scipy 1.16.2__cp312-cp312-win_arm64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scipy/__config__.py +161 -0
- scipy/__init__.py +150 -0
- scipy/_cyutility.cp312-win_arm64.lib +0 -0
- scipy/_cyutility.cp312-win_arm64.pyd +0 -0
- scipy/_distributor_init.py +18 -0
- scipy/_lib/__init__.py +14 -0
- scipy/_lib/_array_api.py +931 -0
- scipy/_lib/_array_api_compat_vendor.py +9 -0
- scipy/_lib/_array_api_no_0d.py +103 -0
- scipy/_lib/_bunch.py +229 -0
- scipy/_lib/_ccallback.py +251 -0
- scipy/_lib/_ccallback_c.cp312-win_arm64.lib +0 -0
- scipy/_lib/_ccallback_c.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_disjoint_set.py +254 -0
- scipy/_lib/_docscrape.py +761 -0
- scipy/_lib/_elementwise_iterative_method.py +346 -0
- scipy/_lib/_fpumode.cp312-win_arm64.lib +0 -0
- scipy/_lib/_fpumode.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_gcutils.py +105 -0
- scipy/_lib/_pep440.py +487 -0
- scipy/_lib/_sparse.py +41 -0
- scipy/_lib/_test_ccallback.cp312-win_arm64.lib +0 -0
- scipy/_lib/_test_ccallback.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_call.cp312-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_call.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_def.cp312-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_def.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_testutils.py +373 -0
- scipy/_lib/_threadsafety.py +58 -0
- scipy/_lib/_tmpdirs.py +86 -0
- scipy/_lib/_uarray/LICENSE +29 -0
- scipy/_lib/_uarray/__init__.py +116 -0
- scipy/_lib/_uarray/_backend.py +707 -0
- scipy/_lib/_uarray/_uarray.cp312-win_arm64.lib +0 -0
- scipy/_lib/_uarray/_uarray.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_util.py +1283 -0
- scipy/_lib/array_api_compat/__init__.py +22 -0
- scipy/_lib/array_api_compat/_internal.py +59 -0
- scipy/_lib/array_api_compat/common/__init__.py +1 -0
- scipy/_lib/array_api_compat/common/_aliases.py +727 -0
- scipy/_lib/array_api_compat/common/_fft.py +213 -0
- scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
- scipy/_lib/array_api_compat/common/_linalg.py +232 -0
- scipy/_lib/array_api_compat/common/_typing.py +192 -0
- scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
- scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
- scipy/_lib/array_api_compat/cupy/_info.py +336 -0
- scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
- scipy/_lib/array_api_compat/cupy/fft.py +36 -0
- scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
- scipy/_lib/array_api_compat/dask/__init__.py +0 -0
- scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
- scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
- scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
- scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
- scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
- scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
- scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
- scipy/_lib/array_api_compat/numpy/_info.py +366 -0
- scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
- scipy/_lib/array_api_compat/numpy/fft.py +35 -0
- scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
- scipy/_lib/array_api_compat/torch/__init__.py +22 -0
- scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
- scipy/_lib/array_api_compat/torch/_info.py +369 -0
- scipy/_lib/array_api_compat/torch/_typing.py +3 -0
- scipy/_lib/array_api_compat/torch/fft.py +85 -0
- scipy/_lib/array_api_compat/torch/linalg.py +121 -0
- scipy/_lib/array_api_extra/__init__.py +38 -0
- scipy/_lib/array_api_extra/_delegation.py +171 -0
- scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_at.py +463 -0
- scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
- scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
- scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
- scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
- scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
- scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
- scipy/_lib/array_api_extra/testing.py +359 -0
- scipy/_lib/cobyqa/__init__.py +20 -0
- scipy/_lib/cobyqa/framework.py +1240 -0
- scipy/_lib/cobyqa/main.py +1506 -0
- scipy/_lib/cobyqa/models.py +1529 -0
- scipy/_lib/cobyqa/problem.py +1296 -0
- scipy/_lib/cobyqa/settings.py +132 -0
- scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
- scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
- scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
- scipy/_lib/cobyqa/utils/__init__.py +18 -0
- scipy/_lib/cobyqa/utils/exceptions.py +22 -0
- scipy/_lib/cobyqa/utils/math.py +77 -0
- scipy/_lib/cobyqa/utils/versions.py +67 -0
- scipy/_lib/decorator.py +399 -0
- scipy/_lib/deprecation.py +274 -0
- scipy/_lib/doccer.py +366 -0
- scipy/_lib/messagestream.cp312-win_arm64.lib +0 -0
- scipy/_lib/messagestream.cp312-win_arm64.pyd +0 -0
- scipy/_lib/pyprima/__init__.py +212 -0
- scipy/_lib/pyprima/cobyla/__init__.py +0 -0
- scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
- scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
- scipy/_lib/pyprima/cobyla/geometry.py +226 -0
- scipy/_lib/pyprima/cobyla/initialize.py +215 -0
- scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
- scipy/_lib/pyprima/cobyla/update.py +289 -0
- scipy/_lib/pyprima/common/__init__.py +0 -0
- scipy/_lib/pyprima/common/_bounds.py +34 -0
- scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
- scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
- scipy/_lib/pyprima/common/_project.py +173 -0
- scipy/_lib/pyprima/common/checkbreak.py +93 -0
- scipy/_lib/pyprima/common/consts.py +47 -0
- scipy/_lib/pyprima/common/evaluate.py +99 -0
- scipy/_lib/pyprima/common/history.py +38 -0
- scipy/_lib/pyprima/common/infos.py +30 -0
- scipy/_lib/pyprima/common/linalg.py +435 -0
- scipy/_lib/pyprima/common/message.py +290 -0
- scipy/_lib/pyprima/common/powalg.py +131 -0
- scipy/_lib/pyprima/common/preproc.py +277 -0
- scipy/_lib/pyprima/common/present.py +5 -0
- scipy/_lib/pyprima/common/ratio.py +54 -0
- scipy/_lib/pyprima/common/redrho.py +47 -0
- scipy/_lib/pyprima/common/selectx.py +296 -0
- scipy/_lib/tests/__init__.py +0 -0
- scipy/_lib/tests/test__gcutils.py +110 -0
- scipy/_lib/tests/test__pep440.py +67 -0
- scipy/_lib/tests/test__testutils.py +32 -0
- scipy/_lib/tests/test__threadsafety.py +51 -0
- scipy/_lib/tests/test__util.py +641 -0
- scipy/_lib/tests/test_array_api.py +322 -0
- scipy/_lib/tests/test_bunch.py +169 -0
- scipy/_lib/tests/test_ccallback.py +196 -0
- scipy/_lib/tests/test_config.py +45 -0
- scipy/_lib/tests/test_deprecation.py +10 -0
- scipy/_lib/tests/test_doccer.py +143 -0
- scipy/_lib/tests/test_import_cycles.py +18 -0
- scipy/_lib/tests/test_public_api.py +482 -0
- scipy/_lib/tests/test_scipy_version.py +28 -0
- scipy/_lib/tests/test_tmpdirs.py +48 -0
- scipy/_lib/tests/test_warnings.py +137 -0
- scipy/_lib/uarray.py +31 -0
- scipy/cluster/__init__.py +31 -0
- scipy/cluster/_hierarchy.cp312-win_arm64.lib +0 -0
- scipy/cluster/_hierarchy.cp312-win_arm64.pyd +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp312-win_arm64.lib +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp312-win_arm64.pyd +0 -0
- scipy/cluster/_vq.cp312-win_arm64.lib +0 -0
- scipy/cluster/_vq.cp312-win_arm64.pyd +0 -0
- scipy/cluster/hierarchy.py +4348 -0
- scipy/cluster/tests/__init__.py +0 -0
- scipy/cluster/tests/hierarchy_test_data.py +145 -0
- scipy/cluster/tests/test_disjoint_set.py +202 -0
- scipy/cluster/tests/test_hierarchy.py +1238 -0
- scipy/cluster/tests/test_vq.py +434 -0
- scipy/cluster/vq.py +832 -0
- scipy/conftest.py +683 -0
- scipy/constants/__init__.py +358 -0
- scipy/constants/_codata.py +2266 -0
- scipy/constants/_constants.py +369 -0
- scipy/constants/codata.py +21 -0
- scipy/constants/constants.py +53 -0
- scipy/constants/tests/__init__.py +0 -0
- scipy/constants/tests/test_codata.py +78 -0
- scipy/constants/tests/test_constants.py +83 -0
- scipy/datasets/__init__.py +90 -0
- scipy/datasets/_download_all.py +71 -0
- scipy/datasets/_fetchers.py +225 -0
- scipy/datasets/_registry.py +26 -0
- scipy/datasets/_utils.py +81 -0
- scipy/datasets/tests/__init__.py +0 -0
- scipy/datasets/tests/test_data.py +128 -0
- scipy/differentiate/__init__.py +27 -0
- scipy/differentiate/_differentiate.py +1129 -0
- scipy/differentiate/tests/__init__.py +0 -0
- scipy/differentiate/tests/test_differentiate.py +694 -0
- scipy/fft/__init__.py +114 -0
- scipy/fft/_backend.py +196 -0
- scipy/fft/_basic.py +1650 -0
- scipy/fft/_basic_backend.py +197 -0
- scipy/fft/_debug_backends.py +22 -0
- scipy/fft/_fftlog.py +223 -0
- scipy/fft/_fftlog_backend.py +200 -0
- scipy/fft/_helper.py +348 -0
- scipy/fft/_pocketfft/LICENSE.md +25 -0
- scipy/fft/_pocketfft/__init__.py +9 -0
- scipy/fft/_pocketfft/basic.py +251 -0
- scipy/fft/_pocketfft/helper.py +249 -0
- scipy/fft/_pocketfft/pypocketfft.cp312-win_arm64.lib +0 -0
- scipy/fft/_pocketfft/pypocketfft.cp312-win_arm64.pyd +0 -0
- scipy/fft/_pocketfft/realtransforms.py +109 -0
- scipy/fft/_pocketfft/tests/__init__.py +0 -0
- scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
- scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
- scipy/fft/_realtransforms.py +706 -0
- scipy/fft/_realtransforms_backend.py +63 -0
- scipy/fft/tests/__init__.py +0 -0
- scipy/fft/tests/mock_backend.py +96 -0
- scipy/fft/tests/test_backend.py +98 -0
- scipy/fft/tests/test_basic.py +504 -0
- scipy/fft/tests/test_fftlog.py +215 -0
- scipy/fft/tests/test_helper.py +558 -0
- scipy/fft/tests/test_multithreading.py +84 -0
- scipy/fft/tests/test_real_transforms.py +247 -0
- scipy/fftpack/__init__.py +103 -0
- scipy/fftpack/_basic.py +428 -0
- scipy/fftpack/_helper.py +115 -0
- scipy/fftpack/_pseudo_diffs.py +554 -0
- scipy/fftpack/_realtransforms.py +598 -0
- scipy/fftpack/basic.py +20 -0
- scipy/fftpack/convolve.cp312-win_arm64.lib +0 -0
- scipy/fftpack/convolve.cp312-win_arm64.pyd +0 -0
- scipy/fftpack/helper.py +19 -0
- scipy/fftpack/pseudo_diffs.py +22 -0
- scipy/fftpack/realtransforms.py +19 -0
- scipy/fftpack/tests/__init__.py +0 -0
- scipy/fftpack/tests/fftw_double_ref.npz +0 -0
- scipy/fftpack/tests/fftw_longdouble_ref.npz +0 -0
- scipy/fftpack/tests/fftw_single_ref.npz +0 -0
- scipy/fftpack/tests/test.npz +0 -0
- scipy/fftpack/tests/test_basic.py +877 -0
- scipy/fftpack/tests/test_helper.py +54 -0
- scipy/fftpack/tests/test_import.py +33 -0
- scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
- scipy/fftpack/tests/test_real_transforms.py +836 -0
- scipy/integrate/__init__.py +122 -0
- scipy/integrate/_bvp.py +1160 -0
- scipy/integrate/_cubature.py +729 -0
- scipy/integrate/_dop.cp312-win_arm64.lib +0 -0
- scipy/integrate/_dop.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_ivp/__init__.py +8 -0
- scipy/integrate/_ivp/base.py +290 -0
- scipy/integrate/_ivp/bdf.py +478 -0
- scipy/integrate/_ivp/common.py +451 -0
- scipy/integrate/_ivp/dop853_coefficients.py +193 -0
- scipy/integrate/_ivp/ivp.py +755 -0
- scipy/integrate/_ivp/lsoda.py +224 -0
- scipy/integrate/_ivp/radau.py +572 -0
- scipy/integrate/_ivp/rk.py +601 -0
- scipy/integrate/_ivp/tests/__init__.py +0 -0
- scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
- scipy/integrate/_ivp/tests/test_rk.py +37 -0
- scipy/integrate/_lebedev.py +5450 -0
- scipy/integrate/_lsoda.cp312-win_arm64.lib +0 -0
- scipy/integrate/_lsoda.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_ode.py +1395 -0
- scipy/integrate/_odepack.cp312-win_arm64.lib +0 -0
- scipy/integrate/_odepack.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_odepack_py.py +273 -0
- scipy/integrate/_quad_vec.py +674 -0
- scipy/integrate/_quadpack.cp312-win_arm64.lib +0 -0
- scipy/integrate/_quadpack.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_quadpack_py.py +1283 -0
- scipy/integrate/_quadrature.py +1336 -0
- scipy/integrate/_rules/__init__.py +12 -0
- scipy/integrate/_rules/_base.py +518 -0
- scipy/integrate/_rules/_gauss_kronrod.py +202 -0
- scipy/integrate/_rules/_gauss_legendre.py +62 -0
- scipy/integrate/_rules/_genz_malik.py +210 -0
- scipy/integrate/_tanhsinh.py +1385 -0
- scipy/integrate/_test_multivariate.cp312-win_arm64.lib +0 -0
- scipy/integrate/_test_multivariate.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_test_odeint_banded.cp312-win_arm64.lib +0 -0
- scipy/integrate/_test_odeint_banded.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_vode.cp312-win_arm64.lib +0 -0
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- scipy/integrate/lsoda.py +15 -0
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- scipy/integrate/quadpack.py +23 -0
- scipy/integrate/tests/__init__.py +0 -0
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- scipy/integrate/tests/test_banded_ode_solvers.py +305 -0
- scipy/integrate/tests/test_bvp.py +714 -0
- scipy/integrate/tests/test_cubature.py +1375 -0
- scipy/integrate/tests/test_integrate.py +840 -0
- scipy/integrate/tests/test_odeint_jac.py +74 -0
- scipy/integrate/tests/test_quadpack.py +680 -0
- scipy/integrate/tests/test_quadrature.py +730 -0
- scipy/integrate/tests/test_tanhsinh.py +1171 -0
- scipy/integrate/vode.py +15 -0
- scipy/interpolate/__init__.py +228 -0
- scipy/interpolate/_bary_rational.py +715 -0
- scipy/interpolate/_bsplines.py +2469 -0
- scipy/interpolate/_cubic.py +973 -0
- scipy/interpolate/_dfitpack.cp312-win_arm64.lib +0 -0
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- scipy/io/_fast_matrix_market/__init__.py +600 -0
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scipy/io/_idl.py
ADDED
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# IDLSave - a python module to read IDL 'save' files
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# Copyright (c) 2010 Thomas P. Robitaille
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# Many thanks to Craig Markwardt for publishing the Unofficial Format
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# Specification for IDL .sav files, without which this Python module would not
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# exist (http://cow.physics.wisc.edu/~craigm/idl/savefmt).
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# This code was developed by with permission from ITT Visual Information
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# Systems. IDL(r) is a registered trademark of ITT Visual Information Systems,
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# Inc. for their Interactive Data Language software.
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# Permission is hereby granted, free of charge, to any person obtaining a
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# copy of this software and associated documentation files (the "Software"),
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# to deal in the Software without restriction, including without limitation
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# the rights to use, copy, modify, merge, publish, distribute, sublicense,
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# and/or sell copies of the Software, and to permit persons to whom the
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# Software is furnished to do so, subject to the following conditions:
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# The above copyright notice and this permission notice shall be included in
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# all copies or substantial portions of the Software.
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# THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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# IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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# FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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# AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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# LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
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# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
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# DEALINGS IN THE SOFTWARE.
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__all__ = ['readsav']
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import struct
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import numpy as np
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import tempfile
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import zlib
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import warnings
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# Define the different data types that can be found in an IDL save file
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DTYPE_DICT = {1: '>u1',
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2: '>i2',
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3: '>i4',
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4: '>f4',
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5: '>f8',
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6: '>c8',
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7: '|O',
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8: '|O',
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9: '>c16',
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10: '|O',
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11: '|O',
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12: '>u2',
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13: '>u4',
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14: '>i8',
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15: '>u8'}
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# Define the different record types that can be found in an IDL save file
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RECTYPE_DICT = {0: "START_MARKER",
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1: "COMMON_VARIABLE",
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2: "VARIABLE",
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3: "SYSTEM_VARIABLE",
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6: "END_MARKER",
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10: "TIMESTAMP",
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12: "COMPILED",
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13: "IDENTIFICATION",
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14: "VERSION",
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15: "HEAP_HEADER",
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16: "HEAP_DATA",
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17: "PROMOTE64",
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19: "NOTICE",
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20: "DESCRIPTION"}
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# Define a dictionary to contain structure definitions
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STRUCT_DICT = {}
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def _align_32(f):
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'''Align to the next 32-bit position in a file'''
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pos = f.tell()
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if pos % 4 != 0:
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f.seek(pos + 4 - pos % 4)
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return
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def _skip_bytes(f, n):
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'''Skip `n` bytes'''
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f.read(n)
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return
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def _read_bytes(f, n):
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'''Read the next `n` bytes'''
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return f.read(n)
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def _read_byte(f):
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'''Read a single byte'''
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return np.uint8(struct.unpack('>B', f.read(4)[:1])[0])
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def _read_long(f):
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'''Read a signed 32-bit integer'''
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return np.int32(struct.unpack('>l', f.read(4))[0])
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def _read_int16(f):
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'''Read a signed 16-bit integer'''
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return np.int16(struct.unpack('>h', f.read(4)[2:4])[0])
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def _read_int32(f):
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'''Read a signed 32-bit integer'''
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return np.int32(struct.unpack('>i', f.read(4))[0])
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def _read_int64(f):
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'''Read a signed 64-bit integer'''
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return np.int64(struct.unpack('>q', f.read(8))[0])
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def _read_uint16(f):
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'''Read an unsigned 16-bit integer'''
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return np.uint16(struct.unpack('>H', f.read(4)[2:4])[0])
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def _read_uint32(f):
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'''Read an unsigned 32-bit integer'''
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return np.uint32(struct.unpack('>I', f.read(4))[0])
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def _read_uint64(f):
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'''Read an unsigned 64-bit integer'''
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return np.uint64(struct.unpack('>Q', f.read(8))[0])
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def _read_float32(f):
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'''Read a 32-bit float'''
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return np.float32(struct.unpack('>f', f.read(4))[0])
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def _read_float64(f):
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'''Read a 64-bit float'''
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return np.float64(struct.unpack('>d', f.read(8))[0])
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class Pointer:
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'''Class used to define pointers'''
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def __init__(self, index):
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self.index = index
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return
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class ObjectPointer(Pointer):
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'''Class used to define object pointers'''
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pass
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def _read_string(f):
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'''Read a string'''
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length = _read_long(f)
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if length > 0:
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chars = _read_bytes(f, length).decode('latin1')
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_align_32(f)
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else:
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+
chars = ''
|
166
|
+
return chars
|
167
|
+
|
168
|
+
|
169
|
+
def _read_string_data(f):
|
170
|
+
'''Read a data string (length is specified twice)'''
|
171
|
+
length = _read_long(f)
|
172
|
+
if length > 0:
|
173
|
+
length = _read_long(f)
|
174
|
+
string_data = _read_bytes(f, length)
|
175
|
+
_align_32(f)
|
176
|
+
else:
|
177
|
+
string_data = ''
|
178
|
+
return string_data
|
179
|
+
|
180
|
+
|
181
|
+
def _read_data(f, dtype):
|
182
|
+
'''Read a variable with a specified data type'''
|
183
|
+
if dtype == 1:
|
184
|
+
if _read_int32(f) != 1:
|
185
|
+
raise Exception("Error occurred while reading byte variable")
|
186
|
+
return _read_byte(f)
|
187
|
+
elif dtype == 2:
|
188
|
+
return _read_int16(f)
|
189
|
+
elif dtype == 3:
|
190
|
+
return _read_int32(f)
|
191
|
+
elif dtype == 4:
|
192
|
+
return _read_float32(f)
|
193
|
+
elif dtype == 5:
|
194
|
+
return _read_float64(f)
|
195
|
+
elif dtype == 6:
|
196
|
+
real = _read_float32(f)
|
197
|
+
imag = _read_float32(f)
|
198
|
+
return np.complex64(real + imag * 1j)
|
199
|
+
elif dtype == 7:
|
200
|
+
return _read_string_data(f)
|
201
|
+
elif dtype == 8:
|
202
|
+
raise Exception("Should not be here - please report this")
|
203
|
+
elif dtype == 9:
|
204
|
+
real = _read_float64(f)
|
205
|
+
imag = _read_float64(f)
|
206
|
+
return np.complex128(real + imag * 1j)
|
207
|
+
elif dtype == 10:
|
208
|
+
return Pointer(_read_int32(f))
|
209
|
+
elif dtype == 11:
|
210
|
+
return ObjectPointer(_read_int32(f))
|
211
|
+
elif dtype == 12:
|
212
|
+
return _read_uint16(f)
|
213
|
+
elif dtype == 13:
|
214
|
+
return _read_uint32(f)
|
215
|
+
elif dtype == 14:
|
216
|
+
return _read_int64(f)
|
217
|
+
elif dtype == 15:
|
218
|
+
return _read_uint64(f)
|
219
|
+
else:
|
220
|
+
raise Exception(f"Unknown IDL type: {dtype} - please report this")
|
221
|
+
|
222
|
+
|
223
|
+
def _read_structure(f, array_desc, struct_desc):
|
224
|
+
'''
|
225
|
+
Read a structure, with the array and structure descriptors given as
|
226
|
+
`array_desc` and `structure_desc` respectively.
|
227
|
+
'''
|
228
|
+
|
229
|
+
nrows = array_desc['nelements']
|
230
|
+
columns = struct_desc['tagtable']
|
231
|
+
|
232
|
+
dtype = []
|
233
|
+
for col in columns:
|
234
|
+
if col['structure'] or col['array']:
|
235
|
+
dtype.append(((col['name'].lower(), col['name']), np.object_))
|
236
|
+
else:
|
237
|
+
if col['typecode'] in DTYPE_DICT:
|
238
|
+
dtype.append(((col['name'].lower(), col['name']),
|
239
|
+
DTYPE_DICT[col['typecode']]))
|
240
|
+
else:
|
241
|
+
raise Exception(f"Variable type {col['typecode']} not implemented")
|
242
|
+
|
243
|
+
structure = np.rec.recarray((nrows, ), dtype=dtype)
|
244
|
+
|
245
|
+
for i in range(nrows):
|
246
|
+
for col in columns:
|
247
|
+
dtype = col['typecode']
|
248
|
+
if col['structure']:
|
249
|
+
structure[col['name']][i] = _read_structure(f,
|
250
|
+
struct_desc['arrtable'][col['name']],
|
251
|
+
struct_desc['structtable'][col['name']])
|
252
|
+
elif col['array']:
|
253
|
+
structure[col['name']][i] = _read_array(f, dtype,
|
254
|
+
struct_desc['arrtable'][col['name']])
|
255
|
+
else:
|
256
|
+
structure[col['name']][i] = _read_data(f, dtype)
|
257
|
+
|
258
|
+
# Reshape structure if needed
|
259
|
+
if array_desc['ndims'] > 1:
|
260
|
+
dims = array_desc['dims'][:int(array_desc['ndims'])]
|
261
|
+
dims.reverse()
|
262
|
+
structure = structure.reshape(dims)
|
263
|
+
|
264
|
+
return structure
|
265
|
+
|
266
|
+
|
267
|
+
def _read_array(f, typecode, array_desc):
|
268
|
+
'''
|
269
|
+
Read an array of type `typecode`, with the array descriptor given as
|
270
|
+
`array_desc`.
|
271
|
+
'''
|
272
|
+
|
273
|
+
if typecode in [1, 3, 4, 5, 6, 9, 13, 14, 15]:
|
274
|
+
|
275
|
+
if typecode == 1:
|
276
|
+
nbytes = _read_int32(f)
|
277
|
+
if nbytes != array_desc['nbytes']:
|
278
|
+
warnings.warn("Not able to verify number of bytes from header",
|
279
|
+
stacklevel=3)
|
280
|
+
|
281
|
+
# Read bytes as numpy array
|
282
|
+
array = np.frombuffer(f.read(array_desc['nbytes']),
|
283
|
+
dtype=DTYPE_DICT[typecode])
|
284
|
+
|
285
|
+
elif typecode in [2, 12]:
|
286
|
+
|
287
|
+
# These are 2 byte types, need to skip every two as they are not packed
|
288
|
+
|
289
|
+
array = np.frombuffer(f.read(array_desc['nbytes']*2),
|
290
|
+
dtype=DTYPE_DICT[typecode])[1::2]
|
291
|
+
|
292
|
+
else:
|
293
|
+
|
294
|
+
# Read bytes into list
|
295
|
+
array = []
|
296
|
+
for i in range(array_desc['nelements']):
|
297
|
+
dtype = typecode
|
298
|
+
data = _read_data(f, dtype)
|
299
|
+
array.append(data)
|
300
|
+
|
301
|
+
array = np.array(array, dtype=np.object_)
|
302
|
+
|
303
|
+
# Reshape array if needed
|
304
|
+
if array_desc['ndims'] > 1:
|
305
|
+
dims = array_desc['dims'][:int(array_desc['ndims'])]
|
306
|
+
dims.reverse()
|
307
|
+
array = array.reshape(dims)
|
308
|
+
|
309
|
+
# Go to next alignment position
|
310
|
+
_align_32(f)
|
311
|
+
|
312
|
+
return array
|
313
|
+
|
314
|
+
|
315
|
+
def _read_record(f):
|
316
|
+
'''Function to read in a full record'''
|
317
|
+
|
318
|
+
record = {'rectype': _read_long(f)}
|
319
|
+
|
320
|
+
nextrec = _read_uint32(f)
|
321
|
+
nextrec += _read_uint32(f).astype(np.int64) * 2**32
|
322
|
+
|
323
|
+
_skip_bytes(f, 4)
|
324
|
+
|
325
|
+
if record['rectype'] not in RECTYPE_DICT:
|
326
|
+
raise Exception(f"Unknown RECTYPE: {record['rectype']}")
|
327
|
+
|
328
|
+
record['rectype'] = RECTYPE_DICT[record['rectype']]
|
329
|
+
|
330
|
+
if record['rectype'] in ["VARIABLE", "HEAP_DATA"]:
|
331
|
+
|
332
|
+
if record['rectype'] == "VARIABLE":
|
333
|
+
record['varname'] = _read_string(f)
|
334
|
+
else:
|
335
|
+
record['heap_index'] = _read_long(f)
|
336
|
+
_skip_bytes(f, 4)
|
337
|
+
|
338
|
+
rectypedesc = _read_typedesc(f)
|
339
|
+
|
340
|
+
if rectypedesc['typecode'] == 0:
|
341
|
+
|
342
|
+
if nextrec == f.tell():
|
343
|
+
record['data'] = None # Indicates NULL value
|
344
|
+
else:
|
345
|
+
raise ValueError("Unexpected type code: 0")
|
346
|
+
|
347
|
+
else:
|
348
|
+
|
349
|
+
varstart = _read_long(f)
|
350
|
+
if varstart != 7:
|
351
|
+
raise Exception("VARSTART is not 7")
|
352
|
+
|
353
|
+
if rectypedesc['structure']:
|
354
|
+
record['data'] = _read_structure(f, rectypedesc['array_desc'],
|
355
|
+
rectypedesc['struct_desc'])
|
356
|
+
elif rectypedesc['array']:
|
357
|
+
record['data'] = _read_array(f, rectypedesc['typecode'],
|
358
|
+
rectypedesc['array_desc'])
|
359
|
+
else:
|
360
|
+
dtype = rectypedesc['typecode']
|
361
|
+
record['data'] = _read_data(f, dtype)
|
362
|
+
|
363
|
+
elif record['rectype'] == "TIMESTAMP":
|
364
|
+
|
365
|
+
_skip_bytes(f, 4*256)
|
366
|
+
record['date'] = _read_string(f)
|
367
|
+
record['user'] = _read_string(f)
|
368
|
+
record['host'] = _read_string(f)
|
369
|
+
|
370
|
+
elif record['rectype'] == "VERSION":
|
371
|
+
|
372
|
+
record['format'] = _read_long(f)
|
373
|
+
record['arch'] = _read_string(f)
|
374
|
+
record['os'] = _read_string(f)
|
375
|
+
record['release'] = _read_string(f)
|
376
|
+
|
377
|
+
elif record['rectype'] == "IDENTIFICATON":
|
378
|
+
|
379
|
+
record['author'] = _read_string(f)
|
380
|
+
record['title'] = _read_string(f)
|
381
|
+
record['idcode'] = _read_string(f)
|
382
|
+
|
383
|
+
elif record['rectype'] == "NOTICE":
|
384
|
+
|
385
|
+
record['notice'] = _read_string(f)
|
386
|
+
|
387
|
+
elif record['rectype'] == "DESCRIPTION":
|
388
|
+
|
389
|
+
record['description'] = _read_string_data(f)
|
390
|
+
|
391
|
+
elif record['rectype'] == "HEAP_HEADER":
|
392
|
+
|
393
|
+
record['nvalues'] = _read_long(f)
|
394
|
+
record['indices'] = [_read_long(f) for _ in range(record['nvalues'])]
|
395
|
+
|
396
|
+
elif record['rectype'] == "COMMONBLOCK":
|
397
|
+
|
398
|
+
record['nvars'] = _read_long(f)
|
399
|
+
record['name'] = _read_string(f)
|
400
|
+
record['varnames'] = [_read_string(f) for _ in range(record['nvars'])]
|
401
|
+
|
402
|
+
elif record['rectype'] == "END_MARKER":
|
403
|
+
|
404
|
+
record['end'] = True
|
405
|
+
|
406
|
+
elif record['rectype'] == "UNKNOWN":
|
407
|
+
|
408
|
+
warnings.warn("Skipping UNKNOWN record", stacklevel=3)
|
409
|
+
|
410
|
+
elif record['rectype'] == "SYSTEM_VARIABLE":
|
411
|
+
|
412
|
+
warnings.warn("Skipping SYSTEM_VARIABLE record", stacklevel=3)
|
413
|
+
|
414
|
+
else:
|
415
|
+
|
416
|
+
raise Exception(f"record['rectype']={record['rectype']} not implemented")
|
417
|
+
|
418
|
+
f.seek(nextrec)
|
419
|
+
|
420
|
+
return record
|
421
|
+
|
422
|
+
|
423
|
+
def _read_typedesc(f):
|
424
|
+
'''Function to read in a type descriptor'''
|
425
|
+
|
426
|
+
typedesc = {'typecode': _read_long(f), 'varflags': _read_long(f)}
|
427
|
+
|
428
|
+
if typedesc['varflags'] & 2 == 2:
|
429
|
+
raise Exception("System variables not implemented")
|
430
|
+
|
431
|
+
typedesc['array'] = typedesc['varflags'] & 4 == 4
|
432
|
+
typedesc['structure'] = typedesc['varflags'] & 32 == 32
|
433
|
+
|
434
|
+
if typedesc['structure']:
|
435
|
+
typedesc['array_desc'] = _read_arraydesc(f)
|
436
|
+
typedesc['struct_desc'] = _read_structdesc(f)
|
437
|
+
elif typedesc['array']:
|
438
|
+
typedesc['array_desc'] = _read_arraydesc(f)
|
439
|
+
|
440
|
+
return typedesc
|
441
|
+
|
442
|
+
|
443
|
+
def _read_arraydesc(f):
|
444
|
+
'''Function to read in an array descriptor'''
|
445
|
+
|
446
|
+
arraydesc = {'arrstart': _read_long(f)}
|
447
|
+
|
448
|
+
if arraydesc['arrstart'] == 8:
|
449
|
+
|
450
|
+
_skip_bytes(f, 4)
|
451
|
+
|
452
|
+
arraydesc['nbytes'] = _read_long(f)
|
453
|
+
arraydesc['nelements'] = _read_long(f)
|
454
|
+
arraydesc['ndims'] = _read_long(f)
|
455
|
+
|
456
|
+
_skip_bytes(f, 8)
|
457
|
+
|
458
|
+
arraydesc['nmax'] = _read_long(f)
|
459
|
+
|
460
|
+
arraydesc['dims'] = [_read_long(f) for _ in range(arraydesc['nmax'])]
|
461
|
+
|
462
|
+
elif arraydesc['arrstart'] == 18:
|
463
|
+
|
464
|
+
warnings.warn("Using experimental 64-bit array read", stacklevel=3)
|
465
|
+
|
466
|
+
_skip_bytes(f, 8)
|
467
|
+
|
468
|
+
arraydesc['nbytes'] = _read_uint64(f)
|
469
|
+
arraydesc['nelements'] = _read_uint64(f)
|
470
|
+
arraydesc['ndims'] = _read_long(f)
|
471
|
+
|
472
|
+
_skip_bytes(f, 8)
|
473
|
+
|
474
|
+
arraydesc['nmax'] = 8
|
475
|
+
|
476
|
+
arraydesc['dims'] = []
|
477
|
+
for d in range(arraydesc['nmax']):
|
478
|
+
v = _read_long(f)
|
479
|
+
if v != 0:
|
480
|
+
raise Exception("Expected a zero in ARRAY_DESC")
|
481
|
+
arraydesc['dims'].append(_read_long(f))
|
482
|
+
|
483
|
+
else:
|
484
|
+
raise Exception(f"Unknown ARRSTART: {arraydesc['arrstart']}")
|
485
|
+
|
486
|
+
return arraydesc
|
487
|
+
|
488
|
+
|
489
|
+
def _read_structdesc(f):
|
490
|
+
'''Function to read in a structure descriptor'''
|
491
|
+
|
492
|
+
structdesc = {}
|
493
|
+
|
494
|
+
structstart = _read_long(f)
|
495
|
+
if structstart != 9:
|
496
|
+
raise Exception("STRUCTSTART should be 9")
|
497
|
+
|
498
|
+
structdesc['name'] = _read_string(f)
|
499
|
+
predef = _read_long(f)
|
500
|
+
structdesc['ntags'] = _read_long(f)
|
501
|
+
structdesc['nbytes'] = _read_long(f)
|
502
|
+
|
503
|
+
structdesc['predef'] = predef & 1
|
504
|
+
structdesc['inherits'] = predef & 2
|
505
|
+
structdesc['is_super'] = predef & 4
|
506
|
+
|
507
|
+
if not structdesc['predef']:
|
508
|
+
|
509
|
+
structdesc['tagtable'] = [_read_tagdesc(f)
|
510
|
+
for _ in range(structdesc['ntags'])]
|
511
|
+
|
512
|
+
for tag in structdesc['tagtable']:
|
513
|
+
tag['name'] = _read_string(f)
|
514
|
+
|
515
|
+
structdesc['arrtable'] = {tag['name']: _read_arraydesc(f)
|
516
|
+
for tag in structdesc['tagtable']
|
517
|
+
if tag['array']}
|
518
|
+
|
519
|
+
structdesc['structtable'] = {tag['name']: _read_structdesc(f)
|
520
|
+
for tag in structdesc['tagtable']
|
521
|
+
if tag['structure']}
|
522
|
+
|
523
|
+
if structdesc['inherits'] or structdesc['is_super']:
|
524
|
+
structdesc['classname'] = _read_string(f)
|
525
|
+
structdesc['nsupclasses'] = _read_long(f)
|
526
|
+
structdesc['supclassnames'] = [
|
527
|
+
_read_string(f) for _ in range(structdesc['nsupclasses'])]
|
528
|
+
structdesc['supclasstable'] = [
|
529
|
+
_read_structdesc(f) for _ in range(structdesc['nsupclasses'])]
|
530
|
+
|
531
|
+
STRUCT_DICT[structdesc['name']] = structdesc
|
532
|
+
|
533
|
+
else:
|
534
|
+
|
535
|
+
if structdesc['name'] not in STRUCT_DICT:
|
536
|
+
raise Exception("PREDEF=1 but can't find definition")
|
537
|
+
|
538
|
+
structdesc = STRUCT_DICT[structdesc['name']]
|
539
|
+
|
540
|
+
return structdesc
|
541
|
+
|
542
|
+
|
543
|
+
def _read_tagdesc(f):
|
544
|
+
'''Function to read in a tag descriptor'''
|
545
|
+
|
546
|
+
tagdesc = {'offset': _read_long(f)}
|
547
|
+
|
548
|
+
if tagdesc['offset'] == -1:
|
549
|
+
tagdesc['offset'] = _read_uint64(f)
|
550
|
+
|
551
|
+
tagdesc['typecode'] = _read_long(f)
|
552
|
+
tagflags = _read_long(f)
|
553
|
+
|
554
|
+
tagdesc['array'] = tagflags & 4 == 4
|
555
|
+
tagdesc['structure'] = tagflags & 32 == 32
|
556
|
+
tagdesc['scalar'] = tagdesc['typecode'] in DTYPE_DICT
|
557
|
+
# Assume '10'x is scalar
|
558
|
+
|
559
|
+
return tagdesc
|
560
|
+
|
561
|
+
|
562
|
+
def _replace_heap(variable, heap):
|
563
|
+
|
564
|
+
if isinstance(variable, Pointer):
|
565
|
+
|
566
|
+
while isinstance(variable, Pointer):
|
567
|
+
|
568
|
+
if variable.index == 0:
|
569
|
+
variable = None
|
570
|
+
else:
|
571
|
+
if variable.index in heap:
|
572
|
+
variable = heap[variable.index]
|
573
|
+
else:
|
574
|
+
warnings.warn("Variable referenced by pointer not found "
|
575
|
+
"in heap: variable will be set to None",
|
576
|
+
stacklevel=3)
|
577
|
+
variable = None
|
578
|
+
|
579
|
+
replace, new = _replace_heap(variable, heap)
|
580
|
+
|
581
|
+
if replace:
|
582
|
+
variable = new
|
583
|
+
|
584
|
+
return True, variable
|
585
|
+
|
586
|
+
elif isinstance(variable, np.rec.recarray):
|
587
|
+
|
588
|
+
# Loop over records
|
589
|
+
for ir, record in enumerate(variable):
|
590
|
+
|
591
|
+
replace, new = _replace_heap(record, heap)
|
592
|
+
|
593
|
+
if replace:
|
594
|
+
variable[ir] = new
|
595
|
+
|
596
|
+
return False, variable
|
597
|
+
|
598
|
+
elif isinstance(variable, np.record):
|
599
|
+
|
600
|
+
# Loop over values
|
601
|
+
for iv, value in enumerate(variable):
|
602
|
+
|
603
|
+
replace, new = _replace_heap(value, heap)
|
604
|
+
|
605
|
+
if replace:
|
606
|
+
variable[iv] = new
|
607
|
+
|
608
|
+
return False, variable
|
609
|
+
|
610
|
+
elif isinstance(variable, np.ndarray):
|
611
|
+
|
612
|
+
# Loop over values if type is np.object_
|
613
|
+
if variable.dtype.type is np.object_:
|
614
|
+
|
615
|
+
for iv in range(variable.size):
|
616
|
+
|
617
|
+
replace, new = _replace_heap(variable.item(iv), heap)
|
618
|
+
|
619
|
+
if replace:
|
620
|
+
variable.reshape(-1)[iv] = new
|
621
|
+
|
622
|
+
return False, variable
|
623
|
+
|
624
|
+
else:
|
625
|
+
|
626
|
+
return False, variable
|
627
|
+
|
628
|
+
|
629
|
+
class AttrDict(dict):
|
630
|
+
'''
|
631
|
+
A case-insensitive dictionary with access via item, attribute, and call
|
632
|
+
notations:
|
633
|
+
|
634
|
+
>>> from scipy.io._idl import AttrDict
|
635
|
+
>>> d = AttrDict()
|
636
|
+
>>> d['Variable'] = 123
|
637
|
+
>>> d['Variable']
|
638
|
+
123
|
639
|
+
>>> d.Variable
|
640
|
+
123
|
641
|
+
>>> d.variable
|
642
|
+
123
|
643
|
+
>>> d('VARIABLE')
|
644
|
+
123
|
645
|
+
>>> d['missing']
|
646
|
+
Traceback (most recent error last):
|
647
|
+
...
|
648
|
+
KeyError: 'missing'
|
649
|
+
>>> d.missing
|
650
|
+
Traceback (most recent error last):
|
651
|
+
...
|
652
|
+
AttributeError: 'AttrDict' object has no attribute 'missing'
|
653
|
+
'''
|
654
|
+
|
655
|
+
def __init__(self, init=None):
|
656
|
+
if init is None:
|
657
|
+
init = {}
|
658
|
+
dict.__init__(self, init)
|
659
|
+
|
660
|
+
def __getitem__(self, name):
|
661
|
+
return super().__getitem__(name.lower())
|
662
|
+
|
663
|
+
def __setitem__(self, key, value):
|
664
|
+
return super().__setitem__(key.lower(), value)
|
665
|
+
|
666
|
+
def __getattr__(self, name):
|
667
|
+
try:
|
668
|
+
return self.__getitem__(name)
|
669
|
+
except KeyError:
|
670
|
+
raise AttributeError(
|
671
|
+
f"'{type(self)}' object has no attribute '{name}'") from None
|
672
|
+
|
673
|
+
__setattr__ = __setitem__
|
674
|
+
__call__ = __getitem__
|
675
|
+
|
676
|
+
|
677
|
+
def readsav(file_name, idict=None, python_dict=False,
|
678
|
+
uncompressed_file_name=None, verbose=False):
|
679
|
+
"""
|
680
|
+
Read an IDL .sav file.
|
681
|
+
|
682
|
+
Parameters
|
683
|
+
----------
|
684
|
+
file_name : str
|
685
|
+
Name of the IDL save file.
|
686
|
+
idict : dict, optional
|
687
|
+
Dictionary in which to insert .sav file variables.
|
688
|
+
python_dict : bool, optional
|
689
|
+
By default, the object return is not a Python dictionary, but a
|
690
|
+
case-insensitive dictionary with item, attribute, and call access
|
691
|
+
to variables. To get a standard Python dictionary, set this option
|
692
|
+
to True.
|
693
|
+
uncompressed_file_name : str, optional
|
694
|
+
This option only has an effect for .sav files written with the
|
695
|
+
/compress option. If a file name is specified, compressed .sav
|
696
|
+
files are uncompressed to this file. Otherwise, readsav will use
|
697
|
+
the `tempfile` module to determine a temporary filename
|
698
|
+
automatically, and will remove the temporary file upon successfully
|
699
|
+
reading it in.
|
700
|
+
verbose : bool, optional
|
701
|
+
Whether to print out information about the save file, including
|
702
|
+
the records read, and available variables.
|
703
|
+
|
704
|
+
Returns
|
705
|
+
-------
|
706
|
+
idl_dict : AttrDict or dict
|
707
|
+
If `python_dict` is set to False (default), this function returns a
|
708
|
+
case-insensitive dictionary with item, attribute, and call access
|
709
|
+
to variables. If `python_dict` is set to True, this function
|
710
|
+
returns a Python dictionary with all variable names in lowercase.
|
711
|
+
If `idict` was specified, then variables are written to the
|
712
|
+
dictionary specified, and the updated dictionary is returned.
|
713
|
+
|
714
|
+
Examples
|
715
|
+
--------
|
716
|
+
>>> from os.path import dirname, join as pjoin
|
717
|
+
>>> import scipy.io as sio
|
718
|
+
>>> from scipy.io import readsav
|
719
|
+
|
720
|
+
Get the filename for an example .sav file from the tests/data directory.
|
721
|
+
|
722
|
+
>>> data_dir = pjoin(dirname(sio.__file__), 'tests', 'data')
|
723
|
+
>>> sav_fname = pjoin(data_dir, 'array_float32_1d.sav')
|
724
|
+
|
725
|
+
Load the .sav file contents.
|
726
|
+
|
727
|
+
>>> sav_data = readsav(sav_fname)
|
728
|
+
|
729
|
+
Get keys of the .sav file contents.
|
730
|
+
|
731
|
+
>>> print(sav_data.keys())
|
732
|
+
dict_keys(['array1d'])
|
733
|
+
|
734
|
+
Access a content with a key.
|
735
|
+
|
736
|
+
>>> print(sav_data['array1d'])
|
737
|
+
[0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0.
|
738
|
+
0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0.
|
739
|
+
0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0.
|
740
|
+
0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0.
|
741
|
+
0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0. 0.
|
742
|
+
0. 0. 0.]
|
743
|
+
|
744
|
+
"""
|
745
|
+
|
746
|
+
# Initialize record and variable holders
|
747
|
+
records = []
|
748
|
+
if python_dict or idict:
|
749
|
+
variables = {}
|
750
|
+
else:
|
751
|
+
variables = AttrDict()
|
752
|
+
|
753
|
+
# Open the IDL file
|
754
|
+
f = open(file_name, 'rb')
|
755
|
+
|
756
|
+
# Read the signature, which should be 'SR'
|
757
|
+
signature = _read_bytes(f, 2)
|
758
|
+
if signature != b'SR':
|
759
|
+
raise Exception(f"Invalid SIGNATURE: {signature}")
|
760
|
+
|
761
|
+
# Next, the record format, which is '\x00\x04' for normal .sav
|
762
|
+
# files, and '\x00\x06' for compressed .sav files.
|
763
|
+
recfmt = _read_bytes(f, 2)
|
764
|
+
|
765
|
+
if recfmt == b'\x00\x04':
|
766
|
+
pass
|
767
|
+
|
768
|
+
elif recfmt == b'\x00\x06':
|
769
|
+
|
770
|
+
if verbose:
|
771
|
+
print("IDL Save file is compressed")
|
772
|
+
|
773
|
+
if uncompressed_file_name:
|
774
|
+
fout = open(uncompressed_file_name, 'w+b')
|
775
|
+
else:
|
776
|
+
fout = tempfile.NamedTemporaryFile(suffix='.sav')
|
777
|
+
|
778
|
+
if verbose:
|
779
|
+
print(f" -> expanding to {fout.name}")
|
780
|
+
|
781
|
+
# Write header
|
782
|
+
fout.write(b'SR\x00\x04')
|
783
|
+
|
784
|
+
# Cycle through records
|
785
|
+
while True:
|
786
|
+
|
787
|
+
# Read record type
|
788
|
+
rectype = _read_long(f)
|
789
|
+
fout.write(struct.pack('>l', int(rectype)))
|
790
|
+
|
791
|
+
# Read position of next record and return as int
|
792
|
+
nextrec = _read_uint32(f)
|
793
|
+
nextrec += _read_uint32(f).astype(np.int64) * 2**32
|
794
|
+
|
795
|
+
# Read the unknown 4 bytes
|
796
|
+
unknown = f.read(4)
|
797
|
+
|
798
|
+
# Check if the end of the file has been reached
|
799
|
+
if RECTYPE_DICT[rectype] == 'END_MARKER':
|
800
|
+
modval = np.int64(2**32)
|
801
|
+
fout.write(struct.pack('>I', int(nextrec) % modval))
|
802
|
+
fout.write(
|
803
|
+
struct.pack('>I', int((nextrec - (nextrec % modval)) / modval))
|
804
|
+
)
|
805
|
+
fout.write(unknown)
|
806
|
+
break
|
807
|
+
|
808
|
+
# Find current position
|
809
|
+
pos = f.tell()
|
810
|
+
|
811
|
+
# Decompress record
|
812
|
+
rec_string = zlib.decompress(f.read(nextrec-pos))
|
813
|
+
|
814
|
+
# Find new position of next record
|
815
|
+
nextrec = fout.tell() + len(rec_string) + 12
|
816
|
+
|
817
|
+
# Write out record
|
818
|
+
fout.write(struct.pack('>I', int(nextrec % 2**32)))
|
819
|
+
fout.write(struct.pack('>I', int((nextrec - (nextrec % 2**32)) / 2**32)))
|
820
|
+
fout.write(unknown)
|
821
|
+
fout.write(rec_string)
|
822
|
+
|
823
|
+
# Close the original compressed file
|
824
|
+
f.close()
|
825
|
+
|
826
|
+
# Set f to be the decompressed file, and skip the first four bytes
|
827
|
+
f = fout
|
828
|
+
f.seek(4)
|
829
|
+
|
830
|
+
else:
|
831
|
+
raise Exception(f"Invalid RECFMT: {recfmt}")
|
832
|
+
|
833
|
+
# Loop through records, and add them to the list
|
834
|
+
while True:
|
835
|
+
r = _read_record(f)
|
836
|
+
records.append(r)
|
837
|
+
if 'end' in r:
|
838
|
+
if r['end']:
|
839
|
+
break
|
840
|
+
|
841
|
+
# Close the file
|
842
|
+
f.close()
|
843
|
+
|
844
|
+
# Find heap data variables
|
845
|
+
heap = {}
|
846
|
+
for r in records:
|
847
|
+
if r['rectype'] == "HEAP_DATA":
|
848
|
+
heap[r['heap_index']] = r['data']
|
849
|
+
|
850
|
+
# Find all variables
|
851
|
+
for r in records:
|
852
|
+
if r['rectype'] == "VARIABLE":
|
853
|
+
replace, new = _replace_heap(r['data'], heap)
|
854
|
+
if replace:
|
855
|
+
r['data'] = new
|
856
|
+
variables[r['varname'].lower()] = r['data']
|
857
|
+
|
858
|
+
if verbose:
|
859
|
+
|
860
|
+
# Print out timestamp info about the file
|
861
|
+
for record in records:
|
862
|
+
if record['rectype'] == "TIMESTAMP":
|
863
|
+
print("-"*50)
|
864
|
+
print(f"Date: {record['date']}")
|
865
|
+
print(f"User: {record['user']}")
|
866
|
+
print(f"Host: {record['host']}")
|
867
|
+
break
|
868
|
+
|
869
|
+
# Print out version info about the file
|
870
|
+
for record in records:
|
871
|
+
if record['rectype'] == "VERSION":
|
872
|
+
print("-"*50)
|
873
|
+
print(f"Format: {record['format']}")
|
874
|
+
print(f"Architecture: {record['arch']}")
|
875
|
+
print(f"Operating System: {record['os']}")
|
876
|
+
print(f"IDL Version: {record['release']}")
|
877
|
+
break
|
878
|
+
|
879
|
+
# Print out identification info about the file
|
880
|
+
for record in records:
|
881
|
+
if record['rectype'] == "IDENTIFICATON":
|
882
|
+
print("-"*50)
|
883
|
+
print(f"Author: {record['author']}")
|
884
|
+
print(f"Title: {record['title']}")
|
885
|
+
print(f"ID Code: {record['idcode']}")
|
886
|
+
break
|
887
|
+
|
888
|
+
# Print out descriptions saved with the file
|
889
|
+
for record in records:
|
890
|
+
if record['rectype'] == "DESCRIPTION":
|
891
|
+
print("-"*50)
|
892
|
+
print(f"Description: {record['description']}")
|
893
|
+
break
|
894
|
+
|
895
|
+
print("-"*50)
|
896
|
+
print(f"Successfully read {len(records)} records of which:")
|
897
|
+
|
898
|
+
# Create convenience list of record types
|
899
|
+
rectypes = [r['rectype'] for r in records]
|
900
|
+
|
901
|
+
for rt in set(rectypes):
|
902
|
+
if rt != 'END_MARKER':
|
903
|
+
print(f" - {rectypes.count(rt)} are of type {rt}")
|
904
|
+
print("-"*50)
|
905
|
+
|
906
|
+
if 'VARIABLE' in rectypes:
|
907
|
+
print("Available variables:")
|
908
|
+
for var in variables:
|
909
|
+
print(f" - {var} [{type(variables[var])}]")
|
910
|
+
print("-"*50)
|
911
|
+
|
912
|
+
if idict:
|
913
|
+
for var in variables:
|
914
|
+
idict[var] = variables[var]
|
915
|
+
return idict
|
916
|
+
else:
|
917
|
+
return variables
|