valuesets 0.3.1__py3-none-any.whl

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  1. valuesets/__init__.py +7 -0
  2. valuesets/_version.py +8 -0
  3. valuesets/datamodel/valuesets.py +13796 -0
  4. valuesets/datamodel/valuesets_dataclass.py +24503 -0
  5. valuesets/datamodel/valuesets_pydantic.py +13796 -0
  6. valuesets/enums/__init__.py +590 -0
  7. valuesets/enums/academic/__init__.py +1 -0
  8. valuesets/enums/academic/research.py +559 -0
  9. valuesets/enums/analytical_chemistry/__init__.py +1 -0
  10. valuesets/enums/analytical_chemistry/mass_spectrometry.py +198 -0
  11. valuesets/enums/bio/__init__.py +1 -0
  12. valuesets/enums/bio/biological_colors.py +238 -0
  13. valuesets/enums/bio/cell_cycle.py +180 -0
  14. valuesets/enums/bio/currency_chemicals.py +52 -0
  15. valuesets/enums/bio/developmental_stages.py +103 -0
  16. valuesets/enums/bio/genome_features.py +182 -0
  17. valuesets/enums/bio/genomics.py +91 -0
  18. valuesets/enums/bio/go_aspect.py +32 -0
  19. valuesets/enums/bio/go_causality.py +58 -0
  20. valuesets/enums/bio/go_evidence.py +129 -0
  21. valuesets/enums/bio/human_developmental_stages.py +62 -0
  22. valuesets/enums/bio/insdc_geographic_locations.py +591 -0
  23. valuesets/enums/bio/insdc_missing_values.py +49 -0
  24. valuesets/enums/bio/lipid_categories.py +67 -0
  25. valuesets/enums/bio/mouse_developmental_stages.py +62 -0
  26. valuesets/enums/bio/plant_biology.py +86 -0
  27. valuesets/enums/bio/plant_developmental_stages.py +54 -0
  28. valuesets/enums/bio/plant_sex.py +81 -0
  29. valuesets/enums/bio/protein_evidence.py +61 -0
  30. valuesets/enums/bio/proteomics_standards.py +123 -0
  31. valuesets/enums/bio/psi_mi.py +306 -0
  32. valuesets/enums/bio/relationship_to_oxygen.py +37 -0
  33. valuesets/enums/bio/sequence_alphabets.py +449 -0
  34. valuesets/enums/bio/sequence_chemistry.py +357 -0
  35. valuesets/enums/bio/sequencing_platforms.py +302 -0
  36. valuesets/enums/bio/structural_biology.py +320 -0
  37. valuesets/enums/bio/taxonomy.py +238 -0
  38. valuesets/enums/bio/trophic_levels.py +85 -0
  39. valuesets/enums/bio/uniprot_species.py +344 -0
  40. valuesets/enums/bio/viral_genome_types.py +47 -0
  41. valuesets/enums/bioprocessing/__init__.py +1 -0
  42. valuesets/enums/bioprocessing/scale_up.py +249 -0
  43. valuesets/enums/business/__init__.py +1 -0
  44. valuesets/enums/business/human_resources.py +275 -0
  45. valuesets/enums/business/industry_classifications.py +181 -0
  46. valuesets/enums/business/management_operations.py +228 -0
  47. valuesets/enums/business/organizational_structures.py +236 -0
  48. valuesets/enums/business/quality_management.py +181 -0
  49. valuesets/enums/business/supply_chain.py +232 -0
  50. valuesets/enums/chemistry/__init__.py +1 -0
  51. valuesets/enums/chemistry/chemical_entities.py +315 -0
  52. valuesets/enums/chemistry/reaction_directionality.py +65 -0
  53. valuesets/enums/chemistry/reactions.py +256 -0
  54. valuesets/enums/clinical/__init__.py +1 -0
  55. valuesets/enums/clinical/nih_demographics.py +177 -0
  56. valuesets/enums/clinical/phenopackets.py +254 -0
  57. valuesets/enums/common_value_sets.py +8791 -0
  58. valuesets/enums/computing/__init__.py +1 -0
  59. valuesets/enums/computing/file_formats.py +294 -0
  60. valuesets/enums/computing/maturity_levels.py +196 -0
  61. valuesets/enums/computing/mime_types.py +227 -0
  62. valuesets/enums/confidence_levels.py +168 -0
  63. valuesets/enums/contributor.py +30 -0
  64. valuesets/enums/core.py +42 -0
  65. valuesets/enums/data/__init__.py +1 -0
  66. valuesets/enums/data/data_absent_reason.py +53 -0
  67. valuesets/enums/data_science/__init__.py +1 -0
  68. valuesets/enums/data_science/binary_classification.py +87 -0
  69. valuesets/enums/data_science/emotion_classification.py +66 -0
  70. valuesets/enums/data_science/priority_severity.py +73 -0
  71. valuesets/enums/data_science/quality_control.py +46 -0
  72. valuesets/enums/data_science/sentiment_analysis.py +50 -0
  73. valuesets/enums/data_science/text_classification.py +97 -0
  74. valuesets/enums/demographics.py +206 -0
  75. valuesets/enums/ecological_interactions.py +151 -0
  76. valuesets/enums/energy/__init__.py +1 -0
  77. valuesets/enums/energy/energy.py +343 -0
  78. valuesets/enums/energy/fossil_fuels.py +29 -0
  79. valuesets/enums/energy/nuclear/__init__.py +1 -0
  80. valuesets/enums/energy/nuclear/nuclear_facilities.py +195 -0
  81. valuesets/enums/energy/nuclear/nuclear_fuel_cycle.py +96 -0
  82. valuesets/enums/energy/nuclear/nuclear_fuels.py +175 -0
  83. valuesets/enums/energy/nuclear/nuclear_operations.py +191 -0
  84. valuesets/enums/energy/nuclear/nuclear_regulatory.py +188 -0
  85. valuesets/enums/energy/nuclear/nuclear_safety.py +164 -0
  86. valuesets/enums/energy/nuclear/nuclear_waste.py +158 -0
  87. valuesets/enums/energy/nuclear/reactor_types.py +163 -0
  88. valuesets/enums/environmental_health/__init__.py +1 -0
  89. valuesets/enums/environmental_health/exposures.py +265 -0
  90. valuesets/enums/geography/__init__.py +1 -0
  91. valuesets/enums/geography/geographic_codes.py +741 -0
  92. valuesets/enums/health/__init__.py +12 -0
  93. valuesets/enums/health/vaccination.py +98 -0
  94. valuesets/enums/health.py +36 -0
  95. valuesets/enums/health_base.py +36 -0
  96. valuesets/enums/healthcare.py +45 -0
  97. valuesets/enums/industry/__init__.py +1 -0
  98. valuesets/enums/industry/extractive_industry.py +94 -0
  99. valuesets/enums/industry/mining.py +388 -0
  100. valuesets/enums/industry/safety_colors.py +201 -0
  101. valuesets/enums/investigation.py +27 -0
  102. valuesets/enums/materials_science/__init__.py +1 -0
  103. valuesets/enums/materials_science/characterization_methods.py +112 -0
  104. valuesets/enums/materials_science/crystal_structures.py +76 -0
  105. valuesets/enums/materials_science/material_properties.py +119 -0
  106. valuesets/enums/materials_science/material_types.py +104 -0
  107. valuesets/enums/materials_science/pigments_dyes.py +198 -0
  108. valuesets/enums/materials_science/synthesis_methods.py +109 -0
  109. valuesets/enums/medical/__init__.py +1 -0
  110. valuesets/enums/medical/clinical.py +277 -0
  111. valuesets/enums/medical/neuroimaging.py +119 -0
  112. valuesets/enums/mining_processing.py +302 -0
  113. valuesets/enums/physics/__init__.py +1 -0
  114. valuesets/enums/physics/states_of_matter.py +46 -0
  115. valuesets/enums/social/__init__.py +1 -0
  116. valuesets/enums/social/person_status.py +29 -0
  117. valuesets/enums/spatial/__init__.py +1 -0
  118. valuesets/enums/spatial/spatial_qualifiers.py +246 -0
  119. valuesets/enums/statistics/__init__.py +5 -0
  120. valuesets/enums/statistics/prediction_outcomes.py +31 -0
  121. valuesets/enums/statistics.py +31 -0
  122. valuesets/enums/time/__init__.py +1 -0
  123. valuesets/enums/time/temporal.py +254 -0
  124. valuesets/enums/units/__init__.py +1 -0
  125. valuesets/enums/units/measurements.py +310 -0
  126. valuesets/enums/visual/__init__.py +1 -0
  127. valuesets/enums/visual/colors.py +376 -0
  128. valuesets/generators/__init__.py +19 -0
  129. valuesets/generators/auto_slot_injector.py +280 -0
  130. valuesets/generators/enhanced_pydantic_generator.py +100 -0
  131. valuesets/generators/enum_slot_generator.py +201 -0
  132. valuesets/generators/modular_rich_generator.py +353 -0
  133. valuesets/generators/prefix_standardizer.py +198 -0
  134. valuesets/generators/rich_enum.py +127 -0
  135. valuesets/generators/rich_pydantic_generator.py +310 -0
  136. valuesets/generators/smart_slot_syncer.py +428 -0
  137. valuesets/generators/sssom_generator.py +394 -0
  138. valuesets/merged/merged_hierarchy.yaml +21649 -0
  139. valuesets/schema/README.md +3 -0
  140. valuesets/schema/academic/research.yaml +911 -0
  141. valuesets/schema/analytical_chemistry/mass_spectrometry.yaml +206 -0
  142. valuesets/schema/bio/bio_entities.yaml +364 -0
  143. valuesets/schema/bio/biological_colors.yaml +434 -0
  144. valuesets/schema/bio/cell_cycle.yaml +309 -0
  145. valuesets/schema/bio/currency_chemicals.yaml +70 -0
  146. valuesets/schema/bio/developmental_stages.yaml +226 -0
  147. valuesets/schema/bio/genome_features.yaml +342 -0
  148. valuesets/schema/bio/genomics.yaml +101 -0
  149. valuesets/schema/bio/go_aspect.yaml +39 -0
  150. valuesets/schema/bio/go_causality.yaml +119 -0
  151. valuesets/schema/bio/go_evidence.yaml +215 -0
  152. valuesets/schema/bio/insdc_geographic_locations.yaml +911 -0
  153. valuesets/schema/bio/insdc_missing_values.yaml +85 -0
  154. valuesets/schema/bio/lipid_categories.yaml +72 -0
  155. valuesets/schema/bio/plant_biology.yaml +125 -0
  156. valuesets/schema/bio/plant_developmental_stages.yaml +77 -0
  157. valuesets/schema/bio/plant_sex.yaml +108 -0
  158. valuesets/schema/bio/protein_evidence.yaml +63 -0
  159. valuesets/schema/bio/proteomics_standards.yaml +116 -0
  160. valuesets/schema/bio/psi_mi.yaml +400 -0
  161. valuesets/schema/bio/relationship_to_oxygen.yaml +46 -0
  162. valuesets/schema/bio/sequence_alphabets.yaml +1168 -0
  163. valuesets/schema/bio/sequence_chemistry.yaml +477 -0
  164. valuesets/schema/bio/sequencing_platforms.yaml +515 -0
  165. valuesets/schema/bio/structural_biology.yaml +428 -0
  166. valuesets/schema/bio/taxonomy.yaml +453 -0
  167. valuesets/schema/bio/trophic_levels.yaml +118 -0
  168. valuesets/schema/bio/uniprot_species.yaml +1209 -0
  169. valuesets/schema/bio/viral_genome_types.yaml +99 -0
  170. valuesets/schema/bioprocessing/scale_up.yaml +458 -0
  171. valuesets/schema/business/human_resources.yaml +752 -0
  172. valuesets/schema/business/industry_classifications.yaml +448 -0
  173. valuesets/schema/business/management_operations.yaml +602 -0
  174. valuesets/schema/business/organizational_structures.yaml +645 -0
  175. valuesets/schema/business/quality_management.yaml +502 -0
  176. valuesets/schema/business/supply_chain.yaml +688 -0
  177. valuesets/schema/chemistry/chemical_entities.yaml +639 -0
  178. valuesets/schema/chemistry/reaction_directionality.yaml +60 -0
  179. valuesets/schema/chemistry/reactions.yaml +442 -0
  180. valuesets/schema/clinical/nih_demographics.yaml +285 -0
  181. valuesets/schema/clinical/phenopackets.yaml +429 -0
  182. valuesets/schema/computing/file_formats.yaml +631 -0
  183. valuesets/schema/computing/maturity_levels.yaml +229 -0
  184. valuesets/schema/computing/mime_types.yaml +266 -0
  185. valuesets/schema/confidence_levels.yaml +206 -0
  186. valuesets/schema/contributor.yaml +30 -0
  187. valuesets/schema/core.yaml +55 -0
  188. valuesets/schema/data/data_absent_reason.yaml +82 -0
  189. valuesets/schema/data_science/binary_classification.yaml +125 -0
  190. valuesets/schema/data_science/emotion_classification.yaml +109 -0
  191. valuesets/schema/data_science/priority_severity.yaml +122 -0
  192. valuesets/schema/data_science/quality_control.yaml +68 -0
  193. valuesets/schema/data_science/sentiment_analysis.yaml +81 -0
  194. valuesets/schema/data_science/text_classification.yaml +135 -0
  195. valuesets/schema/demographics.yaml +238 -0
  196. valuesets/schema/ecological_interactions.yaml +298 -0
  197. valuesets/schema/energy/energy.yaml +595 -0
  198. valuesets/schema/energy/fossil_fuels.yaml +28 -0
  199. valuesets/schema/energy/nuclear/nuclear_facilities.yaml +463 -0
  200. valuesets/schema/energy/nuclear/nuclear_fuel_cycle.yaml +82 -0
  201. valuesets/schema/energy/nuclear/nuclear_fuels.yaml +421 -0
  202. valuesets/schema/energy/nuclear/nuclear_operations.yaml +480 -0
  203. valuesets/schema/energy/nuclear/nuclear_regulatory.yaml +200 -0
  204. valuesets/schema/energy/nuclear/nuclear_safety.yaml +352 -0
  205. valuesets/schema/energy/nuclear/nuclear_waste.yaml +332 -0
  206. valuesets/schema/energy/nuclear/reactor_types.yaml +394 -0
  207. valuesets/schema/environmental_health/exposures.yaml +355 -0
  208. valuesets/schema/generated_slots.yaml +1828 -0
  209. valuesets/schema/geography/geographic_codes.yaml +1018 -0
  210. valuesets/schema/health/vaccination.yaml +102 -0
  211. valuesets/schema/health.yaml +38 -0
  212. valuesets/schema/healthcare.yaml +53 -0
  213. valuesets/schema/industry/extractive_industry.yaml +89 -0
  214. valuesets/schema/industry/mining.yaml +888 -0
  215. valuesets/schema/industry/safety_colors.yaml +375 -0
  216. valuesets/schema/investigation.yaml +64 -0
  217. valuesets/schema/materials_science/characterization_methods.yaml +193 -0
  218. valuesets/schema/materials_science/crystal_structures.yaml +138 -0
  219. valuesets/schema/materials_science/material_properties.yaml +135 -0
  220. valuesets/schema/materials_science/material_types.yaml +151 -0
  221. valuesets/schema/materials_science/pigments_dyes.yaml +465 -0
  222. valuesets/schema/materials_science/synthesis_methods.yaml +186 -0
  223. valuesets/schema/medical/clinical.yaml +610 -0
  224. valuesets/schema/medical/neuroimaging.yaml +325 -0
  225. valuesets/schema/mining_processing.yaml +295 -0
  226. valuesets/schema/physics/states_of_matter.yaml +46 -0
  227. valuesets/schema/slot_mixins.yaml +143 -0
  228. valuesets/schema/social/person_status.yaml +28 -0
  229. valuesets/schema/spatial/spatial_qualifiers.yaml +466 -0
  230. valuesets/schema/statistics/prediction_outcomes.yaml +26 -0
  231. valuesets/schema/statistics.yaml +34 -0
  232. valuesets/schema/time/temporal.yaml +435 -0
  233. valuesets/schema/types.yaml +15 -0
  234. valuesets/schema/units/measurements.yaml +675 -0
  235. valuesets/schema/valuesets.yaml +100 -0
  236. valuesets/schema/visual/colors.yaml +778 -0
  237. valuesets/utils/__init__.py +6 -0
  238. valuesets/utils/comparison.py +102 -0
  239. valuesets/utils/expand_dynamic_enums.py +414 -0
  240. valuesets/utils/mapping_utils.py +236 -0
  241. valuesets/validators/__init__.py +11 -0
  242. valuesets/validators/enum_evaluator.py +669 -0
  243. valuesets/validators/oak_config.yaml +70 -0
  244. valuesets/validators/validate_with_ols.py +241 -0
  245. valuesets-0.3.1.dist-info/METADATA +395 -0
  246. valuesets-0.3.1.dist-info/RECORD +248 -0
  247. valuesets-0.3.1.dist-info/WHEEL +4 -0
  248. valuesets-0.3.1.dist-info/licenses/LICENSE +201 -0
@@ -0,0 +1,66 @@
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+ """
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+
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+ Generated from: data_science/emotion_classification.yaml
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+ """
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+
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+ from __future__ import annotations
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+
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+ from typing import Dict, Any, Optional
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+ from valuesets.generators.rich_enum import RichEnum
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+
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+ class BasicEmotionEnum(RichEnum):
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+ """
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+ Ekman's six basic emotions commonly used in emotion recognition
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+ """
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+ # Enum members
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+ ANGER = "ANGER"
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+ DISGUST = "DISGUST"
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+ FEAR = "FEAR"
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+ HAPPINESS = "HAPPINESS"
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+ SADNESS = "SADNESS"
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+ SURPRISE = "SURPRISE"
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+
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+ # Set metadata after class creation
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+ BasicEmotionEnum._metadata = {
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+ "ANGER": {'description': 'Feeling of displeasure or hostility', 'meaning': 'MFOEM:000009', 'aliases': ['angry', 'mad']},
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+ "DISGUST": {'description': 'Feeling of revulsion or strong disapproval', 'meaning': 'MFOEM:000019', 'aliases': ['disgusted', 'repulsed']},
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+ "FEAR": {'description': 'Feeling of anxiety or apprehension', 'meaning': 'MFOEM:000026', 'aliases': ['afraid', 'scared']},
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+ "HAPPINESS": {'description': 'Feeling of pleasure or contentment', 'meaning': 'MFOEM:000042', 'aliases': ['happy', 'joy', 'joyful']},
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+ "SADNESS": {'description': 'Feeling of sorrow or unhappiness', 'meaning': 'MFOEM:000056', 'aliases': ['sad', 'sorrow']},
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+ "SURPRISE": {'description': 'Feeling of mild astonishment or shock', 'meaning': 'MFOEM:000032', 'aliases': ['surprised', 'shocked']},
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+ }
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+
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+ class ExtendedEmotionEnum(RichEnum):
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+ """
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+ Extended emotion set including complex emotions
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+ """
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+ # Enum members
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+ ANGER = "ANGER"
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+ DISGUST = "DISGUST"
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+ FEAR = "FEAR"
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+ HAPPINESS = "HAPPINESS"
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+ SADNESS = "SADNESS"
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+ SURPRISE = "SURPRISE"
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+ CONTEMPT = "CONTEMPT"
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+ ANTICIPATION = "ANTICIPATION"
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+ TRUST = "TRUST"
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+ LOVE = "LOVE"
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+
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+ # Set metadata after class creation
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+ ExtendedEmotionEnum._metadata = {
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+ "ANGER": {'description': 'Feeling of displeasure or hostility', 'meaning': 'MFOEM:000009'},
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+ "DISGUST": {'description': 'Feeling of revulsion', 'meaning': 'MFOEM:000019'},
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+ "FEAR": {'description': 'Feeling of anxiety', 'meaning': 'MFOEM:000026'},
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+ "HAPPINESS": {'description': 'Feeling of pleasure', 'meaning': 'MFOEM:000042'},
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+ "SADNESS": {'description': 'Feeling of sorrow', 'meaning': 'MFOEM:000056'},
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+ "SURPRISE": {'description': 'Feeling of astonishment', 'meaning': 'MFOEM:000032'},
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+ "CONTEMPT": {'description': 'Feeling that something is worthless', 'meaning': 'MFOEM:000018'},
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+ "ANTICIPATION": {'description': 'Feeling of excitement about something that will happen', 'meaning': 'MFOEM:000175', 'aliases': ['expectation', 'expectant']},
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+ "TRUST": {'description': 'Feeling of confidence in someone or something', 'meaning': 'MFOEM:000224'},
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+ "LOVE": {'description': 'Feeling of deep affection', 'meaning': 'MFOEM:000048'},
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+ }
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+
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+ __all__ = [
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+ "BasicEmotionEnum",
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+ "ExtendedEmotionEnum",
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+ ]
@@ -0,0 +1,73 @@
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+ """
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+
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+ Generated from: data_science/priority_severity.yaml
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+ """
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+
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+ from __future__ import annotations
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+
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+ from typing import Dict, Any, Optional
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+ from valuesets.generators.rich_enum import RichEnum
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+
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+ class PriorityLevelEnum(RichEnum):
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+ """
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+ Standard priority levels for task/issue classification
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+ """
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+ # Enum members
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+ CRITICAL = "CRITICAL"
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+ HIGH = "HIGH"
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+ MEDIUM = "MEDIUM"
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+ LOW = "LOW"
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+ TRIVIAL = "TRIVIAL"
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+
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+ # Set metadata after class creation
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+ PriorityLevelEnum._metadata = {
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+ "CRITICAL": {'description': 'Highest priority, requires immediate attention', 'aliases': ['P0', 'urgent', 'blocker', '1']},
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+ "HIGH": {'description': 'High priority, should be addressed soon', 'aliases': ['P1', 'important', '2']},
26
+ "MEDIUM": {'description': 'Medium priority, normal workflow', 'aliases': ['P2', 'normal', '3']},
27
+ "LOW": {'description': 'Low priority, can be deferred', 'aliases': ['P3', 'minor', '4']},
28
+ "TRIVIAL": {'description': 'Lowest priority, nice to have', 'aliases': ['P4', 'cosmetic', '5']},
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+ }
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+
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+ class SeverityLevelEnum(RichEnum):
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+ """
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+ Severity levels for incident/bug classification
34
+ """
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+ # Enum members
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+ CRITICAL = "CRITICAL"
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+ MAJOR = "MAJOR"
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+ MINOR = "MINOR"
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+ TRIVIAL = "TRIVIAL"
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+
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+ # Set metadata after class creation
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+ SeverityLevelEnum._metadata = {
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+ "CRITICAL": {'description': 'System is unusable, data loss possible', 'aliases': ['S1', 'blocker', 'showstopper']},
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+ "MAJOR": {'description': 'Major functionality impaired', 'aliases': ['S2', 'severe', 'high']},
45
+ "MINOR": {'description': 'Minor functionality impaired', 'aliases': ['S3', 'moderate', 'medium']},
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+ "TRIVIAL": {'description': 'Cosmetic issue, minimal impact', 'aliases': ['S4', 'cosmetic', 'low']},
47
+ }
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+
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+ class ConfidenceLevelEnum(RichEnum):
50
+ """
51
+ Confidence levels for predictions and classifications
52
+ """
53
+ # Enum members
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+ VERY_HIGH = "VERY_HIGH"
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+ HIGH = "HIGH"
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+ MEDIUM = "MEDIUM"
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+ LOW = "LOW"
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+ VERY_LOW = "VERY_LOW"
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+
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+ # Set metadata after class creation
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+ ConfidenceLevelEnum._metadata = {
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+ "VERY_HIGH": {'description': 'Very high confidence (>95%)', 'aliases': ['certain', '5']},
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+ "HIGH": {'description': 'High confidence (80-95%)', 'aliases': ['confident', '4']},
64
+ "MEDIUM": {'description': 'Medium confidence (60-80%)', 'aliases': ['moderate', '3']},
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+ "LOW": {'description': 'Low confidence (40-60%)', 'aliases': ['uncertain', '2']},
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+ "VERY_LOW": {'description': 'Very low confidence (<40%)', 'aliases': ['guess', '1']},
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+ }
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+
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+ __all__ = [
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+ "PriorityLevelEnum",
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+ "SeverityLevelEnum",
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+ "ConfidenceLevelEnum",
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+ ]
@@ -0,0 +1,46 @@
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+ """
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+
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+ Generated from: data_science/quality_control.yaml
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+ """
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+
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+ from __future__ import annotations
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+
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+ from typing import Dict, Any, Optional
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+ from valuesets.generators.rich_enum import RichEnum
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+
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+ class QualityControlEnum(RichEnum):
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+ """
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+ Quality control classification labels
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+ """
15
+ # Enum members
16
+ PASS = "PASS"
17
+ FAIL = "FAIL"
18
+
19
+ # Set metadata after class creation
20
+ QualityControlEnum._metadata = {
21
+ "PASS": {'description': 'Item meets quality standards', 'meaning': 'NCIT:C81275', 'aliases': ['passed', 'acceptable', 'ok', '1']},
22
+ "FAIL": {'description': 'Item does not meet quality standards', 'meaning': 'NCIT:C44281', 'aliases': ['failed', 'reject', 'defective', '0']},
23
+ }
24
+
25
+ class DefectClassificationEnum(RichEnum):
26
+ """
27
+ Manufacturing defect classification
28
+ """
29
+ # Enum members
30
+ NO_DEFECT = "NO_DEFECT"
31
+ MINOR_DEFECT = "MINOR_DEFECT"
32
+ MAJOR_DEFECT = "MAJOR_DEFECT"
33
+ CRITICAL_DEFECT = "CRITICAL_DEFECT"
34
+
35
+ # Set metadata after class creation
36
+ DefectClassificationEnum._metadata = {
37
+ "NO_DEFECT": {'description': 'No defect detected', 'meaning': 'NCIT:C14165', 'aliases': ['good', 'normal', '0']},
38
+ "MINOR_DEFECT": {'description': "Minor defect that doesn't affect functionality", 'aliases': ['minor', 'cosmetic', '1']},
39
+ "MAJOR_DEFECT": {'description': 'Major defect affecting functionality', 'aliases': ['major', 'functional', '2']},
40
+ "CRITICAL_DEFECT": {'description': 'Critical defect rendering item unusable or unsafe', 'aliases': ['critical', 'severe', '3']},
41
+ }
42
+
43
+ __all__ = [
44
+ "QualityControlEnum",
45
+ "DefectClassificationEnum",
46
+ ]
@@ -0,0 +1,50 @@
1
+ """
2
+
3
+ Generated from: data_science/sentiment_analysis.yaml
4
+ """
5
+
6
+ from __future__ import annotations
7
+
8
+ from typing import Dict, Any, Optional
9
+ from valuesets.generators.rich_enum import RichEnum
10
+
11
+ class SentimentClassificationEnum(RichEnum):
12
+ """
13
+ Standard labels for sentiment analysis classification tasks
14
+ """
15
+ # Enum members
16
+ POSITIVE = "POSITIVE"
17
+ NEGATIVE = "NEGATIVE"
18
+ NEUTRAL = "NEUTRAL"
19
+
20
+ # Set metadata after class creation
21
+ SentimentClassificationEnum._metadata = {
22
+ "POSITIVE": {'description': 'Positive sentiment or opinion', 'meaning': 'NCIT:C38758', 'aliases': ['pos', '1', '+']},
23
+ "NEGATIVE": {'description': 'Negative sentiment or opinion', 'meaning': 'NCIT:C35681', 'aliases': ['neg', '0', '-']},
24
+ "NEUTRAL": {'description': 'Neutral sentiment, neither positive nor negative', 'meaning': 'NCIT:C14165', 'aliases': ['neu', '2']},
25
+ }
26
+
27
+ class FineSentimentClassificationEnum(RichEnum):
28
+ """
29
+ Fine-grained sentiment analysis labels with intensity levels
30
+ """
31
+ # Enum members
32
+ VERY_POSITIVE = "VERY_POSITIVE"
33
+ POSITIVE = "POSITIVE"
34
+ NEUTRAL = "NEUTRAL"
35
+ NEGATIVE = "NEGATIVE"
36
+ VERY_NEGATIVE = "VERY_NEGATIVE"
37
+
38
+ # Set metadata after class creation
39
+ FineSentimentClassificationEnum._metadata = {
40
+ "VERY_POSITIVE": {'description': 'Strongly positive sentiment', 'meaning': 'NCIT:C38758', 'aliases': ['5', '++']},
41
+ "POSITIVE": {'description': 'Positive sentiment', 'meaning': 'NCIT:C38758', 'aliases': ['4', '+']},
42
+ "NEUTRAL": {'description': 'Neutral sentiment', 'meaning': 'NCIT:C14165', 'aliases': ['3', '0']},
43
+ "NEGATIVE": {'description': 'Negative sentiment', 'meaning': 'NCIT:C35681', 'aliases': ['2', '-']},
44
+ "VERY_NEGATIVE": {'description': 'Strongly negative sentiment', 'meaning': 'NCIT:C35681', 'aliases': ['1', '--']},
45
+ }
46
+
47
+ __all__ = [
48
+ "SentimentClassificationEnum",
49
+ "FineSentimentClassificationEnum",
50
+ ]
@@ -0,0 +1,97 @@
1
+ """
2
+
3
+ Generated from: data_science/text_classification.yaml
4
+ """
5
+
6
+ from __future__ import annotations
7
+
8
+ from typing import Dict, Any, Optional
9
+ from valuesets.generators.rich_enum import RichEnum
10
+
11
+ class NewsTopicCategoryEnum(RichEnum):
12
+ """
13
+ Common news article topic categories
14
+ """
15
+ # Enum members
16
+ POLITICS = "POLITICS"
17
+ BUSINESS = "BUSINESS"
18
+ TECHNOLOGY = "TECHNOLOGY"
19
+ SPORTS = "SPORTS"
20
+ ENTERTAINMENT = "ENTERTAINMENT"
21
+ SCIENCE = "SCIENCE"
22
+ HEALTH = "HEALTH"
23
+ WORLD = "WORLD"
24
+ LOCAL = "LOCAL"
25
+
26
+ # Set metadata after class creation
27
+ NewsTopicCategoryEnum._metadata = {
28
+ "POLITICS": {'description': 'Political news and government affairs'},
29
+ "BUSINESS": {'description': 'Business, finance, and economic news', 'aliases': ['finance', 'economy']},
30
+ "TECHNOLOGY": {'description': 'Technology and computing news', 'aliases': ['tech', 'IT']},
31
+ "SPORTS": {'description': 'Sports news and events'},
32
+ "ENTERTAINMENT": {'description': 'Entertainment and celebrity news', 'aliases': ['showbiz']},
33
+ "SCIENCE": {'description': 'Scientific discoveries and research'},
34
+ "HEALTH": {'description': 'Health, medicine, and wellness news', 'aliases': ['medical']},
35
+ "WORLD": {'description': 'International news and events', 'aliases': ['international', 'global']},
36
+ "LOCAL": {'description': 'Local and regional news', 'aliases': ['regional']},
37
+ }
38
+
39
+ class ToxicityClassificationEnum(RichEnum):
40
+ """
41
+ Text toxicity classification labels
42
+ """
43
+ # Enum members
44
+ NON_TOXIC = "NON_TOXIC"
45
+ TOXIC = "TOXIC"
46
+ SEVERE_TOXIC = "SEVERE_TOXIC"
47
+ OBSCENE = "OBSCENE"
48
+ THREAT = "THREAT"
49
+ INSULT = "INSULT"
50
+ IDENTITY_HATE = "IDENTITY_HATE"
51
+
52
+ # Set metadata after class creation
53
+ ToxicityClassificationEnum._metadata = {
54
+ "NON_TOXIC": {'description': 'Text is appropriate and non-harmful', 'meaning': 'SIO:001010', 'aliases': ['safe', 'clean', '0']},
55
+ "TOXIC": {'description': 'Text contains harmful or inappropriate content', 'aliases': ['harmful', 'inappropriate', '1']},
56
+ "SEVERE_TOXIC": {'description': 'Text contains severely harmful content'},
57
+ "OBSCENE": {'description': 'Text contains obscene content'},
58
+ "THREAT": {'description': 'Text contains threatening content'},
59
+ "INSULT": {'description': 'Text contains insulting content'},
60
+ "IDENTITY_HATE": {'description': 'Text contains identity-based hate'},
61
+ }
62
+
63
+ class IntentClassificationEnum(RichEnum):
64
+ """
65
+ Common chatbot/NLU intent categories
66
+ """
67
+ # Enum members
68
+ GREETING = "GREETING"
69
+ GOODBYE = "GOODBYE"
70
+ THANKS = "THANKS"
71
+ HELP = "HELP"
72
+ INFORMATION = "INFORMATION"
73
+ COMPLAINT = "COMPLAINT"
74
+ FEEDBACK = "FEEDBACK"
75
+ PURCHASE = "PURCHASE"
76
+ CANCEL = "CANCEL"
77
+ REFUND = "REFUND"
78
+
79
+ # Set metadata after class creation
80
+ IntentClassificationEnum._metadata = {
81
+ "GREETING": {'description': 'User greeting or hello'},
82
+ "GOODBYE": {'description': 'User saying goodbye'},
83
+ "THANKS": {'description': 'User expressing gratitude'},
84
+ "HELP": {'description': 'User requesting help or assistance'},
85
+ "INFORMATION": {'description': 'User requesting information'},
86
+ "COMPLAINT": {'description': 'User expressing dissatisfaction'},
87
+ "FEEDBACK": {'description': 'User providing feedback'},
88
+ "PURCHASE": {'description': 'User intent to buy or purchase'},
89
+ "CANCEL": {'description': 'User intent to cancel'},
90
+ "REFUND": {'description': 'User requesting refund'},
91
+ }
92
+
93
+ __all__ = [
94
+ "NewsTopicCategoryEnum",
95
+ "ToxicityClassificationEnum",
96
+ "IntentClassificationEnum",
97
+ ]
@@ -0,0 +1,206 @@
1
+ """
2
+ valuesets-demographics
3
+
4
+ Demographic and social determinant value sets from NIH CDE and HL7 standards
5
+
6
+ Generated from: demographics.yaml
7
+ """
8
+
9
+ from __future__ import annotations
10
+
11
+ from typing import Dict, Any, Optional
12
+ from valuesets.generators.rich_enum import RichEnum
13
+
14
+ class EducationLevel(RichEnum):
15
+ """
16
+ Years of education that a person has completed
17
+ """
18
+ # Enum members
19
+ ELEM = "ELEM"
20
+ SEC = "SEC"
21
+ HS = "HS"
22
+ SCOL = "SCOL"
23
+ ASSOC = "ASSOC"
24
+ BD = "BD"
25
+ PB = "PB"
26
+ GD = "GD"
27
+ POSTG = "POSTG"
28
+
29
+ # Set metadata after class creation
30
+ EducationLevel._metadata = {
31
+ "ELEM": {'description': 'Elementary School', 'meaning': 'HL7:v3-EducationLevel#ELEM'},
32
+ "SEC": {'description': 'Some secondary or high school education', 'meaning': 'HL7:v3-EducationLevel#SEC'},
33
+ "HS": {'description': 'High School or secondary school degree complete', 'meaning': 'HL7:v3-EducationLevel#HS'},
34
+ "SCOL": {'description': 'Some College education', 'meaning': 'HL7:v3-EducationLevel#SCOL'},
35
+ "ASSOC": {'description': "Associate's or technical degree complete", 'meaning': 'HL7:v3-EducationLevel#ASSOC'},
36
+ "BD": {'description': 'College or baccalaureate degree complete', 'meaning': 'HL7:v3-EducationLevel#BD'},
37
+ "PB": {'description': 'Some post-baccalaureate education', 'meaning': 'HL7:v3-EducationLevel#PB'},
38
+ "GD": {'description': 'Graduate or professional Degree complete', 'meaning': 'HL7:v3-EducationLevel#GD'},
39
+ "POSTG": {'description': 'Doctoral or post graduate education', 'meaning': 'HL7:v3-EducationLevel#POSTG'},
40
+ }
41
+
42
+ class MaritalStatus(RichEnum):
43
+ """
44
+ The domestic partnership status of a person
45
+ """
46
+ # Enum members
47
+ ANNULLED = "ANNULLED"
48
+ DIVORCED = "DIVORCED"
49
+ INTERLOCUTORY = "INTERLOCUTORY"
50
+ LEGALLY_SEPARATED = "LEGALLY_SEPARATED"
51
+ MARRIED = "MARRIED"
52
+ COMMON_LAW = "COMMON_LAW"
53
+ POLYGAMOUS = "POLYGAMOUS"
54
+ DOMESTIC_PARTNER = "DOMESTIC_PARTNER"
55
+ UNMARRIED = "UNMARRIED"
56
+ NEVER_MARRIED = "NEVER_MARRIED"
57
+ WIDOWED = "WIDOWED"
58
+ UNKNOWN = "UNKNOWN"
59
+
60
+ # Set metadata after class creation
61
+ MaritalStatus._metadata = {
62
+ "ANNULLED": {'description': 'Marriage contract has been declared null and to not have existed', 'meaning': 'HL7:marital-status#A'},
63
+ "DIVORCED": {'description': 'Marriage contract has been declared dissolved and inactive', 'meaning': 'HL7:marital-status#D'},
64
+ "INTERLOCUTORY": {'description': 'Subject to an Interlocutory Decree', 'meaning': 'HL7:marital-status#I'},
65
+ "LEGALLY_SEPARATED": {'description': 'Legally Separated', 'meaning': 'HL7:marital-status#L'},
66
+ "MARRIED": {'description': 'A current marriage contract is active', 'meaning': 'HL7:marital-status#M'},
67
+ "COMMON_LAW": {'description': "Marriage recognized in some jurisdictions based on parties' agreement", 'meaning': 'HL7:marital-status#C'},
68
+ "POLYGAMOUS": {'description': 'More than 1 current spouse', 'meaning': 'HL7:marital-status#P'},
69
+ "DOMESTIC_PARTNER": {'description': 'Person declares that a domestic partner relationship exists', 'meaning': 'HL7:marital-status#T'},
70
+ "UNMARRIED": {'description': 'Currently not in a marriage contract', 'meaning': 'HL7:marital-status#U'},
71
+ "NEVER_MARRIED": {'description': 'No marriage contract has ever been entered', 'meaning': 'HL7:marital-status#S'},
72
+ "WIDOWED": {'description': 'The spouse has died', 'meaning': 'HL7:marital-status#W'},
73
+ "UNKNOWN": {'description': 'A proper value is applicable, but not known', 'meaning': 'HL7:marital-status#UNK'},
74
+ }
75
+
76
+ class EmploymentStatus(RichEnum):
77
+ """
78
+ Employment status of a person
79
+ """
80
+ # Enum members
81
+ FULL_TIME_EMPLOYED = "FULL_TIME_EMPLOYED"
82
+ PART_TIME_EMPLOYED = "PART_TIME_EMPLOYED"
83
+ UNEMPLOYED = "UNEMPLOYED"
84
+ SELF_EMPLOYED = "SELF_EMPLOYED"
85
+ RETIRED = "RETIRED"
86
+ ACTIVE_MILITARY = "ACTIVE_MILITARY"
87
+ CONTRACT = "CONTRACT"
88
+ PER_DIEM = "PER_DIEM"
89
+ LEAVE_OF_ABSENCE = "LEAVE_OF_ABSENCE"
90
+ OTHER = "OTHER"
91
+ TEMPORARILY_UNEMPLOYED = "TEMPORARILY_UNEMPLOYED"
92
+ UNKNOWN = "UNKNOWN"
93
+
94
+ # Set metadata after class creation
95
+ EmploymentStatus._metadata = {
96
+ "FULL_TIME_EMPLOYED": {'description': 'Full time employed', 'meaning': 'HL7:v2-0066#1'},
97
+ "PART_TIME_EMPLOYED": {'description': 'Part time employed', 'meaning': 'HL7:v2-0066#2'},
98
+ "UNEMPLOYED": {'description': 'Unemployed', 'meaning': 'HL7:v2-0066#3'},
99
+ "SELF_EMPLOYED": {'description': 'Self-employed', 'meaning': 'HL7:v2-0066#4'},
100
+ "RETIRED": {'description': 'Retired', 'meaning': 'HL7:v2-0066#5'},
101
+ "ACTIVE_MILITARY": {'description': 'On active military duty', 'meaning': 'HL7:v2-0066#6'},
102
+ "CONTRACT": {'description': 'Contract, per diem', 'meaning': 'HL7:v2-0066#C'},
103
+ "PER_DIEM": {'description': 'Per Diem', 'meaning': 'HL7:v2-0066#D'},
104
+ "LEAVE_OF_ABSENCE": {'description': 'Leave of absence', 'meaning': 'HL7:v2-0066#L'},
105
+ "OTHER": {'description': 'Other', 'meaning': 'HL7:v2-0066#O'},
106
+ "TEMPORARILY_UNEMPLOYED": {'description': 'Temporarily unemployed', 'meaning': 'HL7:v2-0066#T'},
107
+ "UNKNOWN": {'description': 'Unknown', 'meaning': 'HL7:v2-0066#9'},
108
+ }
109
+
110
+ class HousingStatus(RichEnum):
111
+ """
112
+ Housing status of patients per UDS Plus HRSA standards
113
+ """
114
+ # Enum members
115
+ HOMELESS_SHELTER = "HOMELESS_SHELTER"
116
+ TRANSITIONAL = "TRANSITIONAL"
117
+ DOUBLING_UP = "DOUBLING_UP"
118
+ STREET = "STREET"
119
+ PERMANENT_SUPPORTIVE_HOUSING = "PERMANENT_SUPPORTIVE_HOUSING"
120
+ OTHER = "OTHER"
121
+ UNKNOWN = "UNKNOWN"
122
+
123
+ # Set metadata after class creation
124
+ HousingStatus._metadata = {
125
+ "HOMELESS_SHELTER": {'description': 'Patients who are living in a homeless shelter', 'meaning': 'HL7:udsplus-housing-status-codes#homeless-shelter'},
126
+ "TRANSITIONAL": {'description': 'Patients who do not have a house and are in a transitional state', 'meaning': 'HL7:udsplus-housing-status-codes#transitional'},
127
+ "DOUBLING_UP": {'description': 'Patients who are doubling up with others', 'meaning': 'HL7:udsplus-housing-status-codes#doubling-up'},
128
+ "STREET": {'description': 'Patients who do not have a house and are living on the streets', 'meaning': 'HL7:udsplus-housing-status-codes#street'},
129
+ "PERMANENT_SUPPORTIVE_HOUSING": {'description': 'Patients who are living in a permanent supportive housing', 'meaning': 'HL7:udsplus-housing-status-codes#permanent-supportive-housing'},
130
+ "OTHER": {'description': 'Patients who have other kinds of accommodation', 'meaning': 'HL7:udsplus-housing-status-codes#other'},
131
+ "UNKNOWN": {'description': 'Patients with Unknown accommodation', 'meaning': 'HL7:udsplus-housing-status-codes#unknown'},
132
+ }
133
+
134
+ class GenderIdentity(RichEnum):
135
+ """
136
+ Gender identity codes indicating an individual's personal sense of gender
137
+ """
138
+ # Enum members
139
+ FEMALE = "FEMALE"
140
+ MALE = "MALE"
141
+ NON_BINARY = "NON_BINARY"
142
+ ASKED_DECLINED = "ASKED_DECLINED"
143
+ UNKNOWN = "UNKNOWN"
144
+
145
+ # Set metadata after class creation
146
+ GenderIdentity._metadata = {
147
+ "FEMALE": {'description': 'Identifies as female gender (finding)', 'meaning': 'SNOMED:446141000124107'},
148
+ "MALE": {'description': 'Identifies as male gender (finding)', 'meaning': 'SNOMED:446151000124109'},
149
+ "NON_BINARY": {'description': 'Identifies as gender nonbinary', 'meaning': 'SNOMED:33791000087105'},
150
+ "ASKED_DECLINED": {'description': 'Asked But Declined', 'meaning': 'HL7:asked-declined'},
151
+ "UNKNOWN": {'description': 'A proper value is applicable, but not known', 'meaning': 'HL7:UNK'},
152
+ }
153
+
154
+ class OmbRaceCategory(RichEnum):
155
+ """
156
+ Office of Management and Budget (OMB) race category codes
157
+ """
158
+ # Enum members
159
+ AMERICAN_INDIAN_OR_ALASKA_NATIVE = "AMERICAN_INDIAN_OR_ALASKA_NATIVE"
160
+ ASIAN = "ASIAN"
161
+ BLACK_OR_AFRICAN_AMERICAN = "BLACK_OR_AFRICAN_AMERICAN"
162
+ NATIVE_HAWAIIAN_OR_OTHER_PACIFIC_ISLANDER = "NATIVE_HAWAIIAN_OR_OTHER_PACIFIC_ISLANDER"
163
+ WHITE = "WHITE"
164
+ OTHER_RACE = "OTHER_RACE"
165
+ ASKED_BUT_UNKNOWN = "ASKED_BUT_UNKNOWN"
166
+ UNKNOWN = "UNKNOWN"
167
+
168
+ # Set metadata after class creation
169
+ OmbRaceCategory._metadata = {
170
+ "AMERICAN_INDIAN_OR_ALASKA_NATIVE": {'description': 'American Indian or Alaska Native', 'meaning': 'HL7:CDCREC#1002-5'},
171
+ "ASIAN": {'description': 'Asian', 'meaning': 'HL7:CDCREC#2028-9'},
172
+ "BLACK_OR_AFRICAN_AMERICAN": {'description': 'Black or African American', 'meaning': 'HL7:CDCREC#2054-5'},
173
+ "NATIVE_HAWAIIAN_OR_OTHER_PACIFIC_ISLANDER": {'description': 'Native Hawaiian or Other Pacific Islander', 'meaning': 'HL7:CDCREC#2076-8'},
174
+ "WHITE": {'description': 'White', 'meaning': 'HL7:CDCREC#2106-3'},
175
+ "OTHER_RACE": {'description': 'Other Race (discouraged for statistical analysis)', 'meaning': 'HL7:CDCREC#2131-1'},
176
+ "ASKED_BUT_UNKNOWN": {'description': 'asked but unknown', 'meaning': 'HL7:ASKU'},
177
+ "UNKNOWN": {'description': 'unknown', 'meaning': 'HL7:UNK'},
178
+ }
179
+
180
+ class OmbEthnicityCategory(RichEnum):
181
+ """
182
+ Office of Management and Budget (OMB) ethnicity category codes
183
+ """
184
+ # Enum members
185
+ HISPANIC_OR_LATINO = "HISPANIC_OR_LATINO"
186
+ NOT_HISPANIC_OR_LATINO = "NOT_HISPANIC_OR_LATINO"
187
+ ASKED_BUT_UNKNOWN = "ASKED_BUT_UNKNOWN"
188
+ UNKNOWN = "UNKNOWN"
189
+
190
+ # Set metadata after class creation
191
+ OmbEthnicityCategory._metadata = {
192
+ "HISPANIC_OR_LATINO": {'description': 'Hispanic or Latino', 'meaning': 'HL7:CDCREC#2135-2'},
193
+ "NOT_HISPANIC_OR_LATINO": {'description': 'Not Hispanic or Latino', 'meaning': 'HL7:CDCREC#2186-5'},
194
+ "ASKED_BUT_UNKNOWN": {'description': 'asked but unknown', 'meaning': 'HL7:ASKU'},
195
+ "UNKNOWN": {'description': 'unknown', 'meaning': 'HL7:UNK'},
196
+ }
197
+
198
+ __all__ = [
199
+ "EducationLevel",
200
+ "MaritalStatus",
201
+ "EmploymentStatus",
202
+ "HousingStatus",
203
+ "GenderIdentity",
204
+ "OmbRaceCategory",
205
+ "OmbEthnicityCategory",
206
+ ]