valuesets 0.3.1__py3-none-any.whl

valuesets/schema/contributor.yaml

@@ -0,0 +1,30 @@
+name: contributor
+title: Contributor Value Sets
+description: Value sets related to contributors and their roles
+id: https://w3id.org/common-value-sets/contributor
+imports:
+- linkml:types
+prefixes:
+  CVS: https://w3id.org/common-value-sets/
+  linkml: https://w3id.org/linkml/
+  NCIT: http://purl.obolibrary.org/obo/NCIT_
+  DataCite: https://purl.org/datacite/
+  valuesets: https://w3id.org/valuesets/
+default_prefix: valuesets
+slots:
+  contributor:
+    description: The type of contributor being represented
+    range: ContributorType
+enums:
+  ContributorType:
+    description: The type of contributor being represented.
+    permissible_values:
+      PERSON:
+        description: A person.
+        meaning: NCIT:C25190
+      ORGANIZATION:
+        description: An organization.
+        meaning: NCIT:C41206
+        aliases:
+        - Institution
+default_range: string

valuesets/schema/core.yaml

@@ -0,0 +1,55 @@
+name: comet-core
+title: comet-core
+description: 'Common Observational Model: Core'
+id: https://w3id.org/valuesets/core
+prefixes:
+  valuesets: https://w3id.org/valuesets/
+  linkml: https://w3id.org/linkml/
+  biolink: https://w3id.org/biolink/
+  schema: http://schema.org/
+  BFO: http://purl.obolibrary.org/obo/BFO_
+  IAO: http://purl.obolibrary.org/obo/IAO_
+  fhir: http://hl7.org/fhir/
+  rdfs: http://www.w3.org/2000/01/rdf-schema#
+  rdf: http://www.w3.org/1999/02/22-rdf-syntax-ns#
+  dcterms: http://purl.org/dc/terms/
+  bibo: http://purl.org/ontology/bibo/
+  oboe-core: http://ecoinformatics.org/oboe/oboe.1.0/oboe-core.owl#
+  omopschema: http://example.org/omop/
+  wgs84: http://www.w3.org/2003/01/geo/wgs84_pos#
+  om: http://www.opengis.net/om/2.0
+  prov: http://www.w3.org/ns/prov#
+  OBI: http://purl.obolibrary.org/obo/OBI_
+  ENVO: http://purl.obolibrary.org/obo/ENVO_
+  NCBITaxon: http://purl.obolibrary.org/obo/NCBITaxon_
+  example: http://example.org/
+  _base: http://example.org/
+  mixs: http://w3id.org/mixs/
+  ucum: http://unitsofmeasure.org/
+default_prefix: valuesets
+slots:
+  relative_time:
+    description: The relative time classification
+    range: RelativeTimeEnum
+  presence:
+    description: The presence classification
+    range: PresenceEnum
+enums:
+  RelativeTimeEnum:
+    permissible_values:
+      BEFORE: null
+      AFTER: null
+      AT_SAME_TIME_AS: null
+  PresenceEnum:
+    permissible_values:
+      PRESENT:
+        description: The entity is present
+      ABSENT:
+        description: The entity is absent
+      BELOW_DETECTION_LIMIT:
+        description: The entity is below the detection limit
+      ABOVE_DETECTION_LIMIT:
+        description: The entity is above the detection limit
+license: MIT
+see_also:
+- https://linkml.github.io/comet

valuesets/schema/data/data_absent_reason.yaml

@@ -0,0 +1,82 @@
+name: data_absent_reason
+id: http://terminology.hl7.org/CodeSystem/data-absent-reason#
+prefixes:
+  fhir: http://hl7.org/fhir/
+  fhir_data_absent_reason: http://terminology.hl7.org/CodeSystem/data-absent-reason
+  valuesets: https://w3id.org/valuesets/
+default_prefix: valuesets
+slots:
+  data_absent:
+    description: Used to specify why the normally expected content of the data element is missing
+    range: DataAbsentEnum
+enums:
+  DataAbsentEnum:
+    description: Used to specify why the normally expected content of the data element is missing.
+    permissible_values:
+      unknown:
+        description: The value is expected to exist but is not known.
+        meaning: fhir_data_absent_reason:unknown
+        title: Unknown
+      asked-unknown:
+        description: The source was asked but does not know the value.
+        meaning: fhir_data_absent_reason:asked-unknown
+        is_a: unknown
+        title: Asked But Unknown
+      temp-unknown:
+        description: There is reason to expect (from the workflow) that the value may become known.
+        meaning: fhir_data_absent_reason:temp-unknown
+        is_a: unknown
+        title: Temporarily Unknown
+      not-asked:
+        description: The workflow didn't lead to this value being known.
+        meaning: fhir_data_absent_reason:not-asked
+        is_a: unknown
+        title: Not Asked
+      asked-declined:
+        description: The source was asked but declined to answer.
+        meaning: fhir_data_absent_reason:asked-declined
+        is_a: unknown
+        title: Asked But Declined
+      masked:
+        description: The information is not available due to security, privacy or related reasons.
+        meaning: fhir_data_absent_reason:masked
+        title: Masked
+      not-applicable:
+        description: There is no proper value for this element (e.g. last menstrual period for a male).
+        meaning: fhir_data_absent_reason:not-applicable
+        title: Not Applicable
+      unsupported:
+        description: The source system wasn't capable of supporting this element.
+        meaning: fhir_data_absent_reason:unsupported
+        title: Unsupported
+      as-text:
+        description: The content of the data is represented in the resource narrative.
+        meaning: fhir_data_absent_reason:as-text
+        title: As Text
+      error:
+        description: Some system or workflow process error means that the information is not available.
+        meaning: fhir_data_absent_reason:error
+        title: Error
+      not-a-number:
+        description: The numeric value is undefined or unrepresentable due to a floating point processing error.
+        meaning: fhir_data_absent_reason:not-a-number
+        is_a: error
+        title: Not a Number (NaN)
+      negative-infinity:
+        description: The numeric value is excessively low and unrepresentable due to a floating point processing        error.
+        meaning: fhir_data_absent_reason:negative-infinity
+        is_a: error
+        title: Negative Infinity (NINF)
+      positive-infinity:
+        description: The numeric value is excessively high and unrepresentable due to a floating point processing        error.
+        meaning: fhir_data_absent_reason:positive-infinity
+        is_a: error
+        title: Positive Infinity (PINF)
+      not-performed:
+        description: The value is not available because the observation procedure (test, etc.) was not performed.
+        meaning: fhir_data_absent_reason:not-performed
+        title: Not Performed
+      not-permitted:
+        description: The value is not permitted in this context (e.g. due to profiles, or the base data types).
+        meaning: fhir_data_absent_reason:not-permitted
+        title: Not Permitted

valuesets/schema/data_science/binary_classification.yaml

@@ -0,0 +1,125 @@
+name: binary_classification
+id: https://w3id.org/linkml/valuesets/data_science/binary_classification
+prefixes:
+  # linkml_common: https://w3id.org/linkml-common/
+  STATO: http://purl.obolibrary.org/obo/STATO_
+  NCIT: http://purl.obolibrary.org/obo/NCIT_
+  PATO: http://purl.obolibrary.org/obo/PATO_
+  GSSO: http://purl.obolibrary.org/obo/GSSO_
+  valuesets: https://w3id.org/valuesets/
+default_prefix: valuesets
+slots:
+  binary_classification:
+    description: Generic binary classification labels
+    range: BinaryClassificationEnum
+  spam_classification:
+    description: Standard labels for spam/ham email classification
+    range: SpamClassificationEnum
+  anomaly_detection:
+    description: Labels for anomaly detection tasks
+    range: AnomalyDetectionEnum
+  churn_classification:
+    description: Customer churn prediction labels
+    range: ChurnClassificationEnum
+  fraud_detection:
+    description: Fraud detection classification labels
+    range: FraudDetectionEnum
+enums:
+  BinaryClassificationEnum:
+    description: Generic binary classification labels
+    permissible_values:
+      POSITIVE:
+        description: Positive class
+        title: Positive Finding
+        meaning: NCIT:C38758
+        aliases:
+        - '1'
+        - 'true'
+        - 'yes'
+        - T
+      NEGATIVE:
+        description: Negative class
+        title: Negative Test Result
+        meaning: NCIT:C35681
+        aliases:
+        - '0'
+        - 'false'
+        - 'no'
+        - F
+  SpamClassificationEnum:
+    description: Standard labels for spam/ham email classification
+    permissible_values:
+      SPAM:
+        description: Unwanted or unsolicited message
+        annotations:
+          note: No appropriate ontology term found for spam concept
+        aliases:
+        - junk
+        - '1'
+      HAM:
+        description: Legitimate, wanted message
+        annotations:
+          note: No appropriate ontology term found for ham concept
+        aliases:
+        - not_spam
+        - legitimate
+        - '0'
+  AnomalyDetectionEnum:
+    description: Labels for anomaly detection tasks
+    permissible_values:
+      NORMAL:
+        description: Normal, expected behavior or pattern
+        title: Normal
+        meaning: NCIT:C14165
+        aliases:
+        - inlier
+        - regular
+        - '0'
+      ANOMALY:
+        description: Abnormal, unexpected behavior or pattern
+        title: Anomaly
+        meaning: STATO:0000036
+        aliases:
+        - outlier
+        - abnormal
+        - irregular
+        - '1'
+  ChurnClassificationEnum:
+    description: Customer churn prediction labels
+    permissible_values:
+      RETAINED:
+        description: Customer continues using the service
+        annotations:
+          note: No appropriate ontology term found for customer retention
+        aliases:
+        - active
+        - staying
+        - '0'
+      CHURNED:
+        description: Customer stopped using the service
+        annotations:
+          note: No appropriate ontology term found for customer churn
+        aliases:
+        - lost
+        - inactive
+        - attrited
+        - '1'
+  FraudDetectionEnum:
+    description: Fraud detection classification labels
+    permissible_values:
+      LEGITIMATE:
+        description: Legitimate, non-fraudulent transaction or activity
+        title: Normal
+        meaning: NCIT:C14165
+        aliases:
+        - genuine
+        - valid
+        - '0'
+      FRAUDULENT:
+        description: Fraudulent transaction or activity
+        title: Fraudulently Obtained Product
+        meaning: NCIT:C121839
+        aliases:
+        - fraud
+        - invalid
+        - '1'

valuesets/schema/data_science/emotion_classification.yaml

@@ -0,0 +1,109 @@
+name: emotion_classification
+id: https://w3id.org/linkml/valuesets/data_science/emotion_classification
+prefixes:
+  # linkml_common: https://w3id.org/linkml-common/
+  MFOEM: http://purl.obolibrary.org/obo/MFOEM_
+  valuesets: https://w3id.org/valuesets/
+default_prefix: valuesets
+slots:
+  basic_emotion:
+    description: Ekman's six basic emotions commonly used in emotion recognition
+    range: BasicEmotionEnum
+  extended_emotion:
+    description: Extended emotion set including complex emotions
+    range: ExtendedEmotionEnum
+enums:
+  BasicEmotionEnum:
+    description: Ekman's six basic emotions commonly used in emotion recognition
+    conforms_to: https://en.wikipedia.org/wiki/Basic_emotions
+    permissible_values:
+      ANGER:
+        description: Feeling of displeasure or hostility
+        title: Anger
+        meaning: MFOEM:000009
+        aliases:
+        - angry
+        - mad
+      DISGUST:
+        description: Feeling of revulsion or strong disapproval
+        title: Disgust
+        meaning: MFOEM:000019
+        aliases:
+        - disgusted
+        - repulsed
+      FEAR:
+        description: Feeling of anxiety or apprehension
+        title: Fear
+        meaning: MFOEM:000026
+        aliases:
+        - afraid
+        - scared
+      HAPPINESS:
+        description: Feeling of pleasure or contentment
+        title: Happiness
+        meaning: MFOEM:000042
+        aliases:
+        - happy
+        - joy
+        - joyful
+      SADNESS:
+        description: Feeling of sorrow or unhappiness
+        title: Sadness
+        meaning: MFOEM:000056
+        aliases:
+        - sad
+        - sorrow
+      SURPRISE:
+        description: Feeling of mild astonishment or shock
+        title: Surprise
+        meaning: MFOEM:000032
+        aliases:
+        - surprised
+        - shocked
+  ExtendedEmotionEnum:
+    description: Extended emotion set including complex emotions
+    conforms_to: https://en.wikipedia.org/wiki/Emotion_classification
+    permissible_values:
+      ANGER:
+        description: Feeling of displeasure or hostility
+        title: Anger
+        meaning: MFOEM:000009
+      DISGUST:
+        description: Feeling of revulsion
+        title: Disgust
+        meaning: MFOEM:000019
+      FEAR:
+        description: Feeling of anxiety
+        title: Fear
+        meaning: MFOEM:000026
+      HAPPINESS:
+        description: Feeling of pleasure
+        title: Happiness
+        meaning: MFOEM:000042
+      SADNESS:
+        description: Feeling of sorrow
+        title: Sadness
+        meaning: MFOEM:000056
+      SURPRISE:
+        description: Feeling of astonishment
+        title: Surprise
+        meaning: MFOEM:000032
+      CONTEMPT:
+        description: Feeling that something is worthless
+        title: Contempt
+        meaning: MFOEM:000018
+      ANTICIPATION:
+        description: Feeling of excitement about something that will happen
+        title: Erwartung
+        meaning: MFOEM:000175
+        aliases:
+        - expectation
+        - expectant
+      TRUST:
+        description: Feeling of confidence in someone or something
+        title: Trust
+        meaning: MFOEM:000224
+      LOVE:
+        description: Feeling of deep affection
+        title: Love
+        meaning: MFOEM:000048

valuesets/schema/data_science/priority_severity.yaml

@@ -0,0 +1,122 @@
+name: priority_severity
+id: https://w3id.org/linkml/valuesets/data_science/priority_severity
+prefixes:
+  # linkml_common: https://w3id.org/linkml-common/
+  NCIT: http://purl.obolibrary.org/obo/NCIT_
+  STATO: http://purl.obolibrary.org/obo/STATO_
+  valuesets: https://w3id.org/valuesets/
+default_prefix: valuesets
+slots:
+  priority_level:
+    description: Standard priority levels for task/issue classification
+    range: PriorityLevelEnum
+  severity_level:
+    description: Severity levels for incident/bug classification
+    range: SeverityLevelEnum
+  confidence_level:
+    description: Confidence levels for predictions and classifications
+    range: ConfidenceLevelEnum
+enums:
+  PriorityLevelEnum:
+    description: Standard priority levels for task/issue classification
+    permissible_values:
+      CRITICAL:
+        description: Highest priority, requires immediate attention
+        title: Critical
+        aliases:
+        - P0
+        - urgent
+        - blocker
+        - '1'
+      HIGH:
+        description: High priority, should be addressed soon
+        title: High
+        aliases:
+        - P1
+        - important
+        - '2'
+      MEDIUM:
+        description: Medium priority, normal workflow
+        title: Medium
+        aliases:
+        - P2
+        - normal
+        - '3'
+      LOW:
+        description: Low priority, can be deferred
+        title: Low
+        aliases:
+        - P3
+        - minor
+        - '4'
+      TRIVIAL:
+        description: Lowest priority, nice to have
+        title: Trivial
+        aliases:
+        - P4
+        - cosmetic
+        - '5'
+  SeverityLevelEnum:
+    description: Severity levels for incident/bug classification
+    permissible_values:
+      CRITICAL:
+        description: System is unusable, data loss possible
+        title: Critical
+        aliases:
+        - S1
+        - blocker
+        - showstopper
+      MAJOR:
+        description: Major functionality impaired
+        title: Major
+        aliases:
+        - S2
+        - severe
+        - high
+      MINOR:
+        description: Minor functionality impaired
+        title: Minor
+        aliases:
+        - S3
+        - moderate
+        - medium
+      TRIVIAL:
+        description: Cosmetic issue, minimal impact
+        title: Trivial
+        aliases:
+        - S4
+        - cosmetic
+        - low
+  ConfidenceLevelEnum:
+    description: Confidence levels for predictions and classifications
+    permissible_values:
+      VERY_HIGH:
+        description: Very high confidence (>95%)
+        title: Very High
+        aliases:
+        - certain
+        - '5'
+      HIGH:
+        description: High confidence (80-95%)
+        title: High
+        aliases:
+        - confident
+        - '4'
+      MEDIUM:
+        description: Medium confidence (60-80%)
+        title: Medium
+        aliases:
+        - moderate
+        - '3'
+      LOW:
+        description: Low confidence (40-60%)
+        title: Low
+        aliases:
+        - uncertain
+        - '2'
+      VERY_LOW:
+        description: Very low confidence (<40%)
+        title: Very Low
+        aliases:
+        - guess
+        - '1'

valuesets/schema/data_science/quality_control.yaml

@@ -0,0 +1,68 @@
+name: quality_control
+id: https://w3id.org/linkml/valuesets/data_science/quality_control
+prefixes:
+  # linkml_common: https://w3id.org/linkml-common/
+  NCIT: http://purl.obolibrary.org/obo/NCIT_
+  valuesets: https://w3id.org/valuesets/
+default_prefix: valuesets
+slots:
+  quality_control:
+    description: Quality control classification labels
+    range: QualityControlEnum
+  defect_classification:
+    description: Manufacturing defect classification
+    range: DefectClassificationEnum
+enums:
+  QualityControlEnum:
+    description: Quality control classification labels
+    permissible_values:
+      PASS:
+        description: Item meets quality standards
+        title: Pass
+        meaning: NCIT:C81275
+        aliases:
+        - passed
+        - acceptable
+        - ok
+        - '1'
+      FAIL:
+        description: Item does not meet quality standards
+        title: Fail
+        meaning: NCIT:C44281
+        aliases:
+        - failed
+        - reject
+        - defective
+        - '0'
+  DefectClassificationEnum:
+    description: Manufacturing defect classification
+    permissible_values:
+      NO_DEFECT:
+        description: No defect detected
+        title: No Defect
+        meaning: NCIT:C14165
+        aliases:
+        - good
+        - normal
+        - '0'
+      MINOR_DEFECT:
+        description: Minor defect that doesn't affect functionality
+        title: Minor Defect
+        aliases:
+        - minor
+        - cosmetic
+        - '1'
+      MAJOR_DEFECT:
+        description: Major defect affecting functionality
+        title: Major Defect
+        aliases:
+        - major
+        - functional
+        - '2'
+      CRITICAL_DEFECT:
+        description: Critical defect rendering item unusable or unsafe
+        title: Critical Defect
+        aliases:
+        - critical
+        - severe
+        - '3'

valuesets/schema/data_science/sentiment_analysis.yaml

@@ -0,0 +1,81 @@
+name: sentiment_analysis
+id: https://w3id.org/linkml/valuesets/data_science/sentiment_analysis
+prefixes:
+  # linkml_common: https://w3id.org/linkml-common/
+  NCIT: http://purl.obolibrary.org/obo/NCIT_
+  valuesets: https://w3id.org/valuesets/
+default_prefix: valuesets
+slots:
+  sentiment_classification:
+    description: Standard labels for sentiment analysis classification tasks
+    range: SentimentClassificationEnum
+  fine_sentiment_classification:
+    description: Fine-grained sentiment analysis labels with intensity levels
+    range: FineSentimentClassificationEnum
+enums:
+  SentimentClassificationEnum:
+    description: Standard labels for sentiment analysis classification tasks
+    permissible_values:
+      POSITIVE:
+        description: Positive sentiment or opinion
+        title: Positive Finding
+        meaning: NCIT:C38758
+        aliases:
+        - pos
+        - '1'
+        - +
+      NEGATIVE:
+        description: Negative sentiment or opinion
+        title: Negative Test Result
+        meaning: NCIT:C35681
+        aliases:
+        - neg
+        - '0'
+        - '-'
+      NEUTRAL:
+        description: Neutral sentiment, neither positive nor negative
+        title: Normal
+        meaning: NCIT:C14165
+        aliases:
+        - neu
+        - '2'
+  FineSentimentClassificationEnum:
+    description: Fine-grained sentiment analysis labels with intensity levels
+    permissible_values:
+      VERY_POSITIVE:
+        description: Strongly positive sentiment
+        title: Positive Finding
+        is_a: POSITIVE
+        meaning: NCIT:C38758
+        aliases:
+        - '5'
+        - ++
+      POSITIVE:
+        description: Positive sentiment
+        title: Positive Finding
+        meaning: NCIT:C38758
+        aliases:
+        - '4'
+        - +
+      NEUTRAL:
+        description: Neutral sentiment
+        title: Normal
+        meaning: NCIT:C14165
+        aliases:
+        - '3'
+        - '0'
+      NEGATIVE:
+        description: Negative sentiment
+        title: Negative Test Result
+        meaning: NCIT:C35681
+        aliases:
+        - '2'
+        - '-'
+      VERY_NEGATIVE:
+        description: Strongly negative sentiment
+        title: Negative Test Result
+        is_a: NEGATIVE
+        meaning: NCIT:C35681
+        aliases:
+        - '1'
+        - --