valuesets 0.3.1__py3-none-any.whl

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  1. valuesets/__init__.py +7 -0
  2. valuesets/_version.py +8 -0
  3. valuesets/datamodel/valuesets.py +13796 -0
  4. valuesets/datamodel/valuesets_dataclass.py +24503 -0
  5. valuesets/datamodel/valuesets_pydantic.py +13796 -0
  6. valuesets/enums/__init__.py +590 -0
  7. valuesets/enums/academic/__init__.py +1 -0
  8. valuesets/enums/academic/research.py +559 -0
  9. valuesets/enums/analytical_chemistry/__init__.py +1 -0
  10. valuesets/enums/analytical_chemistry/mass_spectrometry.py +198 -0
  11. valuesets/enums/bio/__init__.py +1 -0
  12. valuesets/enums/bio/biological_colors.py +238 -0
  13. valuesets/enums/bio/cell_cycle.py +180 -0
  14. valuesets/enums/bio/currency_chemicals.py +52 -0
  15. valuesets/enums/bio/developmental_stages.py +103 -0
  16. valuesets/enums/bio/genome_features.py +182 -0
  17. valuesets/enums/bio/genomics.py +91 -0
  18. valuesets/enums/bio/go_aspect.py +32 -0
  19. valuesets/enums/bio/go_causality.py +58 -0
  20. valuesets/enums/bio/go_evidence.py +129 -0
  21. valuesets/enums/bio/human_developmental_stages.py +62 -0
  22. valuesets/enums/bio/insdc_geographic_locations.py +591 -0
  23. valuesets/enums/bio/insdc_missing_values.py +49 -0
  24. valuesets/enums/bio/lipid_categories.py +67 -0
  25. valuesets/enums/bio/mouse_developmental_stages.py +62 -0
  26. valuesets/enums/bio/plant_biology.py +86 -0
  27. valuesets/enums/bio/plant_developmental_stages.py +54 -0
  28. valuesets/enums/bio/plant_sex.py +81 -0
  29. valuesets/enums/bio/protein_evidence.py +61 -0
  30. valuesets/enums/bio/proteomics_standards.py +123 -0
  31. valuesets/enums/bio/psi_mi.py +306 -0
  32. valuesets/enums/bio/relationship_to_oxygen.py +37 -0
  33. valuesets/enums/bio/sequence_alphabets.py +449 -0
  34. valuesets/enums/bio/sequence_chemistry.py +357 -0
  35. valuesets/enums/bio/sequencing_platforms.py +302 -0
  36. valuesets/enums/bio/structural_biology.py +320 -0
  37. valuesets/enums/bio/taxonomy.py +238 -0
  38. valuesets/enums/bio/trophic_levels.py +85 -0
  39. valuesets/enums/bio/uniprot_species.py +344 -0
  40. valuesets/enums/bio/viral_genome_types.py +47 -0
  41. valuesets/enums/bioprocessing/__init__.py +1 -0
  42. valuesets/enums/bioprocessing/scale_up.py +249 -0
  43. valuesets/enums/business/__init__.py +1 -0
  44. valuesets/enums/business/human_resources.py +275 -0
  45. valuesets/enums/business/industry_classifications.py +181 -0
  46. valuesets/enums/business/management_operations.py +228 -0
  47. valuesets/enums/business/organizational_structures.py +236 -0
  48. valuesets/enums/business/quality_management.py +181 -0
  49. valuesets/enums/business/supply_chain.py +232 -0
  50. valuesets/enums/chemistry/__init__.py +1 -0
  51. valuesets/enums/chemistry/chemical_entities.py +315 -0
  52. valuesets/enums/chemistry/reaction_directionality.py +65 -0
  53. valuesets/enums/chemistry/reactions.py +256 -0
  54. valuesets/enums/clinical/__init__.py +1 -0
  55. valuesets/enums/clinical/nih_demographics.py +177 -0
  56. valuesets/enums/clinical/phenopackets.py +254 -0
  57. valuesets/enums/common_value_sets.py +8791 -0
  58. valuesets/enums/computing/__init__.py +1 -0
  59. valuesets/enums/computing/file_formats.py +294 -0
  60. valuesets/enums/computing/maturity_levels.py +196 -0
  61. valuesets/enums/computing/mime_types.py +227 -0
  62. valuesets/enums/confidence_levels.py +168 -0
  63. valuesets/enums/contributor.py +30 -0
  64. valuesets/enums/core.py +42 -0
  65. valuesets/enums/data/__init__.py +1 -0
  66. valuesets/enums/data/data_absent_reason.py +53 -0
  67. valuesets/enums/data_science/__init__.py +1 -0
  68. valuesets/enums/data_science/binary_classification.py +87 -0
  69. valuesets/enums/data_science/emotion_classification.py +66 -0
  70. valuesets/enums/data_science/priority_severity.py +73 -0
  71. valuesets/enums/data_science/quality_control.py +46 -0
  72. valuesets/enums/data_science/sentiment_analysis.py +50 -0
  73. valuesets/enums/data_science/text_classification.py +97 -0
  74. valuesets/enums/demographics.py +206 -0
  75. valuesets/enums/ecological_interactions.py +151 -0
  76. valuesets/enums/energy/__init__.py +1 -0
  77. valuesets/enums/energy/energy.py +343 -0
  78. valuesets/enums/energy/fossil_fuels.py +29 -0
  79. valuesets/enums/energy/nuclear/__init__.py +1 -0
  80. valuesets/enums/energy/nuclear/nuclear_facilities.py +195 -0
  81. valuesets/enums/energy/nuclear/nuclear_fuel_cycle.py +96 -0
  82. valuesets/enums/energy/nuclear/nuclear_fuels.py +175 -0
  83. valuesets/enums/energy/nuclear/nuclear_operations.py +191 -0
  84. valuesets/enums/energy/nuclear/nuclear_regulatory.py +188 -0
  85. valuesets/enums/energy/nuclear/nuclear_safety.py +164 -0
  86. valuesets/enums/energy/nuclear/nuclear_waste.py +158 -0
  87. valuesets/enums/energy/nuclear/reactor_types.py +163 -0
  88. valuesets/enums/environmental_health/__init__.py +1 -0
  89. valuesets/enums/environmental_health/exposures.py +265 -0
  90. valuesets/enums/geography/__init__.py +1 -0
  91. valuesets/enums/geography/geographic_codes.py +741 -0
  92. valuesets/enums/health/__init__.py +12 -0
  93. valuesets/enums/health/vaccination.py +98 -0
  94. valuesets/enums/health.py +36 -0
  95. valuesets/enums/health_base.py +36 -0
  96. valuesets/enums/healthcare.py +45 -0
  97. valuesets/enums/industry/__init__.py +1 -0
  98. valuesets/enums/industry/extractive_industry.py +94 -0
  99. valuesets/enums/industry/mining.py +388 -0
  100. valuesets/enums/industry/safety_colors.py +201 -0
  101. valuesets/enums/investigation.py +27 -0
  102. valuesets/enums/materials_science/__init__.py +1 -0
  103. valuesets/enums/materials_science/characterization_methods.py +112 -0
  104. valuesets/enums/materials_science/crystal_structures.py +76 -0
  105. valuesets/enums/materials_science/material_properties.py +119 -0
  106. valuesets/enums/materials_science/material_types.py +104 -0
  107. valuesets/enums/materials_science/pigments_dyes.py +198 -0
  108. valuesets/enums/materials_science/synthesis_methods.py +109 -0
  109. valuesets/enums/medical/__init__.py +1 -0
  110. valuesets/enums/medical/clinical.py +277 -0
  111. valuesets/enums/medical/neuroimaging.py +119 -0
  112. valuesets/enums/mining_processing.py +302 -0
  113. valuesets/enums/physics/__init__.py +1 -0
  114. valuesets/enums/physics/states_of_matter.py +46 -0
  115. valuesets/enums/social/__init__.py +1 -0
  116. valuesets/enums/social/person_status.py +29 -0
  117. valuesets/enums/spatial/__init__.py +1 -0
  118. valuesets/enums/spatial/spatial_qualifiers.py +246 -0
  119. valuesets/enums/statistics/__init__.py +5 -0
  120. valuesets/enums/statistics/prediction_outcomes.py +31 -0
  121. valuesets/enums/statistics.py +31 -0
  122. valuesets/enums/time/__init__.py +1 -0
  123. valuesets/enums/time/temporal.py +254 -0
  124. valuesets/enums/units/__init__.py +1 -0
  125. valuesets/enums/units/measurements.py +310 -0
  126. valuesets/enums/visual/__init__.py +1 -0
  127. valuesets/enums/visual/colors.py +376 -0
  128. valuesets/generators/__init__.py +19 -0
  129. valuesets/generators/auto_slot_injector.py +280 -0
  130. valuesets/generators/enhanced_pydantic_generator.py +100 -0
  131. valuesets/generators/enum_slot_generator.py +201 -0
  132. valuesets/generators/modular_rich_generator.py +353 -0
  133. valuesets/generators/prefix_standardizer.py +198 -0
  134. valuesets/generators/rich_enum.py +127 -0
  135. valuesets/generators/rich_pydantic_generator.py +310 -0
  136. valuesets/generators/smart_slot_syncer.py +428 -0
  137. valuesets/generators/sssom_generator.py +394 -0
  138. valuesets/merged/merged_hierarchy.yaml +21649 -0
  139. valuesets/schema/README.md +3 -0
  140. valuesets/schema/academic/research.yaml +911 -0
  141. valuesets/schema/analytical_chemistry/mass_spectrometry.yaml +206 -0
  142. valuesets/schema/bio/bio_entities.yaml +364 -0
  143. valuesets/schema/bio/biological_colors.yaml +434 -0
  144. valuesets/schema/bio/cell_cycle.yaml +309 -0
  145. valuesets/schema/bio/currency_chemicals.yaml +70 -0
  146. valuesets/schema/bio/developmental_stages.yaml +226 -0
  147. valuesets/schema/bio/genome_features.yaml +342 -0
  148. valuesets/schema/bio/genomics.yaml +101 -0
  149. valuesets/schema/bio/go_aspect.yaml +39 -0
  150. valuesets/schema/bio/go_causality.yaml +119 -0
  151. valuesets/schema/bio/go_evidence.yaml +215 -0
  152. valuesets/schema/bio/insdc_geographic_locations.yaml +911 -0
  153. valuesets/schema/bio/insdc_missing_values.yaml +85 -0
  154. valuesets/schema/bio/lipid_categories.yaml +72 -0
  155. valuesets/schema/bio/plant_biology.yaml +125 -0
  156. valuesets/schema/bio/plant_developmental_stages.yaml +77 -0
  157. valuesets/schema/bio/plant_sex.yaml +108 -0
  158. valuesets/schema/bio/protein_evidence.yaml +63 -0
  159. valuesets/schema/bio/proteomics_standards.yaml +116 -0
  160. valuesets/schema/bio/psi_mi.yaml +400 -0
  161. valuesets/schema/bio/relationship_to_oxygen.yaml +46 -0
  162. valuesets/schema/bio/sequence_alphabets.yaml +1168 -0
  163. valuesets/schema/bio/sequence_chemistry.yaml +477 -0
  164. valuesets/schema/bio/sequencing_platforms.yaml +515 -0
  165. valuesets/schema/bio/structural_biology.yaml +428 -0
  166. valuesets/schema/bio/taxonomy.yaml +453 -0
  167. valuesets/schema/bio/trophic_levels.yaml +118 -0
  168. valuesets/schema/bio/uniprot_species.yaml +1209 -0
  169. valuesets/schema/bio/viral_genome_types.yaml +99 -0
  170. valuesets/schema/bioprocessing/scale_up.yaml +458 -0
  171. valuesets/schema/business/human_resources.yaml +752 -0
  172. valuesets/schema/business/industry_classifications.yaml +448 -0
  173. valuesets/schema/business/management_operations.yaml +602 -0
  174. valuesets/schema/business/organizational_structures.yaml +645 -0
  175. valuesets/schema/business/quality_management.yaml +502 -0
  176. valuesets/schema/business/supply_chain.yaml +688 -0
  177. valuesets/schema/chemistry/chemical_entities.yaml +639 -0
  178. valuesets/schema/chemistry/reaction_directionality.yaml +60 -0
  179. valuesets/schema/chemistry/reactions.yaml +442 -0
  180. valuesets/schema/clinical/nih_demographics.yaml +285 -0
  181. valuesets/schema/clinical/phenopackets.yaml +429 -0
  182. valuesets/schema/computing/file_formats.yaml +631 -0
  183. valuesets/schema/computing/maturity_levels.yaml +229 -0
  184. valuesets/schema/computing/mime_types.yaml +266 -0
  185. valuesets/schema/confidence_levels.yaml +206 -0
  186. valuesets/schema/contributor.yaml +30 -0
  187. valuesets/schema/core.yaml +55 -0
  188. valuesets/schema/data/data_absent_reason.yaml +82 -0
  189. valuesets/schema/data_science/binary_classification.yaml +125 -0
  190. valuesets/schema/data_science/emotion_classification.yaml +109 -0
  191. valuesets/schema/data_science/priority_severity.yaml +122 -0
  192. valuesets/schema/data_science/quality_control.yaml +68 -0
  193. valuesets/schema/data_science/sentiment_analysis.yaml +81 -0
  194. valuesets/schema/data_science/text_classification.yaml +135 -0
  195. valuesets/schema/demographics.yaml +238 -0
  196. valuesets/schema/ecological_interactions.yaml +298 -0
  197. valuesets/schema/energy/energy.yaml +595 -0
  198. valuesets/schema/energy/fossil_fuels.yaml +28 -0
  199. valuesets/schema/energy/nuclear/nuclear_facilities.yaml +463 -0
  200. valuesets/schema/energy/nuclear/nuclear_fuel_cycle.yaml +82 -0
  201. valuesets/schema/energy/nuclear/nuclear_fuels.yaml +421 -0
  202. valuesets/schema/energy/nuclear/nuclear_operations.yaml +480 -0
  203. valuesets/schema/energy/nuclear/nuclear_regulatory.yaml +200 -0
  204. valuesets/schema/energy/nuclear/nuclear_safety.yaml +352 -0
  205. valuesets/schema/energy/nuclear/nuclear_waste.yaml +332 -0
  206. valuesets/schema/energy/nuclear/reactor_types.yaml +394 -0
  207. valuesets/schema/environmental_health/exposures.yaml +355 -0
  208. valuesets/schema/generated_slots.yaml +1828 -0
  209. valuesets/schema/geography/geographic_codes.yaml +1018 -0
  210. valuesets/schema/health/vaccination.yaml +102 -0
  211. valuesets/schema/health.yaml +38 -0
  212. valuesets/schema/healthcare.yaml +53 -0
  213. valuesets/schema/industry/extractive_industry.yaml +89 -0
  214. valuesets/schema/industry/mining.yaml +888 -0
  215. valuesets/schema/industry/safety_colors.yaml +375 -0
  216. valuesets/schema/investigation.yaml +64 -0
  217. valuesets/schema/materials_science/characterization_methods.yaml +193 -0
  218. valuesets/schema/materials_science/crystal_structures.yaml +138 -0
  219. valuesets/schema/materials_science/material_properties.yaml +135 -0
  220. valuesets/schema/materials_science/material_types.yaml +151 -0
  221. valuesets/schema/materials_science/pigments_dyes.yaml +465 -0
  222. valuesets/schema/materials_science/synthesis_methods.yaml +186 -0
  223. valuesets/schema/medical/clinical.yaml +610 -0
  224. valuesets/schema/medical/neuroimaging.yaml +325 -0
  225. valuesets/schema/mining_processing.yaml +295 -0
  226. valuesets/schema/physics/states_of_matter.yaml +46 -0
  227. valuesets/schema/slot_mixins.yaml +143 -0
  228. valuesets/schema/social/person_status.yaml +28 -0
  229. valuesets/schema/spatial/spatial_qualifiers.yaml +466 -0
  230. valuesets/schema/statistics/prediction_outcomes.yaml +26 -0
  231. valuesets/schema/statistics.yaml +34 -0
  232. valuesets/schema/time/temporal.yaml +435 -0
  233. valuesets/schema/types.yaml +15 -0
  234. valuesets/schema/units/measurements.yaml +675 -0
  235. valuesets/schema/valuesets.yaml +100 -0
  236. valuesets/schema/visual/colors.yaml +778 -0
  237. valuesets/utils/__init__.py +6 -0
  238. valuesets/utils/comparison.py +102 -0
  239. valuesets/utils/expand_dynamic_enums.py +414 -0
  240. valuesets/utils/mapping_utils.py +236 -0
  241. valuesets/validators/__init__.py +11 -0
  242. valuesets/validators/enum_evaluator.py +669 -0
  243. valuesets/validators/oak_config.yaml +70 -0
  244. valuesets/validators/validate_with_ols.py +241 -0
  245. valuesets-0.3.1.dist-info/METADATA +395 -0
  246. valuesets-0.3.1.dist-info/RECORD +248 -0
  247. valuesets-0.3.1.dist-info/WHEEL +4 -0
  248. valuesets-0.3.1.dist-info/licenses/LICENSE +201 -0
@@ -0,0 +1,229 @@
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+ name: maturity_levels
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+ title: Software and Technology Maturity Levels
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+ description: Value sets for assessing maturity levels of software, technology, and standards across different frameworks and
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+ domains.
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+ id: https://w3id.org/common-value-sets/computing/maturity_levels
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+ imports:
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+ - linkml:types
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+ prefixes:
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+ linkml: https://w3id.org/linkml/
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+ valuesets: https://w3id.org/valuesets/
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+ default_prefix: valuesets
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+ slots:
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+ technology_readiness_level:
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+ description: NASA's Technology Readiness Level scale for assessing the maturity of technologies from basic research through
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+ operational deployment
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+ range: TechnologyReadinessLevel
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+ software_maturity_level:
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+ description: General software maturity assessment levels
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+ range: SoftwareMaturityLevel
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+ capability_maturity_level:
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+ description: CMMI levels for assessing organizational process maturity in software development
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+ range: CapabilityMaturityLevel
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+ standards_maturity_level:
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+ description: Maturity levels for standards and specifications
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+ range: StandardsMaturityLevel
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+ project_maturity_level:
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+ description: General project development maturity assessment
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+ range: ProjectMaturityLevel
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+ data_maturity_level:
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+ description: Levels of data quality, governance, and organizational maturity
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+ range: DataMaturityLevel
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+ open_source_maturity_level:
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+ description: Maturity assessment for open source projects
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+ range: OpenSourceMaturityLevel
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+ enums:
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+ TechnologyReadinessLevel:
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+ title: Technology Readiness Level (TRL)
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+ description: NASA's Technology Readiness Level scale for assessing the maturity of technologies from basic research through
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+ operational deployment
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+ source: https://www.nasa.gov/directorates/heo/scan/engineering/technology/technology_readiness_level
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+ conforms_to: ISO-16290:2013
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+ permissible_values:
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+ TRL_1:
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+ description: Basic principles observed and reported
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+ title: TRL 1 - Basic Principles
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+ TRL_2:
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+ description: Technology concept and/or application formulated
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+ title: TRL 2 - Technology Concept
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+ TRL_3:
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+ description: Analytical and experimental critical function and/or characteristic proof of concept
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+ title: TRL 3 - Experimental Proof of Concept
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+ TRL_4:
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+ description: Component and/or breadboard validation in laboratory environment
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+ title: TRL 4 - Lab Validation
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+ TRL_5:
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+ description: Component and/or breadboard validation in relevant environment
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+ title: TRL 5 - Relevant Environment Validation
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+ TRL_6:
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+ description: System/subsystem model or prototype demonstration in a relevant environment
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+ title: TRL 6 - Prototype Demonstration
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+ TRL_7:
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+ description: System prototype demonstration in an operational environment
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+ title: TRL 7 - Operational Prototype
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+ TRL_8:
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+ description: Actual system completed and qualified through test and demonstration
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+ title: TRL 8 - System Complete
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+ TRL_9:
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+ description: Actual system proven through successful mission operations
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+ title: TRL 9 - Mission Proven
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+ SoftwareMaturityLevel:
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+ title: Software Maturity Level
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+ description: General software maturity assessment levels
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+ permissible_values:
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+ ALPHA:
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+ description: Early development stage with basic functionality, may be unstable
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+ title: Alpha
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+ BETA:
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+ description: Feature-complete but may contain bugs, ready for testing
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+ title: Beta
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+ RELEASE_CANDIDATE:
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+ description: Stable version ready for final testing before release
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+ title: Release Candidate
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+ STABLE:
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+ description: Production-ready with proven stability and reliability
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+ title: Stable
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+ MATURE:
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+ description: Well-established with extensive usage and proven track record
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+ title: Mature
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+ LEGACY:
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+ description: Older version still in use but no longer actively developed
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+ title: Legacy
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+ DEPRECATED:
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+ description: No longer recommended for use, superseded by newer versions
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+ title: Deprecated
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+ OBSOLETE:
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+ description: No longer supported or maintained
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+ title: Obsolete
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+ CapabilityMaturityLevel:
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+ title: Capability Maturity Model Integration (CMMI) Level
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+ description: CMMI levels for assessing organizational process maturity in software development
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+ source: https://cmmiinstitute.com/
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+ conforms_to: CMMI Version 2.0
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+ permissible_values:
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+ LEVEL_1:
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+ description: Initial - Processes are unpredictable, poorly controlled, and reactive
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+ title: Level 1 - Initial
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+ LEVEL_2:
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+ description: Managed - Processes are characterized for projects and reactive
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+ title: Level 2 - Managed
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+ LEVEL_3:
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+ description: Defined - Processes are characterized for the organization and proactive
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+ title: Level 3 - Defined
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+ LEVEL_4:
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+ description: Quantitatively Managed - Processes are measured and controlled
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+ title: Level 4 - Quantitatively Managed
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+ LEVEL_5:
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+ description: Optimizing - Focus on continuous process improvement
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+ title: Level 5 - Optimizing
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+ StandardsMaturityLevel:
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+ title: Standards Development Maturity Level
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+ description: Maturity levels for standards and specifications
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+ permissible_values:
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+ DRAFT:
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+ description: Initial draft under development
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+ title: Draft
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+ WORKING_DRAFT:
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+ description: Work in progress by working group
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+ title: Working Draft
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+ COMMITTEE_DRAFT:
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+ description: Draft reviewed by committee
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+ title: Committee Draft
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+ CANDIDATE_RECOMMENDATION:
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+ description: Mature draft ready for implementation testing
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+ title: Candidate Recommendation
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+ PROPOSED_STANDARD:
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+ description: Stable specification ready for adoption
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+ title: Proposed Standard
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+ STANDARD:
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+ description: Approved and published standard
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+ title: Standard
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+ MATURE_STANDARD:
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+ description: Well-established standard with wide adoption
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+ title: Mature Standard
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+ SUPERSEDED:
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+ description: Replaced by a newer version
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+ title: Superseded
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+ WITHDRAWN:
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+ description: No longer valid or recommended
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+ title: Withdrawn
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+ ProjectMaturityLevel:
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+ title: Project Maturity Level
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+ description: General project development maturity assessment
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+ permissible_values:
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+ CONCEPT:
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+ description: Initial idea or concept stage
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+ title: Concept
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+ PLANNING:
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+ description: Project planning and design phase
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+ title: Planning
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+ DEVELOPMENT:
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+ description: Active development in progress
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+ title: Development
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+ TESTING:
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+ description: Testing and quality assurance phase
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+ title: Testing
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+ PILOT:
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+ description: Limited deployment or pilot testing
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+ title: Pilot
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+ PRODUCTION:
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+ description: Full production deployment
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+ title: Production
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+ MAINTENANCE:
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+ description: Maintenance and support mode
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+ title: Maintenance
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+ END_OF_LIFE:
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+ description: Project reaching end of lifecycle
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+ title: End of Life
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+ DataMaturityLevel:
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+ title: Data Maturity Level
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+ description: Levels of data quality, governance, and organizational maturity
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+ permissible_values:
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+ RAW:
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+ description: Unprocessed, uncleaned data
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+ title: Raw Data
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+ CLEANED:
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+ description: Basic cleaning and validation applied
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+ title: Cleaned Data
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+ STANDARDIZED:
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+ description: Conforms to defined standards and formats
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+ title: Standardized Data
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+ INTEGRATED:
192
+ description: Combined with other data sources
193
+ title: Integrated Data
194
+ CURATED:
195
+ description: Expert-reviewed and validated
196
+ title: Curated Data
197
+ PUBLISHED:
198
+ description: Publicly available with proper metadata
199
+ title: Published Data
200
+ ARCHIVED:
201
+ description: Long-term preservation with access controls
202
+ title: Archived Data
203
+ OpenSourceMaturityLevel:
204
+ title: Open Source Project Maturity
205
+ description: Maturity assessment for open source projects
206
+ permissible_values:
207
+ EXPERIMENTAL:
208
+ description: Early experimental project
209
+ title: Experimental
210
+ EMERGING:
211
+ description: Gaining traction and contributors
212
+ title: Emerging
213
+ ESTABLISHED:
214
+ description: Stable with active community
215
+ title: Established
216
+ MATURE:
217
+ description: Well-established with proven governance
218
+ title: Mature
219
+ DECLINING:
220
+ description: Decreasing activity and maintenance
221
+ title: Declining
222
+ ARCHIVED:
223
+ description: No longer actively maintained
224
+ title: Archived
225
+ license: MIT
226
+ see_also:
227
+ - https://en.wikipedia.org/wiki/Technology_readiness_level
228
+ - https://en.wikipedia.org/wiki/Capability_Maturity_Model
229
+ default_range: string
@@ -0,0 +1,266 @@
1
+ name: mime_types
2
+ title: MIME Types Value Sets
3
+ description: Common MIME (Multipurpose Internet Mail Extensions) types for various file formats and content types used in
4
+ web and application development.
5
+ id: https://w3id.org/linkml/valuesets/computing/mime_types
6
+ imports:
7
+ - linkml:types
8
+ prefixes:
9
+ linkml: https://w3id.org/linkml/
10
+ cvs: https://w3id.org/linkml/valuesets/
11
+ iana: https://www.iana.org/assignments/media-types/
12
+ valuesets: https://w3id.org/valuesets/
13
+ default_prefix: valuesets
14
+ slots:
15
+ mime:
16
+ description: Common MIME types for various file formats
17
+ range: MimeType
18
+ mime_type_category:
19
+ description: Categories of MIME types
20
+ range: MimeTypeCategory
21
+ text_charset:
22
+ description: Character encodings for text content
23
+ range: TextCharset
24
+ compression:
25
+ description: Compression types used with Content-Encoding
26
+ range: CompressionType
27
+ enums:
28
+ MimeType:
29
+ description: Common MIME types for various file formats
30
+ permissible_values:
31
+ APPLICATION_JSON:
32
+ description: JSON format
33
+ meaning: iana:application/json
34
+ APPLICATION_XML:
35
+ description: XML format
36
+ meaning: iana:application/xml
37
+ APPLICATION_PDF:
38
+ description: Adobe Portable Document Format
39
+ meaning: iana:application/pdf
40
+ APPLICATION_ZIP:
41
+ description: ZIP archive
42
+ meaning: iana:application/zip
43
+ APPLICATION_GZIP:
44
+ description: GZIP compressed archive
45
+ meaning: iana:application/gzip
46
+ APPLICATION_OCTET_STREAM:
47
+ description: Binary data
48
+ meaning: iana:application/octet-stream
49
+ APPLICATION_X_WWW_FORM_URLENCODED:
50
+ description: Form data encoded
51
+ meaning: iana:application/x-www-form-urlencoded
52
+ APPLICATION_VND_MS_EXCEL:
53
+ description: Microsoft Excel
54
+ meaning: iana:application/vnd.ms-excel
55
+ APPLICATION_VND_OPENXMLFORMATS_SPREADSHEET:
56
+ description: Microsoft Excel (OpenXML)
57
+ meaning: iana:application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
58
+ APPLICATION_VND_MS_POWERPOINT:
59
+ description: Microsoft PowerPoint
60
+ meaning: iana:application/vnd.ms-powerpoint
61
+ APPLICATION_MSWORD:
62
+ description: Microsoft Word
63
+ meaning: iana:application/msword
64
+ APPLICATION_VND_OPENXMLFORMATS_DOCUMENT:
65
+ description: Microsoft Word (OpenXML)
66
+ meaning: iana:application/vnd.openxmlformats-officedocument.wordprocessingml.document
67
+ APPLICATION_JAVASCRIPT:
68
+ description: JavaScript
69
+ meaning: iana:application/javascript
70
+ APPLICATION_TYPESCRIPT:
71
+ description: TypeScript source code
72
+ meaning: iana:application/typescript
73
+ APPLICATION_SQL:
74
+ description: SQL database format
75
+ meaning: iana:application/sql
76
+ APPLICATION_GRAPHQL:
77
+ description: GraphQL query language
78
+ meaning: iana:application/graphql
79
+ APPLICATION_LD_JSON:
80
+ description: JSON-LD format
81
+ meaning: iana:application/ld+json
82
+ APPLICATION_WASM:
83
+ description: WebAssembly binary format
84
+ meaning: iana:application/wasm
85
+ TEXT_PLAIN:
86
+ description: Plain text
87
+ meaning: iana:text/plain
88
+ TEXT_HTML:
89
+ description: HTML document
90
+ meaning: iana:text/html
91
+ TEXT_CSS:
92
+ description: Cascading Style Sheets
93
+ meaning: iana:text/css
94
+ TEXT_CSV:
95
+ description: Comma-separated values
96
+ meaning: iana:text/csv
97
+ TEXT_MARKDOWN:
98
+ description: Markdown format
99
+ meaning: iana:text/markdown
100
+ TEXT_YAML:
101
+ description: YAML format
102
+ meaning: iana:text/yaml
103
+ TEXT_X_PYTHON:
104
+ description: Python source code
105
+ meaning: iana:text/x-python
106
+ TEXT_X_JAVA:
107
+ description: Java source code
108
+ meaning: iana:text/x-java-source
109
+ TEXT_X_C:
110
+ description: C source code
111
+ meaning: iana:text/x-c
112
+ TEXT_X_CPP:
113
+ description: C++ source code
114
+ meaning: iana:text/x-c++
115
+ TEXT_X_CSHARP:
116
+ description: C# source code
117
+ meaning: iana:text/x-csharp
118
+ TEXT_X_GO:
119
+ description: Go source code
120
+ meaning: iana:text/x-go
121
+ TEXT_X_RUST:
122
+ description: Rust source code
123
+ meaning: iana:text/x-rust
124
+ TEXT_X_RUBY:
125
+ description: Ruby source code
126
+ meaning: iana:text/x-ruby
127
+ TEXT_X_SHELLSCRIPT:
128
+ description: Shell script
129
+ meaning: iana:text/x-shellscript
130
+ IMAGE_JPEG:
131
+ description: JPEG image
132
+ meaning: iana:image/jpeg
133
+ IMAGE_PNG:
134
+ description: PNG image
135
+ meaning: iana:image/png
136
+ IMAGE_GIF:
137
+ description: GIF image
138
+ meaning: iana:image/gif
139
+ IMAGE_SVG_XML:
140
+ description: SVG vector image
141
+ meaning: iana:image/svg+xml
142
+ IMAGE_WEBP:
143
+ description: WebP image
144
+ meaning: iana:image/webp
145
+ IMAGE_BMP:
146
+ description: Bitmap image
147
+ meaning: iana:image/bmp
148
+ IMAGE_ICO:
149
+ description: Icon format
150
+ meaning: iana:image/vnd.microsoft.icon
151
+ IMAGE_TIFF:
152
+ description: TIFF image
153
+ meaning: iana:image/tiff
154
+ IMAGE_AVIF:
155
+ description: AVIF image format
156
+ meaning: iana:image/avif
157
+ AUDIO_MPEG:
158
+ description: MP3 audio
159
+ meaning: iana:audio/mpeg
160
+ AUDIO_WAV:
161
+ description: WAV audio
162
+ meaning: iana:audio/wav
163
+ AUDIO_OGG:
164
+ description: OGG audio
165
+ meaning: iana:audio/ogg
166
+ AUDIO_WEBM:
167
+ description: WebM audio
168
+ meaning: iana:audio/webm
169
+ AUDIO_AAC:
170
+ description: AAC audio
171
+ meaning: iana:audio/aac
172
+ VIDEO_MP4:
173
+ description: MP4 video
174
+ meaning: iana:video/mp4
175
+ VIDEO_MPEG:
176
+ description: MPEG video
177
+ meaning: iana:video/mpeg
178
+ VIDEO_WEBM:
179
+ description: WebM video
180
+ meaning: iana:video/webm
181
+ VIDEO_OGG:
182
+ description: OGG video
183
+ meaning: iana:video/ogg
184
+ VIDEO_QUICKTIME:
185
+ description: QuickTime video
186
+ meaning: iana:video/quicktime
187
+ VIDEO_AVI:
188
+ description: AVI video
189
+ meaning: iana:video/x-msvideo
190
+ FONT_WOFF:
191
+ description: Web Open Font Format
192
+ meaning: iana:font/woff
193
+ FONT_WOFF2:
194
+ description: Web Open Font Format 2
195
+ meaning: iana:font/woff2
196
+ FONT_TTF:
197
+ description: TrueType Font
198
+ meaning: iana:font/ttf
199
+ FONT_OTF:
200
+ description: OpenType Font
201
+ meaning: iana:font/otf
202
+ MULTIPART_FORM_DATA:
203
+ description: Form data with file upload
204
+ meaning: iana:multipart/form-data
205
+ MULTIPART_MIXED:
206
+ description: Mixed multipart message
207
+ meaning: iana:multipart/mixed
208
+ MimeTypeCategory:
209
+ description: Categories of MIME types
210
+ permissible_values:
211
+ APPLICATION:
212
+ description: Application data
213
+ TEXT:
214
+ description: Text documents
215
+ IMAGE:
216
+ description: Image files
217
+ AUDIO:
218
+ description: Audio files
219
+ VIDEO:
220
+ description: Video files
221
+ FONT:
222
+ description: Font files
223
+ MULTIPART:
224
+ description: Multipart messages
225
+ MESSAGE:
226
+ description: Message formats
227
+ MODEL:
228
+ description: 3D models and similar
229
+ TextCharset:
230
+ description: Character encodings for text content
231
+ permissible_values:
232
+ UTF_8:
233
+ description: UTF-8 Unicode encoding
234
+ UTF_16:
235
+ description: UTF-16 Unicode encoding
236
+ UTF_32:
237
+ description: UTF-32 Unicode encoding
238
+ ASCII:
239
+ description: ASCII encoding
240
+ ISO_8859_1:
241
+ description: ISO-8859-1 (Latin-1) encoding
242
+ ISO_8859_2:
243
+ description: ISO-8859-2 (Latin-2) encoding
244
+ WINDOWS_1252:
245
+ description: Windows-1252 encoding
246
+ GB2312:
247
+ description: Simplified Chinese encoding
248
+ SHIFT_JIS:
249
+ description: Japanese encoding
250
+ EUC_KR:
251
+ description: Korean encoding
252
+ BIG5:
253
+ description: Traditional Chinese encoding
254
+ CompressionType:
255
+ description: Compression types used with Content-Encoding
256
+ permissible_values:
257
+ GZIP:
258
+ description: GZIP compression
259
+ DEFLATE:
260
+ description: DEFLATE compression
261
+ BR:
262
+ description: Brotli compression
263
+ COMPRESS:
264
+ description: Unix compress
265
+ IDENTITY:
266
+ description: No compression
@@ -0,0 +1,206 @@
1
+ name: confidence_levels
2
+ title: Confidence Level Value Sets
3
+ description: Value sets for expressing levels of confidence, certainty, and evidence strength in various contexts including
4
+ research, clinical, and data quality assessments.
5
+ id: https://w3id.org/valuesets/valuesets/confidence_levels
6
+ imports:
7
+ - linkml:types
8
+ - core
9
+ prefixes:
10
+ linkml: https://w3id.org/linkml/
11
+ valuesets: https://w3id.org/valuesets/
12
+ NCIT: http://purl.obolibrary.org/obo/NCIT_
13
+ CIO: http://purl.obolibrary.org/obo/CIO_
14
+ OBCS: http://purl.obolibrary.org/obo/OBCS_
15
+ default_prefix: valuesets
16
+ slots:
17
+ confidence_level:
18
+ description: Standard confidence levels based on NCIT (NCI Thesaurus) definitions
19
+ range: ConfidenceLevel
20
+ cio_confidence_level:
21
+ description: Confidence levels from the Confidence Information Ontology (CIO), representing different levels of trust
22
+ in evidence
23
+ range: CIOConfidenceLevel
24
+ obcs_certainty_level:
25
+ description: Certainty levels from the Ontology of Biological and Clinical Statistics (OBCS)
26
+ range: OBCSCertaintyLevel
27
+ ipcc_likelihood_scale:
28
+ description: IPCC (Intergovernmental Panel on Climate Change) standardized likelihood scale used to communicate the assessed
29
+ probability of an outcome or result
30
+ range: IPCCLikelihoodScale
31
+ ipcc_confidence_level:
32
+ description: IPCC confidence qualifiers used to express the degree of confidence in a finding based on the type, amount,
33
+ quality, and consistency of evidence and the degree of agreement
34
+ range: IPCCConfidenceLevel
35
+ ncit_five_point_confidence_scale:
36
+ description: NCIT 5-point subjective confidence scale ranging from "Not at all confident" (1) to "Very confident" (5)
37
+ range: NCITFivePointConfidenceScale
38
+ enums:
39
+ ConfidenceLevel:
40
+ description: Standard confidence levels based on NCIT (NCI Thesaurus) definitions. Used to express the degree of confidence
41
+ in evidence, data, or assertions.
42
+ source: http://purl.obolibrary.org/obo/ncit.owl
43
+ conforms_to: NCI Thesaurus
44
+ permissible_values:
45
+ HIGH_CONFIDENCE:
46
+ description: A response indicating a high level of confidence.
47
+ meaning: NCIT:C129479
48
+ MODERATE_CONFIDENCE:
49
+ description: A response indicating a moderate level of confidence.
50
+ meaning: NCIT:C129480
51
+ LOW_CONFIDENCE:
52
+ description: A response indicating a low level of confidence.
53
+ meaning: NCIT:C129481
54
+ VERY_LOW_OR_NO_CONFIDENCE:
55
+ description: A response indicating a very low level of confidence or an absence.
56
+ meaning: NCIT:C129482
57
+ aliases:
58
+ - Very Low Confidence or No Confidence
59
+ CIOConfidenceLevel:
60
+ description: Confidence levels from the Confidence Information Ontology (CIO), representing different levels of trust
61
+ in evidence.
62
+ permissible_values:
63
+ HIGH:
64
+ description: A confidence level representing a high trust in an evidence.
65
+ meaning: CIO:0000029
66
+ aliases:
67
+ - high confidence level
68
+ exact_mappings:
69
+ - NCIT:C129479
70
+ MEDIUM:
71
+ description: A confidence level representing a moderate trust in an evidence.
72
+ meaning: CIO:0000030
73
+ aliases:
74
+ - medium confidence level
75
+ exact_mappings:
76
+ - NCIT:C129480
77
+ LOW:
78
+ description: A confidence level representing an absence of trust in an evidence.
79
+ meaning: CIO:0000031
80
+ aliases:
81
+ - low confidence level
82
+ exact_mappings:
83
+ - NCIT:C129481
84
+ OBCSCertaintyLevel:
85
+ description: Certainty levels from the Ontology of Biological and Clinical Statistics (OBCS). These terms are used to
86
+ express degrees of certainty in statistical and clinical contexts.
87
+ permissible_values:
88
+ DEFINITIVE:
89
+ description: Definitive certainty level - the highest degree of certainty.
90
+ meaning: OBCS:0000368
91
+ aliases:
92
+ - definitive certainty level
93
+ close_mappings:
94
+ - NCIT:C129479
95
+ HIGH:
96
+ description: High certainty level - strong confidence but not absolute.
97
+ meaning: OBCS:0000369
98
+ aliases:
99
+ - high certainty level
100
+ exact_mappings:
101
+ - NCIT:C129479
102
+ INTERMEDIATE:
103
+ description: Intermediate certainty level - moderate degree of certainty.
104
+ meaning: OBCS:0000370
105
+ aliases:
106
+ - intermediate certainty level
107
+ exact_mappings:
108
+ - NCIT:C129480
109
+ IPCCLikelihoodScale:
110
+ description: IPCC (Intergovernmental Panel on Climate Change) standardized likelihood scale used to communicate the assessed
111
+ probability of an outcome or result. Widely used in climate science and environmental assessments.
112
+ permissible_values:
113
+ VIRTUALLY_CERTAIN:
114
+ description: 99-100% probability of occurrence/truth.
115
+ annotations:
116
+ probability_range: 0.99-1.00
117
+ EXTREMELY_LIKELY:
118
+ description: 95-100% probability of occurrence/truth.
119
+ annotations:
120
+ probability_range: 0.95-1.00
121
+ VERY_LIKELY:
122
+ description: 90-100% probability of occurrence/truth.
123
+ annotations:
124
+ probability_range: 0.90-1.00
125
+ LIKELY:
126
+ description: 66-100% probability of occurrence/truth.
127
+ annotations:
128
+ probability_range: 0.66-1.00
129
+ MORE_LIKELY_THAN_NOT:
130
+ description: Greater than 50% to 100% probability of occurrence/truth.
131
+ annotations:
132
+ probability_range: 0.50-1.00
133
+ ABOUT_AS_LIKELY_AS_NOT:
134
+ description: 33-66% probability of occurrence/truth.
135
+ annotations:
136
+ probability_range: 0.33-0.66
137
+ UNLIKELY:
138
+ description: 0-33% probability of occurrence/truth.
139
+ annotations:
140
+ probability_range: 0.00-0.33
141
+ VERY_UNLIKELY:
142
+ description: 0-10% probability of occurrence/truth.
143
+ annotations:
144
+ probability_range: 0.00-0.10
145
+ EXTREMELY_UNLIKELY:
146
+ description: 0-5% probability of occurrence/truth.
147
+ annotations:
148
+ probability_range: 0.00-0.05
149
+ EXCEPTIONALLY_UNLIKELY:
150
+ description: 0-1% probability of occurrence/truth.
151
+ annotations:
152
+ probability_range: 0.00-0.01
153
+ IPCCConfidenceLevel:
154
+ description: IPCC confidence qualifiers used to express the degree of confidence in a finding based on the type, amount,
155
+ quality, and consistency of evidence and the degree of agreement.
156
+ permissible_values:
157
+ VERY_HIGH_CONFIDENCE:
158
+ description: Very high confidence in the validity of a finding.
159
+ close_mappings:
160
+ - NCIT:C129479
161
+ HIGH_CONFIDENCE:
162
+ description: High confidence in the validity of a finding.
163
+ exact_mappings:
164
+ - NCIT:C129479
165
+ MEDIUM_CONFIDENCE:
166
+ description: Medium confidence in the validity of a finding.
167
+ exact_mappings:
168
+ - NCIT:C129480
169
+ LOW_CONFIDENCE:
170
+ description: Low confidence in the validity of a finding.
171
+ exact_mappings:
172
+ - NCIT:C129481
173
+ VERY_LOW_CONFIDENCE:
174
+ description: Very low confidence in the validity of a finding.
175
+ exact_mappings:
176
+ - NCIT:C129482
177
+ NCITFivePointConfidenceScale:
178
+ description: NCIT 5-point subjective confidence scale ranging from "Not at all confident" (1) to "Very confident" (5).
179
+ Used in clinical assessments and questionnaires.
180
+ permissible_values:
181
+ NOT_AT_ALL_CONFIDENT:
182
+ description: A subjective score of 1 - Not at all confident.
183
+ meaning: NCIT:C153491
184
+ aliases:
185
+ - Confidence 1
186
+ SLIGHTLY_CONFIDENT:
187
+ description: A subjective score of 2 - Slightly confident.
188
+ meaning: NCIT:C153492
189
+ aliases:
190
+ - Confidence 2
191
+ SOMEWHAT_CONFIDENT:
192
+ description: A subjective score of 3 - Somewhat confident.
193
+ meaning: NCIT:C153493
194
+ aliases:
195
+ - Confidence 3
196
+ MODERATELY_CONFIDENT:
197
+ description: A subjective score of 4 - Moderately confident.
198
+ meaning: NCIT:C153494
199
+ aliases:
200
+ - Confidence 4
201
+ VERY_CONFIDENT:
202
+ description: A subjective score of 5 - Very confident.
203
+ meaning: NCIT:C153495
204
+ aliases:
205
+ - Confidence 5
206
+ default_range: string