scipy 1.16.2__cp312-cp312-win_arm64.whl

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Files changed (1530) hide show
  1. scipy/__config__.py +161 -0
  2. scipy/__init__.py +150 -0
  3. scipy/_cyutility.cp312-win_arm64.lib +0 -0
  4. scipy/_cyutility.cp312-win_arm64.pyd +0 -0
  5. scipy/_distributor_init.py +18 -0
  6. scipy/_lib/__init__.py +14 -0
  7. scipy/_lib/_array_api.py +931 -0
  8. scipy/_lib/_array_api_compat_vendor.py +9 -0
  9. scipy/_lib/_array_api_no_0d.py +103 -0
  10. scipy/_lib/_bunch.py +229 -0
  11. scipy/_lib/_ccallback.py +251 -0
  12. scipy/_lib/_ccallback_c.cp312-win_arm64.lib +0 -0
  13. scipy/_lib/_ccallback_c.cp312-win_arm64.pyd +0 -0
  14. scipy/_lib/_disjoint_set.py +254 -0
  15. scipy/_lib/_docscrape.py +761 -0
  16. scipy/_lib/_elementwise_iterative_method.py +346 -0
  17. scipy/_lib/_fpumode.cp312-win_arm64.lib +0 -0
  18. scipy/_lib/_fpumode.cp312-win_arm64.pyd +0 -0
  19. scipy/_lib/_gcutils.py +105 -0
  20. scipy/_lib/_pep440.py +487 -0
  21. scipy/_lib/_sparse.py +41 -0
  22. scipy/_lib/_test_ccallback.cp312-win_arm64.lib +0 -0
  23. scipy/_lib/_test_ccallback.cp312-win_arm64.pyd +0 -0
  24. scipy/_lib/_test_deprecation_call.cp312-win_arm64.lib +0 -0
  25. scipy/_lib/_test_deprecation_call.cp312-win_arm64.pyd +0 -0
  26. scipy/_lib/_test_deprecation_def.cp312-win_arm64.lib +0 -0
  27. scipy/_lib/_test_deprecation_def.cp312-win_arm64.pyd +0 -0
  28. scipy/_lib/_testutils.py +373 -0
  29. scipy/_lib/_threadsafety.py +58 -0
  30. scipy/_lib/_tmpdirs.py +86 -0
  31. scipy/_lib/_uarray/LICENSE +29 -0
  32. scipy/_lib/_uarray/__init__.py +116 -0
  33. scipy/_lib/_uarray/_backend.py +707 -0
  34. scipy/_lib/_uarray/_uarray.cp312-win_arm64.lib +0 -0
  35. scipy/_lib/_uarray/_uarray.cp312-win_arm64.pyd +0 -0
  36. scipy/_lib/_util.py +1283 -0
  37. scipy/_lib/array_api_compat/__init__.py +22 -0
  38. scipy/_lib/array_api_compat/_internal.py +59 -0
  39. scipy/_lib/array_api_compat/common/__init__.py +1 -0
  40. scipy/_lib/array_api_compat/common/_aliases.py +727 -0
  41. scipy/_lib/array_api_compat/common/_fft.py +213 -0
  42. scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
  43. scipy/_lib/array_api_compat/common/_linalg.py +232 -0
  44. scipy/_lib/array_api_compat/common/_typing.py +192 -0
  45. scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
  46. scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
  47. scipy/_lib/array_api_compat/cupy/_info.py +336 -0
  48. scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
  49. scipy/_lib/array_api_compat/cupy/fft.py +36 -0
  50. scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
  51. scipy/_lib/array_api_compat/dask/__init__.py +0 -0
  52. scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
  53. scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
  54. scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
  55. scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
  56. scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
  57. scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
  58. scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
  59. scipy/_lib/array_api_compat/numpy/_info.py +366 -0
  60. scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
  61. scipy/_lib/array_api_compat/numpy/fft.py +35 -0
  62. scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
  63. scipy/_lib/array_api_compat/torch/__init__.py +22 -0
  64. scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
  65. scipy/_lib/array_api_compat/torch/_info.py +369 -0
  66. scipy/_lib/array_api_compat/torch/_typing.py +3 -0
  67. scipy/_lib/array_api_compat/torch/fft.py +85 -0
  68. scipy/_lib/array_api_compat/torch/linalg.py +121 -0
  69. scipy/_lib/array_api_extra/__init__.py +38 -0
  70. scipy/_lib/array_api_extra/_delegation.py +171 -0
  71. scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
  72. scipy/_lib/array_api_extra/_lib/_at.py +463 -0
  73. scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
  74. scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
  75. scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
  76. scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
  77. scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
  78. scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
  79. scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
  80. scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
  81. scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
  82. scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
  83. scipy/_lib/array_api_extra/testing.py +359 -0
  84. scipy/_lib/cobyqa/__init__.py +20 -0
  85. scipy/_lib/cobyqa/framework.py +1240 -0
  86. scipy/_lib/cobyqa/main.py +1506 -0
  87. scipy/_lib/cobyqa/models.py +1529 -0
  88. scipy/_lib/cobyqa/problem.py +1296 -0
  89. scipy/_lib/cobyqa/settings.py +132 -0
  90. scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
  91. scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
  92. scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
  93. scipy/_lib/cobyqa/utils/__init__.py +18 -0
  94. scipy/_lib/cobyqa/utils/exceptions.py +22 -0
  95. scipy/_lib/cobyqa/utils/math.py +77 -0
  96. scipy/_lib/cobyqa/utils/versions.py +67 -0
  97. scipy/_lib/decorator.py +399 -0
  98. scipy/_lib/deprecation.py +274 -0
  99. scipy/_lib/doccer.py +366 -0
  100. scipy/_lib/messagestream.cp312-win_arm64.lib +0 -0
  101. scipy/_lib/messagestream.cp312-win_arm64.pyd +0 -0
  102. scipy/_lib/pyprima/__init__.py +212 -0
  103. scipy/_lib/pyprima/cobyla/__init__.py +0 -0
  104. scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
  105. scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
  106. scipy/_lib/pyprima/cobyla/geometry.py +226 -0
  107. scipy/_lib/pyprima/cobyla/initialize.py +215 -0
  108. scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
  109. scipy/_lib/pyprima/cobyla/update.py +289 -0
  110. scipy/_lib/pyprima/common/__init__.py +0 -0
  111. scipy/_lib/pyprima/common/_bounds.py +34 -0
  112. scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
  113. scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
  114. scipy/_lib/pyprima/common/_project.py +173 -0
  115. scipy/_lib/pyprima/common/checkbreak.py +93 -0
  116. scipy/_lib/pyprima/common/consts.py +47 -0
  117. scipy/_lib/pyprima/common/evaluate.py +99 -0
  118. scipy/_lib/pyprima/common/history.py +38 -0
  119. scipy/_lib/pyprima/common/infos.py +30 -0
  120. scipy/_lib/pyprima/common/linalg.py +435 -0
  121. scipy/_lib/pyprima/common/message.py +290 -0
  122. scipy/_lib/pyprima/common/powalg.py +131 -0
  123. scipy/_lib/pyprima/common/preproc.py +277 -0
  124. scipy/_lib/pyprima/common/present.py +5 -0
  125. scipy/_lib/pyprima/common/ratio.py +54 -0
  126. scipy/_lib/pyprima/common/redrho.py +47 -0
  127. scipy/_lib/pyprima/common/selectx.py +296 -0
  128. scipy/_lib/tests/__init__.py +0 -0
  129. scipy/_lib/tests/test__gcutils.py +110 -0
  130. scipy/_lib/tests/test__pep440.py +67 -0
  131. scipy/_lib/tests/test__testutils.py +32 -0
  132. scipy/_lib/tests/test__threadsafety.py +51 -0
  133. scipy/_lib/tests/test__util.py +641 -0
  134. scipy/_lib/tests/test_array_api.py +322 -0
  135. scipy/_lib/tests/test_bunch.py +169 -0
  136. scipy/_lib/tests/test_ccallback.py +196 -0
  137. scipy/_lib/tests/test_config.py +45 -0
  138. scipy/_lib/tests/test_deprecation.py +10 -0
  139. scipy/_lib/tests/test_doccer.py +143 -0
  140. scipy/_lib/tests/test_import_cycles.py +18 -0
  141. scipy/_lib/tests/test_public_api.py +482 -0
  142. scipy/_lib/tests/test_scipy_version.py +28 -0
  143. scipy/_lib/tests/test_tmpdirs.py +48 -0
  144. scipy/_lib/tests/test_warnings.py +137 -0
  145. scipy/_lib/uarray.py +31 -0
  146. scipy/cluster/__init__.py +31 -0
  147. scipy/cluster/_hierarchy.cp312-win_arm64.lib +0 -0
  148. scipy/cluster/_hierarchy.cp312-win_arm64.pyd +0 -0
  149. scipy/cluster/_optimal_leaf_ordering.cp312-win_arm64.lib +0 -0
  150. scipy/cluster/_optimal_leaf_ordering.cp312-win_arm64.pyd +0 -0
  151. scipy/cluster/_vq.cp312-win_arm64.lib +0 -0
  152. scipy/cluster/_vq.cp312-win_arm64.pyd +0 -0
  153. scipy/cluster/hierarchy.py +4348 -0
  154. scipy/cluster/tests/__init__.py +0 -0
  155. scipy/cluster/tests/hierarchy_test_data.py +145 -0
  156. scipy/cluster/tests/test_disjoint_set.py +202 -0
  157. scipy/cluster/tests/test_hierarchy.py +1238 -0
  158. scipy/cluster/tests/test_vq.py +434 -0
  159. scipy/cluster/vq.py +832 -0
  160. scipy/conftest.py +683 -0
  161. scipy/constants/__init__.py +358 -0
  162. scipy/constants/_codata.py +2266 -0
  163. scipy/constants/_constants.py +369 -0
  164. scipy/constants/codata.py +21 -0
  165. scipy/constants/constants.py +53 -0
  166. scipy/constants/tests/__init__.py +0 -0
  167. scipy/constants/tests/test_codata.py +78 -0
  168. scipy/constants/tests/test_constants.py +83 -0
  169. scipy/datasets/__init__.py +90 -0
  170. scipy/datasets/_download_all.py +71 -0
  171. scipy/datasets/_fetchers.py +225 -0
  172. scipy/datasets/_registry.py +26 -0
  173. scipy/datasets/_utils.py +81 -0
  174. scipy/datasets/tests/__init__.py +0 -0
  175. scipy/datasets/tests/test_data.py +128 -0
  176. scipy/differentiate/__init__.py +27 -0
  177. scipy/differentiate/_differentiate.py +1129 -0
  178. scipy/differentiate/tests/__init__.py +0 -0
  179. scipy/differentiate/tests/test_differentiate.py +694 -0
  180. scipy/fft/__init__.py +114 -0
  181. scipy/fft/_backend.py +196 -0
  182. scipy/fft/_basic.py +1650 -0
  183. scipy/fft/_basic_backend.py +197 -0
  184. scipy/fft/_debug_backends.py +22 -0
  185. scipy/fft/_fftlog.py +223 -0
  186. scipy/fft/_fftlog_backend.py +200 -0
  187. scipy/fft/_helper.py +348 -0
  188. scipy/fft/_pocketfft/LICENSE.md +25 -0
  189. scipy/fft/_pocketfft/__init__.py +9 -0
  190. scipy/fft/_pocketfft/basic.py +251 -0
  191. scipy/fft/_pocketfft/helper.py +249 -0
  192. scipy/fft/_pocketfft/pypocketfft.cp312-win_arm64.lib +0 -0
  193. scipy/fft/_pocketfft/pypocketfft.cp312-win_arm64.pyd +0 -0
  194. scipy/fft/_pocketfft/realtransforms.py +109 -0
  195. scipy/fft/_pocketfft/tests/__init__.py +0 -0
  196. scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
  197. scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
  198. scipy/fft/_realtransforms.py +706 -0
  199. scipy/fft/_realtransforms_backend.py +63 -0
  200. scipy/fft/tests/__init__.py +0 -0
  201. scipy/fft/tests/mock_backend.py +96 -0
  202. scipy/fft/tests/test_backend.py +98 -0
  203. scipy/fft/tests/test_basic.py +504 -0
  204. scipy/fft/tests/test_fftlog.py +215 -0
  205. scipy/fft/tests/test_helper.py +558 -0
  206. scipy/fft/tests/test_multithreading.py +84 -0
  207. scipy/fft/tests/test_real_transforms.py +247 -0
  208. scipy/fftpack/__init__.py +103 -0
  209. scipy/fftpack/_basic.py +428 -0
  210. scipy/fftpack/_helper.py +115 -0
  211. scipy/fftpack/_pseudo_diffs.py +554 -0
  212. scipy/fftpack/_realtransforms.py +598 -0
  213. scipy/fftpack/basic.py +20 -0
  214. scipy/fftpack/convolve.cp312-win_arm64.lib +0 -0
  215. scipy/fftpack/convolve.cp312-win_arm64.pyd +0 -0
  216. scipy/fftpack/helper.py +19 -0
  217. scipy/fftpack/pseudo_diffs.py +22 -0
  218. scipy/fftpack/realtransforms.py +19 -0
  219. scipy/fftpack/tests/__init__.py +0 -0
  220. scipy/fftpack/tests/fftw_double_ref.npz +0 -0
  221. scipy/fftpack/tests/fftw_longdouble_ref.npz +0 -0
  222. scipy/fftpack/tests/fftw_single_ref.npz +0 -0
  223. scipy/fftpack/tests/test.npz +0 -0
  224. scipy/fftpack/tests/test_basic.py +877 -0
  225. scipy/fftpack/tests/test_helper.py +54 -0
  226. scipy/fftpack/tests/test_import.py +33 -0
  227. scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
  228. scipy/fftpack/tests/test_real_transforms.py +836 -0
  229. scipy/integrate/__init__.py +122 -0
  230. scipy/integrate/_bvp.py +1160 -0
  231. scipy/integrate/_cubature.py +729 -0
  232. scipy/integrate/_dop.cp312-win_arm64.lib +0 -0
  233. scipy/integrate/_dop.cp312-win_arm64.pyd +0 -0
  234. scipy/integrate/_ivp/__init__.py +8 -0
  235. scipy/integrate/_ivp/base.py +290 -0
  236. scipy/integrate/_ivp/bdf.py +478 -0
  237. scipy/integrate/_ivp/common.py +451 -0
  238. scipy/integrate/_ivp/dop853_coefficients.py +193 -0
  239. scipy/integrate/_ivp/ivp.py +755 -0
  240. scipy/integrate/_ivp/lsoda.py +224 -0
  241. scipy/integrate/_ivp/radau.py +572 -0
  242. scipy/integrate/_ivp/rk.py +601 -0
  243. scipy/integrate/_ivp/tests/__init__.py +0 -0
  244. scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
  245. scipy/integrate/_ivp/tests/test_rk.py +37 -0
  246. scipy/integrate/_lebedev.py +5450 -0
  247. scipy/integrate/_lsoda.cp312-win_arm64.lib +0 -0
  248. scipy/integrate/_lsoda.cp312-win_arm64.pyd +0 -0
  249. scipy/integrate/_ode.py +1395 -0
  250. scipy/integrate/_odepack.cp312-win_arm64.lib +0 -0
  251. scipy/integrate/_odepack.cp312-win_arm64.pyd +0 -0
  252. scipy/integrate/_odepack_py.py +273 -0
  253. scipy/integrate/_quad_vec.py +674 -0
  254. scipy/integrate/_quadpack.cp312-win_arm64.lib +0 -0
  255. scipy/integrate/_quadpack.cp312-win_arm64.pyd +0 -0
  256. scipy/integrate/_quadpack_py.py +1283 -0
  257. scipy/integrate/_quadrature.py +1336 -0
  258. scipy/integrate/_rules/__init__.py +12 -0
  259. scipy/integrate/_rules/_base.py +518 -0
  260. scipy/integrate/_rules/_gauss_kronrod.py +202 -0
  261. scipy/integrate/_rules/_gauss_legendre.py +62 -0
  262. scipy/integrate/_rules/_genz_malik.py +210 -0
  263. scipy/integrate/_tanhsinh.py +1385 -0
  264. scipy/integrate/_test_multivariate.cp312-win_arm64.lib +0 -0
  265. scipy/integrate/_test_multivariate.cp312-win_arm64.pyd +0 -0
  266. scipy/integrate/_test_odeint_banded.cp312-win_arm64.lib +0 -0
  267. scipy/integrate/_test_odeint_banded.cp312-win_arm64.pyd +0 -0
  268. scipy/integrate/_vode.cp312-win_arm64.lib +0 -0
  269. scipy/integrate/_vode.cp312-win_arm64.pyd +0 -0
  270. scipy/integrate/dop.py +15 -0
  271. scipy/integrate/lsoda.py +15 -0
  272. scipy/integrate/odepack.py +17 -0
  273. scipy/integrate/quadpack.py +23 -0
  274. scipy/integrate/tests/__init__.py +0 -0
  275. scipy/integrate/tests/test__quad_vec.py +211 -0
  276. scipy/integrate/tests/test_banded_ode_solvers.py +305 -0
  277. scipy/integrate/tests/test_bvp.py +714 -0
  278. scipy/integrate/tests/test_cubature.py +1375 -0
  279. scipy/integrate/tests/test_integrate.py +840 -0
  280. scipy/integrate/tests/test_odeint_jac.py +74 -0
  281. scipy/integrate/tests/test_quadpack.py +680 -0
  282. scipy/integrate/tests/test_quadrature.py +730 -0
  283. scipy/integrate/tests/test_tanhsinh.py +1171 -0
  284. scipy/integrate/vode.py +15 -0
  285. scipy/interpolate/__init__.py +228 -0
  286. scipy/interpolate/_bary_rational.py +715 -0
  287. scipy/interpolate/_bsplines.py +2469 -0
  288. scipy/interpolate/_cubic.py +973 -0
  289. scipy/interpolate/_dfitpack.cp312-win_arm64.lib +0 -0
  290. scipy/interpolate/_dfitpack.cp312-win_arm64.pyd +0 -0
  291. scipy/interpolate/_dierckx.cp312-win_arm64.lib +0 -0
  292. scipy/interpolate/_dierckx.cp312-win_arm64.pyd +0 -0
  293. scipy/interpolate/_fitpack.cp312-win_arm64.lib +0 -0
  294. scipy/interpolate/_fitpack.cp312-win_arm64.pyd +0 -0
  295. scipy/interpolate/_fitpack2.py +2397 -0
  296. scipy/interpolate/_fitpack_impl.py +811 -0
  297. scipy/interpolate/_fitpack_py.py +898 -0
  298. scipy/interpolate/_fitpack_repro.py +996 -0
  299. scipy/interpolate/_interpnd.cp312-win_arm64.lib +0 -0
  300. scipy/interpolate/_interpnd.cp312-win_arm64.pyd +0 -0
  301. scipy/interpolate/_interpolate.py +2266 -0
  302. scipy/interpolate/_ndbspline.py +415 -0
  303. scipy/interpolate/_ndgriddata.py +329 -0
  304. scipy/interpolate/_pade.py +67 -0
  305. scipy/interpolate/_polyint.py +1025 -0
  306. scipy/interpolate/_ppoly.cp312-win_arm64.lib +0 -0
  307. scipy/interpolate/_ppoly.cp312-win_arm64.pyd +0 -0
  308. scipy/interpolate/_rbf.py +290 -0
  309. scipy/interpolate/_rbfinterp.py +550 -0
  310. scipy/interpolate/_rbfinterp_pythran.cp312-win_arm64.lib +0 -0
  311. scipy/interpolate/_rbfinterp_pythran.cp312-win_arm64.pyd +0 -0
  312. scipy/interpolate/_rgi.py +764 -0
  313. scipy/interpolate/_rgi_cython.cp312-win_arm64.lib +0 -0
  314. scipy/interpolate/_rgi_cython.cp312-win_arm64.pyd +0 -0
  315. scipy/interpolate/dfitpack.py +24 -0
  316. scipy/interpolate/fitpack.py +31 -0
  317. scipy/interpolate/fitpack2.py +29 -0
  318. scipy/interpolate/interpnd.py +24 -0
  319. scipy/interpolate/interpolate.py +30 -0
  320. scipy/interpolate/ndgriddata.py +23 -0
  321. scipy/interpolate/polyint.py +24 -0
  322. scipy/interpolate/rbf.py +18 -0
  323. scipy/interpolate/tests/__init__.py +0 -0
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  1520. scipy/stats/tests/test_survival.py +466 -0
  1521. scipy/stats/tests/test_tukeylambda_stats.py +85 -0
  1522. scipy/stats/tests/test_variation.py +216 -0
  1523. scipy/version.py +12 -0
  1524. scipy-1.16.2.dist-info/DELVEWHEEL +2 -0
  1525. scipy-1.16.2.dist-info/LICENSE.txt +912 -0
  1526. scipy-1.16.2.dist-info/METADATA +1061 -0
  1527. scipy-1.16.2.dist-info/RECORD +1530 -0
  1528. scipy-1.16.2.dist-info/WHEEL +4 -0
  1529. scipy.libs/msvcp140-5f1c5dd31916990d94181e07bc3afb32.dll +0 -0
  1530. scipy.libs/scipy_openblas-f3ac85b1f412f7e86514c923dc4058d1.dll +0 -0
@@ -0,0 +1,1287 @@
1
+ from itertools import product
2
+ from numpy.testing import (assert_, assert_allclose, assert_array_less,
3
+ assert_equal, assert_no_warnings, suppress_warnings)
4
+ import pytest
5
+ from pytest import raises as assert_raises
6
+ import numpy as np
7
+ from scipy.optimize._numdiff import group_columns
8
+ from scipy.integrate import solve_ivp, RK23, RK45, DOP853, Radau, BDF, LSODA
9
+ from scipy.integrate import OdeSolution
10
+ from scipy.integrate._ivp.common import num_jac, select_initial_step
11
+ from scipy.integrate._ivp.base import ConstantDenseOutput
12
+ from scipy.sparse import coo_matrix, csc_matrix
13
+
14
+
15
+ def fun_zero(t, y):
16
+ return np.zeros_like(y)
17
+
18
+
19
+ def fun_linear(t, y):
20
+ return np.array([-y[0] - 5 * y[1], y[0] + y[1]])
21
+
22
+
23
+ def jac_linear():
24
+ return np.array([[-1, -5], [1, 1]])
25
+
26
+
27
+ def sol_linear(t):
28
+ return np.vstack((-5 * np.sin(2 * t),
29
+ 2 * np.cos(2 * t) + np.sin(2 * t)))
30
+
31
+
32
+ def fun_rational(t, y):
33
+ return np.array([y[1] / t,
34
+ y[1] * (y[0] + 2 * y[1] - 1) / (t * (y[0] - 1))])
35
+
36
+
37
+ def fun_rational_vectorized(t, y):
38
+ return np.vstack((y[1] / t,
39
+ y[1] * (y[0] + 2 * y[1] - 1) / (t * (y[0] - 1))))
40
+
41
+
42
+ def jac_rational(t, y):
43
+ return np.array([
44
+ [0, 1 / t],
45
+ [-2 * y[1] ** 2 / (t * (y[0] - 1) ** 2),
46
+ (y[0] + 4 * y[1] - 1) / (t * (y[0] - 1))]
47
+ ])
48
+
49
+
50
+ def jac_rational_sparse(t, y):
51
+ return csc_matrix([
52
+ [0, 1 / t],
53
+ [-2 * y[1] ** 2 / (t * (y[0] - 1) ** 2),
54
+ (y[0] + 4 * y[1] - 1) / (t * (y[0] - 1))]
55
+ ])
56
+
57
+
58
+ def sol_rational(t):
59
+ return np.asarray((t / (t + 10), 10 * t / (t + 10) ** 2))
60
+
61
+
62
+ def fun_medazko(t, y):
63
+ n = y.shape[0] // 2
64
+ k = 100
65
+ c = 4
66
+
67
+ phi = 2 if t <= 5 else 0
68
+ y = np.hstack((phi, 0, y, y[-2]))
69
+
70
+ d = 1 / n
71
+ j = np.arange(n) + 1
72
+ alpha = 2 * (j * d - 1) ** 3 / c ** 2
73
+ beta = (j * d - 1) ** 4 / c ** 2
74
+
75
+ j_2_p1 = 2 * j + 2
76
+ j_2_m3 = 2 * j - 2
77
+ j_2_m1 = 2 * j
78
+ j_2 = 2 * j + 1
79
+
80
+ f = np.empty(2 * n)
81
+ f[::2] = (alpha * (y[j_2_p1] - y[j_2_m3]) / (2 * d) +
82
+ beta * (y[j_2_m3] - 2 * y[j_2_m1] + y[j_2_p1]) / d ** 2 -
83
+ k * y[j_2_m1] * y[j_2])
84
+ f[1::2] = -k * y[j_2] * y[j_2_m1]
85
+
86
+ return f
87
+
88
+
89
+ def medazko_sparsity(n):
90
+ cols = []
91
+ rows = []
92
+
93
+ i = np.arange(n) * 2
94
+
95
+ cols.append(i[1:])
96
+ rows.append(i[1:] - 2)
97
+
98
+ cols.append(i)
99
+ rows.append(i)
100
+
101
+ cols.append(i)
102
+ rows.append(i + 1)
103
+
104
+ cols.append(i[:-1])
105
+ rows.append(i[:-1] + 2)
106
+
107
+ i = np.arange(n) * 2 + 1
108
+
109
+ cols.append(i)
110
+ rows.append(i)
111
+
112
+ cols.append(i)
113
+ rows.append(i - 1)
114
+
115
+ cols = np.hstack(cols)
116
+ rows = np.hstack(rows)
117
+
118
+ return coo_matrix((np.ones_like(cols), (cols, rows)))
119
+
120
+
121
+ def fun_complex(t, y):
122
+ return -y
123
+
124
+
125
+ def jac_complex(t, y):
126
+ return -np.eye(y.shape[0])
127
+
128
+
129
+ def jac_complex_sparse(t, y):
130
+ return csc_matrix(jac_complex(t, y))
131
+
132
+
133
+ def sol_complex(t):
134
+ y = (0.5 + 1j) * np.exp(-t)
135
+ return y.reshape((1, -1))
136
+
137
+
138
+ def fun_event_dense_output_LSODA(t, y):
139
+ return y * (t - 2)
140
+
141
+
142
+ def jac_event_dense_output_LSODA(t, y):
143
+ return t - 2
144
+
145
+
146
+ def sol_event_dense_output_LSODA(t):
147
+ return np.exp(t ** 2 / 2 - 2 * t + np.log(0.05) - 6)
148
+
149
+
150
+ def compute_error(y, y_true, rtol, atol):
151
+ e = (y - y_true) / (atol + rtol * np.abs(y_true))
152
+ return np.linalg.norm(e, axis=0) / np.sqrt(e.shape[0])
153
+
154
+ def test_duplicate_timestamps():
155
+ def upward_cannon(t, y):
156
+ return [y[1], -9.80665]
157
+
158
+ def hit_ground(t, y):
159
+ return y[0]
160
+
161
+ hit_ground.terminal = True
162
+ hit_ground.direction = -1
163
+
164
+ sol = solve_ivp(upward_cannon, [0, np.inf], [0, 0.01],
165
+ max_step=0.05 * 0.001 / 9.80665,
166
+ events=hit_ground, dense_output=True)
167
+ assert_allclose(sol.sol(0.01), np.asarray([-0.00039033, -0.08806632]),
168
+ rtol=1e-5, atol=1e-8)
169
+ assert_allclose(sol.t_events, np.asarray([[0.00203943]]), rtol=1e-5, atol=1e-8)
170
+ assert_allclose(sol.y_events, [np.asarray([[ 0.0, -0.01 ]])], atol=1e-9)
171
+ assert sol.success
172
+ assert_equal(sol.status, 1)
173
+
174
+ @pytest.mark.thread_unsafe
175
+ def test_integration():
176
+ rtol = 1e-3
177
+ atol = 1e-6
178
+ y0 = [1/3, 2/9]
179
+
180
+ for vectorized, method, t_span, jac in product(
181
+ [False, True],
182
+ ['RK23', 'RK45', 'DOP853', 'Radau', 'BDF', 'LSODA'],
183
+ [[5, 9], [5, 1]],
184
+ [None, jac_rational, jac_rational_sparse]):
185
+
186
+ if vectorized:
187
+ fun = fun_rational_vectorized
188
+ else:
189
+ fun = fun_rational
190
+
191
+ with suppress_warnings() as sup:
192
+ sup.filter(UserWarning,
193
+ "The following arguments have no effect for a chosen "
194
+ "solver: `jac`")
195
+ res = solve_ivp(fun, t_span, y0, rtol=rtol,
196
+ atol=atol, method=method, dense_output=True,
197
+ jac=jac, vectorized=vectorized)
198
+ assert_equal(res.t[0], t_span[0])
199
+ assert_(res.t_events is None)
200
+ assert_(res.y_events is None)
201
+ assert_(res.success)
202
+ assert_equal(res.status, 0)
203
+
204
+ if method == 'DOP853':
205
+ # DOP853 spends more functions evaluation because it doesn't
206
+ # have enough time to develop big enough step size.
207
+ assert_(res.nfev < 50)
208
+ else:
209
+ assert_(res.nfev < 40)
210
+
211
+ if method in ['RK23', 'RK45', 'DOP853', 'LSODA']:
212
+ assert_equal(res.njev, 0)
213
+ assert_equal(res.nlu, 0)
214
+ else:
215
+ assert_(0 < res.njev < 3)
216
+ assert_(0 < res.nlu < 10)
217
+
218
+ y_true = sol_rational(res.t)
219
+ e = compute_error(res.y, y_true, rtol, atol)
220
+ assert_(np.all(e < 5))
221
+
222
+ tc = np.linspace(*t_span)
223
+ yc_true = sol_rational(tc)
224
+ yc = res.sol(tc)
225
+
226
+ e = compute_error(yc, yc_true, rtol, atol)
227
+ assert_(np.all(e < 5))
228
+
229
+ tc = (t_span[0] + t_span[-1]) / 2
230
+ yc_true = sol_rational(tc)
231
+ yc = res.sol(tc)
232
+
233
+ e = compute_error(yc, yc_true, rtol, atol)
234
+ assert_(np.all(e < 5))
235
+
236
+ assert_allclose(res.sol(res.t), res.y, rtol=1e-15, atol=1e-15)
237
+
238
+
239
+ @pytest.mark.thread_unsafe
240
+ def test_integration_complex():
241
+ rtol = 1e-3
242
+ atol = 1e-6
243
+ y0 = [0.5 + 1j]
244
+ t_span = [0, 1]
245
+ tc = np.linspace(t_span[0], t_span[1])
246
+ for method, jac in product(['RK23', 'RK45', 'DOP853', 'BDF'],
247
+ [None, jac_complex, jac_complex_sparse]):
248
+ with suppress_warnings() as sup:
249
+ sup.filter(UserWarning,
250
+ "The following arguments have no effect for a chosen "
251
+ "solver: `jac`")
252
+ res = solve_ivp(fun_complex, t_span, y0, method=method,
253
+ dense_output=True, rtol=rtol, atol=atol, jac=jac)
254
+
255
+ assert_equal(res.t[0], t_span[0])
256
+ assert_(res.t_events is None)
257
+ assert_(res.y_events is None)
258
+ assert_(res.success)
259
+ assert_equal(res.status, 0)
260
+
261
+ if method == 'DOP853':
262
+ assert res.nfev < 35
263
+ else:
264
+ assert res.nfev < 25
265
+
266
+ if method == 'BDF':
267
+ assert_equal(res.njev, 1)
268
+ assert res.nlu < 6
269
+ else:
270
+ assert res.njev == 0
271
+ assert res.nlu == 0
272
+
273
+ y_true = sol_complex(res.t)
274
+ e = compute_error(res.y, y_true, rtol, atol)
275
+ assert np.all(e < 5)
276
+
277
+ yc_true = sol_complex(tc)
278
+ yc = res.sol(tc)
279
+ e = compute_error(yc, yc_true, rtol, atol)
280
+
281
+ assert np.all(e < 5)
282
+
283
+
284
+ @pytest.mark.fail_slow(5)
285
+ def test_integration_sparse_difference():
286
+ n = 200
287
+ t_span = [0, 20]
288
+ y0 = np.zeros(2 * n)
289
+ y0[1::2] = 1
290
+ sparsity = medazko_sparsity(n)
291
+
292
+ for method in ['BDF', 'Radau']:
293
+ res = solve_ivp(fun_medazko, t_span, y0, method=method,
294
+ jac_sparsity=sparsity)
295
+
296
+ assert_equal(res.t[0], t_span[0])
297
+ assert_(res.t_events is None)
298
+ assert_(res.y_events is None)
299
+ assert_(res.success)
300
+ assert_equal(res.status, 0)
301
+
302
+ assert_allclose(res.y[78, -1], 0.233994e-3, rtol=1e-2)
303
+ assert_allclose(res.y[79, -1], 0, atol=1e-3)
304
+ assert_allclose(res.y[148, -1], 0.359561e-3, rtol=1e-2)
305
+ assert_allclose(res.y[149, -1], 0, atol=1e-3)
306
+ assert_allclose(res.y[198, -1], 0.117374129e-3, rtol=1e-2)
307
+ assert_allclose(res.y[199, -1], 0.6190807e-5, atol=1e-3)
308
+ assert_allclose(res.y[238, -1], 0, atol=1e-3)
309
+ assert_allclose(res.y[239, -1], 0.9999997, rtol=1e-2)
310
+
311
+
312
+ def test_integration_const_jac():
313
+ rtol = 1e-3
314
+ atol = 1e-6
315
+ y0 = [0, 2]
316
+ t_span = [0, 2]
317
+ J = jac_linear()
318
+ J_sparse = csc_matrix(J)
319
+
320
+ for method, jac in product(['Radau', 'BDF'], [J, J_sparse]):
321
+ res = solve_ivp(fun_linear, t_span, y0, rtol=rtol, atol=atol,
322
+ method=method, dense_output=True, jac=jac)
323
+ assert_equal(res.t[0], t_span[0])
324
+ assert_(res.t_events is None)
325
+ assert_(res.y_events is None)
326
+ assert_(res.success)
327
+ assert_equal(res.status, 0)
328
+
329
+ assert_(res.nfev < 100)
330
+ assert_equal(res.njev, 0)
331
+ assert_(0 < res.nlu < 15)
332
+
333
+ y_true = sol_linear(res.t)
334
+ e = compute_error(res.y, y_true, rtol, atol)
335
+ assert_(np.all(e < 10))
336
+
337
+ tc = np.linspace(*t_span)
338
+ yc_true = sol_linear(tc)
339
+ yc = res.sol(tc)
340
+
341
+ e = compute_error(yc, yc_true, rtol, atol)
342
+ assert_(np.all(e < 15))
343
+
344
+ assert_allclose(res.sol(res.t), res.y, rtol=1e-14, atol=1e-14)
345
+
346
+
347
+ @pytest.mark.slow
348
+ @pytest.mark.parametrize('method', ['Radau', 'BDF', 'LSODA'])
349
+ def test_integration_stiff(method, num_parallel_threads):
350
+ rtol = 1e-6
351
+ atol = 1e-6
352
+ y0 = [1e4, 0, 0]
353
+ tspan = [0, 1e8]
354
+
355
+ if method == 'LSODA' and num_parallel_threads > 1:
356
+ pytest.skip(reason='LSODA does not allow for concurrent calls')
357
+
358
+ def fun_robertson(t, state):
359
+ x, y, z = state
360
+ return [
361
+ -0.04 * x + 1e4 * y * z,
362
+ 0.04 * x - 1e4 * y * z - 3e7 * y * y,
363
+ 3e7 * y * y,
364
+ ]
365
+
366
+ res = solve_ivp(fun_robertson, tspan, y0, rtol=rtol,
367
+ atol=atol, method=method)
368
+
369
+ # If the stiff mode is not activated correctly, these numbers will be much bigger
370
+ assert res.nfev < 5000
371
+ assert res.njev < 200
372
+
373
+
374
+ def test_events(num_parallel_threads):
375
+ def event_rational_1(t, y):
376
+ return y[0] - y[1] ** 0.7
377
+
378
+ def event_rational_2(t, y):
379
+ return y[1] ** 0.6 - y[0]
380
+
381
+ def event_rational_3(t, y):
382
+ return t - 7.4
383
+
384
+ event_rational_3.terminal = True
385
+
386
+ for method in ['RK23', 'RK45', 'DOP853', 'Radau', 'BDF', 'LSODA']:
387
+ if method == 'LSODA' and num_parallel_threads > 1:
388
+ continue
389
+
390
+ res = solve_ivp(fun_rational, [5, 8], [1/3, 2/9], method=method,
391
+ events=(event_rational_1, event_rational_2))
392
+ assert_equal(res.status, 0)
393
+ assert_equal(res.t_events[0].size, 1)
394
+ assert_equal(res.t_events[1].size, 1)
395
+ assert_(5.3 < res.t_events[0][0] < 5.7)
396
+ assert_(7.3 < res.t_events[1][0] < 7.7)
397
+
398
+ assert_equal(res.y_events[0].shape, (1, 2))
399
+ assert_equal(res.y_events[1].shape, (1, 2))
400
+ assert np.isclose(
401
+ event_rational_1(res.t_events[0][0], res.y_events[0][0]), 0)
402
+ assert np.isclose(
403
+ event_rational_2(res.t_events[1][0], res.y_events[1][0]), 0)
404
+
405
+ event_rational_1.direction = 1
406
+ event_rational_2.direction = 1
407
+ res = solve_ivp(fun_rational, [5, 8], [1 / 3, 2 / 9], method=method,
408
+ events=(event_rational_1, event_rational_2))
409
+ assert_equal(res.status, 0)
410
+ assert_equal(res.t_events[0].size, 1)
411
+ assert_equal(res.t_events[1].size, 0)
412
+ assert_(5.3 < res.t_events[0][0] < 5.7)
413
+ assert_equal(res.y_events[0].shape, (1, 2))
414
+ assert_equal(res.y_events[1].shape, (0,))
415
+ assert np.isclose(
416
+ event_rational_1(res.t_events[0][0], res.y_events[0][0]), 0)
417
+
418
+ event_rational_1.direction = -1
419
+ event_rational_2.direction = -1
420
+ res = solve_ivp(fun_rational, [5, 8], [1 / 3, 2 / 9], method=method,
421
+ events=(event_rational_1, event_rational_2))
422
+ assert_equal(res.status, 0)
423
+ assert_equal(res.t_events[0].size, 0)
424
+ assert_equal(res.t_events[1].size, 1)
425
+ assert_(7.3 < res.t_events[1][0] < 7.7)
426
+ assert_equal(res.y_events[0].shape, (0,))
427
+ assert_equal(res.y_events[1].shape, (1, 2))
428
+ assert np.isclose(
429
+ event_rational_2(res.t_events[1][0], res.y_events[1][0]), 0)
430
+
431
+ event_rational_1.direction = 0
432
+ event_rational_2.direction = 0
433
+
434
+ res = solve_ivp(fun_rational, [5, 8], [1 / 3, 2 / 9], method=method,
435
+ events=(event_rational_1, event_rational_2,
436
+ event_rational_3), dense_output=True)
437
+ assert_equal(res.status, 1)
438
+ assert_equal(res.t_events[0].size, 1)
439
+ assert_equal(res.t_events[1].size, 0)
440
+ assert_equal(res.t_events[2].size, 1)
441
+ assert_(5.3 < res.t_events[0][0] < 5.7)
442
+ assert_(7.3 < res.t_events[2][0] < 7.5)
443
+ assert_equal(res.y_events[0].shape, (1, 2))
444
+ assert_equal(res.y_events[1].shape, (0,))
445
+ assert_equal(res.y_events[2].shape, (1, 2))
446
+ assert np.isclose(
447
+ event_rational_1(res.t_events[0][0], res.y_events[0][0]), 0)
448
+ assert np.isclose(
449
+ event_rational_3(res.t_events[2][0], res.y_events[2][0]), 0)
450
+
451
+ res = solve_ivp(fun_rational, [5, 8], [1 / 3, 2 / 9], method=method,
452
+ events=event_rational_1, dense_output=True)
453
+ assert_equal(res.status, 0)
454
+ assert_equal(res.t_events[0].size, 1)
455
+ assert_(5.3 < res.t_events[0][0] < 5.7)
456
+
457
+ assert_equal(res.y_events[0].shape, (1, 2))
458
+ assert np.isclose(
459
+ event_rational_1(res.t_events[0][0], res.y_events[0][0]), 0)
460
+
461
+ # Also test that termination by event doesn't break interpolants.
462
+ tc = np.linspace(res.t[0], res.t[-1])
463
+ yc_true = sol_rational(tc)
464
+ yc = res.sol(tc)
465
+ e = compute_error(yc, yc_true, 1e-3, 1e-6)
466
+ assert_(np.all(e < 5))
467
+
468
+ # Test that the y_event matches solution
469
+ assert np.allclose(sol_rational(res.t_events[0][0]), res.y_events[0][0],
470
+ rtol=1e-3, atol=1e-6)
471
+
472
+ # Test in backward direction.
473
+ event_rational_1.direction = 0
474
+ event_rational_2.direction = 0
475
+ for method in ['RK23', 'RK45', 'DOP853', 'Radau', 'BDF', 'LSODA']:
476
+ if method == 'LSODA' and num_parallel_threads > 1:
477
+ continue
478
+
479
+ res = solve_ivp(fun_rational, [8, 5], [4/9, 20/81], method=method,
480
+ events=(event_rational_1, event_rational_2))
481
+ assert_equal(res.status, 0)
482
+ assert_equal(res.t_events[0].size, 1)
483
+ assert_equal(res.t_events[1].size, 1)
484
+ assert_(5.3 < res.t_events[0][0] < 5.7)
485
+ assert_(7.3 < res.t_events[1][0] < 7.7)
486
+
487
+ assert_equal(res.y_events[0].shape, (1, 2))
488
+ assert_equal(res.y_events[1].shape, (1, 2))
489
+ assert np.isclose(
490
+ event_rational_1(res.t_events[0][0], res.y_events[0][0]), 0)
491
+ assert np.isclose(
492
+ event_rational_2(res.t_events[1][0], res.y_events[1][0]), 0)
493
+
494
+ event_rational_1.direction = -1
495
+ event_rational_2.direction = -1
496
+ res = solve_ivp(fun_rational, [8, 5], [4/9, 20/81], method=method,
497
+ events=(event_rational_1, event_rational_2))
498
+ assert_equal(res.status, 0)
499
+ assert_equal(res.t_events[0].size, 1)
500
+ assert_equal(res.t_events[1].size, 0)
501
+ assert_(5.3 < res.t_events[0][0] < 5.7)
502
+
503
+ assert_equal(res.y_events[0].shape, (1, 2))
504
+ assert_equal(res.y_events[1].shape, (0,))
505
+ assert np.isclose(
506
+ event_rational_1(res.t_events[0][0], res.y_events[0][0]), 0)
507
+
508
+ event_rational_1.direction = 1
509
+ event_rational_2.direction = 1
510
+ res = solve_ivp(fun_rational, [8, 5], [4/9, 20/81], method=method,
511
+ events=(event_rational_1, event_rational_2))
512
+ assert_equal(res.status, 0)
513
+ assert_equal(res.t_events[0].size, 0)
514
+ assert_equal(res.t_events[1].size, 1)
515
+ assert_(7.3 < res.t_events[1][0] < 7.7)
516
+
517
+ assert_equal(res.y_events[0].shape, (0,))
518
+ assert_equal(res.y_events[1].shape, (1, 2))
519
+ assert np.isclose(
520
+ event_rational_2(res.t_events[1][0], res.y_events[1][0]), 0)
521
+
522
+ event_rational_1.direction = 0
523
+ event_rational_2.direction = 0
524
+
525
+ res = solve_ivp(fun_rational, [8, 5], [4/9, 20/81], method=method,
526
+ events=(event_rational_1, event_rational_2,
527
+ event_rational_3), dense_output=True)
528
+ assert_equal(res.status, 1)
529
+ assert_equal(res.t_events[0].size, 0)
530
+ assert_equal(res.t_events[1].size, 1)
531
+ assert_equal(res.t_events[2].size, 1)
532
+ assert_(7.3 < res.t_events[1][0] < 7.7)
533
+ assert_(7.3 < res.t_events[2][0] < 7.5)
534
+
535
+ assert_equal(res.y_events[0].shape, (0,))
536
+ assert_equal(res.y_events[1].shape, (1, 2))
537
+ assert_equal(res.y_events[2].shape, (1, 2))
538
+ assert np.isclose(
539
+ event_rational_2(res.t_events[1][0], res.y_events[1][0]), 0)
540
+ assert np.isclose(
541
+ event_rational_3(res.t_events[2][0], res.y_events[2][0]), 0)
542
+
543
+ # Also test that termination by event doesn't break interpolants.
544
+ tc = np.linspace(res.t[-1], res.t[0])
545
+ yc_true = sol_rational(tc)
546
+ yc = res.sol(tc)
547
+ e = compute_error(yc, yc_true, 1e-3, 1e-6)
548
+ assert_(np.all(e < 5))
549
+
550
+ assert np.allclose(sol_rational(res.t_events[1][0]), res.y_events[1][0],
551
+ rtol=1e-3, atol=1e-6)
552
+ assert np.allclose(sol_rational(res.t_events[2][0]), res.y_events[2][0],
553
+ rtol=1e-3, atol=1e-6)
554
+
555
+
556
+ def _get_harmonic_oscillator():
557
+ def f(t, y):
558
+ return [y[1], -y[0]]
559
+
560
+ def event(t, y):
561
+ return y[0]
562
+
563
+ return f, event
564
+
565
+
566
+ @pytest.mark.parametrize('n_events', [3, 4])
567
+ def test_event_terminal_integer(n_events):
568
+ f, event = _get_harmonic_oscillator()
569
+ event.terminal = n_events
570
+ res = solve_ivp(f, (0, 100), [1, 0], events=event)
571
+ assert len(res.t_events[0]) == n_events
572
+ assert len(res.y_events[0]) == n_events
573
+ assert_allclose(res.y_events[0][:, 0], 0, atol=1e-14)
574
+
575
+
576
+ def test_event_terminal_iv():
577
+ f, event = _get_harmonic_oscillator()
578
+ args = (f, (0, 100), [1, 0])
579
+
580
+ event.terminal = None
581
+ res = solve_ivp(*args, events=event)
582
+ event.terminal = 0
583
+ ref = solve_ivp(*args, events=event)
584
+ assert_allclose(res.t_events, ref.t_events)
585
+
586
+ message = "The `terminal` attribute..."
587
+ event.terminal = -1
588
+ with pytest.raises(ValueError, match=message):
589
+ solve_ivp(*args, events=event)
590
+ event.terminal = 3.5
591
+ with pytest.raises(ValueError, match=message):
592
+ solve_ivp(*args, events=event)
593
+
594
+
595
+ def test_max_step(num_parallel_threads):
596
+ rtol = 1e-3
597
+ atol = 1e-6
598
+ y0 = [1/3, 2/9]
599
+ for method in [RK23, RK45, DOP853, Radau, BDF, LSODA]:
600
+ if method is LSODA and num_parallel_threads > 1:
601
+ continue
602
+ for t_span in ([5, 9], [5, 1]):
603
+ res = solve_ivp(fun_rational, t_span, y0, rtol=rtol,
604
+ max_step=0.5, atol=atol, method=method,
605
+ dense_output=True)
606
+ assert_equal(res.t[0], t_span[0])
607
+ assert_equal(res.t[-1], t_span[-1])
608
+ assert_(np.all(np.abs(np.diff(res.t)) <= 0.5 + 1e-15))
609
+ assert_(res.t_events is None)
610
+ assert_(res.success)
611
+ assert_equal(res.status, 0)
612
+
613
+ y_true = sol_rational(res.t)
614
+ e = compute_error(res.y, y_true, rtol, atol)
615
+ assert_(np.all(e < 5))
616
+
617
+ tc = np.linspace(*t_span)
618
+ yc_true = sol_rational(tc)
619
+ yc = res.sol(tc)
620
+
621
+ e = compute_error(yc, yc_true, rtol, atol)
622
+ assert_(np.all(e < 5))
623
+
624
+ assert_allclose(res.sol(res.t), res.y, rtol=1e-15, atol=1e-15)
625
+
626
+ assert_raises(ValueError, method, fun_rational, t_span[0], y0,
627
+ t_span[1], max_step=-1)
628
+
629
+ if method is not LSODA:
630
+ solver = method(fun_rational, t_span[0], y0, t_span[1],
631
+ rtol=rtol, atol=atol, max_step=1e-20)
632
+ message = solver.step()
633
+ message = solver.step() # First step succeeds but second step fails.
634
+ assert_equal(solver.status, 'failed')
635
+ assert_("step size is less" in message)
636
+ assert_raises(RuntimeError, solver.step)
637
+
638
+
639
+ def test_first_step(num_parallel_threads):
640
+ rtol = 1e-3
641
+ atol = 1e-6
642
+ y0 = [1/3, 2/9]
643
+ first_step = 0.1
644
+ for method in [RK23, RK45, DOP853, Radau, BDF, LSODA]:
645
+ if method is LSODA and num_parallel_threads > 1:
646
+ continue
647
+ for t_span in ([5, 9], [5, 1]):
648
+ res = solve_ivp(fun_rational, t_span, y0, rtol=rtol,
649
+ max_step=0.5, atol=atol, method=method,
650
+ dense_output=True, first_step=first_step)
651
+
652
+ assert_equal(res.t[0], t_span[0])
653
+ assert_equal(res.t[-1], t_span[-1])
654
+ assert_allclose(first_step, np.abs(res.t[1] - 5))
655
+ assert_(res.t_events is None)
656
+ assert_(res.success)
657
+ assert_equal(res.status, 0)
658
+
659
+ y_true = sol_rational(res.t)
660
+ e = compute_error(res.y, y_true, rtol, atol)
661
+ assert_(np.all(e < 5))
662
+
663
+ tc = np.linspace(*t_span)
664
+ yc_true = sol_rational(tc)
665
+ yc = res.sol(tc)
666
+
667
+ e = compute_error(yc, yc_true, rtol, atol)
668
+ assert_(np.all(e < 5))
669
+
670
+ assert_allclose(res.sol(res.t), res.y, rtol=1e-15, atol=1e-15)
671
+
672
+ assert_raises(ValueError, method, fun_rational, t_span[0], y0,
673
+ t_span[1], first_step=-1)
674
+ assert_raises(ValueError, method, fun_rational, t_span[0], y0,
675
+ t_span[1], first_step=5)
676
+
677
+
678
+ def test_t_eval():
679
+ rtol = 1e-3
680
+ atol = 1e-6
681
+ y0 = [1/3, 2/9]
682
+ for t_span in ([5, 9], [5, 1]):
683
+ t_eval = np.linspace(t_span[0], t_span[1], 10)
684
+ res = solve_ivp(fun_rational, t_span, y0, rtol=rtol, atol=atol,
685
+ t_eval=t_eval)
686
+ assert_equal(res.t, t_eval)
687
+ assert_(res.t_events is None)
688
+ assert_(res.success)
689
+ assert_equal(res.status, 0)
690
+
691
+ y_true = sol_rational(res.t)
692
+ e = compute_error(res.y, y_true, rtol, atol)
693
+ assert_(np.all(e < 5))
694
+
695
+ t_eval = [5, 5.01, 7, 8, 8.01, 9]
696
+ res = solve_ivp(fun_rational, [5, 9], y0, rtol=rtol, atol=atol,
697
+ t_eval=t_eval)
698
+ assert_equal(res.t, t_eval)
699
+ assert_(res.t_events is None)
700
+ assert_(res.success)
701
+ assert_equal(res.status, 0)
702
+
703
+ y_true = sol_rational(res.t)
704
+ e = compute_error(res.y, y_true, rtol, atol)
705
+ assert_(np.all(e < 5))
706
+
707
+ t_eval = [5, 4.99, 3, 1.5, 1.1, 1.01, 1]
708
+ res = solve_ivp(fun_rational, [5, 1], y0, rtol=rtol, atol=atol,
709
+ t_eval=t_eval)
710
+ assert_equal(res.t, t_eval)
711
+ assert_(res.t_events is None)
712
+ assert_(res.success)
713
+ assert_equal(res.status, 0)
714
+
715
+ t_eval = [5.01, 7, 8, 8.01]
716
+ res = solve_ivp(fun_rational, [5, 9], y0, rtol=rtol, atol=atol,
717
+ t_eval=t_eval)
718
+ assert_equal(res.t, t_eval)
719
+ assert_(res.t_events is None)
720
+ assert_(res.success)
721
+ assert_equal(res.status, 0)
722
+
723
+ y_true = sol_rational(res.t)
724
+ e = compute_error(res.y, y_true, rtol, atol)
725
+ assert_(np.all(e < 5))
726
+
727
+ t_eval = [4.99, 3, 1.5, 1.1, 1.01]
728
+ res = solve_ivp(fun_rational, [5, 1], y0, rtol=rtol, atol=atol,
729
+ t_eval=t_eval)
730
+ assert_equal(res.t, t_eval)
731
+ assert_(res.t_events is None)
732
+ assert_(res.success)
733
+ assert_equal(res.status, 0)
734
+
735
+ t_eval = [4, 6]
736
+ assert_raises(ValueError, solve_ivp, fun_rational, [5, 9], y0,
737
+ rtol=rtol, atol=atol, t_eval=t_eval)
738
+
739
+
740
+ def test_t_eval_dense_output():
741
+ rtol = 1e-3
742
+ atol = 1e-6
743
+ y0 = [1/3, 2/9]
744
+ t_span = [5, 9]
745
+ t_eval = np.linspace(t_span[0], t_span[1], 10)
746
+ res = solve_ivp(fun_rational, t_span, y0, rtol=rtol, atol=atol,
747
+ t_eval=t_eval)
748
+ res_d = solve_ivp(fun_rational, t_span, y0, rtol=rtol, atol=atol,
749
+ t_eval=t_eval, dense_output=True)
750
+ assert_equal(res.t, t_eval)
751
+ assert_(res.t_events is None)
752
+ assert_(res.success)
753
+ assert_equal(res.status, 0)
754
+
755
+ assert_equal(res.t, res_d.t)
756
+ assert_equal(res.y, res_d.y)
757
+ assert_(res_d.t_events is None)
758
+ assert_(res_d.success)
759
+ assert_equal(res_d.status, 0)
760
+
761
+ # if t and y are equal only test values for one case
762
+ y_true = sol_rational(res.t)
763
+ e = compute_error(res.y, y_true, rtol, atol)
764
+ assert_(np.all(e < 5))
765
+
766
+
767
+ @pytest.mark.thread_unsafe
768
+ def test_t_eval_early_event():
769
+ def early_event(t, y):
770
+ return t - 7
771
+
772
+ early_event.terminal = True
773
+
774
+ rtol = 1e-3
775
+ atol = 1e-6
776
+ y0 = [1/3, 2/9]
777
+ t_span = [5, 9]
778
+ t_eval = np.linspace(7.5, 9, 16)
779
+ for method in ['RK23', 'RK45', 'DOP853', 'Radau', 'BDF', 'LSODA']:
780
+ with suppress_warnings() as sup:
781
+ sup.filter(UserWarning,
782
+ "The following arguments have no effect for a chosen "
783
+ "solver: `jac`")
784
+ res = solve_ivp(fun_rational, t_span, y0, rtol=rtol, atol=atol,
785
+ method=method, t_eval=t_eval, events=early_event,
786
+ jac=jac_rational)
787
+ assert res.success
788
+ assert res.message == 'A termination event occurred.'
789
+ assert res.status == 1
790
+ assert not res.t and not res.y
791
+ assert len(res.t_events) == 1
792
+ assert res.t_events[0].size == 1
793
+ assert res.t_events[0][0] == 7
794
+
795
+
796
+ def test_event_dense_output_LSODA(num_parallel_threads):
797
+ if num_parallel_threads > 1:
798
+ pytest.skip('LSODA does not allow for concurrent execution')
799
+
800
+ def event_lsoda(t, y):
801
+ return y[0] - 2.02e-5
802
+
803
+ rtol = 1e-3
804
+ atol = 1e-6
805
+ y0 = [0.05]
806
+ t_span = [-2, 2]
807
+ first_step = 1e-3
808
+ res = solve_ivp(
809
+ fun_event_dense_output_LSODA,
810
+ t_span,
811
+ y0,
812
+ method="LSODA",
813
+ dense_output=True,
814
+ events=event_lsoda,
815
+ first_step=first_step,
816
+ max_step=1,
817
+ rtol=rtol,
818
+ atol=atol,
819
+ jac=jac_event_dense_output_LSODA,
820
+ )
821
+
822
+ assert_equal(res.t[0], t_span[0])
823
+ assert_equal(res.t[-1], t_span[-1])
824
+ assert_allclose(first_step, np.abs(res.t[1] - t_span[0]))
825
+ assert res.success
826
+ assert_equal(res.status, 0)
827
+
828
+ y_true = sol_event_dense_output_LSODA(res.t)
829
+ e = compute_error(res.y, y_true, rtol, atol)
830
+ assert_array_less(e, 5)
831
+
832
+ tc = np.linspace(*t_span)
833
+ yc_true = sol_event_dense_output_LSODA(tc)
834
+ yc = res.sol(tc)
835
+ e = compute_error(yc, yc_true, rtol, atol)
836
+ assert_array_less(e, 5)
837
+
838
+ assert_allclose(res.sol(res.t), res.y, rtol=1e-15, atol=1e-15)
839
+
840
+
841
+ def test_no_integration():
842
+ for method in ['RK23', 'RK45', 'DOP853', 'Radau', 'BDF', 'LSODA']:
843
+ sol = solve_ivp(lambda t, y: -y, [4, 4], [2, 3],
844
+ method=method, dense_output=True)
845
+ assert_equal(sol.sol(4), [2, 3])
846
+ assert_equal(sol.sol([4, 5, 6]), [[2, 2, 2], [3, 3, 3]])
847
+
848
+
849
+ def test_no_integration_class():
850
+ for method in [RK23, RK45, DOP853, Radau, BDF, LSODA]:
851
+ solver = method(lambda t, y: -y, 0.0, [10.0, 0.0], 0.0)
852
+ solver.step()
853
+ assert_equal(solver.status, 'finished')
854
+ sol = solver.dense_output()
855
+ assert_equal(sol(0.0), [10.0, 0.0])
856
+ assert_equal(sol([0, 1, 2]), [[10, 10, 10], [0, 0, 0]])
857
+
858
+ solver = method(lambda t, y: -y, 0.0, [], np.inf)
859
+ solver.step()
860
+ assert_equal(solver.status, 'finished')
861
+ sol = solver.dense_output()
862
+ assert_equal(sol(100.0), [])
863
+ assert_equal(sol([0, 1, 2]), np.empty((0, 3)))
864
+
865
+
866
+ def test_empty():
867
+ def fun(t, y):
868
+ return np.zeros((0,))
869
+
870
+ y0 = np.zeros((0,))
871
+
872
+ for method in ['RK23', 'RK45', 'DOP853', 'Radau', 'BDF', 'LSODA']:
873
+ sol = assert_no_warnings(solve_ivp, fun, [0, 10], y0,
874
+ method=method, dense_output=True)
875
+ assert_equal(sol.sol(10), np.zeros((0,)))
876
+ assert_equal(sol.sol([1, 2, 3]), np.zeros((0, 3)))
877
+
878
+ for method in ['RK23', 'RK45', 'DOP853', 'Radau', 'BDF', 'LSODA']:
879
+ sol = assert_no_warnings(solve_ivp, fun, [0, np.inf], y0,
880
+ method=method, dense_output=True)
881
+ assert_equal(sol.sol(10), np.zeros((0,)))
882
+ assert_equal(sol.sol([1, 2, 3]), np.zeros((0, 3)))
883
+
884
+
885
+ def test_ConstantDenseOutput():
886
+ sol = ConstantDenseOutput(0, 1, np.array([1, 2]))
887
+ assert_allclose(sol(1.5), [1, 2])
888
+ assert_allclose(sol([1, 1.5, 2]), [[1, 1, 1], [2, 2, 2]])
889
+
890
+ sol = ConstantDenseOutput(0, 1, np.array([]))
891
+ assert_allclose(sol(1.5), np.empty(0))
892
+ assert_allclose(sol([1, 1.5, 2]), np.empty((0, 3)))
893
+
894
+
895
+ def test_classes():
896
+ y0 = [1 / 3, 2 / 9]
897
+ for cls in [RK23, RK45, DOP853, Radau, BDF, LSODA]:
898
+ solver = cls(fun_rational, 5, y0, np.inf)
899
+ assert_equal(solver.n, 2)
900
+ assert_equal(solver.status, 'running')
901
+ assert_equal(solver.t_bound, np.inf)
902
+ assert_equal(solver.direction, 1)
903
+ assert_equal(solver.t, 5)
904
+ assert_equal(solver.y, y0)
905
+ assert_(solver.step_size is None)
906
+ if cls is not LSODA:
907
+ assert_(solver.nfev > 0)
908
+ assert_(solver.njev >= 0)
909
+ assert_equal(solver.nlu, 0)
910
+ else:
911
+ assert_equal(solver.nfev, 0)
912
+ assert_equal(solver.njev, 0)
913
+ assert_equal(solver.nlu, 0)
914
+
915
+ assert_raises(RuntimeError, solver.dense_output)
916
+
917
+ message = solver.step()
918
+ assert_equal(solver.status, 'running')
919
+ assert_equal(message, None)
920
+ assert_equal(solver.n, 2)
921
+ assert_equal(solver.t_bound, np.inf)
922
+ assert_equal(solver.direction, 1)
923
+ assert_(solver.t > 5)
924
+ assert_(not np.all(np.equal(solver.y, y0)))
925
+ assert_(solver.step_size > 0)
926
+ assert_(solver.nfev > 0)
927
+ assert_(solver.njev >= 0)
928
+ assert_(solver.nlu >= 0)
929
+ sol = solver.dense_output()
930
+ assert_allclose(sol(5), y0, rtol=1e-15, atol=0)
931
+
932
+
933
+ def test_OdeSolution():
934
+ ts = np.array([0, 2, 5], dtype=float)
935
+ s1 = ConstantDenseOutput(ts[0], ts[1], np.array([-1]))
936
+ s2 = ConstantDenseOutput(ts[1], ts[2], np.array([1]))
937
+
938
+ sol = OdeSolution(ts, [s1, s2])
939
+
940
+ assert_equal(sol(-1), [-1])
941
+ assert_equal(sol(1), [-1])
942
+ assert_equal(sol(2), [-1])
943
+ assert_equal(sol(3), [1])
944
+ assert_equal(sol(5), [1])
945
+ assert_equal(sol(6), [1])
946
+
947
+ assert_equal(sol([0, 6, -2, 1.5, 4.5, 2.5, 5, 5.5, 2]),
948
+ np.array([[-1, 1, -1, -1, 1, 1, 1, 1, -1]]))
949
+
950
+ ts = np.array([10, 4, -3])
951
+ s1 = ConstantDenseOutput(ts[0], ts[1], np.array([-1]))
952
+ s2 = ConstantDenseOutput(ts[1], ts[2], np.array([1]))
953
+
954
+ sol = OdeSolution(ts, [s1, s2])
955
+ assert_equal(sol(11), [-1])
956
+ assert_equal(sol(10), [-1])
957
+ assert_equal(sol(5), [-1])
958
+ assert_equal(sol(4), [-1])
959
+ assert_equal(sol(0), [1])
960
+ assert_equal(sol(-3), [1])
961
+ assert_equal(sol(-4), [1])
962
+
963
+ assert_equal(sol([12, -5, 10, -3, 6, 1, 4]),
964
+ np.array([[-1, 1, -1, 1, -1, 1, -1]]))
965
+
966
+ ts = np.array([1, 1])
967
+ s = ConstantDenseOutput(1, 1, np.array([10]))
968
+ sol = OdeSolution(ts, [s])
969
+ assert_equal(sol(0), [10])
970
+ assert_equal(sol(1), [10])
971
+ assert_equal(sol(2), [10])
972
+
973
+ assert_equal(sol([2, 1, 0]), np.array([[10, 10, 10]]))
974
+
975
+
976
+ def test_num_jac():
977
+ def fun(t, y):
978
+ return np.vstack([
979
+ -0.04 * y[0] + 1e4 * y[1] * y[2],
980
+ 0.04 * y[0] - 1e4 * y[1] * y[2] - 3e7 * y[1] ** 2,
981
+ 3e7 * y[1] ** 2
982
+ ])
983
+
984
+ def jac(t, y):
985
+ return np.array([
986
+ [-0.04, 1e4 * y[2], 1e4 * y[1]],
987
+ [0.04, -1e4 * y[2] - 6e7 * y[1], -1e4 * y[1]],
988
+ [0, 6e7 * y[1], 0]
989
+ ])
990
+
991
+ t = 1
992
+ y = np.array([1, 0, 0])
993
+ J_true = jac(t, y)
994
+ threshold = 1e-5
995
+ f = fun(t, y).ravel()
996
+
997
+ J_num, factor = num_jac(fun, t, y, f, threshold, None)
998
+ assert_allclose(J_num, J_true, rtol=1e-5, atol=1e-5)
999
+
1000
+ J_num, factor = num_jac(fun, t, y, f, threshold, factor)
1001
+ assert_allclose(J_num, J_true, rtol=1e-5, atol=1e-5)
1002
+
1003
+
1004
+ def test_num_jac_sparse():
1005
+ def fun(t, y):
1006
+ e = y[1:]**3 - y[:-1]**2
1007
+ z = np.zeros(y.shape[1])
1008
+ return np.vstack((z, 3 * e)) + np.vstack((2 * e, z))
1009
+
1010
+ def structure(n):
1011
+ A = np.zeros((n, n), dtype=int)
1012
+ A[0, 0] = 1
1013
+ A[0, 1] = 1
1014
+ for i in range(1, n - 1):
1015
+ A[i, i - 1: i + 2] = 1
1016
+ A[-1, -1] = 1
1017
+ A[-1, -2] = 1
1018
+
1019
+ return A
1020
+
1021
+ np.random.seed(0)
1022
+ n = 20
1023
+ y = np.random.randn(n)
1024
+ A = structure(n)
1025
+ groups = group_columns(A)
1026
+
1027
+ f = fun(0, y[:, None]).ravel()
1028
+
1029
+ # Compare dense and sparse results, assuming that dense implementation
1030
+ # is correct (as it is straightforward).
1031
+ J_num_sparse, factor_sparse = num_jac(fun, 0, y.ravel(), f, 1e-8, None,
1032
+ sparsity=(A, groups))
1033
+ J_num_dense, factor_dense = num_jac(fun, 0, y.ravel(), f, 1e-8, None)
1034
+ assert_allclose(J_num_dense, J_num_sparse.toarray(),
1035
+ rtol=1e-12, atol=1e-14)
1036
+ assert_allclose(factor_dense, factor_sparse, rtol=1e-12, atol=1e-14)
1037
+
1038
+ # Take small factors to trigger their recomputing inside.
1039
+ factor = np.random.uniform(0, 1e-12, size=n)
1040
+ J_num_sparse, factor_sparse = num_jac(fun, 0, y.ravel(), f, 1e-8, factor,
1041
+ sparsity=(A, groups))
1042
+ J_num_dense, factor_dense = num_jac(fun, 0, y.ravel(), f, 1e-8, factor)
1043
+
1044
+ assert_allclose(J_num_dense, J_num_sparse.toarray(),
1045
+ rtol=1e-12, atol=1e-14)
1046
+ assert_allclose(factor_dense, factor_sparse, rtol=1e-12, atol=1e-14)
1047
+
1048
+
1049
+ def test_args():
1050
+
1051
+ # sys3 is actually two decoupled systems. (x, y) form a
1052
+ # linear oscillator, while z is a nonlinear first order
1053
+ # system with equilibria at z=0 and z=1. If k > 0, z=1
1054
+ # is stable and z=0 is unstable.
1055
+
1056
+ def sys3(t, w, omega, k, zfinal):
1057
+ x, y, z = w
1058
+ return [-omega*y, omega*x, k*z*(1 - z)]
1059
+
1060
+ def sys3_jac(t, w, omega, k, zfinal):
1061
+ x, y, z = w
1062
+ J = np.array([[0, -omega, 0],
1063
+ [omega, 0, 0],
1064
+ [0, 0, k*(1 - 2*z)]])
1065
+ return J
1066
+
1067
+ def sys3_x0decreasing(t, w, omega, k, zfinal):
1068
+ x, y, z = w
1069
+ return x
1070
+
1071
+ def sys3_y0increasing(t, w, omega, k, zfinal):
1072
+ x, y, z = w
1073
+ return y
1074
+
1075
+ def sys3_zfinal(t, w, omega, k, zfinal):
1076
+ x, y, z = w
1077
+ return z - zfinal
1078
+
1079
+ # Set the event flags for the event functions.
1080
+ sys3_x0decreasing.direction = -1
1081
+ sys3_y0increasing.direction = 1
1082
+ sys3_zfinal.terminal = True
1083
+
1084
+ omega = 2
1085
+ k = 4
1086
+
1087
+ tfinal = 5
1088
+ zfinal = 0.99
1089
+ # Find z0 such that when z(0) = z0, z(tfinal) = zfinal.
1090
+ # The condition z(tfinal) = zfinal is the terminal event.
1091
+ z0 = np.exp(-k*tfinal)/((1 - zfinal)/zfinal + np.exp(-k*tfinal))
1092
+
1093
+ w0 = [0, -1, z0]
1094
+
1095
+ # Provide the jac argument and use the Radau method to ensure that the use
1096
+ # of the Jacobian function is exercised.
1097
+ # If event handling is working, the solution will stop at tfinal, not tend.
1098
+ tend = 2*tfinal
1099
+ sol = solve_ivp(sys3, [0, tend], w0,
1100
+ events=[sys3_x0decreasing, sys3_y0increasing, sys3_zfinal],
1101
+ dense_output=True, args=(omega, k, zfinal),
1102
+ method='Radau', jac=sys3_jac,
1103
+ rtol=1e-10, atol=1e-13)
1104
+
1105
+ # Check that we got the expected events at the expected times.
1106
+ x0events_t = sol.t_events[0]
1107
+ y0events_t = sol.t_events[1]
1108
+ zfinalevents_t = sol.t_events[2]
1109
+ assert_allclose(x0events_t, [0.5*np.pi, 1.5*np.pi])
1110
+ assert_allclose(y0events_t, [0.25*np.pi, 1.25*np.pi])
1111
+ assert_allclose(zfinalevents_t, [tfinal])
1112
+
1113
+ # Check that the solution agrees with the known exact solution.
1114
+ t = np.linspace(0, zfinalevents_t[0], 250)
1115
+ w = sol.sol(t)
1116
+ assert_allclose(w[0], np.sin(omega*t), rtol=1e-9, atol=1e-12)
1117
+ assert_allclose(w[1], -np.cos(omega*t), rtol=1e-9, atol=1e-12)
1118
+ assert_allclose(w[2], 1/(((1 - z0)/z0)*np.exp(-k*t) + 1),
1119
+ rtol=1e-9, atol=1e-12)
1120
+
1121
+ # Check that the state variables have the expected values at the events.
1122
+ x0events = sol.sol(x0events_t)
1123
+ y0events = sol.sol(y0events_t)
1124
+ zfinalevents = sol.sol(zfinalevents_t)
1125
+ assert_allclose(x0events[0], np.zeros_like(x0events[0]), atol=5e-14)
1126
+ assert_allclose(x0events[1], np.ones_like(x0events[1]))
1127
+ assert_allclose(y0events[0], np.ones_like(y0events[0]))
1128
+ assert_allclose(y0events[1], np.zeros_like(y0events[1]), atol=5e-14)
1129
+ assert_allclose(zfinalevents[2], [zfinal])
1130
+
1131
+
1132
+ @pytest.mark.thread_unsafe
1133
+ def test_array_rtol():
1134
+ # solve_ivp had a bug with array_like `rtol`; see gh-15482
1135
+ # check that it's fixed
1136
+ def f(t, y):
1137
+ return y[0], y[1]
1138
+
1139
+ # no warning (or error) when `rtol` is array_like
1140
+ sol = solve_ivp(f, (0, 1), [1., 1.], rtol=[1e-1, 1e-1])
1141
+ err1 = np.abs(np.linalg.norm(sol.y[:, -1] - np.exp(1)))
1142
+
1143
+ # warning when an element of `rtol` is too small
1144
+ with pytest.warns(UserWarning, match="At least one element..."):
1145
+ sol = solve_ivp(f, (0, 1), [1., 1.], rtol=[1e-1, 1e-16])
1146
+ err2 = np.abs(np.linalg.norm(sol.y[:, -1] - np.exp(1)))
1147
+
1148
+ # tighter rtol improves the error
1149
+ assert err2 < err1
1150
+
1151
+
1152
+ @pytest.mark.parametrize('method', ['RK23', 'RK45', 'DOP853', 'Radau', 'BDF', 'LSODA'])
1153
+ def test_integration_zero_rhs(method, num_parallel_threads):
1154
+ if method == 'LSODA' and num_parallel_threads > 1:
1155
+ pytest.skip(reason='LSODA does not allow for concurrent execution')
1156
+
1157
+ result = solve_ivp(fun_zero, [0, 10], np.ones(3), method=method)
1158
+ assert_(result.success)
1159
+ assert_equal(result.status, 0)
1160
+ assert_allclose(result.y, 1.0, rtol=1e-15)
1161
+
1162
+
1163
+ def test_args_single_value():
1164
+ def fun_with_arg(t, y, a):
1165
+ return a*y
1166
+
1167
+ message = "Supplied 'args' cannot be unpacked."
1168
+ with pytest.raises(TypeError, match=message):
1169
+ solve_ivp(fun_with_arg, (0, 0.1), [1], args=-1)
1170
+
1171
+ sol = solve_ivp(fun_with_arg, (0, 0.1), [1], args=(-1,))
1172
+ assert_allclose(sol.y[0, -1], np.exp(-0.1))
1173
+
1174
+
1175
+ @pytest.mark.parametrize("f0_fill", [np.nan, np.inf])
1176
+ def test_initial_state_finiteness(f0_fill):
1177
+ # regression test for gh-17846
1178
+ msg = "All components of the initial state `y0` must be finite."
1179
+ with pytest.raises(ValueError, match=msg):
1180
+ solve_ivp(fun_zero, [0, 10], np.full(3, f0_fill))
1181
+
1182
+
1183
+ @pytest.mark.parametrize('method', ['RK23', 'RK45', 'DOP853', 'Radau', 'BDF'])
1184
+ def test_zero_interval(method):
1185
+ # Case where upper and lower limits of integration are the same
1186
+ # Result of integration should match initial state.
1187
+ # f[y(t)] = 2y(t)
1188
+ def f(t, y):
1189
+ return 2 * y
1190
+ res = solve_ivp(f, (0.0, 0.0), np.array([1.0]), method=method)
1191
+ assert res.success
1192
+ assert_allclose(res.y[0, -1], 1.0)
1193
+
1194
+
1195
+ @pytest.mark.parametrize('method', ['RK23', 'RK45', 'DOP853', 'Radau', 'BDF'])
1196
+ def test_tbound_respected_small_interval(method):
1197
+ """Regression test for gh-17341"""
1198
+ SMALL = 1e-4
1199
+
1200
+ # f[y(t)] = 2y(t) on t in [0,SMALL]
1201
+ # undefined otherwise
1202
+ def f(t, y):
1203
+ if t > SMALL:
1204
+ raise ValueError("Function was evaluated outside interval")
1205
+ return 2 * y
1206
+ res = solve_ivp(f, (0.0, SMALL), np.array([1]), method=method)
1207
+ assert res.success
1208
+
1209
+
1210
+ @pytest.mark.parametrize('method', ['RK23', 'RK45', 'DOP853', 'Radau', 'BDF'])
1211
+ def test_tbound_respected_larger_interval(method):
1212
+ """Regression test for gh-8848"""
1213
+ def V(r):
1214
+ return -11/r + 10 * r / (0.05 + r**2)
1215
+
1216
+ def func(t, p):
1217
+ if t < -17 or t > 2:
1218
+ raise ValueError("Function was evaluated outside interval")
1219
+ P = p[0]
1220
+ Q = p[1]
1221
+ r = np.exp(t)
1222
+ dPdr = r * Q
1223
+ dQdr = -2.0 * r * ((-0.2 - V(r)) * P + 1 / r * Q)
1224
+ return np.array([dPdr, dQdr])
1225
+
1226
+ result = solve_ivp(func,
1227
+ (-17, 2),
1228
+ y0=np.array([1, -11]),
1229
+ max_step=0.03,
1230
+ vectorized=False,
1231
+ t_eval=None,
1232
+ atol=1e-8,
1233
+ rtol=1e-5)
1234
+ assert result.success
1235
+
1236
+
1237
+ @pytest.mark.parametrize('method', ['RK23', 'RK45', 'DOP853', 'Radau', 'BDF'])
1238
+ def test_tbound_respected_oscillator(method):
1239
+ "Regression test for gh-9198"
1240
+ def reactions_func(t, y):
1241
+ if (t > 205):
1242
+ raise ValueError("Called outside interval")
1243
+ yprime = np.array([1.73307544e-02,
1244
+ 6.49376470e-06,
1245
+ 0.00000000e+00,
1246
+ 0.00000000e+00])
1247
+ return yprime
1248
+
1249
+ def run_sim2(t_end, n_timepoints=10, shortest_delay_line=10000000):
1250
+ init_state = np.array([134.08298555, 138.82348612, 100., 0.])
1251
+ t0 = 100.0
1252
+ t1 = 200.0
1253
+ return solve_ivp(reactions_func,
1254
+ (t0, t1),
1255
+ init_state.copy(),
1256
+ dense_output=True,
1257
+ max_step=t1 - t0)
1258
+ result = run_sim2(1000, 100, 100)
1259
+ assert result.success
1260
+
1261
+
1262
+ def test_inital_maxstep():
1263
+ """Verify that select_inital_step respects max_step"""
1264
+ rtol = 1e-3
1265
+ atol = 1e-6
1266
+ y0 = np.array([1/3, 2/9])
1267
+ for (t0, t_bound) in ((5, 9), (5, 1)):
1268
+ for method_order in [RK23.error_estimator_order,
1269
+ RK45.error_estimator_order,
1270
+ DOP853.error_estimator_order,
1271
+ 3, #RADAU
1272
+ 1 #BDF
1273
+ ]:
1274
+ step_no_max = select_initial_step(fun_rational, t0, y0, t_bound,
1275
+ np.inf,
1276
+ fun_rational(t0,y0),
1277
+ np.sign(t_bound - t0),
1278
+ method_order,
1279
+ rtol, atol)
1280
+ max_step = step_no_max/2
1281
+ step_with_max = select_initial_step(fun_rational, t0, y0, t_bound,
1282
+ max_step,
1283
+ fun_rational(t0, y0),
1284
+ np.sign(t_bound - t0),
1285
+ method_order,
1286
+ rtol, atol)
1287
+ assert_equal(max_step, step_with_max)