scipy 1.16.2__cp312-cp312-win_arm64.whl

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Files changed (1530) hide show
  1. scipy/__config__.py +161 -0
  2. scipy/__init__.py +150 -0
  3. scipy/_cyutility.cp312-win_arm64.lib +0 -0
  4. scipy/_cyutility.cp312-win_arm64.pyd +0 -0
  5. scipy/_distributor_init.py +18 -0
  6. scipy/_lib/__init__.py +14 -0
  7. scipy/_lib/_array_api.py +931 -0
  8. scipy/_lib/_array_api_compat_vendor.py +9 -0
  9. scipy/_lib/_array_api_no_0d.py +103 -0
  10. scipy/_lib/_bunch.py +229 -0
  11. scipy/_lib/_ccallback.py +251 -0
  12. scipy/_lib/_ccallback_c.cp312-win_arm64.lib +0 -0
  13. scipy/_lib/_ccallback_c.cp312-win_arm64.pyd +0 -0
  14. scipy/_lib/_disjoint_set.py +254 -0
  15. scipy/_lib/_docscrape.py +761 -0
  16. scipy/_lib/_elementwise_iterative_method.py +346 -0
  17. scipy/_lib/_fpumode.cp312-win_arm64.lib +0 -0
  18. scipy/_lib/_fpumode.cp312-win_arm64.pyd +0 -0
  19. scipy/_lib/_gcutils.py +105 -0
  20. scipy/_lib/_pep440.py +487 -0
  21. scipy/_lib/_sparse.py +41 -0
  22. scipy/_lib/_test_ccallback.cp312-win_arm64.lib +0 -0
  23. scipy/_lib/_test_ccallback.cp312-win_arm64.pyd +0 -0
  24. scipy/_lib/_test_deprecation_call.cp312-win_arm64.lib +0 -0
  25. scipy/_lib/_test_deprecation_call.cp312-win_arm64.pyd +0 -0
  26. scipy/_lib/_test_deprecation_def.cp312-win_arm64.lib +0 -0
  27. scipy/_lib/_test_deprecation_def.cp312-win_arm64.pyd +0 -0
  28. scipy/_lib/_testutils.py +373 -0
  29. scipy/_lib/_threadsafety.py +58 -0
  30. scipy/_lib/_tmpdirs.py +86 -0
  31. scipy/_lib/_uarray/LICENSE +29 -0
  32. scipy/_lib/_uarray/__init__.py +116 -0
  33. scipy/_lib/_uarray/_backend.py +707 -0
  34. scipy/_lib/_uarray/_uarray.cp312-win_arm64.lib +0 -0
  35. scipy/_lib/_uarray/_uarray.cp312-win_arm64.pyd +0 -0
  36. scipy/_lib/_util.py +1283 -0
  37. scipy/_lib/array_api_compat/__init__.py +22 -0
  38. scipy/_lib/array_api_compat/_internal.py +59 -0
  39. scipy/_lib/array_api_compat/common/__init__.py +1 -0
  40. scipy/_lib/array_api_compat/common/_aliases.py +727 -0
  41. scipy/_lib/array_api_compat/common/_fft.py +213 -0
  42. scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
  43. scipy/_lib/array_api_compat/common/_linalg.py +232 -0
  44. scipy/_lib/array_api_compat/common/_typing.py +192 -0
  45. scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
  46. scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
  47. scipy/_lib/array_api_compat/cupy/_info.py +336 -0
  48. scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
  49. scipy/_lib/array_api_compat/cupy/fft.py +36 -0
  50. scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
  51. scipy/_lib/array_api_compat/dask/__init__.py +0 -0
  52. scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
  53. scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
  54. scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
  55. scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
  56. scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
  57. scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
  58. scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
  59. scipy/_lib/array_api_compat/numpy/_info.py +366 -0
  60. scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
  61. scipy/_lib/array_api_compat/numpy/fft.py +35 -0
  62. scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
  63. scipy/_lib/array_api_compat/torch/__init__.py +22 -0
  64. scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
  65. scipy/_lib/array_api_compat/torch/_info.py +369 -0
  66. scipy/_lib/array_api_compat/torch/_typing.py +3 -0
  67. scipy/_lib/array_api_compat/torch/fft.py +85 -0
  68. scipy/_lib/array_api_compat/torch/linalg.py +121 -0
  69. scipy/_lib/array_api_extra/__init__.py +38 -0
  70. scipy/_lib/array_api_extra/_delegation.py +171 -0
  71. scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
  72. scipy/_lib/array_api_extra/_lib/_at.py +463 -0
  73. scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
  74. scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
  75. scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
  76. scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
  77. scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
  78. scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
  79. scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
  80. scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
  81. scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
  82. scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
  83. scipy/_lib/array_api_extra/testing.py +359 -0
  84. scipy/_lib/cobyqa/__init__.py +20 -0
  85. scipy/_lib/cobyqa/framework.py +1240 -0
  86. scipy/_lib/cobyqa/main.py +1506 -0
  87. scipy/_lib/cobyqa/models.py +1529 -0
  88. scipy/_lib/cobyqa/problem.py +1296 -0
  89. scipy/_lib/cobyqa/settings.py +132 -0
  90. scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
  91. scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
  92. scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
  93. scipy/_lib/cobyqa/utils/__init__.py +18 -0
  94. scipy/_lib/cobyqa/utils/exceptions.py +22 -0
  95. scipy/_lib/cobyqa/utils/math.py +77 -0
  96. scipy/_lib/cobyqa/utils/versions.py +67 -0
  97. scipy/_lib/decorator.py +399 -0
  98. scipy/_lib/deprecation.py +274 -0
  99. scipy/_lib/doccer.py +366 -0
  100. scipy/_lib/messagestream.cp312-win_arm64.lib +0 -0
  101. scipy/_lib/messagestream.cp312-win_arm64.pyd +0 -0
  102. scipy/_lib/pyprima/__init__.py +212 -0
  103. scipy/_lib/pyprima/cobyla/__init__.py +0 -0
  104. scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
  105. scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
  106. scipy/_lib/pyprima/cobyla/geometry.py +226 -0
  107. scipy/_lib/pyprima/cobyla/initialize.py +215 -0
  108. scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
  109. scipy/_lib/pyprima/cobyla/update.py +289 -0
  110. scipy/_lib/pyprima/common/__init__.py +0 -0
  111. scipy/_lib/pyprima/common/_bounds.py +34 -0
  112. scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
  113. scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
  114. scipy/_lib/pyprima/common/_project.py +173 -0
  115. scipy/_lib/pyprima/common/checkbreak.py +93 -0
  116. scipy/_lib/pyprima/common/consts.py +47 -0
  117. scipy/_lib/pyprima/common/evaluate.py +99 -0
  118. scipy/_lib/pyprima/common/history.py +38 -0
  119. scipy/_lib/pyprima/common/infos.py +30 -0
  120. scipy/_lib/pyprima/common/linalg.py +435 -0
  121. scipy/_lib/pyprima/common/message.py +290 -0
  122. scipy/_lib/pyprima/common/powalg.py +131 -0
  123. scipy/_lib/pyprima/common/preproc.py +277 -0
  124. scipy/_lib/pyprima/common/present.py +5 -0
  125. scipy/_lib/pyprima/common/ratio.py +54 -0
  126. scipy/_lib/pyprima/common/redrho.py +47 -0
  127. scipy/_lib/pyprima/common/selectx.py +296 -0
  128. scipy/_lib/tests/__init__.py +0 -0
  129. scipy/_lib/tests/test__gcutils.py +110 -0
  130. scipy/_lib/tests/test__pep440.py +67 -0
  131. scipy/_lib/tests/test__testutils.py +32 -0
  132. scipy/_lib/tests/test__threadsafety.py +51 -0
  133. scipy/_lib/tests/test__util.py +641 -0
  134. scipy/_lib/tests/test_array_api.py +322 -0
  135. scipy/_lib/tests/test_bunch.py +169 -0
  136. scipy/_lib/tests/test_ccallback.py +196 -0
  137. scipy/_lib/tests/test_config.py +45 -0
  138. scipy/_lib/tests/test_deprecation.py +10 -0
  139. scipy/_lib/tests/test_doccer.py +143 -0
  140. scipy/_lib/tests/test_import_cycles.py +18 -0
  141. scipy/_lib/tests/test_public_api.py +482 -0
  142. scipy/_lib/tests/test_scipy_version.py +28 -0
  143. scipy/_lib/tests/test_tmpdirs.py +48 -0
  144. scipy/_lib/tests/test_warnings.py +137 -0
  145. scipy/_lib/uarray.py +31 -0
  146. scipy/cluster/__init__.py +31 -0
  147. scipy/cluster/_hierarchy.cp312-win_arm64.lib +0 -0
  148. scipy/cluster/_hierarchy.cp312-win_arm64.pyd +0 -0
  149. scipy/cluster/_optimal_leaf_ordering.cp312-win_arm64.lib +0 -0
  150. scipy/cluster/_optimal_leaf_ordering.cp312-win_arm64.pyd +0 -0
  151. scipy/cluster/_vq.cp312-win_arm64.lib +0 -0
  152. scipy/cluster/_vq.cp312-win_arm64.pyd +0 -0
  153. scipy/cluster/hierarchy.py +4348 -0
  154. scipy/cluster/tests/__init__.py +0 -0
  155. scipy/cluster/tests/hierarchy_test_data.py +145 -0
  156. scipy/cluster/tests/test_disjoint_set.py +202 -0
  157. scipy/cluster/tests/test_hierarchy.py +1238 -0
  158. scipy/cluster/tests/test_vq.py +434 -0
  159. scipy/cluster/vq.py +832 -0
  160. scipy/conftest.py +683 -0
  161. scipy/constants/__init__.py +358 -0
  162. scipy/constants/_codata.py +2266 -0
  163. scipy/constants/_constants.py +369 -0
  164. scipy/constants/codata.py +21 -0
  165. scipy/constants/constants.py +53 -0
  166. scipy/constants/tests/__init__.py +0 -0
  167. scipy/constants/tests/test_codata.py +78 -0
  168. scipy/constants/tests/test_constants.py +83 -0
  169. scipy/datasets/__init__.py +90 -0
  170. scipy/datasets/_download_all.py +71 -0
  171. scipy/datasets/_fetchers.py +225 -0
  172. scipy/datasets/_registry.py +26 -0
  173. scipy/datasets/_utils.py +81 -0
  174. scipy/datasets/tests/__init__.py +0 -0
  175. scipy/datasets/tests/test_data.py +128 -0
  176. scipy/differentiate/__init__.py +27 -0
  177. scipy/differentiate/_differentiate.py +1129 -0
  178. scipy/differentiate/tests/__init__.py +0 -0
  179. scipy/differentiate/tests/test_differentiate.py +694 -0
  180. scipy/fft/__init__.py +114 -0
  181. scipy/fft/_backend.py +196 -0
  182. scipy/fft/_basic.py +1650 -0
  183. scipy/fft/_basic_backend.py +197 -0
  184. scipy/fft/_debug_backends.py +22 -0
  185. scipy/fft/_fftlog.py +223 -0
  186. scipy/fft/_fftlog_backend.py +200 -0
  187. scipy/fft/_helper.py +348 -0
  188. scipy/fft/_pocketfft/LICENSE.md +25 -0
  189. scipy/fft/_pocketfft/__init__.py +9 -0
  190. scipy/fft/_pocketfft/basic.py +251 -0
  191. scipy/fft/_pocketfft/helper.py +249 -0
  192. scipy/fft/_pocketfft/pypocketfft.cp312-win_arm64.lib +0 -0
  193. scipy/fft/_pocketfft/pypocketfft.cp312-win_arm64.pyd +0 -0
  194. scipy/fft/_pocketfft/realtransforms.py +109 -0
  195. scipy/fft/_pocketfft/tests/__init__.py +0 -0
  196. scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
  197. scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
  198. scipy/fft/_realtransforms.py +706 -0
  199. scipy/fft/_realtransforms_backend.py +63 -0
  200. scipy/fft/tests/__init__.py +0 -0
  201. scipy/fft/tests/mock_backend.py +96 -0
  202. scipy/fft/tests/test_backend.py +98 -0
  203. scipy/fft/tests/test_basic.py +504 -0
  204. scipy/fft/tests/test_fftlog.py +215 -0
  205. scipy/fft/tests/test_helper.py +558 -0
  206. scipy/fft/tests/test_multithreading.py +84 -0
  207. scipy/fft/tests/test_real_transforms.py +247 -0
  208. scipy/fftpack/__init__.py +103 -0
  209. scipy/fftpack/_basic.py +428 -0
  210. scipy/fftpack/_helper.py +115 -0
  211. scipy/fftpack/_pseudo_diffs.py +554 -0
  212. scipy/fftpack/_realtransforms.py +598 -0
  213. scipy/fftpack/basic.py +20 -0
  214. scipy/fftpack/convolve.cp312-win_arm64.lib +0 -0
  215. scipy/fftpack/convolve.cp312-win_arm64.pyd +0 -0
  216. scipy/fftpack/helper.py +19 -0
  217. scipy/fftpack/pseudo_diffs.py +22 -0
  218. scipy/fftpack/realtransforms.py +19 -0
  219. scipy/fftpack/tests/__init__.py +0 -0
  220. scipy/fftpack/tests/fftw_double_ref.npz +0 -0
  221. scipy/fftpack/tests/fftw_longdouble_ref.npz +0 -0
  222. scipy/fftpack/tests/fftw_single_ref.npz +0 -0
  223. scipy/fftpack/tests/test.npz +0 -0
  224. scipy/fftpack/tests/test_basic.py +877 -0
  225. scipy/fftpack/tests/test_helper.py +54 -0
  226. scipy/fftpack/tests/test_import.py +33 -0
  227. scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
  228. scipy/fftpack/tests/test_real_transforms.py +836 -0
  229. scipy/integrate/__init__.py +122 -0
  230. scipy/integrate/_bvp.py +1160 -0
  231. scipy/integrate/_cubature.py +729 -0
  232. scipy/integrate/_dop.cp312-win_arm64.lib +0 -0
  233. scipy/integrate/_dop.cp312-win_arm64.pyd +0 -0
  234. scipy/integrate/_ivp/__init__.py +8 -0
  235. scipy/integrate/_ivp/base.py +290 -0
  236. scipy/integrate/_ivp/bdf.py +478 -0
  237. scipy/integrate/_ivp/common.py +451 -0
  238. scipy/integrate/_ivp/dop853_coefficients.py +193 -0
  239. scipy/integrate/_ivp/ivp.py +755 -0
  240. scipy/integrate/_ivp/lsoda.py +224 -0
  241. scipy/integrate/_ivp/radau.py +572 -0
  242. scipy/integrate/_ivp/rk.py +601 -0
  243. scipy/integrate/_ivp/tests/__init__.py +0 -0
  244. scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
  245. scipy/integrate/_ivp/tests/test_rk.py +37 -0
  246. scipy/integrate/_lebedev.py +5450 -0
  247. scipy/integrate/_lsoda.cp312-win_arm64.lib +0 -0
  248. scipy/integrate/_lsoda.cp312-win_arm64.pyd +0 -0
  249. scipy/integrate/_ode.py +1395 -0
  250. scipy/integrate/_odepack.cp312-win_arm64.lib +0 -0
  251. scipy/integrate/_odepack.cp312-win_arm64.pyd +0 -0
  252. scipy/integrate/_odepack_py.py +273 -0
  253. scipy/integrate/_quad_vec.py +674 -0
  254. scipy/integrate/_quadpack.cp312-win_arm64.lib +0 -0
  255. scipy/integrate/_quadpack.cp312-win_arm64.pyd +0 -0
  256. scipy/integrate/_quadpack_py.py +1283 -0
  257. scipy/integrate/_quadrature.py +1336 -0
  258. scipy/integrate/_rules/__init__.py +12 -0
  259. scipy/integrate/_rules/_base.py +518 -0
  260. scipy/integrate/_rules/_gauss_kronrod.py +202 -0
  261. scipy/integrate/_rules/_gauss_legendre.py +62 -0
  262. scipy/integrate/_rules/_genz_malik.py +210 -0
  263. scipy/integrate/_tanhsinh.py +1385 -0
  264. scipy/integrate/_test_multivariate.cp312-win_arm64.lib +0 -0
  265. scipy/integrate/_test_multivariate.cp312-win_arm64.pyd +0 -0
  266. scipy/integrate/_test_odeint_banded.cp312-win_arm64.lib +0 -0
  267. scipy/integrate/_test_odeint_banded.cp312-win_arm64.pyd +0 -0
  268. scipy/integrate/_vode.cp312-win_arm64.lib +0 -0
  269. scipy/integrate/_vode.cp312-win_arm64.pyd +0 -0
  270. scipy/integrate/dop.py +15 -0
  271. scipy/integrate/lsoda.py +15 -0
  272. scipy/integrate/odepack.py +17 -0
  273. scipy/integrate/quadpack.py +23 -0
  274. scipy/integrate/tests/__init__.py +0 -0
  275. scipy/integrate/tests/test__quad_vec.py +211 -0
  276. scipy/integrate/tests/test_banded_ode_solvers.py +305 -0
  277. scipy/integrate/tests/test_bvp.py +714 -0
  278. scipy/integrate/tests/test_cubature.py +1375 -0
  279. scipy/integrate/tests/test_integrate.py +840 -0
  280. scipy/integrate/tests/test_odeint_jac.py +74 -0
  281. scipy/integrate/tests/test_quadpack.py +680 -0
  282. scipy/integrate/tests/test_quadrature.py +730 -0
  283. scipy/integrate/tests/test_tanhsinh.py +1171 -0
  284. scipy/integrate/vode.py +15 -0
  285. scipy/interpolate/__init__.py +228 -0
  286. scipy/interpolate/_bary_rational.py +715 -0
  287. scipy/interpolate/_bsplines.py +2469 -0
  288. scipy/interpolate/_cubic.py +973 -0
  289. scipy/interpolate/_dfitpack.cp312-win_arm64.lib +0 -0
  290. scipy/interpolate/_dfitpack.cp312-win_arm64.pyd +0 -0
  291. scipy/interpolate/_dierckx.cp312-win_arm64.lib +0 -0
  292. scipy/interpolate/_dierckx.cp312-win_arm64.pyd +0 -0
  293. scipy/interpolate/_fitpack.cp312-win_arm64.lib +0 -0
  294. scipy/interpolate/_fitpack.cp312-win_arm64.pyd +0 -0
  295. scipy/interpolate/_fitpack2.py +2397 -0
  296. scipy/interpolate/_fitpack_impl.py +811 -0
  297. scipy/interpolate/_fitpack_py.py +898 -0
  298. scipy/interpolate/_fitpack_repro.py +996 -0
  299. scipy/interpolate/_interpnd.cp312-win_arm64.lib +0 -0
  300. scipy/interpolate/_interpnd.cp312-win_arm64.pyd +0 -0
  301. scipy/interpolate/_interpolate.py +2266 -0
  302. scipy/interpolate/_ndbspline.py +415 -0
  303. scipy/interpolate/_ndgriddata.py +329 -0
  304. scipy/interpolate/_pade.py +67 -0
  305. scipy/interpolate/_polyint.py +1025 -0
  306. scipy/interpolate/_ppoly.cp312-win_arm64.lib +0 -0
  307. scipy/interpolate/_ppoly.cp312-win_arm64.pyd +0 -0
  308. scipy/interpolate/_rbf.py +290 -0
  309. scipy/interpolate/_rbfinterp.py +550 -0
  310. scipy/interpolate/_rbfinterp_pythran.cp312-win_arm64.lib +0 -0
  311. scipy/interpolate/_rbfinterp_pythran.cp312-win_arm64.pyd +0 -0
  312. scipy/interpolate/_rgi.py +764 -0
  313. scipy/interpolate/_rgi_cython.cp312-win_arm64.lib +0 -0
  314. scipy/interpolate/_rgi_cython.cp312-win_arm64.pyd +0 -0
  315. scipy/interpolate/dfitpack.py +24 -0
  316. scipy/interpolate/fitpack.py +31 -0
  317. scipy/interpolate/fitpack2.py +29 -0
  318. scipy/interpolate/interpnd.py +24 -0
  319. scipy/interpolate/interpolate.py +30 -0
  320. scipy/interpolate/ndgriddata.py +23 -0
  321. scipy/interpolate/polyint.py +24 -0
  322. scipy/interpolate/rbf.py +18 -0
  323. scipy/interpolate/tests/__init__.py +0 -0
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  1520. scipy/stats/tests/test_survival.py +466 -0
  1521. scipy/stats/tests/test_tukeylambda_stats.py +85 -0
  1522. scipy/stats/tests/test_variation.py +216 -0
  1523. scipy/version.py +12 -0
  1524. scipy-1.16.2.dist-info/DELVEWHEEL +2 -0
  1525. scipy-1.16.2.dist-info/LICENSE.txt +912 -0
  1526. scipy-1.16.2.dist-info/METADATA +1061 -0
  1527. scipy-1.16.2.dist-info/RECORD +1530 -0
  1528. scipy-1.16.2.dist-info/WHEEL +4 -0
  1529. scipy.libs/msvcp140-5f1c5dd31916990d94181e07bc3afb32.dll +0 -0
  1530. scipy.libs/scipy_openblas-f3ac85b1f412f7e86514c923dc4058d1.dll +0 -0
@@ -0,0 +1,996 @@
1
+ """ Replicate FITPACK's logic for constructing smoothing spline functions and curves.
2
+
3
+ Currently provides analogs of splrep and splprep python routines, i.e.
4
+ curfit.f and parcur.f routines (the drivers are fpcurf.f and fppara.f, respectively)
5
+
6
+ The Fortran sources are from
7
+ https://github.com/scipy/scipy/blob/maintenance/1.11.x/scipy/interpolate/fitpack/
8
+
9
+ .. [1] P. Dierckx, "Algorithms for smoothing data with periodic and
10
+ parametric splines, Computer Graphics and Image Processing",
11
+ 20 (1982) 171-184.
12
+ :doi:`10.1016/0146-664X(82)90043-0`.
13
+ .. [2] P. Dierckx, "Curve and surface fitting with splines", Monographs on
14
+ Numerical Analysis, Oxford University Press, 1993.
15
+ .. [3] P. Dierckx, "An algorithm for smoothing, differentiation and integration
16
+ of experimental data using spline functions",
17
+ Journal of Computational and Applied Mathematics, vol. I, no 3, p. 165 (1975).
18
+ https://doi.org/10.1016/0771-050X(75)90034-0
19
+ """
20
+ import warnings
21
+ import operator
22
+ import numpy as np
23
+
24
+ from ._bsplines import (
25
+ _not_a_knot, make_interp_spline, BSpline, fpcheck, _lsq_solve_qr
26
+ )
27
+ from . import _dierckx # type: ignore[attr-defined]
28
+
29
+
30
+ # cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
31
+ # c part 1: determination of the number of knots and their position c
32
+ # c ************************************************************** c
33
+ #
34
+ # https://github.com/scipy/scipy/blob/maintenance/1.11.x/scipy/interpolate/fitpack/fpcurf.f#L31
35
+
36
+
37
+ # Hardcoded in curfit.f
38
+ TOL = 0.001
39
+ MAXIT = 20
40
+
41
+
42
+ def _get_residuals(x, y, t, k, w):
43
+ # FITPACK has (w*(spl(x)-y))**2; make_lsq_spline has w*(spl(x)-y)**2
44
+ w2 = w**2
45
+
46
+ # inline the relevant part of
47
+ # >>> spl = make_lsq_spline(x, y, w=w2, t=t, k=k)
48
+ # NB:
49
+ # 1. y is assumed to be 2D here. For 1D case (parametric=False),
50
+ # the call must have been preceded by y = y[:, None] (cf _validate_inputs)
51
+ # 2. We always sum the squares across axis=1:
52
+ # * For 1D (parametric=False), the last dimension has size one,
53
+ # so the summation is a no-op.
54
+ # * For 2D (parametric=True), the summation is actually how the
55
+ # 'residuals' are defined, see Eq. (42) in Dierckx1982
56
+ # (the reference is in the docstring of `class F`) below.
57
+ _, _, c = _lsq_solve_qr(x, y, t, k, w)
58
+ c = np.ascontiguousarray(c)
59
+ spl = BSpline(t, c, k)
60
+ residuals = _compute_residuals(w2, spl(x), y)
61
+ fp = residuals.sum()
62
+ if np.isnan(fp):
63
+ raise ValueError(_iermesg[1])
64
+ return residuals, fp
65
+
66
+
67
+ def _compute_residuals(w2, splx, y):
68
+ delta = ((splx - y)**2).sum(axis=1)
69
+ return w2 * delta
70
+
71
+
72
+ def add_knot(x, t, k, residuals):
73
+ """Add a new knot.
74
+
75
+ (Approximately) replicate FITPACK's logic:
76
+ 1. split the `x` array into knot intervals, ``t(j+k) <= x(i) <= t(j+k+1)``
77
+ 2. find the interval with the maximum sum of residuals
78
+ 3. insert a new knot into the middle of that interval.
79
+
80
+ NB: a new knot is in fact an `x` value at the middle of the interval.
81
+ So *the knots are a subset of `x`*.
82
+
83
+ This routine is an analog of
84
+ https://github.com/scipy/scipy/blob/v1.11.4/scipy/interpolate/fitpack/fpcurf.f#L190-L215
85
+ (cf _split function)
86
+
87
+ and https://github.com/scipy/scipy/blob/v1.11.4/scipy/interpolate/fitpack/fpknot.f
88
+ """
89
+ new_knot = _dierckx.fpknot(x, t, k, residuals)
90
+
91
+ idx_t = np.searchsorted(t, new_knot)
92
+ t_new = np.r_[t[:idx_t], new_knot, t[idx_t:]]
93
+ return t_new
94
+
95
+
96
+ def _validate_inputs(x, y, w, k, s, xb, xe, parametric):
97
+ """Common input validations for generate_knots and make_splrep.
98
+ """
99
+ x = np.asarray(x, dtype=float)
100
+ y = np.asarray(y, dtype=float)
101
+
102
+ if w is None:
103
+ w = np.ones_like(x, dtype=float)
104
+ else:
105
+ w = np.asarray(w, dtype=float)
106
+ if w.ndim != 1:
107
+ raise ValueError(f"{w.ndim = } not implemented yet.")
108
+ if (w < 0).any():
109
+ raise ValueError("Weights must be non-negative")
110
+
111
+ if y.ndim == 0 or y.ndim > 2:
112
+ raise ValueError(f"{y.ndim = } not supported (must be 1 or 2.)")
113
+
114
+ parametric = bool(parametric)
115
+ if parametric:
116
+ if y.ndim != 2:
117
+ raise ValueError(f"{y.ndim = } != 2 not supported with {parametric =}.")
118
+ else:
119
+ if y.ndim != 1:
120
+ raise ValueError(f"{y.ndim = } != 1 not supported with {parametric =}.")
121
+ # all _impl functions expect y.ndim = 2
122
+ y = y[:, None]
123
+
124
+ if w.shape[0] != x.shape[0]:
125
+ raise ValueError(f"Weights is incompatible: {w.shape =} != {x.shape}.")
126
+
127
+ if x.shape[0] != y.shape[0]:
128
+ raise ValueError(f"Data is incompatible: {x.shape = } and {y.shape = }.")
129
+ if x.ndim != 1 or (x[1:] < x[:-1]).any():
130
+ raise ValueError("Expect `x` to be an ordered 1D sequence.")
131
+
132
+ k = operator.index(k)
133
+
134
+ if s < 0:
135
+ raise ValueError(f"`s` must be non-negative. Got {s = }")
136
+
137
+ if xb is None:
138
+ xb = min(x)
139
+ if xe is None:
140
+ xe = max(x)
141
+
142
+ return x, y, w, k, s, xb, xe
143
+
144
+
145
+ def generate_knots(x, y, *, w=None, xb=None, xe=None, k=3, s=0, nest=None):
146
+ """Generate knot vectors until the Least SQuares (LSQ) criterion is satified.
147
+
148
+ Parameters
149
+ ----------
150
+ x, y : array_like
151
+ The data points defining the curve ``y = f(x)``.
152
+ w : array_like, optional
153
+ Weights.
154
+ xb : float, optional
155
+ The boundary of the approximation interval. If None (default),
156
+ is set to ``x[0]``.
157
+ xe : float, optional
158
+ The boundary of the approximation interval. If None (default),
159
+ is set to ``x[-1]``.
160
+ k : int, optional
161
+ The spline degree. Default is cubic, ``k = 3``.
162
+ s : float, optional
163
+ The smoothing factor. Default is ``s = 0``.
164
+ nest : int, optional
165
+ Stop when at least this many knots are placed.
166
+
167
+ Yields
168
+ ------
169
+ t : ndarray
170
+ Knot vectors with an increasing number of knots.
171
+ The generator is finite: it stops when the smoothing critetion is
172
+ satisfied, or when then number of knots exceeds the maximum value:
173
+ the user-provided `nest` or `x.size + k + 1` --- which is the knot vector
174
+ for the interpolating spline.
175
+
176
+ Examples
177
+ --------
178
+ Generate some noisy data and fit a sequence of LSQ splines:
179
+
180
+ >>> import numpy as np
181
+ >>> import matplotlib.pyplot as plt
182
+ >>> from scipy.interpolate import make_lsq_spline, generate_knots
183
+ >>> rng = np.random.default_rng(12345)
184
+ >>> x = np.linspace(-3, 3, 50)
185
+ >>> y = np.exp(-x**2) + 0.1 * rng.standard_normal(size=50)
186
+
187
+ >>> knots = list(generate_knots(x, y, s=1e-10))
188
+ >>> for t in knots[::3]:
189
+ ... spl = make_lsq_spline(x, y, t)
190
+ ... xs = xs = np.linspace(-3, 3, 201)
191
+ ... plt.plot(xs, spl(xs), '-', label=f'n = {len(t)}', lw=3, alpha=0.7)
192
+ >>> plt.plot(x, y, 'o', label='data')
193
+ >>> plt.plot(xs, np.exp(-xs**2), '--')
194
+ >>> plt.legend()
195
+
196
+ Note that increasing the number of knots make the result follow the data
197
+ more and more closely.
198
+
199
+ Also note that a step of the generator may add multiple knots:
200
+
201
+ >>> [len(t) for t in knots]
202
+ [8, 9, 10, 12, 16, 24, 40, 48, 52, 54]
203
+
204
+ Notes
205
+ -----
206
+ The routine generates successive knots vectors of increasing length, starting
207
+ from ``2*(k+1)`` to ``len(x) + k + 1``, trying to make knots more dense
208
+ in the regions where the deviation of the LSQ spline from data is large.
209
+
210
+ When the maximum number of knots, ``len(x) + k + 1`` is reached
211
+ (this happens when ``s`` is small and ``nest`` is large), the generator
212
+ stops, and the last output is the knots for the interpolation with the
213
+ not-a-knot boundary condition.
214
+
215
+ Knots are located at data sites, unless ``k`` is even and the number of knots
216
+ is ``len(x) + k + 1``. In that case, the last output of the generator
217
+ has internal knots at Greville sites, ``(x[1:] + x[:-1]) / 2``.
218
+
219
+ .. versionadded:: 1.15.0
220
+
221
+ """
222
+ if s == 0:
223
+ if nest is not None or w is not None:
224
+ raise ValueError("s == 0 is interpolation only")
225
+ t = _not_a_knot(x, k)
226
+ yield t
227
+ return
228
+
229
+ x, y, w, k, s, xb, xe = _validate_inputs(
230
+ x, y, w, k, s, xb, xe, parametric=np.ndim(y) == 2
231
+ )
232
+
233
+ yield from _generate_knots_impl(x, y, w=w, xb=xb, xe=xe, k=k, s=s, nest=nest)
234
+
235
+
236
+ def _generate_knots_impl(x, y, *, w=None, xb=None, xe=None, k=3, s=0, nest=None):
237
+
238
+ acc = s * TOL
239
+ m = x.size # the number of data points
240
+
241
+ if nest is None:
242
+ # the max number of knots. This is set in _fitpack_impl.py line 274
243
+ # and fitpack.pyf line 198
244
+ nest = max(m + k + 1, 2*k + 3)
245
+ else:
246
+ if nest < 2*(k + 1):
247
+ raise ValueError(f"`nest` too small: {nest = } < 2*(k+1) = {2*(k+1)}.")
248
+
249
+ nmin = 2*(k + 1) # the number of knots for an LSQ polynomial approximation
250
+ nmax = m + k + 1 # the number of knots for the spline interpolation
251
+
252
+ # start from no internal knots
253
+ t = np.asarray([xb]*(k+1) + [xe]*(k+1), dtype=float)
254
+ n = t.shape[0]
255
+ fp = 0.0
256
+ fpold = 0.0
257
+
258
+ # c main loop for the different sets of knots. m is a safe upper bound
259
+ # c for the number of trials.
260
+ for _ in range(m):
261
+ yield t
262
+
263
+ # construct the LSQ spline with this set of knots
264
+ fpold = fp
265
+ residuals, fp = _get_residuals(x, y, t, k, w=w)
266
+ fpms = fp - s
267
+
268
+ # c test whether the approximation sinf(x) is an acceptable solution.
269
+ # c if f(p=inf) < s accept the choice of knots.
270
+ if (abs(fpms) < acc) or (fpms < 0):
271
+ return
272
+
273
+ # ### c increase the number of knots. ###
274
+
275
+ # c determine the number of knots nplus we are going to add.
276
+ if n == nmin:
277
+ # the first iteration
278
+ nplus = 1
279
+ else:
280
+ delta = fpold - fp
281
+ npl1 = int(nplus * fpms / delta) if delta > acc else nplus*2
282
+ nplus = min(nplus*2, max(npl1, nplus//2, 1))
283
+
284
+ # actually add knots
285
+ for j in range(nplus):
286
+ t = add_knot(x, t, k, residuals)
287
+
288
+ # check if we have enough knots already
289
+
290
+ n = t.shape[0]
291
+ # c if n = nmax, sinf(x) is an interpolating spline.
292
+ # c if n=nmax we locate the knots as for interpolation.
293
+ if n >= nmax:
294
+ t = _not_a_knot(x, k)
295
+ yield t
296
+ return
297
+
298
+ # c if n=nest we cannot increase the number of knots because of
299
+ # c the storage capacity limitation.
300
+ if n >= nest:
301
+ yield t
302
+ return
303
+
304
+ # recompute if needed
305
+ if j < nplus - 1:
306
+ residuals, _ = _get_residuals(x, y, t, k, w=w)
307
+
308
+ # this should never be reached
309
+ return
310
+
311
+
312
+ # cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
313
+ # c part 2: determination of the smoothing spline sp(x). c
314
+ # c *************************************************** c
315
+ # c we have determined the number of knots and their position. c
316
+ # c we now compute the b-spline coefficients of the smoothing spline c
317
+ # c sp(x). the observation matrix a is extended by the rows of matrix c
318
+ # c b expressing that the kth derivative discontinuities of sp(x) at c
319
+ # c the interior knots t(k+2),...t(n-k-1) must be zero. the corres- c
320
+ # c ponding weights of these additional rows are set to 1/p. c
321
+ # c iteratively we then have to determine the value of p such that c
322
+ # c f(p)=sum((w(i)*(y(i)-sp(x(i))))**2) be = s. we already know that c
323
+ # c the least-squares kth degree polynomial corresponds to p=0, and c
324
+ # c that the least-squares spline corresponds to p=infinity. the c
325
+ # c iteration process which is proposed here, makes use of rational c
326
+ # c interpolation. since f(p) is a convex and strictly decreasing c
327
+ # c function of p, it can be approximated by a rational function c
328
+ # c r(p) = (u*p+v)/(p+w). three values of p(p1,p2,p3) with correspond- c
329
+ # c ing values of f(p) (f1=f(p1)-s,f2=f(p2)-s,f3=f(p3)-s) are used c
330
+ # c to calculate the new value of p such that r(p)=s. convergence is c
331
+ # c guaranteed by taking f1>0 and f3<0. c
332
+ # cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
333
+
334
+
335
+ def prodd(t, i, j, k):
336
+ res = 1.0
337
+ for s in range(k+2):
338
+ if i + s != j:
339
+ res *= (t[j] - t[i+s])
340
+ return res
341
+
342
+
343
+ def disc(t, k):
344
+ """Discontinuity matrix: jumps of k-th derivatives of b-splines at internal knots.
345
+
346
+ See Eqs. (9)-(10) of Ref. [1], or, equivalently, Eq. (3.43) of Ref. [2].
347
+
348
+ This routine assumes internal knots are all simple (have multiplicity =1).
349
+
350
+ Parameters
351
+ ----------
352
+ t : ndarray, 1D, shape(n,)
353
+ Knots.
354
+ k : int
355
+ The spline degree
356
+
357
+ Returns
358
+ -------
359
+ disc : ndarray, shape(n-2*k-1, k+2)
360
+ The jumps of the k-th derivatives of b-splines at internal knots,
361
+ ``t[k+1], ...., t[n-k-1]``.
362
+ offset : ndarray, shape(2-2*k-1,)
363
+ Offsets
364
+ nc : int
365
+
366
+ Notes
367
+ -----
368
+
369
+ The normalization here follows FITPACK:
370
+ (https://github.com/scipy/scipy/blob/maintenance/1.11.x/scipy/interpolate/fitpack/fpdisc.f#L36)
371
+
372
+ The k-th derivative jumps are multiplied by a factor::
373
+
374
+ (delta / nrint)**k / k!
375
+
376
+ where ``delta`` is the length of the interval spanned by internal knots, and
377
+ ``nrint`` is one less the number of internal knots (i.e., the number of
378
+ subintervals between them).
379
+
380
+ References
381
+ ----------
382
+ .. [1] Paul Dierckx, Algorithms for smoothing data with periodic and parametric
383
+ splines, Computer Graphics and Image Processing, vol. 20, p. 171 (1982).
384
+ :doi:`10.1016/0146-664X(82)90043-0`
385
+
386
+ .. [2] Tom Lyche and Knut Morken, Spline methods,
387
+ http://www.uio.no/studier/emner/matnat/ifi/INF-MAT5340/v05/undervisningsmateriale/
388
+
389
+ """
390
+ n = t.shape[0]
391
+
392
+ # the length of the base interval spanned by internal knots & the number
393
+ # of subintervas between these internal knots
394
+ delta = t[n - k - 1] - t[k]
395
+ nrint = n - 2*k - 1
396
+
397
+ matr = np.empty((nrint - 1, k + 2), dtype=float)
398
+ for jj in range(nrint - 1):
399
+ j = jj + k + 1
400
+ for ii in range(k + 2):
401
+ i = jj + ii
402
+ matr[jj, ii] = (t[i + k + 1] - t[i]) / prodd(t, i, j, k)
403
+ # NB: equivalent to
404
+ # row = [(t[i + k + 1] - t[i]) / prodd(t, i, j, k) for i in range(j-k-1, j+1)]
405
+ # assert (matr[j-k-1, :] == row).all()
406
+
407
+ # follow FITPACK
408
+ matr *= (delta/ nrint)**k
409
+
410
+ # make it packed
411
+ offset = np.array([i for i in range(nrint-1)], dtype=np.int64)
412
+ nc = n - k - 1
413
+ return matr, offset, nc
414
+
415
+
416
+ class F:
417
+ """ The r.h.s. of ``f(p) = s``.
418
+
419
+ Given scalar `p`, we solve the system of equations in the LSQ sense:
420
+
421
+ | A | @ | c | = | y |
422
+ | B / p | | 0 | | 0 |
423
+
424
+ where `A` is the matrix of b-splines and `b` is the discontinuity matrix
425
+ (the jumps of the k-th derivatives of b-spline basis elements at knots).
426
+
427
+ Since we do that repeatedly while minimizing over `p`, we QR-factorize
428
+ `A` only once and update the QR factorization only of the `B` rows of the
429
+ augmented matrix |A, B/p|.
430
+
431
+ The system of equations is Eq. (15) Ref. [1]_, the strategy and implementation
432
+ follows that of FITPACK, see specific links below.
433
+
434
+ References
435
+ ----------
436
+ [1] P. Dierckx, Algorithms for Smoothing Data with Periodic and Parametric Splines,
437
+ COMPUTER GRAPHICS AND IMAGE PROCESSING vol. 20, pp 171-184 (1982.)
438
+ https://doi.org/10.1016/0146-664X(82)90043-0
439
+
440
+ """
441
+ def __init__(self, x, y, t, k, s, w=None, *, R=None, Y=None):
442
+ self.x = x
443
+ self.y = y
444
+ self.t = t
445
+ self.k = k
446
+ w = np.ones_like(x, dtype=float) if w is None else w
447
+ if w.ndim != 1:
448
+ raise ValueError(f"{w.ndim = } != 1.")
449
+ self.w = w
450
+ self.s = s
451
+
452
+ if y.ndim != 2:
453
+ raise ValueError(f"F: expected y.ndim == 2, got {y.ndim = } instead.")
454
+
455
+ # ### precompute what we can ###
456
+
457
+ # https://github.com/scipy/scipy/blob/maintenance/1.11.x/scipy/interpolate/fitpack/fpcurf.f#L250
458
+ # c evaluate the discontinuity jump of the kth derivative of the
459
+ # c b-splines at the knots t(l),l=k+2,...n-k-1 and store in b.
460
+ b, b_offset, b_nc = disc(t, k)
461
+
462
+ # the QR factorization of the data matrix, if not provided
463
+ # NB: otherwise, must be consistent with x,y & s, but this is not checked
464
+ if R is None and Y is None:
465
+ R, Y, _ = _lsq_solve_qr(x, y, t, k, w)
466
+
467
+ # prepare to combine R and the discontinuity matrix (AB); also r.h.s. (YY)
468
+ # https://github.com/scipy/scipy/blob/maintenance/1.11.x/scipy/interpolate/fitpack/fpcurf.f#L269
469
+ # c the rows of matrix b with weight 1/p are rotated into the
470
+ # c triangularised observation matrix a which is stored in g.
471
+ nc = t.shape[0] - k - 1
472
+ nz = k + 1
473
+ if R.shape[1] != nz:
474
+ raise ValueError(f"Internal error: {R.shape[1] =} != {k+1 =}.")
475
+
476
+ # r.h.s. of the augmented system
477
+ z = np.zeros((b.shape[0], Y.shape[1]), dtype=float)
478
+ self.YY = np.r_[Y[:nc], z]
479
+
480
+ # l.h.s. of the augmented system
481
+ AA = np.zeros((nc + b.shape[0], self.k+2), dtype=float)
482
+ AA[:nc, :nz] = R[:nc, :]
483
+ # AA[nc:, :] = b.a / p # done in __call__(self, p)
484
+ self.AA = AA
485
+ self.offset = np.r_[np.arange(nc, dtype=np.int64), b_offset]
486
+
487
+ self.nc = nc
488
+ self.b = b
489
+
490
+ def __call__(self, p):
491
+ # https://github.com/scipy/scipy/blob/maintenance/1.11.x/scipy/interpolate/fitpack/fpcurf.f#L279
492
+ # c the row of matrix b is rotated into triangle by givens transformation
493
+
494
+ # copy the precomputed matrices over for in-place work
495
+ # R = PackedMatrix(self.AB.a.copy(), self.AB.offset.copy(), nc)
496
+ AB = self.AA.copy()
497
+ offset = self.offset.copy()
498
+ nc = self.nc
499
+
500
+ AB[nc:, :] = self.b / p
501
+ QY = self.YY.copy()
502
+
503
+ # heavy lifting happens here, in-place
504
+ _dierckx.qr_reduce(AB, offset, nc, QY, startrow=nc)
505
+
506
+ # solve for the coefficients
507
+ c = _dierckx.fpback(AB, nc, QY)
508
+
509
+ spl = BSpline(self.t, c, self.k)
510
+ residuals = _compute_residuals(self.w**2, spl(self.x), self.y)
511
+ fp = residuals.sum()
512
+
513
+ self.spl = spl # store it
514
+
515
+ return fp - self.s
516
+
517
+
518
+ def fprati(p1, f1, p2, f2, p3, f3):
519
+ """The root of r(p) = (u*p + v) / (p + w) given three points and values,
520
+ (p1, f2), (p2, f2) and (p3, f3).
521
+
522
+ The FITPACK analog adjusts the bounds, and we do not
523
+ https://github.com/scipy/scipy/blob/maintenance/1.11.x/scipy/interpolate/fitpack/fprati.f
524
+
525
+ NB: FITPACK uses p < 0 to encode p=infinity. We just use the infinity itself.
526
+ Since the bracket is ``p1 <= p2 <= p3``, ``p3`` can be infinite (in fact,
527
+ this is what the minimizer starts with, ``p3=inf``).
528
+ """
529
+ h1 = f1 * (f2 - f3)
530
+ h2 = f2 * (f3 - f1)
531
+ h3 = f3 * (f1 - f2)
532
+ if p3 == np.inf:
533
+ return -(p2*h1 + p1*h2) / h3
534
+ return -(p1*p2*h3 + p2*p3*h1 + p1*p3*h2) / (p1*h1 + p2*h2 + p3*h3)
535
+
536
+
537
+ class Bunch:
538
+ def __init__(self, **kwargs):
539
+ self.__dict__.update(**kwargs)
540
+
541
+
542
+ _iermesg1 = """error. a theoretically impossible result was found during
543
+ the iteration process for finding a smoothing spline with
544
+ fp = s. probably causes : s too small.
545
+ """
546
+
547
+ _iermesg = {
548
+ 1: _iermesg1 + """the weighted sum of squared residuals is becoming NaN
549
+ """,
550
+ 2: _iermesg1 + """there is an approximation returned but the corresponding
551
+ weighted sum of squared residuals does not satisfy the
552
+ condition abs(fp-s)/s < tol.
553
+ """,
554
+ 3: """error. the maximal number of iterations maxit (set to 20
555
+ by the program) allowed for finding a smoothing spline
556
+ with fp=s has been reached. probably causes : s too small
557
+ there is an approximation returned but the corresponding
558
+ weighted sum of squared residuals does not satisfy the
559
+ condition abs(fp-s)/s < tol.
560
+ """
561
+ }
562
+
563
+
564
+ def root_rati(f, p0, bracket, acc):
565
+ """Solve `f(p) = 0` using a rational function approximation.
566
+
567
+ In a nutshell, since the function f(p) is known to be monotonically decreasing, we
568
+ - maintain the bracket (p1, f1), (p2, f2) and (p3, f3)
569
+ - at each iteration step, approximate f(p) by a rational function
570
+ r(p) = (u*p + v) / (p + w)
571
+ and make a step to p_new to the root of f(p): r(p_new) = 0.
572
+ The coefficients u, v and w are found from the bracket values p1..3 and f1...3
573
+
574
+ The algorithm and implementation follows
575
+ https://github.com/scipy/scipy/blob/maintenance/1.11.x/scipy/interpolate/fitpack/fpcurf.f#L229
576
+ and
577
+ https://github.com/scipy/scipy/blob/maintenance/1.11.x/scipy/interpolate/fitpack/fppara.f#L290
578
+
579
+ Note that the latter is for parametric splines and the former is for 1D spline
580
+ functions. The minimization is indentical though [modulo a summation over the
581
+ dimensions in the computation of f(p)], so we reuse the minimizer for both
582
+ d=1 and d>1.
583
+ """
584
+ # Magic values from
585
+ # https://github.com/scipy/scipy/blob/maintenance/1.11.x/scipy/interpolate/fitpack/fpcurf.f#L27
586
+ con1 = 0.1
587
+ con9 = 0.9
588
+ con4 = 0.04
589
+
590
+ # bracketing flags (follow FITPACK)
591
+ # https://github.com/scipy/scipy/blob/maintenance/1.11.x/scipy/interpolate/fitpack/fppara.f#L365
592
+ ich1, ich3 = 0, 0
593
+
594
+ (p1, f1), (p3, f3) = bracket
595
+ p = p0
596
+
597
+ for it in range(MAXIT):
598
+ p2, f2 = p, f(p)
599
+
600
+ # c test whether the approximation sp(x) is an acceptable solution.
601
+ if abs(f2) < acc:
602
+ ier, converged = 0, True
603
+ break
604
+
605
+ # c carry out one more step of the iteration process.
606
+ if ich3 == 0:
607
+ if f2 - f3 <= acc:
608
+ # c our initial choice of p is too large.
609
+ p3 = p2
610
+ f3 = f2
611
+ p = p*con4
612
+ if p <= p1:
613
+ p = p1*con9 + p2*con1
614
+ continue
615
+ else:
616
+ if f2 < 0:
617
+ ich3 = 1
618
+
619
+ if ich1 == 0:
620
+ if f1 - f2 <= acc:
621
+ # c our initial choice of p is too small
622
+ p1 = p2
623
+ f1 = f2
624
+ p = p/con4
625
+ if p3 != np.inf and p <= p3:
626
+ p = p2*con1 + p3*con9
627
+ continue
628
+ else:
629
+ if f2 > 0:
630
+ ich1 = 1
631
+
632
+ # c test whether the iteration process proceeds as theoretically expected.
633
+ # [f(p) should be monotonically decreasing]
634
+ if f1 <= f2 or f2 <= f3:
635
+ ier, converged = 2, False
636
+ break
637
+
638
+ # actually make the iteration step
639
+ p = fprati(p1, f1, p2, f2, p3, f3)
640
+
641
+ # c adjust the value of p1,f1,p3 and f3 such that f1 > 0 and f3 < 0.
642
+ if f2 < 0:
643
+ p3, f3 = p2, f2
644
+ else:
645
+ p1, f1 = p2, f2
646
+
647
+ else:
648
+ # not converged in MAXIT iterations
649
+ ier, converged = 3, False
650
+
651
+ if ier != 0:
652
+ warnings.warn(RuntimeWarning(_iermesg[ier]), stacklevel=2)
653
+
654
+ return Bunch(converged=converged, root=p, iterations=it, ier=ier)
655
+
656
+
657
+ def _make_splrep_impl(x, y, *, w=None, xb=None, xe=None, k=3, s=0, t=None, nest=None):
658
+ """Shared infra for make_splrep and make_splprep.
659
+ """
660
+ acc = s * TOL
661
+ m = x.size # the number of data points
662
+
663
+ if nest is None:
664
+ # the max number of knots. This is set in _fitpack_impl.py line 274
665
+ # and fitpack.pyf line 198
666
+ nest = max(m + k + 1, 2*k + 3)
667
+ else:
668
+ if nest < 2*(k + 1):
669
+ raise ValueError(f"`nest` too small: {nest = } < 2*(k+1) = {2*(k+1)}.")
670
+ if t is not None:
671
+ raise ValueError("Either supply `t` or `nest`.")
672
+
673
+ if t is None:
674
+ gen = _generate_knots_impl(x, y, w=w, k=k, s=s, xb=xb, xe=xe, nest=nest)
675
+ t = list(gen)[-1]
676
+ else:
677
+ fpcheck(x, t, k)
678
+
679
+ if t.shape[0] == 2 * (k + 1):
680
+ # nothing to optimize
681
+ _, _, c = _lsq_solve_qr(x, y, t, k, w)
682
+ return BSpline(t, c, k)
683
+
684
+ ### solve ###
685
+
686
+ # c initial value for p.
687
+ # https://github.com/scipy/scipy/blob/maintenance/1.11.x/scipy/interpolate/fitpack/fpcurf.f#L253
688
+ R, Y, _ = _lsq_solve_qr(x, y, t, k, w)
689
+ nc = t.shape[0] -k -1
690
+ p = nc / R[:, 0].sum()
691
+
692
+ # ### bespoke solver ####
693
+ # initial conditions
694
+ # f(p=inf) : LSQ spline with knots t (XXX: reuse R, c)
695
+ _, fp = _get_residuals(x, y, t, k, w=w)
696
+ fpinf = fp - s
697
+
698
+ # f(p=0): LSQ spline without internal knots
699
+ _, fp0 = _get_residuals(x, y, np.array([xb]*(k+1) + [xe]*(k+1)), k, w)
700
+ fp0 = fp0 - s
701
+
702
+ # solve
703
+ bracket = (0, fp0), (np.inf, fpinf)
704
+ f = F(x, y, t, k=k, s=s, w=w, R=R, Y=Y)
705
+ _ = root_rati(f, p, bracket, acc)
706
+
707
+ # solve ALTERNATIVE: is roughly equivalent, gives slightly different results
708
+ # starting from scratch, that would have probably been tolerable;
709
+ # backwards compatibility dictates that we replicate the FITPACK minimizer though.
710
+ # f = F(x, y, t, k=k, s=s, w=w, R=R, Y=Y)
711
+ # from scipy.optimize import root_scalar
712
+ # res_ = root_scalar(f, x0=p, rtol=acc)
713
+ # assert res_.converged
714
+
715
+ # f.spl is the spline corresponding to the found `p` value
716
+ return f.spl
717
+
718
+
719
+ def make_splrep(x, y, *, w=None, xb=None, xe=None, k=3, s=0, t=None, nest=None):
720
+ r"""Create a smoothing B-spline function with bounded error, minimizing derivative jumps.
721
+
722
+ Given the set of data points ``(x[i], y[i])``, determine a smooth spline
723
+ approximation of degree ``k`` on the interval ``xb <= x <= xe``.
724
+
725
+ Parameters
726
+ ----------
727
+ x, y : array_like, shape (m,)
728
+ The data points defining a curve ``y = f(x)``.
729
+ w : array_like, shape (m,), optional
730
+ Strictly positive 1D array of weights, of the same length as `x` and `y`.
731
+ The weights are used in computing the weighted least-squares spline
732
+ fit. If the errors in the y values have standard-deviation given by the
733
+ vector ``d``, then `w` should be ``1/d``.
734
+ Default is ``np.ones(m)``.
735
+ xb, xe : float, optional
736
+ The interval to fit. If None, these default to ``x[0]`` and ``x[-1]``,
737
+ respectively.
738
+ k : int, optional
739
+ The degree of the spline fit. It is recommended to use cubic splines,
740
+ ``k=3``, which is the default. Even values of `k` should be avoided,
741
+ especially with small `s` values.
742
+ s : float, optional
743
+ The smoothing condition. The amount of smoothness is determined by
744
+ satisfying the LSQ (least-squares) constraint::
745
+
746
+ sum((w * (g(x) - y))**2 ) <= s
747
+
748
+ where ``g(x)`` is the smoothed fit to ``(x, y)``. The user can use `s`
749
+ to control the tradeoff between closeness to data and smoothness of fit.
750
+ Larger `s` means more smoothing while smaller values of `s` indicate less
751
+ smoothing.
752
+ Recommended values of `s` depend on the weights, `w`. If the weights
753
+ represent the inverse of the standard deviation of `y`, then a good `s`
754
+ value should be found in the range ``(m-sqrt(2*m), m+sqrt(2*m))`` where
755
+ ``m`` is the number of datapoints in `x`, `y`, and `w`.
756
+ Default is ``s = 0.0``, i.e. interpolation.
757
+ t : array_like, optional
758
+ The spline knots. If None (default), the knots will be constructed
759
+ automatically.
760
+ There must be at least ``2*k + 2`` and at most ``m + k + 1`` knots.
761
+ nest : int, optional
762
+ The target length of the knot vector. Should be between ``2*(k + 1)``
763
+ (the minimum number of knots for a degree-``k`` spline), and
764
+ ``m + k + 1`` (the number of knots of the interpolating spline).
765
+ The actual number of knots returned by this routine may be slightly
766
+ larger than `nest`.
767
+ Default is None (no limit, add up to ``m + k + 1`` knots).
768
+
769
+ Returns
770
+ -------
771
+ spl : a `BSpline` instance
772
+ For `s=0`, ``spl(x) == y``.
773
+ For non-zero values of `s` the `spl` represents the smoothed approximation
774
+ to `(x, y)`, generally with fewer knots.
775
+
776
+ See Also
777
+ --------
778
+ generate_knots : is used under the hood for generating the knots
779
+ make_splprep : the analog of this routine for parametric curves
780
+ make_interp_spline : construct an interpolating spline (``s = 0``)
781
+ make_lsq_spline : construct the least-squares spline given the knot vector
782
+ splrep : a FITPACK analog of this routine
783
+
784
+ References
785
+ ----------
786
+ .. [1] P. Dierckx, "Algorithms for smoothing data with periodic and
787
+ parametric splines, Computer Graphics and Image Processing",
788
+ 20 (1982) 171-184.
789
+ .. [2] P. Dierckx, "Curve and surface fitting with splines", Monographs on
790
+ Numerical Analysis, Oxford University Press, 1993.
791
+
792
+ Notes
793
+ -----
794
+ This routine constructs the smoothing spline function, :math:`g(x)`, to
795
+ minimize the sum of jumps, :math:`D_j`, of the ``k``-th derivative at the
796
+ internal knots (:math:`x_b < t_i < x_e`), where
797
+
798
+ .. math::
799
+
800
+ D_i = g^{(k)}(t_i + 0) - g^{(k)}(t_i - 0)
801
+
802
+ Specifically, the routine constructs the spline function :math:`g(x)` which
803
+ minimizes
804
+
805
+ .. math::
806
+
807
+ \sum_i | D_i |^2 \to \mathrm{min}
808
+
809
+ provided that
810
+
811
+ .. math::
812
+
813
+ \sum_{j=1}^m (w_j \times (g(x_j) - y_j))^2 \leqslant s ,
814
+
815
+ where :math:`s > 0` is the input parameter.
816
+
817
+ In other words, we balance maximizing the smoothness (measured as the jumps
818
+ of the derivative, the first criterion), and the deviation of :math:`g(x_j)`
819
+ from the data :math:`y_j` (the second criterion).
820
+
821
+ Note that the summation in the second criterion is over all data points,
822
+ and in the first criterion it is over the internal spline knots (i.e.
823
+ those with ``xb < t[i] < xe``). The spline knots are in general a subset
824
+ of data, see `generate_knots` for details.
825
+
826
+ Also note the difference of this routine to `make_lsq_spline`: the latter
827
+ routine does not consider smoothness and simply solves a least-squares
828
+ problem
829
+
830
+ .. math::
831
+
832
+ \sum w_j \times (g(x_j) - y_j)^2 \to \mathrm{min}
833
+
834
+ for a spline function :math:`g(x)` with a _fixed_ knot vector ``t``.
835
+
836
+ .. versionadded:: 1.15.0
837
+ """ # noqa:E501
838
+ if s == 0:
839
+ if t is not None or w is not None or nest is not None:
840
+ raise ValueError("s==0 is for interpolation only")
841
+ return make_interp_spline(x, y, k=k)
842
+
843
+ x, y, w, k, s, xb, xe = _validate_inputs(x, y, w, k, s, xb, xe, parametric=False)
844
+
845
+ spl = _make_splrep_impl(x, y, w=w, xb=xb, xe=xe, k=k, s=s, t=t, nest=nest)
846
+
847
+ # postprocess: squeeze out the last dimension: was added to simplify the internals.
848
+ spl.c = spl.c[:, 0]
849
+ return spl
850
+
851
+
852
+ def make_splprep(x, *, w=None, u=None, ub=None, ue=None, k=3, s=0, t=None, nest=None):
853
+ r"""
854
+ Create a smoothing parametric B-spline curve with bounded error, minimizing derivative jumps.
855
+
856
+ Given a list of N 1D arrays, `x`, which represent a curve in
857
+ N-dimensional space parametrized by `u`, find a smooth approximating
858
+ spline curve ``g(u)``.
859
+
860
+ Parameters
861
+ ----------
862
+ x : array_like, shape (m, ndim)
863
+ Sampled data points representing the curve in ``ndim`` dimensions.
864
+ The typical use is a list of 1D arrays, each of length ``m``.
865
+ w : array_like, shape(m,), optional
866
+ Strictly positive 1D array of weights.
867
+ The weights are used in computing the weighted least-squares spline
868
+ fit. If the errors in the `x` values have standard deviation given by
869
+ the vector d, then `w` should be 1/d. Default is ``np.ones(m)``.
870
+ u : array_like, optional
871
+ An array of parameter values for the curve in the parametric form.
872
+ If not given, these values are calculated automatically, according to::
873
+
874
+ v[0] = 0
875
+ v[i] = v[i-1] + distance(x[i], x[i-1])
876
+ u[i] = v[i] / v[-1]
877
+
878
+ ub, ue : float, optional
879
+ The end-points of the parameters interval. Default to ``u[0]`` and ``u[-1]``.
880
+ k : int, optional
881
+ Degree of the spline. Cubic splines, ``k=3``, are recommended.
882
+ Even values of `k` should be avoided especially with a small ``s`` value.
883
+ Default is ``k=3``
884
+ s : float, optional
885
+ A smoothing condition. The amount of smoothness is determined by
886
+ satisfying the conditions::
887
+
888
+ sum((w * (g(u) - x))**2) <= s,
889
+
890
+ where ``g(u)`` is the smoothed approximation to ``x``. The user can
891
+ use `s` to control the trade-off between closeness and smoothness
892
+ of fit. Larger ``s`` means more smoothing while smaller values of ``s``
893
+ indicate less smoothing.
894
+ Recommended values of ``s`` depend on the weights, ``w``. If the weights
895
+ represent the inverse of the standard deviation of ``x``, then a good
896
+ ``s`` value should be found in the range ``(m - sqrt(2*m), m + sqrt(2*m))``,
897
+ where ``m`` is the number of data points in ``x`` and ``w``.
898
+ t : array_like, optional
899
+ The spline knots. If None (default), the knots will be constructed
900
+ automatically.
901
+ There must be at least ``2*k + 2`` and at most ``m + k + 1`` knots.
902
+ nest : int, optional
903
+ The target length of the knot vector. Should be between ``2*(k + 1)``
904
+ (the minimum number of knots for a degree-``k`` spline), and
905
+ ``m + k + 1`` (the number of knots of the interpolating spline).
906
+ The actual number of knots returned by this routine may be slightly
907
+ larger than `nest`.
908
+ Default is None (no limit, add up to ``m + k + 1`` knots).
909
+
910
+ Returns
911
+ -------
912
+ spl : a `BSpline` instance
913
+ For `s=0`, ``spl(u) == x``.
914
+ For non-zero values of ``s``, `spl` represents the smoothed approximation
915
+ to ``x``, generally with fewer knots.
916
+ u : ndarray
917
+ The values of the parameters
918
+
919
+ See Also
920
+ --------
921
+ generate_knots : is used under the hood for generating the knots
922
+ make_splrep : the analog of this routine 1D functions
923
+ make_interp_spline : construct an interpolating spline (``s = 0``)
924
+ make_lsq_spline : construct the least-squares spline given the knot vector
925
+ splprep : a FITPACK analog of this routine
926
+
927
+ Notes
928
+ -----
929
+ Given a set of :math:`m` data points in :math:`D` dimensions, :math:`\vec{x}_j`,
930
+ with :math:`j=1, ..., m` and :math:`\vec{x}_j = (x_{j; 1}, ..., x_{j; D})`,
931
+ this routine constructs the parametric spline curve :math:`g_a(u)` with
932
+ :math:`a=1, ..., D`, to minimize the sum of jumps, :math:`D_{i; a}`, of the
933
+ ``k``-th derivative at the internal knots (:math:`u_b < t_i < u_e`), where
934
+
935
+ .. math::
936
+
937
+ D_{i; a} = g_a^{(k)}(t_i + 0) - g_a^{(k)}(t_i - 0)
938
+
939
+ Specifically, the routine constructs the spline function :math:`g(u)` which
940
+ minimizes
941
+
942
+ .. math::
943
+
944
+ \sum_i \sum_{a=1}^D | D_{i; a} |^2 \to \mathrm{min}
945
+
946
+ provided that
947
+
948
+ .. math::
949
+
950
+ \sum_{j=1}^m \sum_{a=1}^D (w_j \times (g_a(u_j) - x_{j; a}))^2 \leqslant s
951
+
952
+ where :math:`u_j` is the value of the parameter corresponding to the data point
953
+ :math:`(x_{j; 1}, ..., x_{j; D})`, and :math:`s > 0` is the input parameter.
954
+
955
+ In other words, we balance maximizing the smoothness (measured as the jumps
956
+ of the derivative, the first criterion), and the deviation of :math:`g(u_j)`
957
+ from the data :math:`x_j` (the second criterion).
958
+
959
+ Note that the summation in the second criterion is over all data points,
960
+ and in the first criterion it is over the internal spline knots (i.e.
961
+ those with ``ub < t[i] < ue``). The spline knots are in general a subset
962
+ of data, see `generate_knots` for details.
963
+
964
+ .. versionadded:: 1.15.0
965
+
966
+ References
967
+ ----------
968
+ .. [1] P. Dierckx, "Algorithms for smoothing data with periodic and
969
+ parametric splines, Computer Graphics and Image Processing",
970
+ 20 (1982) 171-184.
971
+ .. [2] P. Dierckx, "Curve and surface fitting with splines", Monographs on
972
+ Numerical Analysis, Oxford University Press, 1993.
973
+ """ # noqa:E501
974
+ x = np.stack(x, axis=1)
975
+
976
+ # construct the default parametrization of the curve
977
+ if u is None:
978
+ dp = (x[1:, :] - x[:-1, :])**2
979
+ u = np.sqrt((dp).sum(axis=1)).cumsum()
980
+ u = np.r_[0, u / u[-1]]
981
+
982
+ if s == 0:
983
+ if t is not None or w is not None or nest is not None:
984
+ raise ValueError("s==0 is for interpolation only")
985
+ return make_interp_spline(u, x.T, k=k, axis=1), u
986
+
987
+ u, x, w, k, s, ub, ue = _validate_inputs(u, x, w, k, s, ub, ue, parametric=True)
988
+
989
+ spl = _make_splrep_impl(u, x, w=w, xb=ub, xe=ue, k=k, s=s, t=t, nest=nest)
990
+
991
+ # posprocess: `axis=1` so that spl(u).shape == np.shape(x)
992
+ # when `x` is a list of 1D arrays (cf original splPrep)
993
+ cc = spl.c.T
994
+ spl1 = BSpline(spl.t, cc, spl.k, axis=1)
995
+
996
+ return spl1, u