valuesets 0.3.1__py3-none-any.whl

valuesets/enums/medical/neuroimaging.py

@@ -0,0 +1,119 @@
+"""
+Neuroimaging Value Sets
+
+Value sets for neuroimaging including MRI modalities, fMRI paradigms, acquisition parameters, and image analysis methods.
+
+Generated from: medical/neuroimaging.yaml
+"""
+
+from __future__ import annotations
+
+from typing import Dict, Any, Optional
+from valuesets.generators.rich_enum import RichEnum
+
+class MRIModalityEnum(RichEnum):
+    """
+    MRI imaging modalities and techniques
+    """
+    # Enum members
+    STRUCTURAL_T1 = "STRUCTURAL_T1"
+    STRUCTURAL_T2 = "STRUCTURAL_T2"
+    FLAIR = "FLAIR"
+    BOLD_FMRI = "BOLD_FMRI"
+    ASL = "ASL"
+    DWI = "DWI"
+    DTI = "DTI"
+    PERFUSION_DSC = "PERFUSION_DSC"
+    PERFUSION_DCE = "PERFUSION_DCE"
+    SWI = "SWI"
+    TASK_FMRI = "TASK_FMRI"
+    RESTING_STATE_FMRI = "RESTING_STATE_FMRI"
+    FUNCTIONAL_CONNECTIVITY = "FUNCTIONAL_CONNECTIVITY"
+
+# Set metadata after class creation
+MRIModalityEnum._metadata = {
+    "STRUCTURAL_T1": {'description': 'High-resolution anatomical imaging with T1 contrast', 'meaning': 'NCIT:C116455', 'annotations': {'contrast_mechanism': 'T1 relaxation', 'typical_use': 'anatomical reference, volumetric analysis', 'tissue_contrast': 'good gray/white matter contrast'}, 'aliases': ['High Field Strength Magnetic Resonance Imaging']},
+    "STRUCTURAL_T2": {'description': 'Structural imaging with T2 contrast', 'meaning': 'NCIT:C116456', 'annotations': {'contrast_mechanism': 'T2 relaxation', 'typical_use': 'pathology detection, CSF visualization', 'tissue_contrast': 'good fluid contrast'}, 'aliases': ['Low Field Strength Magnetic Resonance Imaging']},
+    "FLAIR": {'description': 'T2-weighted sequence with CSF signal suppressed', 'meaning': 'NCIT:C82392', 'annotations': {'contrast_mechanism': 'T2 with fluid suppression', 'typical_use': 'lesion detection, periventricular pathology', 'advantage': 'suppresses CSF signal'}},
+    "BOLD_FMRI": {'description': 'Functional MRI based on blood oxygenation changes', 'meaning': 'NCIT:C17958', 'annotations': {'contrast_mechanism': 'BOLD signal', 'typical_use': 'brain activation mapping', 'temporal_resolution': 'seconds'}, 'aliases': ['Functional Magnetic Resonance Imaging']},
+    "ASL": {'description': 'Perfusion imaging using magnetically labeled blood', 'meaning': 'NCIT:C116450', 'annotations': {'contrast_mechanism': 'arterial blood labeling', 'typical_use': 'cerebral blood flow measurement', 'advantage': 'no contrast agent required'}, 'aliases': ['Arterial Spin Labeling Magnetic Resonance Imaging']},
+    "DWI": {'description': 'Imaging sensitive to water molecule diffusion', 'meaning': 'mesh:D038524', 'annotations': {'contrast_mechanism': 'water diffusion', 'typical_use': 'stroke detection, fiber tracking', 'parameter': 'apparent diffusion coefficient'}},
+    "DTI": {'description': 'Advanced diffusion imaging with directional information', 'meaning': 'NCIT:C64862', 'annotations': {'contrast_mechanism': 'directional diffusion', 'typical_use': 'white matter tractography', 'parameters': 'fractional anisotropy, mean diffusivity'}},
+    "PERFUSION_DSC": {'description': 'Perfusion imaging using contrast agent bolus', 'meaning': 'NCIT:C116459', 'annotations': {'contrast_mechanism': 'contrast agent dynamics', 'typical_use': 'cerebral blood flow, blood volume', 'requires': 'gadolinium contrast'}, 'aliases': ['Secretin-Enhanced Magnetic Resonance Imaging']},
+    "PERFUSION_DCE": {'description': 'Perfusion imaging with pharmacokinetic modeling', 'meaning': 'NCIT:C116458', 'annotations': {'contrast_mechanism': 'contrast enhancement kinetics', 'typical_use': 'blood-brain barrier permeability', 'analysis': 'pharmacokinetic modeling'}, 'aliases': ['Multiparametric Magnetic Resonance Imaging']},
+    "SWI": {'description': 'High-resolution venography and iron detection', 'meaning': 'NCIT:C121377', 'annotations': {'contrast_mechanism': 'magnetic susceptibility', 'typical_use': 'venography, microbleeds, iron deposits', 'strength': 'high field preferred'}},
+    "TASK_FMRI": {'description': 'fMRI during specific cognitive or motor tasks', 'meaning': 'NCIT:C178023', 'annotations': {'paradigm': 'stimulus-response', 'typical_use': 'localization of brain functions', 'analysis': 'statistical parametric mapping'}, 'aliases': ['Task Functional Magnetic Resonance Imaging']},
+    "RESTING_STATE_FMRI": {'description': 'fMRI acquired at rest without explicit tasks', 'meaning': 'NCIT:C178024', 'annotations': {'paradigm': 'no task', 'typical_use': 'functional connectivity analysis', 'networks': 'default mode, attention, executive'}, 'aliases': ['Resting Functional Magnetic Resonance Imaging']},
+    "FUNCTIONAL_CONNECTIVITY": {'description': 'Analysis of temporal correlations between brain regions', 'meaning': 'NCIT:C116454', 'annotations': {'analysis_type': 'connectivity mapping', 'typical_use': 'network analysis', 'metric': 'correlation coefficients'}, 'aliases': ['Functional Connectivity Magnetic Resonance Imaging']},
+}
+
+class MRISequenceTypeEnum(RichEnum):
+    """
+    MRI pulse sequence types
+    """
+    # Enum members
+    GRADIENT_ECHO = "GRADIENT_ECHO"
+    SPIN_ECHO = "SPIN_ECHO"
+    EPI = "EPI"
+    MPRAGE = "MPRAGE"
+    SPACE = "SPACE"
+    TRUFI = "TRUFI"
+
+# Set metadata after class creation
+MRISequenceTypeEnum._metadata = {
+    "GRADIENT_ECHO": {'description': 'Fast imaging sequence using gradient reversal', 'meaning': 'NCIT:C154542', 'annotations': {'speed': 'fast', 'typical_use': 'T2*, functional imaging', 'artifact_sensitivity': 'susceptible to magnetic field inhomogeneity'}, 'aliases': ['Gradient Echo MRI']},
+    "SPIN_ECHO": {'description': 'Sequence using 180-degree refocusing pulse', 'meaning': 'CHMO:0001868', 'annotations': {'speed': 'slower', 'typical_use': 'T2 imaging, reduced artifacts', 'artifact_resistance': 'good'}, 'aliases': ['spin echo pulse sequence']},
+    "EPI": {'description': 'Ultrafast imaging sequence', 'meaning': 'NCIT:C17558', 'annotations': {'speed': 'very fast', 'typical_use': 'functional MRI, diffusion imaging', 'temporal_resolution': 'subsecond'}},
+    "MPRAGE": {'description': 'T1-weighted 3D sequence with preparation pulse', 'meaning': 'NCIT:C118462', 'annotations': {'image_type': 'T1-weighted', 'typical_use': 'high-resolution anatomical imaging', 'dimension': '3D'}, 'aliases': ['Magnetization-Prepared Rapid Gradient Echo MRI']},
+    "SPACE": {'description': '3D turbo spin echo sequence', 'annotations': {'image_type': 'T2-weighted', 'typical_use': 'high-resolution T2 imaging', 'dimension': '3D'}},
+    "TRUFI": {'description': 'Balanced steady-state free precession sequence', 'meaning': 'NCIT:C200534', 'annotations': {'contrast': 'mixed T1/T2', 'typical_use': 'cardiac imaging, fast scanning', 'signal': 'high'}, 'aliases': ['Constructive Interference In Steady State']},
+}
+
+class MRIContrastTypeEnum(RichEnum):
+    """
+    MRI image contrast mechanisms
+    """
+    # Enum members
+    T1_WEIGHTED = "T1_WEIGHTED"
+    T2_WEIGHTED = "T2_WEIGHTED"
+    T2_STAR = "T2_STAR"
+    PROTON_DENSITY = "PROTON_DENSITY"
+    DIFFUSION_WEIGHTED = "DIFFUSION_WEIGHTED"
+    PERFUSION_WEIGHTED = "PERFUSION_WEIGHTED"
+
+# Set metadata after class creation
+MRIContrastTypeEnum._metadata = {
+    "T1_WEIGHTED": {'description': 'Image contrast based on T1 relaxation times', 'meaning': 'NCIT:C180727', 'annotations': {'tissue_contrast': 'gray matter darker than white matter', 'typical_use': 'anatomical structure'}, 'aliases': ['T1-Weighted Magnetic Resonance Imaging']},
+    "T2_WEIGHTED": {'description': 'Image contrast based on T2 relaxation times', 'meaning': 'NCIT:C180729', 'annotations': {'tissue_contrast': 'CSF bright, gray matter brighter than white', 'typical_use': 'pathology detection'}, 'aliases': ['T2-Weighted Magnetic Resonance Imaging']},
+    "T2_STAR": {'description': 'Image contrast sensitive to magnetic susceptibility', 'meaning': 'NCIT:C156447', 'annotations': {'sensitivity': 'blood, iron, air-tissue interfaces', 'typical_use': 'functional imaging, venography'}, 'aliases': ['T2 (Observed)-Weighted Imaging']},
+    "PROTON_DENSITY": {'description': 'Image contrast based on hydrogen density', 'meaning': 'NCIT:C170797', 'annotations': {'tissue_contrast': 'proportional to water content', 'typical_use': 'joint imaging, some brain pathology'}, 'aliases': ['Proton Density MRI']},
+    "DIFFUSION_WEIGHTED": {'description': 'Image contrast based on water diffusion', 'meaning': 'NCIT:C111116', 'annotations': {'sensitivity': 'molecular motion', 'typical_use': 'stroke, tumor cellularity'}, 'aliases': ['Diffusion Weighted Imaging']},
+    "PERFUSION_WEIGHTED": {'description': 'Image contrast based on blood flow dynamics', 'meaning': 'mesh:D000098642', 'annotations': {'measurement': 'cerebral blood flow/volume', 'typical_use': 'stroke, tumor vascularity'}},
+}
+
+class FMRIParadigmTypeEnum(RichEnum):
+    """
+    fMRI experimental paradigm types
+    """
+    # Enum members
+    BLOCK_DESIGN = "BLOCK_DESIGN"
+    EVENT_RELATED = "EVENT_RELATED"
+    MIXED_DESIGN = "MIXED_DESIGN"
+    RESTING_STATE = "RESTING_STATE"
+    NATURALISTIC = "NATURALISTIC"
+
+# Set metadata after class creation
+FMRIParadigmTypeEnum._metadata = {
+    "BLOCK_DESIGN": {'description': 'Alternating blocks of task and rest conditions', 'meaning': 'STATO:0000046', 'annotations': {'duration': 'typically 15-30 seconds per block', 'advantage': 'high statistical power', 'typical_use': 'robust activation detection'}},
+    "EVENT_RELATED": {'description': 'Brief stimuli presented at varying intervals', 'meaning': 'EDAM:topic_3678', 'annotations': {'duration': 'single events (seconds)', 'advantage': 'flexible timing, event separation', 'typical_use': 'studying cognitive processes'}, 'aliases': ['Experimental design and studies']},
+    "MIXED_DESIGN": {'description': 'Combination of block and event-related elements', 'meaning': 'EDAM:topic_3678', 'annotations': {'flexibility': 'high', 'advantage': 'sustained and transient responses', 'complexity': 'high'}, 'aliases': ['Experimental design and studies']},
+    "RESTING_STATE": {'description': 'No explicit task, spontaneous brain activity', 'meaning': 'NCIT:C178024', 'annotations': {'instruction': 'rest, eyes open/closed', 'duration': 'typically 5-10 minutes', 'analysis': 'functional connectivity'}, 'aliases': ['Resting Functional Magnetic Resonance Imaging']},
+    "NATURALISTIC": {'description': 'Ecologically valid stimuli (movies, stories)', 'meaning': 'EDAM:topic_3678', 'annotations': {'stimulus_type': 'complex, realistic', 'advantage': 'ecological validity', 'analysis': 'inter-subject correlation'}, 'aliases': ['Experimental design and studies']},
+}
+
+__all__ = [
+    "MRIModalityEnum",
+    "MRISequenceTypeEnum",
+    "MRIContrastTypeEnum",
+    "FMRIParadigmTypeEnum",
+]

valuesets/enums/mining_processing.py

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+"""
+Mining and Mineral Processing Value Sets
+
+Value sets for mining operations, mineral processing, beneficiation, and in-situ extraction, including bioleaching and autonomous mining systems.
+
+Generated from: mining_processing.yaml
+"""
+
+from __future__ import annotations
+
+from typing import Dict, Any, Optional
+from valuesets.generators.rich_enum import RichEnum
+
+class RelativeTimeEnum(RichEnum):
+    # Enum members
+    BEFORE = "BEFORE"
+    AFTER = "AFTER"
+    AT_SAME_TIME_AS = "AT_SAME_TIME_AS"
+
+# Set metadata after class creation
+RelativeTimeEnum._metadata = {
+}
+
+class PresenceEnum(RichEnum):
+    # Enum members
+    PRESENT = "PRESENT"
+    ABSENT = "ABSENT"
+    BELOW_DETECTION_LIMIT = "BELOW_DETECTION_LIMIT"
+    ABOVE_DETECTION_LIMIT = "ABOVE_DETECTION_LIMIT"
+
+# Set metadata after class creation
+PresenceEnum._metadata = {
+    "PRESENT": {'description': 'The entity is present'},
+    "ABSENT": {'description': 'The entity is absent'},
+    "BELOW_DETECTION_LIMIT": {'description': 'The entity is below the detection limit'},
+    "ABOVE_DETECTION_LIMIT": {'description': 'The entity is above the detection limit'},
+}
+
+class MineralogyFeedstockClass(RichEnum):
+    """
+    Types of mineral feedstock sources for extraction and processing operations, including primary and secondary sources.
+    
+    """
+    # Enum members
+    HARDROCK_PRIMARY = "HARDROCK_PRIMARY"
+    TAILINGS_LEGACY = "TAILINGS_LEGACY"
+    WASTE_PILES = "WASTE_PILES"
+    COAL_BYPRODUCT = "COAL_BYPRODUCT"
+    E_WASTE = "E_WASTE"
+    BRINES = "BRINES"
+
+# Set metadata after class creation
+MineralogyFeedstockClass._metadata = {
+    "HARDROCK_PRIMARY": {'description': 'Primary ore from hardrock mining operations'},
+    "TAILINGS_LEGACY": {'description': 'Historical mine tailings available for reprocessing'},
+    "WASTE_PILES": {'description': 'Accumulated mining waste materials'},
+    "COAL_BYPRODUCT": {'description': 'Byproducts from coal mining and processing'},
+    "E_WASTE": {'description': 'Electronic waste containing recoverable metals'},
+    "BRINES": {'description': 'Saline water sources containing dissolved minerals'},
+}
+
+class BeneficiationPathway(RichEnum):
+    """
+    Methods for mineral separation and concentration aligned with advanced ore processing initiatives (AOI-2).
+    
+    """
+    # Enum members
+    ORE_SORTING = "ORE_SORTING"
+    DENSE_MEDIUM_SEPARATION = "DENSE_MEDIUM_SEPARATION"
+    MICROWAVE_PREWEAKENING = "MICROWAVE_PREWEAKENING"
+    ELECTRIC_PULSE_PREWEAKENING = "ELECTRIC_PULSE_PREWEAKENING"
+    GRINDING_DYNAMIC = "GRINDING_DYNAMIC"
+    ELECTROSTATIC_SEP = "ELECTROSTATIC_SEP"
+    MAGNETIC_SEP = "MAGNETIC_SEP"
+    FLOTATION_LOW_H2O = "FLOTATION_LOW_H2O"
+    BIO_BENEFICIATION = "BIO_BENEFICIATION"
+
+# Set metadata after class creation
+BeneficiationPathway._metadata = {
+    "ORE_SORTING": {'description': 'Sensor-based sorting of ore particles'},
+    "DENSE_MEDIUM_SEPARATION": {'description': 'Gravity separation using dense media'},
+    "MICROWAVE_PREWEAKENING": {'description': 'Microwave treatment to weaken ore structure'},
+    "ELECTRIC_PULSE_PREWEAKENING": {'description': 'High-voltage electric pulse fragmentation'},
+    "GRINDING_DYNAMIC": {'description': 'Dynamic grinding optimization systems'},
+    "ELECTROSTATIC_SEP": {'description': 'Electrostatic separation of minerals'},
+    "MAGNETIC_SEP": {'description': 'Magnetic separation of ferromagnetic minerals'},
+    "FLOTATION_LOW_H2O": {'description': 'Low-water flotation processes'},
+    "BIO_BENEFICIATION": {'description': 'Biological methods for mineral beneficiation'},
+}
+
+class InSituChemistryRegime(RichEnum):
+    """
+    Chemical leaching systems for in-situ extraction with associated parameters including pH, Eh, temperature, and ionic strength.
+    
+    """
+    # Enum members
+    ACIDIC_SULFATE = "ACIDIC_SULFATE"
+    ACIDIC_CHLORIDE = "ACIDIC_CHLORIDE"
+    AMMONIA_BASED = "AMMONIA_BASED"
+    ORGANIC_ACID = "ORGANIC_ACID"
+    BIOLEACH_SULFUR_OXIDIZING = "BIOLEACH_SULFUR_OXIDIZING"
+    BIOLEACH_IRON_OXIDIZING = "BIOLEACH_IRON_OXIDIZING"
+
+# Set metadata after class creation
+InSituChemistryRegime._metadata = {
+    "ACIDIC_SULFATE": {'description': 'Sulfuric acid-based leaching system'},
+    "ACIDIC_CHLORIDE": {'description': 'Hydrochloric acid or chloride-based leaching'},
+    "AMMONIA_BASED": {'description': 'Ammonia or ammonium-based leaching system'},
+    "ORGANIC_ACID": {'description': 'Organic acid leaching (citric, oxalic, etc.)'},
+    "BIOLEACH_SULFUR_OXIDIZING": {'description': 'Bioleaching using sulfur-oxidizing bacteria'},
+    "BIOLEACH_IRON_OXIDIZING": {'description': 'Bioleaching using iron-oxidizing bacteria'},
+}
+
+class ExtractableTargetElement(RichEnum):
+    """
+    Target elements for extraction, particularly rare earth elements (REE) and critical minerals.
+    
+    """
+    # Enum members
+    REE_LA = "REE_LA"
+    REE_CE = "REE_CE"
+    REE_PR = "REE_PR"
+    REE_ND = "REE_ND"
+    REE_PM = "REE_PM"
+    REE_SM = "REE_SM"
+    REE_EU = "REE_EU"
+    REE_GD = "REE_GD"
+    REE_TB = "REE_TB"
+    REE_DY = "REE_DY"
+    REE_HO = "REE_HO"
+    REE_ER = "REE_ER"
+    REE_TM = "REE_TM"
+    REE_YB = "REE_YB"
+    REE_LU = "REE_LU"
+    SC = "SC"
+    CO = "CO"
+    NI = "NI"
+    LI = "LI"
+
+# Set metadata after class creation
+ExtractableTargetElement._metadata = {
+    "REE_LA": {'description': 'Lanthanum'},
+    "REE_CE": {'description': 'Cerium'},
+    "REE_PR": {'description': 'Praseodymium'},
+    "REE_ND": {'description': 'Neodymium'},
+    "REE_PM": {'description': 'Promethium'},
+    "REE_SM": {'description': 'Samarium'},
+    "REE_EU": {'description': 'Europium'},
+    "REE_GD": {'description': 'Gadolinium'},
+    "REE_TB": {'description': 'Terbium'},
+    "REE_DY": {'description': 'Dysprosium'},
+    "REE_HO": {'description': 'Holmium'},
+    "REE_ER": {'description': 'Erbium'},
+    "REE_TM": {'description': 'Thulium'},
+    "REE_YB": {'description': 'Ytterbium'},
+    "REE_LU": {'description': 'Lutetium'},
+    "SC": {'description': 'Scandium'},
+    "CO": {'description': 'Cobalt'},
+    "NI": {'description': 'Nickel'},
+    "LI": {'description': 'Lithium'},
+}
+
+class SensorWhileDrillingFeature(RichEnum):
+    """
+    Measurement while drilling (MWD) and logging while drilling (LWD) features for orebody ML and geosteering applications.
+    
+    """
+    # Enum members
+    WOB = "WOB"
+    ROP = "ROP"
+    TORQUE = "TORQUE"
+    MWD_GAMMA = "MWD_GAMMA"
+    MWD_RESISTIVITY = "MWD_RESISTIVITY"
+    MUD_LOSS = "MUD_LOSS"
+    VIBRATION = "VIBRATION"
+    RSS_ANGLE = "RSS_ANGLE"
+
+# Set metadata after class creation
+SensorWhileDrillingFeature._metadata = {
+    "WOB": {'description': 'Weight on bit measurement'},
+    "ROP": {'description': 'Rate of penetration'},
+    "TORQUE": {'description': 'Rotational torque measurement'},
+    "MWD_GAMMA": {'description': 'Gamma ray logging while drilling'},
+    "MWD_RESISTIVITY": {'description': 'Resistivity logging while drilling'},
+    "MUD_LOSS": {'description': 'Drilling mud loss measurement'},
+    "VIBRATION": {'description': 'Drill string vibration monitoring'},
+    "RSS_ANGLE": {'description': 'Rotary steerable system angle'},
+}
+
+class ProcessPerformanceMetric(RichEnum):
+    """
+    Key performance indicators for mining and processing operations tied to SMART milestones and sustainability goals.
+    
+    """
+    # Enum members
+    RECOVERY_PCT = "RECOVERY_PCT"
+    SELECTIVITY_INDEX = "SELECTIVITY_INDEX"
+    SPECIFIC_ENERGY_KWH_T = "SPECIFIC_ENERGY_KWH_T"
+    WATER_INTENSITY_L_T = "WATER_INTENSITY_L_T"
+    REAGENT_INTENSITY_KG_T = "REAGENT_INTENSITY_KG_T"
+    CO2E_KG_T = "CO2E_KG_T"
+    TAILINGS_MASS_REDUCTION_PCT = "TAILINGS_MASS_REDUCTION_PCT"
+
+# Set metadata after class creation
+ProcessPerformanceMetric._metadata = {
+    "RECOVERY_PCT": {'description': 'Percentage recovery of target material'},
+    "SELECTIVITY_INDEX": {'description': 'Selectivity index for separation processes'},
+    "SPECIFIC_ENERGY_KWH_T": {'description': 'Specific energy consumption in kWh per tonne'},
+    "WATER_INTENSITY_L_T": {'description': 'Water usage intensity in liters per tonne'},
+    "REAGENT_INTENSITY_KG_T": {'description': 'Reagent consumption in kg per tonne'},
+    "CO2E_KG_T": {'description': 'CO2 equivalent emissions in kg per tonne'},
+    "TAILINGS_MASS_REDUCTION_PCT": {'description': 'Percentage reduction in tailings mass'},
+}
+
+class BioleachOrganism(RichEnum):
+    """
+    Microorganisms used in bioleaching and biomining operations, including engineered strains.
+    
+    """
+    # Enum members
+    ACIDITHIOBACILLUS_FERROOXIDANS = "ACIDITHIOBACILLUS_FERROOXIDANS"
+    LEPTOSPIRILLUM_FERROOXIDANS = "LEPTOSPIRILLUM_FERROOXIDANS"
+    ASPERGILLUS_NIGER = "ASPERGILLUS_NIGER"
+    ENGINEERED_STRAIN = "ENGINEERED_STRAIN"
+
+# Set metadata after class creation
+BioleachOrganism._metadata = {
+    "ACIDITHIOBACILLUS_FERROOXIDANS": {'description': 'Iron and sulfur oxidizing bacterium', 'meaning': 'NCBITaxon:920'},
+    "LEPTOSPIRILLUM_FERROOXIDANS": {'description': 'Iron oxidizing bacterium', 'meaning': 'NCBITaxon:180'},
+    "ASPERGILLUS_NIGER": {'description': 'Organic acid producing fungus', 'meaning': 'NCBITaxon:5061'},
+    "ENGINEERED_STRAIN": {'description': 'Genetically modified organism for enhanced bioleaching'},
+}
+
+class BioleachMode(RichEnum):
+    """
+    Mechanisms of bioleaching including indirect and direct bacterial action.
+    
+    """
+    # Enum members
+    INDIRECT_BIOLEACH_ORGANIC_ACIDS = "INDIRECT_BIOLEACH_ORGANIC_ACIDS"
+    SULFUR_OXIDATION = "SULFUR_OXIDATION"
+    IRON_OXIDATION = "IRON_OXIDATION"
+
+# Set metadata after class creation
+BioleachMode._metadata = {
+    "INDIRECT_BIOLEACH_ORGANIC_ACIDS": {'description': 'Indirect bioleaching through organic acid production'},
+    "SULFUR_OXIDATION": {'description': 'Direct bacterial oxidation of sulfur compounds'},
+    "IRON_OXIDATION": {'description': 'Direct bacterial oxidation of iron compounds'},
+}
+
+class AutonomyLevel(RichEnum):
+    """
+    Levels of autonomy for mining systems including drilling, hauling, and sorting robots (relevant for Topic 1 initiatives).
+    
+    """
+    # Enum members
+    ASSISTIVE = "ASSISTIVE"
+    SUPERVISED_AUTONOMY = "SUPERVISED_AUTONOMY"
+    SEMI_AUTONOMOUS = "SEMI_AUTONOMOUS"
+    FULLY_AUTONOMOUS = "FULLY_AUTONOMOUS"
+
+# Set metadata after class creation
+AutonomyLevel._metadata = {
+    "ASSISTIVE": {'description': 'Human operator with assistive technologies'},
+    "SUPERVISED_AUTONOMY": {'description': 'Autonomous operation with human supervision'},
+    "SEMI_AUTONOMOUS": {'description': 'Partial autonomy with human intervention capability'},
+    "FULLY_AUTONOMOUS": {'description': 'Complete autonomous operation without human intervention'},
+}
+
+class RegulatoryConstraint(RichEnum):
+    """
+    Regulatory and community constraints affecting mining operations, particularly for in-situ extraction and community engagement.
+    
+    """
+    # Enum members
+    AQUIFER_PROTECTION = "AQUIFER_PROTECTION"
+    EMISSIONS_CAP = "EMISSIONS_CAP"
+    CULTURAL_HERITAGE_ZONE = "CULTURAL_HERITAGE_ZONE"
+    WATER_RIGHTS_LIMIT = "WATER_RIGHTS_LIMIT"
+
+# Set metadata after class creation
+RegulatoryConstraint._metadata = {
+    "AQUIFER_PROTECTION": {'description': 'Requirements for groundwater and aquifer protection'},
+    "EMISSIONS_CAP": {'description': 'Limits on atmospheric emissions'},
+    "CULTURAL_HERITAGE_ZONE": {'description': 'Protection of cultural heritage sites'},
+    "WATER_RIGHTS_LIMIT": {'description': 'Restrictions based on water usage rights'},
+}
+
+__all__ = [
+    "RelativeTimeEnum",
+    "PresenceEnum",
+    "MineralogyFeedstockClass",
+    "BeneficiationPathway",
+    "InSituChemistryRegime",
+    "ExtractableTargetElement",
+    "SensorWhileDrillingFeature",
+    "ProcessPerformanceMetric",
+    "BioleachOrganism",
+    "BioleachMode",
+    "AutonomyLevel",
+    "RegulatoryConstraint",
+]

valuesets/enums/physics/__init__.py

@@ -0,0 +1 @@
+"""Auto-generated package."""

valuesets/enums/physics/states_of_matter.py

@@ -0,0 +1,46 @@
+"""
+valuesets-physics-states-of-matter
+
+Physics-related value sets for states of matter
+
+Generated from: physics/states_of_matter.yaml
+"""
+
+from __future__ import annotations
+
+from typing import Dict, Any, Optional
+from valuesets.generators.rich_enum import RichEnum
+
+class StateOfMatterEnum(RichEnum):
+    """
+    The physical state or phase of matter
+    """
+    # Enum members
+    SOLID = "SOLID"
+    LIQUID = "LIQUID"
+    GAS = "GAS"
+    PLASMA = "PLASMA"
+    BOSE_EINSTEIN_CONDENSATE = "BOSE_EINSTEIN_CONDENSATE"
+    FERMIONIC_CONDENSATE = "FERMIONIC_CONDENSATE"
+    SUPERCRITICAL_FLUID = "SUPERCRITICAL_FLUID"
+    SUPERFLUID = "SUPERFLUID"
+    SUPERSOLID = "SUPERSOLID"
+    QUARK_GLUON_PLASMA = "QUARK_GLUON_PLASMA"
+
+# Set metadata after class creation
+StateOfMatterEnum._metadata = {
+    "SOLID": {'description': 'A state of matter where particles are closely packed together with fixed positions', 'meaning': 'AFO:AFQ_0000112'},
+    "LIQUID": {'description': 'A nearly incompressible fluid that conforms to the shape of its container', 'meaning': 'AFO:AFQ_0000113'},
+    "GAS": {'description': 'A compressible fluid that expands to fill its container', 'meaning': 'AFO:AFQ_0000114'},
+    "PLASMA": {'description': 'An ionized gas with freely moving charged particles', 'meaning': 'AFO:AFQ_0000115'},
+    "BOSE_EINSTEIN_CONDENSATE": {'description': 'A state of matter formed at extremely low temperatures where particles occupy the same quantum state'},
+    "FERMIONIC_CONDENSATE": {'description': 'A superfluid phase formed by fermionic particles at extremely low temperatures'},
+    "SUPERCRITICAL_FLUID": {'description': 'A state where distinct liquid and gas phases do not exist'},
+    "SUPERFLUID": {'description': 'A phase of matter with zero viscosity'},
+    "SUPERSOLID": {'description': 'A spatially ordered material with superfluid properties'},
+    "QUARK_GLUON_PLASMA": {'description': 'An extremely hot phase where quarks and gluons are not confined'},
+}
+
+__all__ = [
+    "StateOfMatterEnum",
+]

valuesets/enums/social/__init__.py

@@ -0,0 +1 @@
+"""Auto-generated package."""

valuesets/enums/social/person_status.py

@@ -0,0 +1,29 @@
+"""
+
+Generated from: social/person_status.yaml
+"""
+
+from __future__ import annotations
+
+from typing import Dict, Any, Optional
+from valuesets.generators.rich_enum import RichEnum
+
+class PersonStatusEnum(RichEnum):
+    """
+    Vital status of a person (living or deceased)
+    """
+    # Enum members
+    ALIVE = "ALIVE"
+    DEAD = "DEAD"
+    UNKNOWN = "UNKNOWN"
+
+# Set metadata after class creation
+PersonStatusEnum._metadata = {
+    "ALIVE": {'description': 'The person is living', 'meaning': 'PATO:0001421'},
+    "DEAD": {'description': 'The person is deceased', 'meaning': 'PATO:0001422'},
+    "UNKNOWN": {'description': 'The vital status is not known', 'meaning': 'NCIT:C17998'},
+}
+
+__all__ = [
+    "PersonStatusEnum",
+]

valuesets/enums/spatial/__init__.py

@@ -0,0 +1 @@
+"""Auto-generated package."""