesets/enums/business/management_operations.py +228 -0
  47. valuesets/enums/business/organizational_structures.py +236 -0
  48. valuesets/enums/business/quality_management.py +181 -0
  49. valuesets/enums/business/supply_chain.py +232 -0
  50. valuesets/enums/chemistry/__init__.py +1 -0
  51. valuesets/enums/chemistry/chemical_entities.py +315 -0
  52. valuesets/enums/chemistry/reaction_directionality.py +65 -0
  53. valuesets/enums/chemistry/reactions.py +256 -0
  54. valuesets/enums/clinical/__init__.py +1 -0
  55. valuesets/enums/clinical/nih_demographics.py +177 -0
  56. valuesets/enums/clinical/phenopackets.py +254 -0
  57. valuesets/enums/common_value_sets.py +8791 -0
  58. valuesets/enums/computing/__init__.py +1 -0
  59. valuesets/enums/computing/file_formats.py +294 -0
  60. valuesets/enums/computing/maturity_levels.py +196 -0
  61. valuesets/enums/computing/mime_types.py +227 -0
  62. valuesets/enums/confidence_levels.py +168 -0
  63. valuesets/enums/contributor.py +30 -0
  64. valuesets/enums/core.py +42 -0
  65. valuesets/enums/data/__init__.py +1 -0
  66. valuesets/enums/data/data_absent_reason.py +53 -0
  67. valuesets/enums/data_science/__init__.py +1 -0
  68. valuesets/enums/data_science/binary_classification.py +87 -0
  69. valuesets/enums/data_science/emotion_classification.py +66 -0
  70. valuesets/enums/data_science/priority_severity.py +73 -0
  71. valuesets/enums/data_science/quality_control.py +46 -0
  72. valuesets/enums/data_science/sentiment_analysis.py +50 -0
  73. valuesets/enums/data_science/text_classification.py +97 -0
  74. valuesets/enums/demographics.py +206 -0
  75. valuesets/enums/ecological_interactions.py +151 -0
  76. valuesets/enums/energy/__init__.py +1 -0
  77. valuesets/enums/energy/energy.py +343 -0
  78. valuesets/enums/energy/fossil_fuels.py +29 -0
  79. valuesets/enums/energy/nuclear/__init__.py +1 -0
  80. valuesets/enums/energy/nuclear/nuclear_facilities.py +195 -0
  81. valuesets/enums/energy/nuclear/nuclear_fuel_cycle.py +96 -0
  82. valuesets/enums/energy/nuclear/nuclear_fuels.py +175 -0
  83. valuesets/enums/energy/nuclear/nuclear_operations.py +191 -0
  84. valuesets/enums/energy/nuclear/nuclear_regulatory.py +188 -0
  85. valuesets/enums/energy/nuclear/nuclear_safety.py +164 -0
  86. valuesets/enums/energy/nuclear/nuclear_waste.py +158 -0
  87. valuesets/enums/energy/nuclear/reactor_types.py +163 -0
  88. valuesets/enums/environmental_health/__init__.py +1 -0
  89. valuesets/enums/environmental_health/exposures.py +265 -0
  90. valuesets/enums/geography/__init__.py +1 -0
  91. valuesets/enums/geography/geographic_codes.py +741 -0
  92. valuesets/enums/health/__init__.py +12 -0
  93. valuesets/enums/health/vaccination.py +98 -0
  94. valuesets/enums/health.py +36 -0
  95. valuesets/enums/health_base.py +36 -0
  96. valuesets/enums/healthcare.py +45 -0
  97. valuesets/enums/industry/__init__.py +1 -0
  98. valuesets/enums/industry/extractive_industry.py +94 -0
  99. valuesets/enums/industry/mining.py +388 -0
  100. valuesets/enums/industry/safety_colors.py +201 -0
  101. valuesets/enums/investigation.py +27 -0
  102. valuesets/enums/materials_science/__init__.py +1 -0
  103. valuesets/enums/materials_science/characterization_methods.py +112 -0
  104. valuesets/enums/materials_science/crystal_structures.py +76 -0
  105. valuesets/enums/materials_science/material_properties.py +119 -0
  106. valuesets/enums/materials_science/material_types.py +104 -0
  107. valuesets/enums/materials_science/pigments_dyes.py +198 -0
  108. valuesets/enums/materials_science/synthesis_methods.py +109 -0
  109. valuesets/enums/medical/__init__.py +1 -0
  110. valuesets/enums/medical/clinical.py +277 -0
  111. valuesets/enums/medical/neuroimaging.py +119 -0
  112. valuesets/enums/mining_processing.py +302 -0
  113. valuesets/enums/physics/__init__.py +1 -0
  114. valuesets/enums/physics/states_of_matter.py +46 -0
  115. valuesets/enums/social/__init__.py +1 -0
  116. valuesets/enums/social/person_status.py +29 -0
  117. valuesets/enums/spatial/__init__.py +1 -0
  118. valuesets/enums/spatial/spatial_qualifiers.py +246 -0
  119. valuesets/enums/statistics/__init__.py +5 -0
  120. valuesets/enums/statistics/prediction_outcomes.py +31 -0
  121. valuesets/enums/statistics.py +31 -0
  122. valuesets/enums/time/__init__.py +1 -0
  123. valuesets/enums/time/temporal.py +254 -0
  124. valuesets/enums/units/__init__.py +1 -0
  125. valuesets/enums/units/measurements.py +310 -0
  126. valuesets/enums/visual/__init__.py +1 -0
  127. valuesets/enums/visual/colors.py +376 -0
  128. valuesets/generators/__init__.py +19 -0
  129. valuesets/generators/auto_slot_injector.py +280 -0
  130. valuesets/generators/enhanced_pydantic_generator.py +100 -0
  131. valuesets/generators/enum_slot_generator.py +201 -0
  132. valuesets/generators/modular_rich_generator.py +353 -0
  133. valuesets/generators/prefix_standardizer.py +198 -0
  134. valuesets/generators/rich_enum.py +127 -0
  135. valuesets/generators/rich_pydantic_generator.py +310 -0
  136. valuesets/generators/smart_slot_syncer.py +428 -0
  137. valuesets/generators/sssom_generator.py +394 -0
  138. valuesets/merged/merged_hierarchy.yaml +21649 -0
  139. valuesets/schema/README.md +3 -0
  140. valuesets/schema/academic/research.yaml +911 -0
  141. valuesets/schema/analytical_chemistry/mass_spectrometry.yaml +206 -0
  142. valuesets/schema/bio/bio_entities.yaml +364 -0
  143. valuesets/schema/bio/biological_colors.yaml +434 -0
  144. valuesets/schema/bio/cell_cycle.yaml +309 -0
  145. valuesets/schema/bio/currency_chemicals.yaml +70 -0
  146. valuesets/schema/bio/developmental_stages.yaml +226 -0
  147. valuesets/schema/bio/genome_features.yaml +342 -0
  148. valuesets/schema/bio/genomics.yaml +101 -0
  149. valuesets/schema/bio/go_aspect.yaml +39 -0
  150. valuesets/schema/bio/go_causality.yaml +119 -0
  151. valuesets/schema/bio/go_evidence.yaml +215 -0
  152. valuesets/schema/bio/insdc_geographic_locations.yaml +911 -0
  153. valuesets/schema/bio/insdc_missing_values.yaml +85 -0
  154. valuesets/schema/bio/lipid_categories.yaml +72 -0
  155. valuesets/schema/bio/plant_biology.yaml +125 -0
  156. valuesets/schema/bio/plant_developmental_stages.yaml +77 -0
  157. valuesets/schema/bio/plant_sex.yaml +108 -0
  158. valuesets/schema/bio/protein_evidence.yaml +63 -0
  159. valuesets/schema/bio/proteomics_standards.yaml +116 -0
  160. valuesets/schema/bio/psi_mi.yaml +400 -0
  161. valuesets/schema/bio/relationship_to_oxygen.yaml +46 -0
  162. valuesets/schema/bio/sequence_alphabets.yaml +1168 -0
  163. valuesets/schema/bio/sequence_chemistry.yaml +477 -0
  164. valuesets/schema/bio/sequencing_platforms.yaml +515 -0
  165. valuesets/schema/bio/structural_biology.yaml +428 -0
  166. valuesets/schema/bio/taxonomy.yaml +453 -0
  167. valuesets/schema/bio/trophic_levels.yaml +118 -0
  168. valuesets/schema/bio/uniprot_species.yaml +1209 -0
  169. valuesets/schema/bio/viral_genome_types.yaml +99 -0
  170. valuesets/schema/bioprocessing/scale_up.yaml +458 -0
  171. valuesets/schema/business/human_resources.yaml +752 -0
  172. valuesets/schema/business/industry_classifications.yaml +448 -0
  173. valuesets/schema/business/management_operations.yaml +602 -0
  174. valuesets/schema/business/organizational_structures.yaml +645 -0
  175. valuesets/schema/business/quality_management.yaml +502 -0
  176. valuesets/schema/business/supply_chain.yaml +688 -0
  177. valuesets/schema/chemistry/chemical_entities.yaml +639 -0
  178. valuesets/schema/chemistry/reaction_directionality.yaml +60 -0
  179. valuesets/schema/chemistry/reactions.yaml +442 -0
  180. valuesets/schema/clinical/nih_demographics.yaml +285 -0
  181. valuesets/schema/clinical/phenopackets.yaml +429 -0
  182. valuesets/schema/computing/file_formats.yaml +631 -0
  183. valuesets/schema/computing/maturity_levels.yaml +229 -0
  184. valuesets/schema/computing/mime_types.yaml +266 -0
  185. valuesets/schema/confidence_levels.yaml +206 -0
  186. valuesets/schema/contributor.yaml +30 -0
  187. valuesets/schema/core.yaml +55 -0
  188. valuesets/schema/data/data_absent_reason.yaml +82 -0
  189. valuesets/schema/data_science/binary_classification.yaml +125 -0
  190. valuesets/schema/data_science/emotion_classification.yaml +109 -0
  191. valuesets/schema/data_science/priority_severity.yaml +122 -0
  192. valuesets/schema/data_science/quality_control.yaml +68 -0
  193. valuesets/schema/data_science/sentiment_analysis.yaml +81 -0
  194. valuesets/schema/data_science/text_classification.yaml +135 -0
  195. valuesets/schema/demographics.yaml +238 -0
  196. valuesets/schema/ecological_interactions.yaml +298 -0
  197. valuesets/schema/energy/energy.yaml +595 -0
  198. valuesets/schema/energy/fossil_fuels.yaml +28 -0
  199. valuesets/schema/energy/nuclear/nuclear_facilities.yaml +463 -0
  200. valuesets/schema/energy/nuclear/nuclear_fuel_cycle.yaml +82 -0
  201. valuesets/schema/energy/nuclear/nuclear_fuels.yaml +421 -0
  202. valuesets/schema/energy/nuclear/nuclear_operations.yaml +480 -0
  203. valuesets/schema/energy/nuclear/nuclear_regulatory.yaml +200 -0
  204. valuesets/schema/energy/nuclear/nuclear_safety.yaml +352 -0
  205. valuesets/schema/energy/nuclear/nuclear_waste.yaml +332 -0
  206. valuesets/schema/energy/nuclear/reactor_types.yaml +394 -0
  207. valuesets/schema/environmental_health/exposures.yaml +355 -0
  208. valuesets/schema/generated_slots.yaml +1828 -0
  209. valuesets/schema/geography/geographic_codes.yaml +1018 -0
  210. valuesets/schema/health/vaccination.yaml +102 -0
  211. valuesets/schema/health.yaml +38 -0
  212. valuesets/schema/healthcare.yaml +53 -0
  213. valuesets/schema/industry/extractive_industry.yaml +89 -0
  214. valuesets/schema/industry/mining.yaml +888 -0
  215. valuesets/schema/industry/safety_colors.yaml +375 -0
  216. valuesets/schema/investigation.yaml +64 -0
  217. valuesets/schema/materials_science/characterization_methods.yaml +193 -0
  218. valuesets/schema/materials_science/crystal_structures.yaml +138 -0
  219. valuesets/schema/materials_science/material_properties.yaml +135 -0
  220. valuesets/schema/materials_science/material_types.yaml +151 -0
  221. valuesets/schema/materials_science/pigments_dyes.yaml +465 -0
  222. valuesets/schema/materials_science/synthesis_methods.yaml +186 -0
  223. valuesets/schema/medical/clinical.yaml +610 -0
  224. valuesets/schema/medical/neuroimaging.yaml +325 -0
  225. valuesets/schema/mining_processing.yaml +295 -0
  226. valuesets/schema/physics/states_of_matter.yaml +46 -0
  227. valuesets/schema/slot_mixins.yaml +143 -0
  228. valuesets/schema/social/person_status.yaml +28 -0
  229. valuesets/schema/spatial/spatial_qualifiers.yaml +466 -0
  230. valuesets/schema/statistics/prediction_outcomes.yaml +26 -0
  231. valuesets/schema/statistics.yaml +34 -0
  232. valuesets/schema/time/temporal.yaml +435 -0
  233. valuesets/schema/types.yaml +15 -0
  234. valuesets/schema/units/measurements.yaml +675 -0
  235. valuesets/schema/valuesets.yaml +100 -0
  236. valuesets/schema/visual/colors.yaml +778 -0
  237. valuesets/utils/__init__.py +6 -0
  238. valuesets/utils/comparison.py +102 -0
  239. valuesets/utils/expand_dynamic_enums.py +414 -0
  240. valuesets/utils/mapping_utils.py +236 -0
  241. valuesets/validators/__init__.py +11 -0
  242. valuesets/validators/enum_evaluator.py +669 -0
  243. valuesets/validators/oak_config.yaml +70 -0
  244. valuesets/validators/validate_with_ols.py +241 -0
  245. valuesets-0.3.1.dist-info/METADATA +395 -0
  246. valuesets-0.3.1.dist-info/RECORD +248 -0
  247. valuesets-0.3.1.dist-info/WHEEL +4 -0
  248. valuesets-0.3.1.dist-info/licenses/LICENSE +201 -0
valuesets/schema/environmental_health/exposures.yaml ADDED
@@ -0,0 +1,355 @@
1
+ name: valuesets-environmental-health-exposures
2
+ title: valuesets-environmental-health-exposures
3
+ description: Environmental health and exposure-related value sets
4
+ id: https://w3id.org/valuesets/environmental-health/exposures
5
+ prefixes:
6
+ # linkml_common: https://w3id.org/valuesets/
7
+ linkml: https://w3id.org/linkml/
8
+ ENVO: http://purl.obolibrary.org/obo/ENVO_
9
+ NCIT: http://purl.obolibrary.org/obo/NCIT_
10
+ CHEBI: http://purl.obolibrary.org/obo/CHEBI_
11
+ valuesets: https://w3id.org/valuesets/
12
+ default_prefix: valuesets
13
+ slots:
14
+ air_pollutant:
15
+ description: Common air pollutants and air quality indicators
16
+ range: AirPollutantEnum
17
+ pesticide_type:
18
+ description: Categories of pesticides by target organism or chemical class
19
+ range: PesticideTypeEnum
20
+ heavy_metal:
21
+ description: Heavy metals of environmental health concern
22
+ range: HeavyMetalEnum
23
+ exposure_route:
24
+ description: Routes by which exposure to environmental agents occurs
25
+ range: ExposureRouteEnum
26
+ exposure_source:
27
+ description: Common sources of environmental exposures
28
+ range: ExposureSourceEnum
29
+ water_contaminant:
30
+ description: Common water contaminants
31
+ range: WaterContaminantEnum
32
+ endocrine_disruptor:
33
+ description: Common endocrine disrupting chemicals
34
+ range: EndocrineDisruptorEnum
35
+ exposure_duration:
36
+ description: Duration categories for environmental exposures
37
+ range: ExposureDurationEnum
38
+ enums:
39
+ AirPollutantEnum:
40
+ description: Common air pollutants and air quality indicators
41
+ permissible_values:
42
+ PM2_5:
43
+ description: Fine particulate matter with diameter less than 2.5 micrometers
44
+ meaning: ENVO:01000415
45
+ title: fine respirable suspended particulate matter
46
+ PM10:
47
+ description: Respirable particulate matter with diameter less than 10 micrometers
48
+ meaning: ENVO:01000405
49
+ title: respirable suspended particulate matter
50
+ ULTRAFINE_PARTICLES:
51
+ description: Ultrafine particles with diameter less than 100 nanometers
52
+ meaning: ENVO:01000416
53
+ title: ultrafine respirable suspended particulate matter
54
+ OZONE:
55
+ description: Ground-level ozone (O3)
56
+ meaning: CHEBI:25812
57
+ NITROGEN_DIOXIDE:
58
+ description: Nitrogen dioxide (NO2)
59
+ meaning: CHEBI:33101
60
+ SULFUR_DIOXIDE:
61
+ description: Sulfur dioxide (SO2)
62
+ meaning: CHEBI:18422
63
+ CARBON_MONOXIDE:
64
+ description: Carbon monoxide (CO)
65
+ meaning: CHEBI:17245
66
+ LEAD:
67
+ description: Airborne lead particles
68
+ meaning: NCIT:C44396
69
+ title: Lead Metal
70
+ BENZENE:
71
+ description: Benzene vapor
72
+ meaning: CHEBI:16716
73
+ FORMALDEHYDE:
74
+ description: Formaldehyde gas
75
+ meaning: CHEBI:16842
76
+ VOLATILE_ORGANIC_COMPOUNDS:
77
+ description: Volatile organic compounds (VOCs)
78
+ meaning: CHEBI:134179
79
+ title: volatile organic compound
80
+ POLYCYCLIC_AROMATIC_HYDROCARBONS:
81
+ description: Polycyclic aromatic hydrocarbons (PAHs)
82
+ meaning: CHEBI:33848
83
+ title: polycyclic arene
84
+ PesticideTypeEnum:
85
+ description: Categories of pesticides by target organism or chemical class
86
+ permissible_values:
87
+ HERBICIDE:
88
+ description: Chemical used to kill unwanted plants
89
+ meaning: CHEBI:24527
90
+ INSECTICIDE:
91
+ description: Chemical used to kill insects
92
+ meaning: CHEBI:24852
93
+ FUNGICIDE:
94
+ description: Chemical used to kill fungi
95
+ meaning: CHEBI:24127
96
+ RODENTICIDE:
97
+ description: Chemical used to kill rodents
98
+ meaning: CHEBI:33288
99
+ ORGANOPHOSPHATE:
100
+ description: Organophosphate pesticide
101
+ meaning: CHEBI:25708
102
+ title: organophosphate insecticide
103
+ ORGANOCHLORINE:
104
+ description: Organochlorine pesticide
105
+ meaning: CHEBI:25705
106
+ title: organochlorine insecticide
107
+ PYRETHROID:
108
+ description: Pyrethroid pesticide
109
+ meaning: CHEBI:26413
110
+ title: pyrethroid insecticide
111
+ CARBAMATE:
112
+ description: Carbamate pesticide
113
+ meaning: CHEBI:38461
114
+ title: carbamate insecticide
115
+ NEONICOTINOID:
116
+ description: Neonicotinoid pesticide
117
+ meaning: CHEBI:25540
118
+ title: neonicotinoid insectide
119
+ GLYPHOSATE:
120
+ description: Glyphosate herbicide
121
+ meaning: CHEBI:27744
122
+ HeavyMetalEnum:
123
+ description: Heavy metals of environmental health concern
124
+ permissible_values:
125
+ LEAD:
126
+ description: Lead (Pb)
127
+ meaning: NCIT:C44396
128
+ title: Lead Metal
129
+ MERCURY:
130
+ description: Mercury (Hg)
131
+ meaning: NCIT:C66842
132
+ CADMIUM:
133
+ description: Cadmium (Cd)
134
+ meaning: NCIT:C44348
135
+ ARSENIC:
136
+ description: Arsenic (As)
137
+ meaning: NCIT:C28131
138
+ CHROMIUM:
139
+ description: Chromium (Cr)
140
+ meaning: NCIT:C370
141
+ NICKEL:
142
+ description: Nickel (Ni)
143
+ meaning: CHEBI:28112
144
+ title: nickel atom
145
+ COPPER:
146
+ description: Copper (Cu)
147
+ meaning: CHEBI:28694
148
+ title: copper atom
149
+ ZINC:
150
+ description: Zinc (Zn)
151
+ meaning: CHEBI:27363
152
+ title: zinc atom
153
+ MANGANESE:
154
+ description: Manganese (Mn)
155
+ meaning: CHEBI:18291
156
+ title: manganese atom
157
+ COBALT:
158
+ description: Cobalt (Co)
159
+ meaning: CHEBI:27638
160
+ title: cobalt atom
161
+ ExposureRouteEnum:
162
+ description: Routes by which exposure to environmental agents occurs
163
+ permissible_values:
164
+ INHALATION:
165
+ description: Exposure through breathing
166
+ meaning: NCIT:C38284
167
+ title: Nasal Route of Administration
168
+ INGESTION:
169
+ description: Exposure through eating or drinking
170
+ meaning: NCIT:C38288
171
+ title: Oral Route of Administration
172
+ DERMAL:
173
+ description: Exposure through skin contact
174
+ meaning: NCIT:C38675
175
+ title: Cutaneous Route of Administration
176
+ INJECTION:
177
+ description: Exposure through injection
178
+ meaning: NCIT:C38276
179
+ title: Intravenous Route of Administration
180
+ TRANSPLACENTAL:
181
+ description: Exposure through placental transfer
182
+ meaning: NCIT:C38307
183
+ title: Transplacental Route of Administration
184
+ OCULAR:
185
+ description: Exposure through the eyes
186
+ meaning: NCIT:C38287
187
+ title: Ophthalmic Route of Administration
188
+ MULTIPLE_ROUTES:
189
+ description: Exposure through multiple pathways
190
+ ExposureSourceEnum:
191
+ description: Common sources of environmental exposures
192
+ permissible_values:
193
+ AMBIENT_AIR:
194
+ description: Outdoor air pollution
195
+ related_mappings:
196
+ - ENVO:01000676
197
+ INDOOR_AIR:
198
+ description: Indoor air pollution
199
+ related_mappings:
200
+ - ENVO:01000676
201
+ DRINKING_WATER:
202
+ description: Contaminated drinking water
203
+ related_mappings:
204
+ - ENVO:00003064
205
+ - ENVO:00002186
206
+ SOIL:
207
+ description: Contaminated soil
208
+ meaning: ENVO:00002116
209
+ title: contaminated soil
210
+ FOOD:
211
+ description: Contaminated food
212
+ related_mappings:
213
+ - CHEBI:33290
214
+ OCCUPATIONAL:
215
+ description: Workplace exposure
216
+ meaning: ENVO:03501332
217
+ title: occupational environment
218
+ CONSUMER_PRODUCTS:
219
+ description: Household and consumer products
220
+ related_mappings:
221
+ - ENVO:00003074
222
+ - ENVO:03501339
223
+ INDUSTRIAL_EMISSIONS:
224
+ description: Industrial facility emissions
225
+ related_mappings:
226
+ - ENVO:03000092
227
+ - ENVO:00003861
228
+ AGRICULTURAL:
229
+ description: Agricultural activities
230
+ related_mappings:
231
+ - ENVO:00000077
232
+ - ENVO:01000311
233
+ TRAFFIC:
234
+ description: Traffic-related pollution
235
+ related_mappings:
236
+ - ENVO:00000064
237
+ - ENVO:01000601
238
+ TOBACCO_SMOKE:
239
+ description: Active or passive tobacco smoke exposure
240
+ meaning: NCIT:C17140
241
+ title: Passive Smoke Exposure
242
+ CONSTRUCTION:
243
+ description: Construction-related exposure
244
+ related_mappings:
245
+ - ENVO:01000996
246
+ MINING:
247
+ description: Mining-related exposure
248
+ related_mappings:
249
+ - ENVO:01001437
250
+ WaterContaminantEnum:
251
+ description: Common water contaminants
252
+ permissible_values:
253
+ LEAD:
254
+ description: Lead contamination
255
+ meaning: NCIT:C44396
256
+ title: Lead Metal
257
+ ARSENIC:
258
+ description: Arsenic contamination
259
+ meaning: NCIT:C28131
260
+ NITRATES:
261
+ description: Nitrate contamination
262
+ meaning: CHEBI:17632
263
+ title: nitrate
264
+ FLUORIDE:
265
+ description: Fluoride levels
266
+ meaning: CHEBI:17051
267
+ CHLORINE:
268
+ description: Chlorine and chlorination byproducts
269
+ meaning: NCIT:C28140
270
+ BACTERIA:
271
+ description: Bacterial contamination
272
+ meaning: NCIT:C14187
273
+ VIRUSES:
274
+ description: Viral contamination
275
+ meaning: NCIT:C14283
276
+ title: Virus
277
+ PARASITES:
278
+ description: Parasitic contamination
279
+ meaning: NCIT:C28176
280
+ title: Parasite
281
+ PFAS:
282
+ description: Per- and polyfluoroalkyl substances
283
+ meaning: CHEBI:172397
284
+ title: perfluoroalkyl substance
285
+ MICROPLASTICS:
286
+ description: Microplastic particles
287
+ meaning: ENVO:01000944
288
+ title: microplastic particle
289
+ PHARMACEUTICALS:
290
+ description: Pharmaceutical residues
291
+ meaning: CHEBI:52217
292
+ title: pharmaceutical
293
+ PESTICIDES:
294
+ description: Pesticide residues
295
+ meaning: CHEBI:25944
296
+ title: pesticide
297
+ EndocrineDisruptorEnum:
298
+ description: Common endocrine disrupting chemicals
299
+ permissible_values:
300
+ BPA:
301
+ description: Bisphenol A
302
+ meaning: CHEBI:33216
303
+ title: bisphenol A
304
+ PHTHALATES:
305
+ description: Phthalates
306
+ meaning: CHEBI:26092
307
+ title: phthalate
308
+ PFAS:
309
+ description: Per- and polyfluoroalkyl substances
310
+ meaning: CHEBI:172397
311
+ title: perfluoroalkyl substance
312
+ PCB:
313
+ description: Polychlorinated biphenyls
314
+ meaning: CHEBI:53156
315
+ title: polychlorobiphenyl
316
+ DIOXINS:
317
+ description: Dioxins
318
+ meaning: NCIT:C442
319
+ title: Dioxin Compound
320
+ DDT:
321
+ description: Dichlorodiphenyltrichloroethane and metabolites
322
+ meaning: CHEBI:16130
323
+ PARABENS:
324
+ description: Parabens
325
+ meaning: CHEBI:85122
326
+ title: paraben
327
+ TRICLOSAN:
328
+ description: Triclosan
329
+ meaning: CHEBI:164200
330
+ FLAME_RETARDANTS:
331
+ description: Brominated flame retardants
332
+ meaning: CHEBI:172368
333
+ title: brominated flame retardant
334
+ ExposureDurationEnum:
335
+ description: Duration categories for environmental exposures
336
+ permissible_values:
337
+ ACUTE:
338
+ description: Single or short-term exposure (hours to days)
339
+ SUBACUTE:
340
+ description: Repeated exposure over weeks
341
+ SUBCHRONIC:
342
+ description: Repeated exposure over months
343
+ CHRONIC:
344
+ description: Long-term exposure over years
345
+ LIFETIME:
346
+ description: Exposure over entire lifetime
347
+ PRENATAL:
348
+ description: Exposure during pregnancy
349
+ POSTNATAL:
350
+ description: Exposure after birth
351
+ DEVELOPMENTAL:
352
+ description: Exposure during critical developmental periods
353
+ license: MIT
354
+ see_also:
355
+ - https://linkml.github.io/valuesets