scipy 1.16.2__cp312-cp312-win_arm64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scipy/__config__.py +161 -0
- scipy/__init__.py +150 -0
- scipy/_cyutility.cp312-win_arm64.lib +0 -0
- scipy/_cyutility.cp312-win_arm64.pyd +0 -0
- scipy/_distributor_init.py +18 -0
- scipy/_lib/__init__.py +14 -0
- scipy/_lib/_array_api.py +931 -0
- scipy/_lib/_array_api_compat_vendor.py +9 -0
- scipy/_lib/_array_api_no_0d.py +103 -0
- scipy/_lib/_bunch.py +229 -0
- scipy/_lib/_ccallback.py +251 -0
- scipy/_lib/_ccallback_c.cp312-win_arm64.lib +0 -0
- scipy/_lib/_ccallback_c.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_disjoint_set.py +254 -0
- scipy/_lib/_docscrape.py +761 -0
- scipy/_lib/_elementwise_iterative_method.py +346 -0
- scipy/_lib/_fpumode.cp312-win_arm64.lib +0 -0
- scipy/_lib/_fpumode.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_gcutils.py +105 -0
- scipy/_lib/_pep440.py +487 -0
- scipy/_lib/_sparse.py +41 -0
- scipy/_lib/_test_ccallback.cp312-win_arm64.lib +0 -0
- scipy/_lib/_test_ccallback.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_call.cp312-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_call.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_def.cp312-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_def.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_testutils.py +373 -0
- scipy/_lib/_threadsafety.py +58 -0
- scipy/_lib/_tmpdirs.py +86 -0
- scipy/_lib/_uarray/LICENSE +29 -0
- scipy/_lib/_uarray/__init__.py +116 -0
- scipy/_lib/_uarray/_backend.py +707 -0
- scipy/_lib/_uarray/_uarray.cp312-win_arm64.lib +0 -0
- scipy/_lib/_uarray/_uarray.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_util.py +1283 -0
- scipy/_lib/array_api_compat/__init__.py +22 -0
- scipy/_lib/array_api_compat/_internal.py +59 -0
- scipy/_lib/array_api_compat/common/__init__.py +1 -0
- scipy/_lib/array_api_compat/common/_aliases.py +727 -0
- scipy/_lib/array_api_compat/common/_fft.py +213 -0
- scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
- scipy/_lib/array_api_compat/common/_linalg.py +232 -0
- scipy/_lib/array_api_compat/common/_typing.py +192 -0
- scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
- scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
- scipy/_lib/array_api_compat/cupy/_info.py +336 -0
- scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
- scipy/_lib/array_api_compat/cupy/fft.py +36 -0
- scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
- scipy/_lib/array_api_compat/dask/__init__.py +0 -0
- scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
- scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
- scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
- scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
- scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
- scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
- scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
- scipy/_lib/array_api_compat/numpy/_info.py +366 -0
- scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
- scipy/_lib/array_api_compat/numpy/fft.py +35 -0
- scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
- scipy/_lib/array_api_compat/torch/__init__.py +22 -0
- scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
- scipy/_lib/array_api_compat/torch/_info.py +369 -0
- scipy/_lib/array_api_compat/torch/_typing.py +3 -0
- scipy/_lib/array_api_compat/torch/fft.py +85 -0
- scipy/_lib/array_api_compat/torch/linalg.py +121 -0
- scipy/_lib/array_api_extra/__init__.py +38 -0
- scipy/_lib/array_api_extra/_delegation.py +171 -0
- scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_at.py +463 -0
- scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
- scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
- scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
- scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
- scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
- scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
- scipy/_lib/array_api_extra/testing.py +359 -0
- scipy/_lib/cobyqa/__init__.py +20 -0
- scipy/_lib/cobyqa/framework.py +1240 -0
- scipy/_lib/cobyqa/main.py +1506 -0
- scipy/_lib/cobyqa/models.py +1529 -0
- scipy/_lib/cobyqa/problem.py +1296 -0
- scipy/_lib/cobyqa/settings.py +132 -0
- scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
- scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
- scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
- scipy/_lib/cobyqa/utils/__init__.py +18 -0
- scipy/_lib/cobyqa/utils/exceptions.py +22 -0
- scipy/_lib/cobyqa/utils/math.py +77 -0
- scipy/_lib/cobyqa/utils/versions.py +67 -0
- scipy/_lib/decorator.py +399 -0
- scipy/_lib/deprecation.py +274 -0
- scipy/_lib/doccer.py +366 -0
- scipy/_lib/messagestream.cp312-win_arm64.lib +0 -0
- scipy/_lib/messagestream.cp312-win_arm64.pyd +0 -0
- scipy/_lib/pyprima/__init__.py +212 -0
- scipy/_lib/pyprima/cobyla/__init__.py +0 -0
- scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
- scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
- scipy/_lib/pyprima/cobyla/geometry.py +226 -0
- scipy/_lib/pyprima/cobyla/initialize.py +215 -0
- scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
- scipy/_lib/pyprima/cobyla/update.py +289 -0
- scipy/_lib/pyprima/common/__init__.py +0 -0
- scipy/_lib/pyprima/common/_bounds.py +34 -0
- scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
- scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
- scipy/_lib/pyprima/common/_project.py +173 -0
- scipy/_lib/pyprima/common/checkbreak.py +93 -0
- scipy/_lib/pyprima/common/consts.py +47 -0
- scipy/_lib/pyprima/common/evaluate.py +99 -0
- scipy/_lib/pyprima/common/history.py +38 -0
- scipy/_lib/pyprima/common/infos.py +30 -0
- scipy/_lib/pyprima/common/linalg.py +435 -0
- scipy/_lib/pyprima/common/message.py +290 -0
- scipy/_lib/pyprima/common/powalg.py +131 -0
- scipy/_lib/pyprima/common/preproc.py +277 -0
- scipy/_lib/pyprima/common/present.py +5 -0
- scipy/_lib/pyprima/common/ratio.py +54 -0
- scipy/_lib/pyprima/common/redrho.py +47 -0
- scipy/_lib/pyprima/common/selectx.py +296 -0
- scipy/_lib/tests/__init__.py +0 -0
- scipy/_lib/tests/test__gcutils.py +110 -0
- scipy/_lib/tests/test__pep440.py +67 -0
- scipy/_lib/tests/test__testutils.py +32 -0
- scipy/_lib/tests/test__threadsafety.py +51 -0
- scipy/_lib/tests/test__util.py +641 -0
- scipy/_lib/tests/test_array_api.py +322 -0
- scipy/_lib/tests/test_bunch.py +169 -0
- scipy/_lib/tests/test_ccallback.py +196 -0
- scipy/_lib/tests/test_config.py +45 -0
- scipy/_lib/tests/test_deprecation.py +10 -0
- scipy/_lib/tests/test_doccer.py +143 -0
- scipy/_lib/tests/test_import_cycles.py +18 -0
- scipy/_lib/tests/test_public_api.py +482 -0
- scipy/_lib/tests/test_scipy_version.py +28 -0
- scipy/_lib/tests/test_tmpdirs.py +48 -0
- scipy/_lib/tests/test_warnings.py +137 -0
- scipy/_lib/uarray.py +31 -0
- scipy/cluster/__init__.py +31 -0
- scipy/cluster/_hierarchy.cp312-win_arm64.lib +0 -0
- scipy/cluster/_hierarchy.cp312-win_arm64.pyd +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp312-win_arm64.lib +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp312-win_arm64.pyd +0 -0
- scipy/cluster/_vq.cp312-win_arm64.lib +0 -0
- scipy/cluster/_vq.cp312-win_arm64.pyd +0 -0
- scipy/cluster/hierarchy.py +4348 -0
- scipy/cluster/tests/__init__.py +0 -0
- scipy/cluster/tests/hierarchy_test_data.py +145 -0
- scipy/cluster/tests/test_disjoint_set.py +202 -0
- scipy/cluster/tests/test_hierarchy.py +1238 -0
- scipy/cluster/tests/test_vq.py +434 -0
- scipy/cluster/vq.py +832 -0
- scipy/conftest.py +683 -0
- scipy/constants/__init__.py +358 -0
- scipy/constants/_codata.py +2266 -0
- scipy/constants/_constants.py +369 -0
- scipy/constants/codata.py +21 -0
- scipy/constants/constants.py +53 -0
- scipy/constants/tests/__init__.py +0 -0
- scipy/constants/tests/test_codata.py +78 -0
- scipy/constants/tests/test_constants.py +83 -0
- scipy/datasets/__init__.py +90 -0
- scipy/datasets/_download_all.py +71 -0
- scipy/datasets/_fetchers.py +225 -0
- scipy/datasets/_registry.py +26 -0
- scipy/datasets/_utils.py +81 -0
- scipy/datasets/tests/__init__.py +0 -0
- scipy/datasets/tests/test_data.py +128 -0
- scipy/differentiate/__init__.py +27 -0
- scipy/differentiate/_differentiate.py +1129 -0
- scipy/differentiate/tests/__init__.py +0 -0
- scipy/differentiate/tests/test_differentiate.py +694 -0
- scipy/fft/__init__.py +114 -0
- scipy/fft/_backend.py +196 -0
- scipy/fft/_basic.py +1650 -0
- scipy/fft/_basic_backend.py +197 -0
- scipy/fft/_debug_backends.py +22 -0
- scipy/fft/_fftlog.py +223 -0
- scipy/fft/_fftlog_backend.py +200 -0
- scipy/fft/_helper.py +348 -0
- scipy/fft/_pocketfft/LICENSE.md +25 -0
- scipy/fft/_pocketfft/__init__.py +9 -0
- scipy/fft/_pocketfft/basic.py +251 -0
- scipy/fft/_pocketfft/helper.py +249 -0
- scipy/fft/_pocketfft/pypocketfft.cp312-win_arm64.lib +0 -0
- scipy/fft/_pocketfft/pypocketfft.cp312-win_arm64.pyd +0 -0
- scipy/fft/_pocketfft/realtransforms.py +109 -0
- scipy/fft/_pocketfft/tests/__init__.py +0 -0
- scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
- scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
- scipy/fft/_realtransforms.py +706 -0
- scipy/fft/_realtransforms_backend.py +63 -0
- scipy/fft/tests/__init__.py +0 -0
- scipy/fft/tests/mock_backend.py +96 -0
- scipy/fft/tests/test_backend.py +98 -0
- scipy/fft/tests/test_basic.py +504 -0
- scipy/fft/tests/test_fftlog.py +215 -0
- scipy/fft/tests/test_helper.py +558 -0
- scipy/fft/tests/test_multithreading.py +84 -0
- scipy/fft/tests/test_real_transforms.py +247 -0
- scipy/fftpack/__init__.py +103 -0
- scipy/fftpack/_basic.py +428 -0
- scipy/fftpack/_helper.py +115 -0
- scipy/fftpack/_pseudo_diffs.py +554 -0
- scipy/fftpack/_realtransforms.py +598 -0
- scipy/fftpack/basic.py +20 -0
- scipy/fftpack/convolve.cp312-win_arm64.lib +0 -0
- scipy/fftpack/convolve.cp312-win_arm64.pyd +0 -0
- scipy/fftpack/helper.py +19 -0
- scipy/fftpack/pseudo_diffs.py +22 -0
- scipy/fftpack/realtransforms.py +19 -0
- scipy/fftpack/tests/__init__.py +0 -0
- scipy/fftpack/tests/fftw_double_ref.npz +0 -0
- scipy/fftpack/tests/fftw_longdouble_ref.npz +0 -0
- scipy/fftpack/tests/fftw_single_ref.npz +0 -0
- scipy/fftpack/tests/test.npz +0 -0
- scipy/fftpack/tests/test_basic.py +877 -0
- scipy/fftpack/tests/test_helper.py +54 -0
- scipy/fftpack/tests/test_import.py +33 -0
- scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
- scipy/fftpack/tests/test_real_transforms.py +836 -0
- scipy/integrate/__init__.py +122 -0
- scipy/integrate/_bvp.py +1160 -0
- scipy/integrate/_cubature.py +729 -0
- scipy/integrate/_dop.cp312-win_arm64.lib +0 -0
- scipy/integrate/_dop.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_ivp/__init__.py +8 -0
- scipy/integrate/_ivp/base.py +290 -0
- scipy/integrate/_ivp/bdf.py +478 -0
- scipy/integrate/_ivp/common.py +451 -0
- scipy/integrate/_ivp/dop853_coefficients.py +193 -0
- scipy/integrate/_ivp/ivp.py +755 -0
- scipy/integrate/_ivp/lsoda.py +224 -0
- scipy/integrate/_ivp/radau.py +572 -0
- scipy/integrate/_ivp/rk.py +601 -0
- scipy/integrate/_ivp/tests/__init__.py +0 -0
- scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
- scipy/integrate/_ivp/tests/test_rk.py +37 -0
- scipy/integrate/_lebedev.py +5450 -0
- scipy/integrate/_lsoda.cp312-win_arm64.lib +0 -0
- scipy/integrate/_lsoda.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_ode.py +1395 -0
- scipy/integrate/_odepack.cp312-win_arm64.lib +0 -0
- scipy/integrate/_odepack.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_odepack_py.py +273 -0
- scipy/integrate/_quad_vec.py +674 -0
- scipy/integrate/_quadpack.cp312-win_arm64.lib +0 -0
- scipy/integrate/_quadpack.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_quadpack_py.py +1283 -0
- scipy/integrate/_quadrature.py +1336 -0
- scipy/integrate/_rules/__init__.py +12 -0
- scipy/integrate/_rules/_base.py +518 -0
- scipy/integrate/_rules/_gauss_kronrod.py +202 -0
- scipy/integrate/_rules/_gauss_legendre.py +62 -0
- scipy/integrate/_rules/_genz_malik.py +210 -0
- scipy/integrate/_tanhsinh.py +1385 -0
- scipy/integrate/_test_multivariate.cp312-win_arm64.lib +0 -0
- scipy/integrate/_test_multivariate.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_test_odeint_banded.cp312-win_arm64.lib +0 -0
- scipy/integrate/_test_odeint_banded.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_vode.cp312-win_arm64.lib +0 -0
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- scipy/integrate/lsoda.py +15 -0
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- scipy/integrate/quadpack.py +23 -0
- scipy/integrate/tests/__init__.py +0 -0
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- scipy/integrate/tests/test_banded_ode_solvers.py +305 -0
- scipy/integrate/tests/test_bvp.py +714 -0
- scipy/integrate/tests/test_cubature.py +1375 -0
- scipy/integrate/tests/test_integrate.py +840 -0
- scipy/integrate/tests/test_odeint_jac.py +74 -0
- scipy/integrate/tests/test_quadpack.py +680 -0
- scipy/integrate/tests/test_quadrature.py +730 -0
- scipy/integrate/tests/test_tanhsinh.py +1171 -0
- scipy/integrate/vode.py +15 -0
- scipy/interpolate/__init__.py +228 -0
- scipy/interpolate/_bary_rational.py +715 -0
- scipy/interpolate/_bsplines.py +2469 -0
- scipy/interpolate/_cubic.py +973 -0
- scipy/interpolate/_dfitpack.cp312-win_arm64.lib +0 -0
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- scipy/io/_fast_matrix_market/__init__.py +600 -0
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results = [list(self._run_one_test(
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sig_kwargs_keys=sig_kwargs_keys, **kwargs)) for tc in tests]
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atol = tols.get('tol', tols['xtol'])
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cvgd = [elt for elt in results if elt[1].converged]
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approx = [elt[1].root for elt in cvgd]
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correct = [elt[0] for elt in cvgd]
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# See if the root matches the reference value
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notclose = [[a] + elt for a, c, elt in zip(approx, correct, cvgd) if
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not isclose(a, c, rtol=rtol, atol=atol)
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and elt[-1]['ID'] not in known_fail]
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# If not, evaluate the function and see if is 0 at the purported root
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fvs = [tc['f'](aroot, *tc.get('args', tuple()))
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for aroot, c, fullout, tc in notclose]
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notclose = [[fv] + elt for fv, elt in zip(fvs, notclose) if fv != 0]
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assert_equal([notclose, len(notclose)], [[], 0])
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+
method_from_result = [result[1].method for result in results]
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expected_method = [name for _ in results]
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assert_equal(method_from_result, expected_method)
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155
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+
|
156
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+
def run_collection(self, collection, method, name, smoothness=None,
|
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+
known_fail=None, **kwargs):
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+
r"""Run a collection of tests using the specified method.
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+
|
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The name is used to determine some optional arguments."""
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tests = get_tests(collection, smoothness=smoothness)
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self.run_tests(tests, method, name, known_fail=known_fail, **kwargs)
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+
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+
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+
class TestBracketMethods(TestScalarRootFinders):
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+
@pytest.mark.parametrize('method', bracket_methods)
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+
@pytest.mark.parametrize('function', tstutils_functions)
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+
def test_basic_root_scalar(self, method, function):
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+
# Tests bracketing root finders called via `root_scalar` on a small
|
170
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+
# set of simple problems, each of which has a root at `x=1`. Checks for
|
171
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+
# converged status and that the root was found.
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+
a, b = .5, sqrt(3)
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+
|
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r = root_scalar(function, method=method.__name__, bracket=[a, b], x0=a,
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+
xtol=self.xtol, rtol=self.rtol)
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+
assert r.converged
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assert_allclose(r.root, 1.0, atol=self.xtol, rtol=self.rtol)
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+
assert r.method == method.__name__
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+
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+
@pytest.mark.parametrize('method', bracket_methods)
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+
@pytest.mark.parametrize('function', tstutils_functions)
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+
def test_basic_individual(self, method, function):
|
183
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+
# Tests individual bracketing root finders on a small set of simple
|
184
|
+
# problems, each of which has a root at `x=1`. Checks for converged
|
185
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+
# status and that the root was found.
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+
a, b = .5, sqrt(3)
|
187
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+
root, r = method(function, a, b, xtol=self.xtol, rtol=self.rtol,
|
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+
full_output=True)
|
189
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+
|
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+
assert r.converged
|
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+
assert_allclose(root, 1.0, atol=self.xtol, rtol=self.rtol)
|
192
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+
|
193
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+
@pytest.mark.parametrize('method', bracket_methods)
|
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+
@pytest.mark.parametrize('function', tstutils_functions)
|
195
|
+
def test_bracket_is_array(self, method, function):
|
196
|
+
# Test bracketing root finders called via `root_scalar` on a small set
|
197
|
+
# of simple problems, each of which has a root at `x=1`. Check that
|
198
|
+
# passing `bracket` as a `ndarray` is accepted and leads to finding the
|
199
|
+
# correct root.
|
200
|
+
a, b = .5, sqrt(3)
|
201
|
+
r = root_scalar(function, method=method.__name__,
|
202
|
+
bracket=np.array([a, b]), x0=a, xtol=self.xtol,
|
203
|
+
rtol=self.rtol)
|
204
|
+
assert r.converged
|
205
|
+
assert_allclose(r.root, 1.0, atol=self.xtol, rtol=self.rtol)
|
206
|
+
assert r.method == method.__name__
|
207
|
+
|
208
|
+
@pytest.mark.parametrize('method', bracket_methods)
|
209
|
+
def test_aps_collection(self, method):
|
210
|
+
self.run_collection('aps', method, method.__name__, smoothness=1)
|
211
|
+
|
212
|
+
@pytest.mark.parametrize('method', [zeros.bisect, zeros.ridder,
|
213
|
+
zeros.toms748])
|
214
|
+
def test_chandrupatla_collection(self, method):
|
215
|
+
known_fail = {'fun7.4'} if method == zeros.ridder else {}
|
216
|
+
self.run_collection('chandrupatla', method, method.__name__,
|
217
|
+
known_fail=known_fail)
|
218
|
+
|
219
|
+
@pytest.mark.parametrize('method', bracket_methods)
|
220
|
+
def test_lru_cached_individual(self, method):
|
221
|
+
# check that https://github.com/scipy/scipy/issues/10846 is fixed
|
222
|
+
# (`root_scalar` failed when passed a function that was `@lru_cache`d)
|
223
|
+
a, b = -1, 1
|
224
|
+
root, r = method(f_lrucached, a, b, full_output=True)
|
225
|
+
assert r.converged
|
226
|
+
assert_allclose(root, 0)
|
227
|
+
|
228
|
+
def test_gh_22934(self):
|
229
|
+
with pytest.raises(ValueError, match="maxiter must be >= 0"):
|
230
|
+
zeros.brentq(lambda x: x**2 - 1, -2, 0, maxiter=-1)
|
231
|
+
|
232
|
+
|
233
|
+
class TestNewton(TestScalarRootFinders):
|
234
|
+
def test_newton_collections(self):
|
235
|
+
known_fail = ['aps.13.00']
|
236
|
+
known_fail += ['aps.12.05', 'aps.12.17'] # fails under Windows Py27
|
237
|
+
for collection in ['aps', 'complex']:
|
238
|
+
self.run_collection(collection, zeros.newton, 'newton',
|
239
|
+
smoothness=2, known_fail=known_fail)
|
240
|
+
|
241
|
+
def test_halley_collections(self):
|
242
|
+
known_fail = ['aps.12.06', 'aps.12.07', 'aps.12.08', 'aps.12.09',
|
243
|
+
'aps.12.10', 'aps.12.11', 'aps.12.12', 'aps.12.13',
|
244
|
+
'aps.12.14', 'aps.12.15', 'aps.12.16', 'aps.12.17',
|
245
|
+
'aps.12.18', 'aps.13.00']
|
246
|
+
for collection in ['aps', 'complex']:
|
247
|
+
self.run_collection(collection, zeros.newton, 'halley',
|
248
|
+
smoothness=2, known_fail=known_fail)
|
249
|
+
|
250
|
+
def test_newton(self):
|
251
|
+
for f, f_1, f_2 in [(f1, f1_1, f1_2), (f2, f2_1, f2_2)]:
|
252
|
+
x = zeros.newton(f, 3, tol=1e-6)
|
253
|
+
assert_allclose(f(x), 0, atol=1e-6)
|
254
|
+
x = zeros.newton(f, 3, x1=5, tol=1e-6) # secant, x0 and x1
|
255
|
+
assert_allclose(f(x), 0, atol=1e-6)
|
256
|
+
x = zeros.newton(f, 3, fprime=f_1, tol=1e-6) # newton
|
257
|
+
assert_allclose(f(x), 0, atol=1e-6)
|
258
|
+
x = zeros.newton(f, 3, fprime=f_1, fprime2=f_2, tol=1e-6) # halley
|
259
|
+
assert_allclose(f(x), 0, atol=1e-6)
|
260
|
+
|
261
|
+
def test_newton_by_name(self):
|
262
|
+
r"""Invoke newton through root_scalar()"""
|
263
|
+
for f, f_1, f_2 in [(f1, f1_1, f1_2), (f2, f2_1, f2_2)]:
|
264
|
+
r = root_scalar(f, method='newton', x0=3, fprime=f_1, xtol=1e-6)
|
265
|
+
assert_allclose(f(r.root), 0, atol=1e-6)
|
266
|
+
for f, f_1, f_2 in [(f1, f1_1, f1_2), (f2, f2_1, f2_2)]:
|
267
|
+
r = root_scalar(f, method='newton', x0=3, xtol=1e-6) # without f'
|
268
|
+
assert_allclose(f(r.root), 0, atol=1e-6)
|
269
|
+
|
270
|
+
def test_secant_by_name(self):
|
271
|
+
r"""Invoke secant through root_scalar()"""
|
272
|
+
for f, f_1, f_2 in [(f1, f1_1, f1_2), (f2, f2_1, f2_2)]:
|
273
|
+
r = root_scalar(f, method='secant', x0=3, x1=2, xtol=1e-6)
|
274
|
+
assert_allclose(f(r.root), 0, atol=1e-6)
|
275
|
+
r = root_scalar(f, method='secant', x0=3, x1=5, xtol=1e-6)
|
276
|
+
assert_allclose(f(r.root), 0, atol=1e-6)
|
277
|
+
for f, f_1, f_2 in [(f1, f1_1, f1_2), (f2, f2_1, f2_2)]:
|
278
|
+
r = root_scalar(f, method='secant', x0=3, xtol=1e-6) # without x1
|
279
|
+
assert_allclose(f(r.root), 0, atol=1e-6)
|
280
|
+
|
281
|
+
def test_halley_by_name(self):
|
282
|
+
r"""Invoke halley through root_scalar()"""
|
283
|
+
for f, f_1, f_2 in [(f1, f1_1, f1_2), (f2, f2_1, f2_2)]:
|
284
|
+
r = root_scalar(f, method='halley', x0=3,
|
285
|
+
fprime=f_1, fprime2=f_2, xtol=1e-6)
|
286
|
+
assert_allclose(f(r.root), 0, atol=1e-6)
|
287
|
+
|
288
|
+
def test_root_scalar_fail(self):
|
289
|
+
message = 'fprime2 must be specified for halley'
|
290
|
+
with pytest.raises(ValueError, match=message):
|
291
|
+
root_scalar(f1, method='halley', fprime=f1_1, x0=3, xtol=1e-6) # no fprime2
|
292
|
+
message = 'fprime must be specified for halley'
|
293
|
+
with pytest.raises(ValueError, match=message):
|
294
|
+
root_scalar(f1, method='halley', fprime2=f1_2, x0=3, xtol=1e-6) # no fprime
|
295
|
+
|
296
|
+
def test_array_newton(self):
|
297
|
+
"""test newton with array"""
|
298
|
+
|
299
|
+
def f1(x, *a):
|
300
|
+
b = a[0] + x * a[3]
|
301
|
+
return a[1] - a[2] * (np.exp(b / a[5]) - 1.0) - b / a[4] - x
|
302
|
+
|
303
|
+
def f1_1(x, *a):
|
304
|
+
b = a[3] / a[5]
|
305
|
+
return -a[2] * np.exp(a[0] / a[5] + x * b) * b - a[3] / a[4] - 1
|
306
|
+
|
307
|
+
def f1_2(x, *a):
|
308
|
+
b = a[3] / a[5]
|
309
|
+
return -a[2] * np.exp(a[0] / a[5] + x * b) * b**2
|
310
|
+
|
311
|
+
a0 = np.array([
|
312
|
+
5.32725221, 5.48673747, 5.49539973,
|
313
|
+
5.36387202, 4.80237316, 1.43764452,
|
314
|
+
5.23063958, 5.46094772, 5.50512718,
|
315
|
+
5.42046290
|
316
|
+
])
|
317
|
+
a1 = (np.sin(range(10)) + 1.0) * 7.0
|
318
|
+
args = (a0, a1, 1e-09, 0.004, 10, 0.27456)
|
319
|
+
x0 = [7.0] * 10
|
320
|
+
x = zeros.newton(f1, x0, f1_1, args)
|
321
|
+
x_expected = (
|
322
|
+
6.17264965, 11.7702805, 12.2219954,
|
323
|
+
7.11017681, 1.18151293, 0.143707955,
|
324
|
+
4.31928228, 10.5419107, 12.7552490,
|
325
|
+
8.91225749
|
326
|
+
)
|
327
|
+
assert_allclose(x, x_expected)
|
328
|
+
# test halley's
|
329
|
+
x = zeros.newton(f1, x0, f1_1, args, fprime2=f1_2)
|
330
|
+
assert_allclose(x, x_expected)
|
331
|
+
# test secant
|
332
|
+
x = zeros.newton(f1, x0, args=args)
|
333
|
+
assert_allclose(x, x_expected)
|
334
|
+
|
335
|
+
def test_array_newton_complex(self):
|
336
|
+
def f(x):
|
337
|
+
return x + 1+1j
|
338
|
+
|
339
|
+
def fprime(x):
|
340
|
+
return 1.0
|
341
|
+
|
342
|
+
t = np.full(4, 1j)
|
343
|
+
x = zeros.newton(f, t, fprime=fprime)
|
344
|
+
assert_allclose(f(x), 0.)
|
345
|
+
|
346
|
+
# should work even if x0 is not complex
|
347
|
+
t = np.ones(4)
|
348
|
+
x = zeros.newton(f, t, fprime=fprime)
|
349
|
+
assert_allclose(f(x), 0.)
|
350
|
+
|
351
|
+
x = zeros.newton(f, t)
|
352
|
+
assert_allclose(f(x), 0.)
|
353
|
+
|
354
|
+
def test_array_secant_active_zero_der(self):
|
355
|
+
"""test secant doesn't continue to iterate zero derivatives"""
|
356
|
+
x = zeros.newton(lambda x, *a: x*x - a[0], x0=[4.123, 5],
|
357
|
+
args=[np.array([17, 25])])
|
358
|
+
assert_allclose(x, (4.123105625617661, 5.0))
|
359
|
+
|
360
|
+
def test_array_newton_integers(self):
|
361
|
+
# test secant with float
|
362
|
+
x = zeros.newton(lambda y, z: z - y ** 2, [4.0] * 2,
|
363
|
+
args=([15.0, 17.0],))
|
364
|
+
assert_allclose(x, (3.872983346207417, 4.123105625617661))
|
365
|
+
# test integer becomes float
|
366
|
+
x = zeros.newton(lambda y, z: z - y ** 2, [4] * 2, args=([15, 17],))
|
367
|
+
assert_allclose(x, (3.872983346207417, 4.123105625617661))
|
368
|
+
|
369
|
+
@pytest.mark.thread_unsafe
|
370
|
+
def test_array_newton_zero_der_failures(self):
|
371
|
+
# test derivative zero warning
|
372
|
+
assert_warns(RuntimeWarning, zeros.newton,
|
373
|
+
lambda y: y**2 - 2, [0., 0.], lambda y: 2 * y)
|
374
|
+
# test failures and zero_der
|
375
|
+
with pytest.warns(RuntimeWarning):
|
376
|
+
results = zeros.newton(lambda y: y**2 - 2, [0., 0.],
|
377
|
+
lambda y: 2*y, full_output=True)
|
378
|
+
assert_allclose(results.root, 0)
|
379
|
+
assert results.zero_der.all()
|
380
|
+
assert not results.converged.any()
|
381
|
+
|
382
|
+
def test_newton_combined(self):
|
383
|
+
def f1(x):
|
384
|
+
return x ** 2 - 2 * x - 1
|
385
|
+
def f1_1(x):
|
386
|
+
return 2 * x - 2
|
387
|
+
def f1_2(x):
|
388
|
+
return 2.0 + 0 * x
|
389
|
+
|
390
|
+
def f1_and_p_and_pp(x):
|
391
|
+
return x**2 - 2*x-1, 2*x-2, 2.0
|
392
|
+
|
393
|
+
sol0 = root_scalar(f1, method='newton', x0=3, fprime=f1_1)
|
394
|
+
sol = root_scalar(f1_and_p_and_pp, method='newton', x0=3, fprime=True)
|
395
|
+
assert_allclose(sol0.root, sol.root, atol=1e-8)
|
396
|
+
assert_equal(2*sol.function_calls, sol0.function_calls)
|
397
|
+
|
398
|
+
sol0 = root_scalar(f1, method='halley', x0=3, fprime=f1_1, fprime2=f1_2)
|
399
|
+
sol = root_scalar(f1_and_p_and_pp, method='halley', x0=3, fprime2=True)
|
400
|
+
assert_allclose(sol0.root, sol.root, atol=1e-8)
|
401
|
+
assert_equal(3*sol.function_calls, sol0.function_calls)
|
402
|
+
|
403
|
+
def test_newton_full_output(self, capsys):
|
404
|
+
# Test the full_output capability, both when converging and not.
|
405
|
+
# Use simple polynomials, to avoid hitting platform dependencies
|
406
|
+
# (e.g., exp & trig) in number of iterations
|
407
|
+
|
408
|
+
x0 = 3
|
409
|
+
expected_counts = [(6, 7), (5, 10), (3, 9)]
|
410
|
+
|
411
|
+
for derivs in range(3):
|
412
|
+
kwargs = {'tol': 1e-6, 'full_output': True, }
|
413
|
+
for k, v in [['fprime', f1_1], ['fprime2', f1_2]][:derivs]:
|
414
|
+
kwargs[k] = v
|
415
|
+
|
416
|
+
x, r = zeros.newton(f1, x0, disp=False, **kwargs)
|
417
|
+
assert_(r.converged)
|
418
|
+
assert_equal(x, r.root)
|
419
|
+
assert_equal((r.iterations, r.function_calls), expected_counts[derivs])
|
420
|
+
if derivs == 0:
|
421
|
+
assert r.function_calls <= r.iterations + 1
|
422
|
+
else:
|
423
|
+
assert_equal(r.function_calls, (derivs + 1) * r.iterations)
|
424
|
+
|
425
|
+
# Now repeat, allowing one fewer iteration to force convergence failure
|
426
|
+
iters = r.iterations - 1
|
427
|
+
x, r = zeros.newton(f1, x0, maxiter=iters, disp=False, **kwargs)
|
428
|
+
assert_(not r.converged)
|
429
|
+
assert_equal(x, r.root)
|
430
|
+
assert_equal(r.iterations, iters)
|
431
|
+
|
432
|
+
if derivs == 1:
|
433
|
+
# Check that the correct Exception is raised and
|
434
|
+
# validate the start of the message.
|
435
|
+
msg = f'Failed to converge after {iters} iterations, value is .*'
|
436
|
+
with pytest.raises(RuntimeError, match=msg):
|
437
|
+
x, r = zeros.newton(f1, x0, maxiter=iters, disp=True, **kwargs)
|
438
|
+
|
439
|
+
@pytest.mark.thread_unsafe
|
440
|
+
def test_deriv_zero_warning(self):
|
441
|
+
def func(x):
|
442
|
+
return x ** 2 - 2.0
|
443
|
+
def dfunc(x):
|
444
|
+
return 2 * x
|
445
|
+
assert_warns(RuntimeWarning, zeros.newton, func, 0.0, dfunc, disp=False)
|
446
|
+
with pytest.raises(RuntimeError, match='Derivative was zero'):
|
447
|
+
zeros.newton(func, 0.0, dfunc)
|
448
|
+
|
449
|
+
def test_newton_does_not_modify_x0(self):
|
450
|
+
# https://github.com/scipy/scipy/issues/9964
|
451
|
+
x0 = np.array([0.1, 3])
|
452
|
+
x0_copy = x0.copy() # Copy to test for equality.
|
453
|
+
newton(np.sin, x0, np.cos)
|
454
|
+
assert_array_equal(x0, x0_copy)
|
455
|
+
|
456
|
+
def test_gh17570_defaults(self):
|
457
|
+
# Previously, when fprime was not specified, root_scalar would default
|
458
|
+
# to secant. When x1 was not specified, secant failed.
|
459
|
+
# Check that without fprime, the default is secant if x1 is specified
|
460
|
+
# and newton otherwise.
|
461
|
+
# Also confirm that `x` is always a scalar (gh-21148)
|
462
|
+
def f(x):
|
463
|
+
assert np.isscalar(x)
|
464
|
+
return f1(x)
|
465
|
+
|
466
|
+
res_newton_default = root_scalar(f, method='newton', x0=3, xtol=1e-6)
|
467
|
+
res_secant_default = root_scalar(f, method='secant', x0=3, x1=2,
|
468
|
+
xtol=1e-6)
|
469
|
+
# `newton` uses the secant method when `x1` and `x2` are specified
|
470
|
+
res_secant = newton(f, x0=3, x1=2, tol=1e-6, full_output=True)[1]
|
471
|
+
|
472
|
+
# all three found a root
|
473
|
+
assert_allclose(f(res_newton_default.root), 0, atol=1e-6)
|
474
|
+
assert res_newton_default.root.shape == tuple()
|
475
|
+
assert_allclose(f(res_secant_default.root), 0, atol=1e-6)
|
476
|
+
assert res_secant_default.root.shape == tuple()
|
477
|
+
assert_allclose(f(res_secant.root), 0, atol=1e-6)
|
478
|
+
assert res_secant.root.shape == tuple()
|
479
|
+
|
480
|
+
# Defaults are correct
|
481
|
+
assert (res_secant_default.root
|
482
|
+
== res_secant.root
|
483
|
+
!= res_newton_default.iterations)
|
484
|
+
assert (res_secant_default.iterations
|
485
|
+
== res_secant_default.function_calls - 1 # true for secant
|
486
|
+
== res_secant.iterations
|
487
|
+
!= res_newton_default.iterations
|
488
|
+
== res_newton_default.function_calls/2) # newton 2-point diff
|
489
|
+
|
490
|
+
@pytest.mark.parametrize('kwargs', [dict(), {'method': 'newton'}])
|
491
|
+
def test_args_gh19090(self, kwargs):
|
492
|
+
def f(x, a, b):
|
493
|
+
assert a == 3
|
494
|
+
assert b == 1
|
495
|
+
return (x ** a - b)
|
496
|
+
|
497
|
+
res = optimize.root_scalar(f, x0=3, args=(3, 1), **kwargs)
|
498
|
+
assert res.converged
|
499
|
+
assert_allclose(res.root, 1)
|
500
|
+
|
501
|
+
@pytest.mark.parametrize('method', ['secant', 'newton'])
|
502
|
+
def test_int_x0_gh19280(self, method):
|
503
|
+
# Originally, `newton` ensured that only floats were passed to the
|
504
|
+
# callable. This was inadvertently changed by gh-17669. Check that
|
505
|
+
# it has been changed back.
|
506
|
+
def f(x):
|
507
|
+
# an integer raised to a negative integer power would fail
|
508
|
+
return x**-2 - 2
|
509
|
+
|
510
|
+
res = optimize.root_scalar(f, x0=1, method=method)
|
511
|
+
assert res.converged
|
512
|
+
assert_allclose(abs(res.root), 2**-0.5)
|
513
|
+
assert res.root.dtype == np.dtype(np.float64)
|
514
|
+
|
515
|
+
def test_newton_special_parameters(self):
|
516
|
+
# give zeros.newton() some strange parameters
|
517
|
+
# and check whether an exception appears
|
518
|
+
with pytest.raises(ValueError, match="tol too small"):
|
519
|
+
zeros.newton(f1, 3, tol=-1e-6)
|
520
|
+
|
521
|
+
with pytest.raises(ValueError, match="maxiter must be greater than 0"):
|
522
|
+
zeros.newton(f1, 3, tol=1e-6, maxiter=-50)
|
523
|
+
|
524
|
+
with pytest.raises(ValueError, match="x1 and x0 must be different" ):
|
525
|
+
zeros.newton(f1, 3, x1=3)
|
526
|
+
|
527
|
+
|
528
|
+
def test_gh_5555():
|
529
|
+
root = 0.1
|
530
|
+
|
531
|
+
def f(x):
|
532
|
+
return x - root
|
533
|
+
|
534
|
+
methods = [zeros.bisect, zeros.ridder]
|
535
|
+
xtol = rtol = TOL
|
536
|
+
for method in methods:
|
537
|
+
res = method(f, -1e8, 1e7, xtol=xtol, rtol=rtol)
|
538
|
+
assert_allclose(root, res, atol=xtol, rtol=rtol,
|
539
|
+
err_msg=f'method {method.__name__}')
|
540
|
+
|
541
|
+
|
542
|
+
def test_gh_5557():
|
543
|
+
# Show that without the changes in 5557 brentq and brenth might
|
544
|
+
# only achieve a tolerance of 2*(xtol + rtol*|res|).
|
545
|
+
|
546
|
+
# f linearly interpolates (0, -0.1), (0.5, -0.1), and (1,
|
547
|
+
# 0.4). The important parts are that |f(0)| < |f(1)| (so that
|
548
|
+
# brent takes 0 as the initial guess), |f(0)| < atol (so that
|
549
|
+
# brent accepts 0 as the root), and that the exact root of f lies
|
550
|
+
# more than atol away from 0 (so that brent doesn't achieve the
|
551
|
+
# desired tolerance).
|
552
|
+
def f(x):
|
553
|
+
if x < 0.5:
|
554
|
+
return -0.1
|
555
|
+
else:
|
556
|
+
return x - 0.6
|
557
|
+
|
558
|
+
atol = 0.51
|
559
|
+
rtol = 4 * _FLOAT_EPS
|
560
|
+
methods = [zeros.brentq, zeros.brenth]
|
561
|
+
for method in methods:
|
562
|
+
res = method(f, 0, 1, xtol=atol, rtol=rtol)
|
563
|
+
assert_allclose(0.6, res, atol=atol, rtol=rtol)
|
564
|
+
|
565
|
+
|
566
|
+
def test_brent_underflow_in_root_bracketing():
|
567
|
+
# Testing if an interval [a,b] brackets a zero of a function
|
568
|
+
# by checking f(a)*f(b) < 0 is not reliable when the product
|
569
|
+
# underflows/overflows. (reported in issue# 13737)
|
570
|
+
|
571
|
+
underflow_scenario = (-450.0, -350.0, -400.0)
|
572
|
+
overflow_scenario = (350.0, 450.0, 400.0)
|
573
|
+
|
574
|
+
for a, b, root in [underflow_scenario, overflow_scenario]:
|
575
|
+
c = np.exp(root)
|
576
|
+
for method in [zeros.brenth, zeros.brentq]:
|
577
|
+
res = method(lambda x: np.exp(x)-c, a, b)
|
578
|
+
assert_allclose(root, res)
|
579
|
+
|
580
|
+
|
581
|
+
class TestRootResults:
|
582
|
+
r = zeros.RootResults(root=1.0, iterations=44, function_calls=46, flag=0,
|
583
|
+
method="newton")
|
584
|
+
|
585
|
+
def test_repr(self):
|
586
|
+
expected_repr = (" converged: True\n flag: converged"
|
587
|
+
"\n function_calls: 46\n iterations: 44\n"
|
588
|
+
" root: 1.0\n method: newton")
|
589
|
+
assert_equal(repr(self.r), expected_repr)
|
590
|
+
|
591
|
+
def test_type(self):
|
592
|
+
assert isinstance(self.r, OptimizeResult)
|
593
|
+
|
594
|
+
|
595
|
+
def test_complex_halley():
|
596
|
+
"""Test Halley's works with complex roots"""
|
597
|
+
def f(x, *a):
|
598
|
+
return a[0] * x**2 + a[1] * x + a[2]
|
599
|
+
|
600
|
+
def f_1(x, *a):
|
601
|
+
return 2 * a[0] * x + a[1]
|
602
|
+
|
603
|
+
def f_2(x, *a):
|
604
|
+
retval = 2 * a[0]
|
605
|
+
try:
|
606
|
+
size = len(x)
|
607
|
+
except TypeError:
|
608
|
+
return retval
|
609
|
+
else:
|
610
|
+
return [retval] * size
|
611
|
+
|
612
|
+
z = complex(1.0, 2.0)
|
613
|
+
coeffs = (2.0, 3.0, 4.0)
|
614
|
+
y = zeros.newton(f, z, args=coeffs, fprime=f_1, fprime2=f_2, tol=1e-6)
|
615
|
+
# (-0.75000000000000078+1.1989578808281789j)
|
616
|
+
assert_allclose(f(y, *coeffs), 0, atol=1e-6)
|
617
|
+
z = [z] * 10
|
618
|
+
coeffs = (2.0, 3.0, 4.0)
|
619
|
+
y = zeros.newton(f, z, args=coeffs, fprime=f_1, fprime2=f_2, tol=1e-6)
|
620
|
+
assert_allclose(f(y, *coeffs), 0, atol=1e-6)
|
621
|
+
|
622
|
+
|
623
|
+
@pytest.mark.thread_unsafe
|
624
|
+
def test_zero_der_nz_dp(capsys):
|
625
|
+
"""Test secant method with a non-zero dp, but an infinite newton step"""
|
626
|
+
# pick a symmetrical functions and choose a point on the side that with dx
|
627
|
+
# makes a secant that is a flat line with zero slope, EG: f = (x - 100)**2,
|
628
|
+
# which has a root at x = 100 and is symmetrical around the line x = 100
|
629
|
+
# we have to pick a really big number so that it is consistently true
|
630
|
+
# now find a point on each side so that the secant has a zero slope
|
631
|
+
dx = np.finfo(float).eps ** 0.33
|
632
|
+
# 100 - p0 = p1 - 100 = p0 * (1 + dx) + dx - 100
|
633
|
+
# -> 200 = p0 * (2 + dx) + dx
|
634
|
+
p0 = (200.0 - dx) / (2.0 + dx)
|
635
|
+
with suppress_warnings() as sup:
|
636
|
+
sup.filter(RuntimeWarning, "RMS of")
|
637
|
+
x = zeros.newton(lambda y: (y - 100.0)**2, x0=[p0] * 10)
|
638
|
+
assert_allclose(x, [100] * 10)
|
639
|
+
# test scalar cases too
|
640
|
+
p0 = (2.0 - 1e-4) / (2.0 + 1e-4)
|
641
|
+
with suppress_warnings() as sup:
|
642
|
+
sup.filter(RuntimeWarning, "Tolerance of")
|
643
|
+
x = zeros.newton(lambda y: (y - 1.0) ** 2, x0=p0, disp=False)
|
644
|
+
assert_allclose(x, 1)
|
645
|
+
with pytest.raises(RuntimeError, match='Tolerance of'):
|
646
|
+
x = zeros.newton(lambda y: (y - 1.0) ** 2, x0=p0, disp=True)
|
647
|
+
p0 = (-2.0 + 1e-4) / (2.0 + 1e-4)
|
648
|
+
with suppress_warnings() as sup:
|
649
|
+
sup.filter(RuntimeWarning, "Tolerance of")
|
650
|
+
x = zeros.newton(lambda y: (y + 1.0) ** 2, x0=p0, disp=False)
|
651
|
+
assert_allclose(x, -1)
|
652
|
+
with pytest.raises(RuntimeError, match='Tolerance of'):
|
653
|
+
x = zeros.newton(lambda y: (y + 1.0) ** 2, x0=p0, disp=True)
|
654
|
+
|
655
|
+
|
656
|
+
@pytest.mark.thread_unsafe
|
657
|
+
def test_array_newton_failures():
|
658
|
+
"""Test that array newton fails as expected"""
|
659
|
+
# p = 0.68 # [MPa]
|
660
|
+
# dp = -0.068 * 1e6 # [Pa]
|
661
|
+
# T = 323 # [K]
|
662
|
+
diameter = 0.10 # [m]
|
663
|
+
# L = 100 # [m]
|
664
|
+
roughness = 0.00015 # [m]
|
665
|
+
rho = 988.1 # [kg/m**3]
|
666
|
+
mu = 5.4790e-04 # [Pa*s]
|
667
|
+
u = 2.488 # [m/s]
|
668
|
+
reynolds_number = rho * u * diameter / mu # Reynolds number
|
669
|
+
|
670
|
+
def colebrook_eqn(darcy_friction, re, dia):
|
671
|
+
return (1 / np.sqrt(darcy_friction) +
|
672
|
+
2 * np.log10(roughness / 3.7 / dia +
|
673
|
+
2.51 / re / np.sqrt(darcy_friction)))
|
674
|
+
|
675
|
+
# only some failures
|
676
|
+
with pytest.warns(RuntimeWarning):
|
677
|
+
result = zeros.newton(
|
678
|
+
colebrook_eqn, x0=[0.01, 0.2, 0.02223, 0.3], maxiter=2,
|
679
|
+
args=[reynolds_number, diameter], full_output=True
|
680
|
+
)
|
681
|
+
assert not result.converged.all()
|
682
|
+
# they all fail
|
683
|
+
with pytest.raises(RuntimeError):
|
684
|
+
result = zeros.newton(
|
685
|
+
colebrook_eqn, x0=[0.01] * 2, maxiter=2,
|
686
|
+
args=[reynolds_number, diameter], full_output=True
|
687
|
+
)
|
688
|
+
|
689
|
+
|
690
|
+
# this test should **not** raise a RuntimeWarning
|
691
|
+
def test_gh8904_zeroder_at_root_fails():
|
692
|
+
"""Test that Newton or Halley don't warn if zero derivative at root"""
|
693
|
+
|
694
|
+
# a function that has a zero derivative at it's root
|
695
|
+
def f_zeroder_root(x):
|
696
|
+
return x**3 - x**2
|
697
|
+
|
698
|
+
# should work with secant
|
699
|
+
r = zeros.newton(f_zeroder_root, x0=0)
|
700
|
+
assert_allclose(r, 0, atol=zeros._xtol, rtol=zeros._rtol)
|
701
|
+
# test again with array
|
702
|
+
r = zeros.newton(f_zeroder_root, x0=[0]*10)
|
703
|
+
assert_allclose(r, 0, atol=zeros._xtol, rtol=zeros._rtol)
|
704
|
+
|
705
|
+
# 1st derivative
|
706
|
+
def fder(x):
|
707
|
+
return 3 * x**2 - 2 * x
|
708
|
+
|
709
|
+
# 2nd derivative
|
710
|
+
def fder2(x):
|
711
|
+
return 6*x - 2
|
712
|
+
|
713
|
+
# should work with newton and halley
|
714
|
+
r = zeros.newton(f_zeroder_root, x0=0, fprime=fder)
|
715
|
+
assert_allclose(r, 0, atol=zeros._xtol, rtol=zeros._rtol)
|
716
|
+
r = zeros.newton(f_zeroder_root, x0=0, fprime=fder,
|
717
|
+
fprime2=fder2)
|
718
|
+
assert_allclose(r, 0, atol=zeros._xtol, rtol=zeros._rtol)
|
719
|
+
# test again with array
|
720
|
+
r = zeros.newton(f_zeroder_root, x0=[0]*10, fprime=fder)
|
721
|
+
assert_allclose(r, 0, atol=zeros._xtol, rtol=zeros._rtol)
|
722
|
+
r = zeros.newton(f_zeroder_root, x0=[0]*10, fprime=fder,
|
723
|
+
fprime2=fder2)
|
724
|
+
assert_allclose(r, 0, atol=zeros._xtol, rtol=zeros._rtol)
|
725
|
+
|
726
|
+
# also test that if a root is found we do not raise RuntimeWarning even if
|
727
|
+
# the derivative is zero, EG: at x = 0.5, then fval = -0.125 and
|
728
|
+
# fder = -0.25 so the next guess is 0.5 - (-0.125/-0.5) = 0 which is the
|
729
|
+
# root, but if the solver continued with that guess, then it will calculate
|
730
|
+
# a zero derivative, so it should return the root w/o RuntimeWarning
|
731
|
+
r = zeros.newton(f_zeroder_root, x0=0.5, fprime=fder)
|
732
|
+
assert_allclose(r, 0, atol=zeros._xtol, rtol=zeros._rtol)
|
733
|
+
# test again with array
|
734
|
+
r = zeros.newton(f_zeroder_root, x0=[0.5]*10, fprime=fder)
|
735
|
+
assert_allclose(r, 0, atol=zeros._xtol, rtol=zeros._rtol)
|
736
|
+
# doesn't apply to halley
|
737
|
+
|
738
|
+
|
739
|
+
def test_gh_8881():
|
740
|
+
r"""Test that Halley's method realizes that the 2nd order adjustment
|
741
|
+
is too big and drops off to the 1st order adjustment."""
|
742
|
+
n = 9
|
743
|
+
|
744
|
+
def f(x):
|
745
|
+
return power(x, 1.0/n) - power(n, 1.0/n)
|
746
|
+
|
747
|
+
def fp(x):
|
748
|
+
return power(x, (1.0-n)/n)/n
|
749
|
+
|
750
|
+
def fpp(x):
|
751
|
+
return power(x, (1.0-2*n)/n) * (1.0/n) * (1.0-n)/n
|
752
|
+
|
753
|
+
x0 = 0.1
|
754
|
+
# The root is at x=9.
|
755
|
+
# The function has positive slope, x0 < root.
|
756
|
+
# Newton succeeds in 8 iterations
|
757
|
+
rt, r = newton(f, x0, fprime=fp, full_output=True)
|
758
|
+
assert r.converged
|
759
|
+
# Before the Issue 8881/PR 8882, halley would send x in the wrong direction.
|
760
|
+
# Check that it now succeeds.
|
761
|
+
rt, r = newton(f, x0, fprime=fp, fprime2=fpp, full_output=True)
|
762
|
+
assert r.converged
|
763
|
+
|
764
|
+
|
765
|
+
def test_gh_9608_preserve_array_shape():
|
766
|
+
"""
|
767
|
+
Test that shape is preserved for array inputs even if fprime or fprime2 is
|
768
|
+
scalar
|
769
|
+
"""
|
770
|
+
def f(x):
|
771
|
+
return x**2
|
772
|
+
|
773
|
+
def fp(x):
|
774
|
+
return 2 * x
|
775
|
+
|
776
|
+
def fpp(x):
|
777
|
+
return 2
|
778
|
+
|
779
|
+
x0 = np.array([-2], dtype=np.float32)
|
780
|
+
rt, r = newton(f, x0, fprime=fp, fprime2=fpp, full_output=True)
|
781
|
+
assert r.converged
|
782
|
+
|
783
|
+
x0_array = np.array([-2, -3], dtype=np.float32)
|
784
|
+
# This next invocation should fail
|
785
|
+
with pytest.raises(IndexError):
|
786
|
+
result = zeros.newton(
|
787
|
+
f, x0_array, fprime=fp, fprime2=fpp, full_output=True
|
788
|
+
)
|
789
|
+
|
790
|
+
def fpp_array(x):
|
791
|
+
return np.full(np.shape(x), 2, dtype=np.float32)
|
792
|
+
|
793
|
+
result = zeros.newton(
|
794
|
+
f, x0_array, fprime=fp, fprime2=fpp_array, full_output=True
|
795
|
+
)
|
796
|
+
assert result.converged.all()
|
797
|
+
|
798
|
+
|
799
|
+
@pytest.mark.parametrize(
|
800
|
+
"maximum_iterations,flag_expected",
|
801
|
+
[(10, zeros.CONVERR), (100, zeros.CONVERGED)])
|
802
|
+
def test_gh9254_flag_if_maxiter_exceeded(maximum_iterations, flag_expected):
|
803
|
+
"""
|
804
|
+
Test that if the maximum iterations is exceeded that the flag is not
|
805
|
+
converged.
|
806
|
+
"""
|
807
|
+
result = zeros.brentq(
|
808
|
+
lambda x: ((1.2*x - 2.3)*x + 3.4)*x - 4.5,
|
809
|
+
-30, 30, (), 1e-6, 1e-6, maximum_iterations,
|
810
|
+
full_output=True, disp=False)
|
811
|
+
assert result[1].flag == flag_expected
|
812
|
+
if flag_expected == zeros.CONVERR:
|
813
|
+
# didn't converge because exceeded maximum iterations
|
814
|
+
assert result[1].iterations == maximum_iterations
|
815
|
+
elif flag_expected == zeros.CONVERGED:
|
816
|
+
# converged before maximum iterations
|
817
|
+
assert result[1].iterations < maximum_iterations
|
818
|
+
|
819
|
+
|
820
|
+
@pytest.mark.thread_unsafe
|
821
|
+
def test_gh9551_raise_error_if_disp_true():
|
822
|
+
"""Test that if disp is true then zero derivative raises RuntimeError"""
|
823
|
+
|
824
|
+
def f(x):
|
825
|
+
return x*x + 1
|
826
|
+
|
827
|
+
def f_p(x):
|
828
|
+
return 2*x
|
829
|
+
|
830
|
+
assert_warns(RuntimeWarning, zeros.newton, f, 1.0, f_p, disp=False)
|
831
|
+
with pytest.raises(
|
832
|
+
RuntimeError,
|
833
|
+
match=r'^Derivative was zero\. Failed to converge after \d+ iterations, '
|
834
|
+
r'value is [+-]?\d*\.\d+\.$'):
|
835
|
+
zeros.newton(f, 1.0, f_p)
|
836
|
+
root = zeros.newton(f, complex(10.0, 10.0), f_p)
|
837
|
+
assert_allclose(root, complex(0.0, 1.0))
|
838
|
+
|
839
|
+
|
840
|
+
@pytest.mark.parametrize('solver_name',
|
841
|
+
['brentq', 'brenth', 'bisect', 'ridder', 'toms748'])
|
842
|
+
def test_gh3089_8394(solver_name):
|
843
|
+
# gh-3089 and gh-8394 reported that bracketing solvers returned incorrect
|
844
|
+
# results when they encountered NaNs. Check that this is resolved.
|
845
|
+
def f(x):
|
846
|
+
return np.nan
|
847
|
+
|
848
|
+
solver = getattr(zeros, solver_name)
|
849
|
+
with pytest.raises(ValueError, match="The function value at x..."):
|
850
|
+
solver(f, 0, 1)
|
851
|
+
|
852
|
+
|
853
|
+
@pytest.mark.parametrize('method',
|
854
|
+
['brentq', 'brenth', 'bisect', 'ridder', 'toms748'])
|
855
|
+
def test_gh18171(method):
|
856
|
+
# gh-3089 and gh-8394 reported that bracketing solvers returned incorrect
|
857
|
+
# results when they encountered NaNs. Check that `root_scalar` returns
|
858
|
+
# normally but indicates that convergence was unsuccessful. See gh-18171.
|
859
|
+
def f(x):
|
860
|
+
f._count += 1
|
861
|
+
return np.nan
|
862
|
+
f._count = 0
|
863
|
+
|
864
|
+
res = root_scalar(f, bracket=(0, 1), method=method)
|
865
|
+
assert res.converged is False
|
866
|
+
assert res.flag.startswith("The function value at x")
|
867
|
+
assert res.function_calls == f._count
|
868
|
+
assert str(res.root) in res.flag
|
869
|
+
|
870
|
+
|
871
|
+
@pytest.mark.parametrize('solver_name',
|
872
|
+
['brentq', 'brenth', 'bisect', 'ridder', 'toms748'])
|
873
|
+
@pytest.mark.parametrize('rs_interface', [True, False])
|
874
|
+
def test_function_calls(solver_name, rs_interface):
|
875
|
+
# There do not appear to be checks that the bracketing solvers report the
|
876
|
+
# correct number of function evaluations. Check that this is the case.
|
877
|
+
solver = ((lambda f, a, b, **kwargs: root_scalar(f, bracket=(a, b)))
|
878
|
+
if rs_interface else getattr(zeros, solver_name))
|
879
|
+
|
880
|
+
def f(x):
|
881
|
+
f.calls += 1
|
882
|
+
return x**2 - 1
|
883
|
+
f.calls = 0
|
884
|
+
|
885
|
+
res = solver(f, 0, 10, full_output=True)
|
886
|
+
|
887
|
+
if rs_interface:
|
888
|
+
assert res.function_calls == f.calls
|
889
|
+
else:
|
890
|
+
assert res[1].function_calls == f.calls
|
891
|
+
|
892
|
+
|
893
|
+
@pytest.mark.thread_unsafe
|
894
|
+
def test_gh_14486_converged_false():
|
895
|
+
"""Test that zero slope with secant method results in a converged=False"""
|
896
|
+
def lhs(x):
|
897
|
+
return x * np.exp(-x*x) - 0.07
|
898
|
+
|
899
|
+
with pytest.warns(RuntimeWarning, match='Tolerance of'):
|
900
|
+
res = root_scalar(lhs, method='secant', x0=-0.15, x1=1.0)
|
901
|
+
assert not res.converged
|
902
|
+
assert res.flag == 'convergence error'
|
903
|
+
|
904
|
+
with pytest.warns(RuntimeWarning, match='Tolerance of'):
|
905
|
+
res = newton(lhs, x0=-0.15, x1=1.0, disp=False, full_output=True)[1]
|
906
|
+
assert not res.converged
|
907
|
+
assert res.flag == 'convergence error'
|
908
|
+
|
909
|
+
|
910
|
+
@pytest.mark.parametrize('solver_name',
|
911
|
+
['brentq', 'brenth', 'bisect', 'ridder', 'toms748'])
|
912
|
+
@pytest.mark.parametrize('rs_interface', [True, False])
|
913
|
+
def test_gh5584(solver_name, rs_interface):
|
914
|
+
# gh-5584 reported that an underflow can cause sign checks in the algorithm
|
915
|
+
# to fail. Check that this is resolved.
|
916
|
+
solver = ((lambda f, a, b, **kwargs: root_scalar(f, bracket=(a, b)))
|
917
|
+
if rs_interface else getattr(zeros, solver_name))
|
918
|
+
|
919
|
+
def f(x):
|
920
|
+
return 1e-200*x
|
921
|
+
|
922
|
+
# Report failure when signs are the same
|
923
|
+
with pytest.raises(ValueError, match='...must have different signs'):
|
924
|
+
solver(f, -0.5, -0.4, full_output=True)
|
925
|
+
|
926
|
+
# Solve successfully when signs are different
|
927
|
+
res = solver(f, -0.5, 0.4, full_output=True)
|
928
|
+
res = res if rs_interface else res[1]
|
929
|
+
assert res.converged
|
930
|
+
assert_allclose(res.root, 0, atol=1e-8)
|
931
|
+
|
932
|
+
# Solve successfully when one side is negative zero
|
933
|
+
res = solver(f, -0.5, float('-0.0'), full_output=True)
|
934
|
+
res = res if rs_interface else res[1]
|
935
|
+
assert res.converged
|
936
|
+
assert_allclose(res.root, 0, atol=1e-8)
|
937
|
+
|
938
|
+
|
939
|
+
def test_gh13407():
|
940
|
+
# gh-13407 reported that the message produced by `scipy.optimize.toms748`
|
941
|
+
# when `rtol < eps` is incorrect, and also that toms748 is unusual in
|
942
|
+
# accepting `rtol` as low as eps while other solvers raise at 4*eps. Check
|
943
|
+
# that the error message has been corrected and that `rtol=eps` can produce
|
944
|
+
# a lower function value than `rtol=4*eps`.
|
945
|
+
def f(x):
|
946
|
+
return x**3 - 2*x - 5
|
947
|
+
|
948
|
+
xtol = 1e-300
|
949
|
+
eps = np.finfo(float).eps
|
950
|
+
x1 = zeros.toms748(f, 1e-10, 1e10, xtol=xtol, rtol=1*eps)
|
951
|
+
f1 = f(x1)
|
952
|
+
x4 = zeros.toms748(f, 1e-10, 1e10, xtol=xtol, rtol=4*eps)
|
953
|
+
f4 = f(x4)
|
954
|
+
assert f1 < f4
|
955
|
+
|
956
|
+
# using old-style syntax to get exactly the same message
|
957
|
+
message = fr"rtol too small \({eps/2:g} < {eps:g}\)"
|
958
|
+
with pytest.raises(ValueError, match=message):
|
959
|
+
zeros.toms748(f, 1e-10, 1e10, xtol=xtol, rtol=eps/2)
|
960
|
+
|
961
|
+
|
962
|
+
def test_newton_complex_gh10103():
|
963
|
+
# gh-10103 reported a problem when `newton` is pass a Python complex x0,
|
964
|
+
# no `fprime` (secant method), and no `x1` (`x1` must be constructed).
|
965
|
+
# Check that this is resolved.
|
966
|
+
def f(z):
|
967
|
+
return z - 1
|
968
|
+
res = newton(f, 1+1j)
|
969
|
+
assert_allclose(res, 1, atol=1e-12)
|
970
|
+
|
971
|
+
res = root_scalar(f, x0=1+1j, x1=2+1.5j, method='secant')
|
972
|
+
assert_allclose(res.root, 1, atol=1e-12)
|
973
|
+
|
974
|
+
|
975
|
+
@pytest.mark.parametrize('method', all_methods)
|
976
|
+
def test_maxiter_int_check_gh10236(method):
|
977
|
+
# gh-10236 reported that the error message when `maxiter` is not an integer
|
978
|
+
# was difficult to interpret. Check that this was resolved (by gh-10907).
|
979
|
+
message = "'float' object cannot be interpreted as an integer"
|
980
|
+
with pytest.raises(TypeError, match=message):
|
981
|
+
method(f1, 0.0, 1.0, maxiter=72.45)
|
982
|
+
|
983
|
+
@pytest.mark.parametrize("method", [zeros.bisect, zeros.ridder,
|
984
|
+
zeros.brentq, zeros.brenth])
|
985
|
+
def test_bisect_special_parameter(method):
|
986
|
+
# give some zeros method strange parameters
|
987
|
+
# and check whether an exception appears
|
988
|
+
root = 0.1
|
989
|
+
args = (1e-09, 0.004, 10, 0.27456)
|
990
|
+
rtolbad = 4 * np.finfo(float).eps / 2
|
991
|
+
|
992
|
+
def f(x):
|
993
|
+
return x - root
|
994
|
+
|
995
|
+
with pytest.raises(ValueError, match="xtol too small"):
|
996
|
+
method(f, -1e8, 1e7, args=args, xtol=-1e-6, rtol=TOL)
|
997
|
+
with pytest.raises(ValueError, match="rtol too small"):
|
998
|
+
method(f, -1e8, 1e7, args=args, xtol=1e-6, rtol=rtolbad)
|