scipy 1.16.2__cp312-cp312-win_arm64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scipy/__config__.py +161 -0
- scipy/__init__.py +150 -0
- scipy/_cyutility.cp312-win_arm64.lib +0 -0
- scipy/_cyutility.cp312-win_arm64.pyd +0 -0
- scipy/_distributor_init.py +18 -0
- scipy/_lib/__init__.py +14 -0
- scipy/_lib/_array_api.py +931 -0
- scipy/_lib/_array_api_compat_vendor.py +9 -0
- scipy/_lib/_array_api_no_0d.py +103 -0
- scipy/_lib/_bunch.py +229 -0
- scipy/_lib/_ccallback.py +251 -0
- scipy/_lib/_ccallback_c.cp312-win_arm64.lib +0 -0
- scipy/_lib/_ccallback_c.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_disjoint_set.py +254 -0
- scipy/_lib/_docscrape.py +761 -0
- scipy/_lib/_elementwise_iterative_method.py +346 -0
- scipy/_lib/_fpumode.cp312-win_arm64.lib +0 -0
- scipy/_lib/_fpumode.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_gcutils.py +105 -0
- scipy/_lib/_pep440.py +487 -0
- scipy/_lib/_sparse.py +41 -0
- scipy/_lib/_test_ccallback.cp312-win_arm64.lib +0 -0
- scipy/_lib/_test_ccallback.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_call.cp312-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_call.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_def.cp312-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_def.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_testutils.py +373 -0
- scipy/_lib/_threadsafety.py +58 -0
- scipy/_lib/_tmpdirs.py +86 -0
- scipy/_lib/_uarray/LICENSE +29 -0
- scipy/_lib/_uarray/__init__.py +116 -0
- scipy/_lib/_uarray/_backend.py +707 -0
- scipy/_lib/_uarray/_uarray.cp312-win_arm64.lib +0 -0
- scipy/_lib/_uarray/_uarray.cp312-win_arm64.pyd +0 -0
- scipy/_lib/_util.py +1283 -0
- scipy/_lib/array_api_compat/__init__.py +22 -0
- scipy/_lib/array_api_compat/_internal.py +59 -0
- scipy/_lib/array_api_compat/common/__init__.py +1 -0
- scipy/_lib/array_api_compat/common/_aliases.py +727 -0
- scipy/_lib/array_api_compat/common/_fft.py +213 -0
- scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
- scipy/_lib/array_api_compat/common/_linalg.py +232 -0
- scipy/_lib/array_api_compat/common/_typing.py +192 -0
- scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
- scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
- scipy/_lib/array_api_compat/cupy/_info.py +336 -0
- scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
- scipy/_lib/array_api_compat/cupy/fft.py +36 -0
- scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
- scipy/_lib/array_api_compat/dask/__init__.py +0 -0
- scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
- scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
- scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
- scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
- scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
- scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
- scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
- scipy/_lib/array_api_compat/numpy/_info.py +366 -0
- scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
- scipy/_lib/array_api_compat/numpy/fft.py +35 -0
- scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
- scipy/_lib/array_api_compat/torch/__init__.py +22 -0
- scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
- scipy/_lib/array_api_compat/torch/_info.py +369 -0
- scipy/_lib/array_api_compat/torch/_typing.py +3 -0
- scipy/_lib/array_api_compat/torch/fft.py +85 -0
- scipy/_lib/array_api_compat/torch/linalg.py +121 -0
- scipy/_lib/array_api_extra/__init__.py +38 -0
- scipy/_lib/array_api_extra/_delegation.py +171 -0
- scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_at.py +463 -0
- scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
- scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
- scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
- scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
- scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
- scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
- scipy/_lib/array_api_extra/testing.py +359 -0
- scipy/_lib/cobyqa/__init__.py +20 -0
- scipy/_lib/cobyqa/framework.py +1240 -0
- scipy/_lib/cobyqa/main.py +1506 -0
- scipy/_lib/cobyqa/models.py +1529 -0
- scipy/_lib/cobyqa/problem.py +1296 -0
- scipy/_lib/cobyqa/settings.py +132 -0
- scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
- scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
- scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
- scipy/_lib/cobyqa/utils/__init__.py +18 -0
- scipy/_lib/cobyqa/utils/exceptions.py +22 -0
- scipy/_lib/cobyqa/utils/math.py +77 -0
- scipy/_lib/cobyqa/utils/versions.py +67 -0
- scipy/_lib/decorator.py +399 -0
- scipy/_lib/deprecation.py +274 -0
- scipy/_lib/doccer.py +366 -0
- scipy/_lib/messagestream.cp312-win_arm64.lib +0 -0
- scipy/_lib/messagestream.cp312-win_arm64.pyd +0 -0
- scipy/_lib/pyprima/__init__.py +212 -0
- scipy/_lib/pyprima/cobyla/__init__.py +0 -0
- scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
- scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
- scipy/_lib/pyprima/cobyla/geometry.py +226 -0
- scipy/_lib/pyprima/cobyla/initialize.py +215 -0
- scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
- scipy/_lib/pyprima/cobyla/update.py +289 -0
- scipy/_lib/pyprima/common/__init__.py +0 -0
- scipy/_lib/pyprima/common/_bounds.py +34 -0
- scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
- scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
- scipy/_lib/pyprima/common/_project.py +173 -0
- scipy/_lib/pyprima/common/checkbreak.py +93 -0
- scipy/_lib/pyprima/common/consts.py +47 -0
- scipy/_lib/pyprima/common/evaluate.py +99 -0
- scipy/_lib/pyprima/common/history.py +38 -0
- scipy/_lib/pyprima/common/infos.py +30 -0
- scipy/_lib/pyprima/common/linalg.py +435 -0
- scipy/_lib/pyprima/common/message.py +290 -0
- scipy/_lib/pyprima/common/powalg.py +131 -0
- scipy/_lib/pyprima/common/preproc.py +277 -0
- scipy/_lib/pyprima/common/present.py +5 -0
- scipy/_lib/pyprima/common/ratio.py +54 -0
- scipy/_lib/pyprima/common/redrho.py +47 -0
- scipy/_lib/pyprima/common/selectx.py +296 -0
- scipy/_lib/tests/__init__.py +0 -0
- scipy/_lib/tests/test__gcutils.py +110 -0
- scipy/_lib/tests/test__pep440.py +67 -0
- scipy/_lib/tests/test__testutils.py +32 -0
- scipy/_lib/tests/test__threadsafety.py +51 -0
- scipy/_lib/tests/test__util.py +641 -0
- scipy/_lib/tests/test_array_api.py +322 -0
- scipy/_lib/tests/test_bunch.py +169 -0
- scipy/_lib/tests/test_ccallback.py +196 -0
- scipy/_lib/tests/test_config.py +45 -0
- scipy/_lib/tests/test_deprecation.py +10 -0
- scipy/_lib/tests/test_doccer.py +143 -0
- scipy/_lib/tests/test_import_cycles.py +18 -0
- scipy/_lib/tests/test_public_api.py +482 -0
- scipy/_lib/tests/test_scipy_version.py +28 -0
- scipy/_lib/tests/test_tmpdirs.py +48 -0
- scipy/_lib/tests/test_warnings.py +137 -0
- scipy/_lib/uarray.py +31 -0
- scipy/cluster/__init__.py +31 -0
- scipy/cluster/_hierarchy.cp312-win_arm64.lib +0 -0
- scipy/cluster/_hierarchy.cp312-win_arm64.pyd +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp312-win_arm64.lib +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp312-win_arm64.pyd +0 -0
- scipy/cluster/_vq.cp312-win_arm64.lib +0 -0
- scipy/cluster/_vq.cp312-win_arm64.pyd +0 -0
- scipy/cluster/hierarchy.py +4348 -0
- scipy/cluster/tests/__init__.py +0 -0
- scipy/cluster/tests/hierarchy_test_data.py +145 -0
- scipy/cluster/tests/test_disjoint_set.py +202 -0
- scipy/cluster/tests/test_hierarchy.py +1238 -0
- scipy/cluster/tests/test_vq.py +434 -0
- scipy/cluster/vq.py +832 -0
- scipy/conftest.py +683 -0
- scipy/constants/__init__.py +358 -0
- scipy/constants/_codata.py +2266 -0
- scipy/constants/_constants.py +369 -0
- scipy/constants/codata.py +21 -0
- scipy/constants/constants.py +53 -0
- scipy/constants/tests/__init__.py +0 -0
- scipy/constants/tests/test_codata.py +78 -0
- scipy/constants/tests/test_constants.py +83 -0
- scipy/datasets/__init__.py +90 -0
- scipy/datasets/_download_all.py +71 -0
- scipy/datasets/_fetchers.py +225 -0
- scipy/datasets/_registry.py +26 -0
- scipy/datasets/_utils.py +81 -0
- scipy/datasets/tests/__init__.py +0 -0
- scipy/datasets/tests/test_data.py +128 -0
- scipy/differentiate/__init__.py +27 -0
- scipy/differentiate/_differentiate.py +1129 -0
- scipy/differentiate/tests/__init__.py +0 -0
- scipy/differentiate/tests/test_differentiate.py +694 -0
- scipy/fft/__init__.py +114 -0
- scipy/fft/_backend.py +196 -0
- scipy/fft/_basic.py +1650 -0
- scipy/fft/_basic_backend.py +197 -0
- scipy/fft/_debug_backends.py +22 -0
- scipy/fft/_fftlog.py +223 -0
- scipy/fft/_fftlog_backend.py +200 -0
- scipy/fft/_helper.py +348 -0
- scipy/fft/_pocketfft/LICENSE.md +25 -0
- scipy/fft/_pocketfft/__init__.py +9 -0
- scipy/fft/_pocketfft/basic.py +251 -0
- scipy/fft/_pocketfft/helper.py +249 -0
- scipy/fft/_pocketfft/pypocketfft.cp312-win_arm64.lib +0 -0
- scipy/fft/_pocketfft/pypocketfft.cp312-win_arm64.pyd +0 -0
- scipy/fft/_pocketfft/realtransforms.py +109 -0
- scipy/fft/_pocketfft/tests/__init__.py +0 -0
- scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
- scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
- scipy/fft/_realtransforms.py +706 -0
- scipy/fft/_realtransforms_backend.py +63 -0
- scipy/fft/tests/__init__.py +0 -0
- scipy/fft/tests/mock_backend.py +96 -0
- scipy/fft/tests/test_backend.py +98 -0
- scipy/fft/tests/test_basic.py +504 -0
- scipy/fft/tests/test_fftlog.py +215 -0
- scipy/fft/tests/test_helper.py +558 -0
- scipy/fft/tests/test_multithreading.py +84 -0
- scipy/fft/tests/test_real_transforms.py +247 -0
- scipy/fftpack/__init__.py +103 -0
- scipy/fftpack/_basic.py +428 -0
- scipy/fftpack/_helper.py +115 -0
- scipy/fftpack/_pseudo_diffs.py +554 -0
- scipy/fftpack/_realtransforms.py +598 -0
- scipy/fftpack/basic.py +20 -0
- scipy/fftpack/convolve.cp312-win_arm64.lib +0 -0
- scipy/fftpack/convolve.cp312-win_arm64.pyd +0 -0
- scipy/fftpack/helper.py +19 -0
- scipy/fftpack/pseudo_diffs.py +22 -0
- scipy/fftpack/realtransforms.py +19 -0
- scipy/fftpack/tests/__init__.py +0 -0
- scipy/fftpack/tests/fftw_double_ref.npz +0 -0
- scipy/fftpack/tests/fftw_longdouble_ref.npz +0 -0
- scipy/fftpack/tests/fftw_single_ref.npz +0 -0
- scipy/fftpack/tests/test.npz +0 -0
- scipy/fftpack/tests/test_basic.py +877 -0
- scipy/fftpack/tests/test_helper.py +54 -0
- scipy/fftpack/tests/test_import.py +33 -0
- scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
- scipy/fftpack/tests/test_real_transforms.py +836 -0
- scipy/integrate/__init__.py +122 -0
- scipy/integrate/_bvp.py +1160 -0
- scipy/integrate/_cubature.py +729 -0
- scipy/integrate/_dop.cp312-win_arm64.lib +0 -0
- scipy/integrate/_dop.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_ivp/__init__.py +8 -0
- scipy/integrate/_ivp/base.py +290 -0
- scipy/integrate/_ivp/bdf.py +478 -0
- scipy/integrate/_ivp/common.py +451 -0
- scipy/integrate/_ivp/dop853_coefficients.py +193 -0
- scipy/integrate/_ivp/ivp.py +755 -0
- scipy/integrate/_ivp/lsoda.py +224 -0
- scipy/integrate/_ivp/radau.py +572 -0
- scipy/integrate/_ivp/rk.py +601 -0
- scipy/integrate/_ivp/tests/__init__.py +0 -0
- scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
- scipy/integrate/_ivp/tests/test_rk.py +37 -0
- scipy/integrate/_lebedev.py +5450 -0
- scipy/integrate/_lsoda.cp312-win_arm64.lib +0 -0
- scipy/integrate/_lsoda.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_ode.py +1395 -0
- scipy/integrate/_odepack.cp312-win_arm64.lib +0 -0
- scipy/integrate/_odepack.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_odepack_py.py +273 -0
- scipy/integrate/_quad_vec.py +674 -0
- scipy/integrate/_quadpack.cp312-win_arm64.lib +0 -0
- scipy/integrate/_quadpack.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_quadpack_py.py +1283 -0
- scipy/integrate/_quadrature.py +1336 -0
- scipy/integrate/_rules/__init__.py +12 -0
- scipy/integrate/_rules/_base.py +518 -0
- scipy/integrate/_rules/_gauss_kronrod.py +202 -0
- scipy/integrate/_rules/_gauss_legendre.py +62 -0
- scipy/integrate/_rules/_genz_malik.py +210 -0
- scipy/integrate/_tanhsinh.py +1385 -0
- scipy/integrate/_test_multivariate.cp312-win_arm64.lib +0 -0
- scipy/integrate/_test_multivariate.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_test_odeint_banded.cp312-win_arm64.lib +0 -0
- scipy/integrate/_test_odeint_banded.cp312-win_arm64.pyd +0 -0
- scipy/integrate/_vode.cp312-win_arm64.lib +0 -0
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- scipy/integrate/lsoda.py +15 -0
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- scipy/integrate/quadpack.py +23 -0
- scipy/integrate/tests/__init__.py +0 -0
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- scipy/integrate/tests/test_banded_ode_solvers.py +305 -0
- scipy/integrate/tests/test_bvp.py +714 -0
- scipy/integrate/tests/test_cubature.py +1375 -0
- scipy/integrate/tests/test_integrate.py +840 -0
- scipy/integrate/tests/test_odeint_jac.py +74 -0
- scipy/integrate/tests/test_quadpack.py +680 -0
- scipy/integrate/tests/test_quadrature.py +730 -0
- scipy/integrate/tests/test_tanhsinh.py +1171 -0
- scipy/integrate/vode.py +15 -0
- scipy/interpolate/__init__.py +228 -0
- scipy/interpolate/_bary_rational.py +715 -0
- scipy/interpolate/_bsplines.py +2469 -0
- scipy/interpolate/_cubic.py +973 -0
- scipy/interpolate/_dfitpack.cp312-win_arm64.lib +0 -0
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- scipy/io/_fast_matrix_market/__init__.py +600 -0
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from numpy.testing import (
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csr_array, eye_array, issparse, dok_array, lil_array, bsr_array, kron)
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def test_call_with_incorrectly_sized_matrix_with_umfpack(self):
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# does not raise
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solve(b)
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solve(B)
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with assert_raises(ValueError, match=msg):
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solve(BB)
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def test_call_with_cast_to_complex_without_umfpack(self):
|
148
|
+
use_solver(useUmfpack=False)
|
149
|
+
solve = factorized(self.A)
|
150
|
+
rng = np.random.default_rng(23454)
|
151
|
+
b = rng.random(4)
|
152
|
+
for t in [np.complex64, np.complex128]:
|
153
|
+
with assert_raises(TypeError, match="Cannot cast array data"):
|
154
|
+
solve(b.astype(t))
|
155
|
+
|
156
|
+
@pytest.mark.skipif(not has_umfpack, reason="umfpack not available")
|
157
|
+
def test_call_with_cast_to_complex_with_umfpack(self):
|
158
|
+
use_solver(useUmfpack=True)
|
159
|
+
solve = factorized(self.A)
|
160
|
+
rng = np.random.default_rng(23454)
|
161
|
+
b = rng.random(4)
|
162
|
+
for t in [np.complex64, np.complex128]:
|
163
|
+
assert_warns(ComplexWarning, solve, b.astype(t))
|
164
|
+
|
165
|
+
@pytest.mark.skipif(not has_umfpack, reason="umfpack not available")
|
166
|
+
def test_assume_sorted_indices_flag(self):
|
167
|
+
# a sparse matrix with unsorted indices
|
168
|
+
unsorted_inds = np.array([2, 0, 1, 0])
|
169
|
+
data = np.array([10, 16, 5, 0.4])
|
170
|
+
indptr = np.array([0, 1, 2, 4])
|
171
|
+
A = csc_array((data, unsorted_inds, indptr), (3, 3))
|
172
|
+
b = ones(3)
|
173
|
+
|
174
|
+
# should raise when incorrectly assuming indices are sorted
|
175
|
+
use_solver(useUmfpack=True, assumeSortedIndices=True)
|
176
|
+
with assert_raises(RuntimeError,
|
177
|
+
match="UMFPACK_ERROR_invalid_matrix"):
|
178
|
+
factorized(A)
|
179
|
+
|
180
|
+
# should sort indices and succeed when not assuming indices are sorted
|
181
|
+
use_solver(useUmfpack=True, assumeSortedIndices=False)
|
182
|
+
expected = splu(A.copy()).solve(b)
|
183
|
+
|
184
|
+
assert_equal(A.has_sorted_indices, 0)
|
185
|
+
assert_array_almost_equal(factorized(A)(b), expected)
|
186
|
+
|
187
|
+
@pytest.mark.slow
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188
|
+
@pytest.mark.skipif(not has_umfpack, reason="umfpack not available")
|
189
|
+
def test_bug_8278(self):
|
190
|
+
check_free_memory(8000)
|
191
|
+
use_solver(useUmfpack=True)
|
192
|
+
A, b = setup_bug_8278()
|
193
|
+
A = A.tocsc()
|
194
|
+
f = factorized(A)
|
195
|
+
x = f(b)
|
196
|
+
assert_array_almost_equal(A @ x, b)
|
197
|
+
|
198
|
+
|
199
|
+
class TestLinsolve:
|
200
|
+
def setup_method(self):
|
201
|
+
use_solver(useUmfpack=False)
|
202
|
+
|
203
|
+
def test_singular(self):
|
204
|
+
A = csc_array((5,5), dtype='d')
|
205
|
+
b = array([1, 2, 3, 4, 5],dtype='d')
|
206
|
+
with suppress_warnings() as sup:
|
207
|
+
sup.filter(MatrixRankWarning, "Matrix is exactly singular")
|
208
|
+
x = spsolve(A, b)
|
209
|
+
assert_(not np.isfinite(x).any())
|
210
|
+
|
211
|
+
def test_singular_gh_3312(self):
|
212
|
+
# "Bad" test case that leads SuperLU to call LAPACK with invalid
|
213
|
+
# arguments. Check that it fails moderately gracefully.
|
214
|
+
ij = np.array([(17, 0), (17, 6), (17, 12), (10, 13)], dtype=np.int32)
|
215
|
+
v = np.array([0.284213, 0.94933781, 0.15767017, 0.38797296])
|
216
|
+
A = csc_array((v, ij.T), shape=(20, 20))
|
217
|
+
b = np.arange(20)
|
218
|
+
|
219
|
+
try:
|
220
|
+
# should either raise a runtime error or return value
|
221
|
+
# appropriate for singular input (which yields the warning)
|
222
|
+
with suppress_warnings() as sup:
|
223
|
+
sup.filter(MatrixRankWarning, "Matrix is exactly singular")
|
224
|
+
x = spsolve(A, b)
|
225
|
+
assert not np.isfinite(x).any()
|
226
|
+
except RuntimeError:
|
227
|
+
pass
|
228
|
+
|
229
|
+
@pytest.mark.parametrize('format', ['csc', 'csr'])
|
230
|
+
@pytest.mark.parametrize('idx_dtype', [np.int32, np.int64])
|
231
|
+
def test_twodiags(self, format: str, idx_dtype: np.dtype):
|
232
|
+
A = dia_array(([[1, 2, 3, 4, 5], [6, 5, 8, 9, 10]], [0, 1]),
|
233
|
+
shape=(5, 5)).asformat(format)
|
234
|
+
b = array([1, 2, 3, 4, 5])
|
235
|
+
|
236
|
+
# condition number of A
|
237
|
+
cond_A = norm(A.toarray(), 2) * norm(inv(A.toarray()), 2)
|
238
|
+
|
239
|
+
for t in ['f','d','F','D']:
|
240
|
+
eps = finfo(t).eps # floating point epsilon
|
241
|
+
b = b.astype(t)
|
242
|
+
Asp = A.astype(t)
|
243
|
+
Asp.indices = Asp.indices.astype(idx_dtype, copy=False)
|
244
|
+
Asp.indptr = Asp.indptr.astype(idx_dtype, copy=False)
|
245
|
+
|
246
|
+
x = spsolve(Asp, b)
|
247
|
+
assert_(norm(b - Asp@x) < 10 * cond_A * eps)
|
248
|
+
|
249
|
+
def test_bvector_smoketest(self):
|
250
|
+
Adense = array([[0., 1., 1.],
|
251
|
+
[1., 0., 1.],
|
252
|
+
[0., 0., 1.]])
|
253
|
+
As = csc_array(Adense)
|
254
|
+
rng = np.random.default_rng(1234)
|
255
|
+
x = rng.standard_normal(3)
|
256
|
+
b = As@x
|
257
|
+
x2 = spsolve(As, b)
|
258
|
+
|
259
|
+
assert_array_almost_equal(x, x2)
|
260
|
+
|
261
|
+
def test_bmatrix_smoketest(self):
|
262
|
+
Adense = array([[0., 1., 1.],
|
263
|
+
[1., 0., 1.],
|
264
|
+
[0., 0., 1.]])
|
265
|
+
As = csc_array(Adense)
|
266
|
+
rng = np.random.default_rng(1234)
|
267
|
+
x = rng.standard_normal((3, 4))
|
268
|
+
Bdense = As.dot(x)
|
269
|
+
Bs = csc_array(Bdense)
|
270
|
+
x2 = spsolve(As, Bs)
|
271
|
+
assert_array_almost_equal(x, x2.toarray())
|
272
|
+
|
273
|
+
@pytest.mark.thread_unsafe
|
274
|
+
@sup_sparse_efficiency
|
275
|
+
def test_non_square(self):
|
276
|
+
# A is not square.
|
277
|
+
A = ones((3, 4))
|
278
|
+
b = ones((4, 1))
|
279
|
+
assert_raises(ValueError, spsolve, A, b)
|
280
|
+
# A2 and b2 have incompatible shapes.
|
281
|
+
A2 = csc_array(eye(3))
|
282
|
+
b2 = array([1.0, 2.0])
|
283
|
+
assert_raises(ValueError, spsolve, A2, b2)
|
284
|
+
|
285
|
+
@pytest.mark.thread_unsafe
|
286
|
+
@sup_sparse_efficiency
|
287
|
+
def test_example_comparison(self):
|
288
|
+
row = array([0,0,1,2,2,2])
|
289
|
+
col = array([0,2,2,0,1,2])
|
290
|
+
data = array([1,2,3,-4,5,6])
|
291
|
+
sM = csr_array((data,(row,col)), shape=(3,3), dtype=float)
|
292
|
+
M = sM.toarray()
|
293
|
+
|
294
|
+
row = array([0,0,1,1,0,0])
|
295
|
+
col = array([0,2,1,1,0,0])
|
296
|
+
data = array([1,1,1,1,1,1])
|
297
|
+
sN = csr_array((data, (row,col)), shape=(3,3), dtype=float)
|
298
|
+
N = sN.toarray()
|
299
|
+
|
300
|
+
sX = spsolve(sM, sN)
|
301
|
+
X = scipy.linalg.solve(M, N)
|
302
|
+
|
303
|
+
assert_array_almost_equal(X, sX.toarray())
|
304
|
+
|
305
|
+
@pytest.mark.thread_unsafe
|
306
|
+
@sup_sparse_efficiency
|
307
|
+
@pytest.mark.skipif(not has_umfpack, reason="umfpack not available")
|
308
|
+
def test_shape_compatibility(self):
|
309
|
+
use_solver(useUmfpack=True)
|
310
|
+
A = csc_array([[1., 0], [0, 2]])
|
311
|
+
bs = [
|
312
|
+
[1, 6],
|
313
|
+
array([1, 6]),
|
314
|
+
[[1], [6]],
|
315
|
+
array([[1], [6]]),
|
316
|
+
csc_array([[1], [6]]),
|
317
|
+
csr_array([[1], [6]]),
|
318
|
+
dok_array([[1], [6]]),
|
319
|
+
bsr_array([[1], [6]]),
|
320
|
+
array([[1., 2., 3.], [6., 8., 10.]]),
|
321
|
+
csc_array([[1., 2., 3.], [6., 8., 10.]]),
|
322
|
+
csr_array([[1., 2., 3.], [6., 8., 10.]]),
|
323
|
+
dok_array([[1., 2., 3.], [6., 8., 10.]]),
|
324
|
+
bsr_array([[1., 2., 3.], [6., 8., 10.]]),
|
325
|
+
]
|
326
|
+
|
327
|
+
for b in bs:
|
328
|
+
x = np.linalg.solve(A.toarray(), toarray(b))
|
329
|
+
for spmattype in [csc_array, csr_array, dok_array, lil_array]:
|
330
|
+
x1 = spsolve(spmattype(A), b, use_umfpack=True)
|
331
|
+
x2 = spsolve(spmattype(A), b, use_umfpack=False)
|
332
|
+
|
333
|
+
# check solution
|
334
|
+
if x.ndim == 2 and x.shape[1] == 1:
|
335
|
+
# interprets also these as "vectors"
|
336
|
+
x = x.ravel()
|
337
|
+
|
338
|
+
assert_array_almost_equal(toarray(x1), x,
|
339
|
+
err_msg=repr((b, spmattype, 1)))
|
340
|
+
assert_array_almost_equal(toarray(x2), x,
|
341
|
+
err_msg=repr((b, spmattype, 2)))
|
342
|
+
|
343
|
+
# dense vs. sparse output ("vectors" are always dense)
|
344
|
+
if issparse(b) and x.ndim > 1:
|
345
|
+
assert_(issparse(x1), repr((b, spmattype, 1)))
|
346
|
+
assert_(issparse(x2), repr((b, spmattype, 2)))
|
347
|
+
else:
|
348
|
+
assert_(isinstance(x1, np.ndarray), repr((b, spmattype, 1)))
|
349
|
+
assert_(isinstance(x2, np.ndarray), repr((b, spmattype, 2)))
|
350
|
+
|
351
|
+
# check output shape
|
352
|
+
if x.ndim == 1:
|
353
|
+
# "vector"
|
354
|
+
assert_equal(x1.shape, (A.shape[1],))
|
355
|
+
assert_equal(x2.shape, (A.shape[1],))
|
356
|
+
else:
|
357
|
+
# "matrix"
|
358
|
+
assert_equal(x1.shape, x.shape)
|
359
|
+
assert_equal(x2.shape, x.shape)
|
360
|
+
|
361
|
+
A = csc_array((3, 3))
|
362
|
+
b = csc_array((1, 3))
|
363
|
+
assert_raises(ValueError, spsolve, A, b)
|
364
|
+
|
365
|
+
@pytest.mark.thread_unsafe
|
366
|
+
@sup_sparse_efficiency
|
367
|
+
def test_ndarray_support(self):
|
368
|
+
A = array([[1., 2.], [2., 0.]])
|
369
|
+
x = array([[1., 1.], [0.5, -0.5]])
|
370
|
+
b = array([[2., 0.], [2., 2.]])
|
371
|
+
|
372
|
+
assert_array_almost_equal(x, spsolve(A, b))
|
373
|
+
|
374
|
+
def test_gssv_badinput(self):
|
375
|
+
N = 10
|
376
|
+
d = arange(N) + 1.0
|
377
|
+
A = dia_array(((d, 2*d, d[::-1]), (-3, 0, 5)), shape=(N, N))
|
378
|
+
|
379
|
+
for container in (csc_array, csr_array):
|
380
|
+
A = container(A)
|
381
|
+
b = np.arange(N)
|
382
|
+
|
383
|
+
def not_c_contig(x):
|
384
|
+
return x.repeat(2)[::2]
|
385
|
+
|
386
|
+
def not_1dim(x):
|
387
|
+
return x[:,None]
|
388
|
+
|
389
|
+
def bad_type(x):
|
390
|
+
return x.astype(bool)
|
391
|
+
|
392
|
+
def too_short(x):
|
393
|
+
return x[:-1]
|
394
|
+
|
395
|
+
badops = [not_c_contig, not_1dim, bad_type, too_short]
|
396
|
+
|
397
|
+
for badop in badops:
|
398
|
+
msg = f"{container!r} {badop!r}"
|
399
|
+
# Not C-contiguous
|
400
|
+
assert_raises((ValueError, TypeError), _superlu.gssv,
|
401
|
+
N, A.nnz, badop(A.data), A.indices, A.indptr,
|
402
|
+
b, int(A.format == 'csc'), err_msg=msg)
|
403
|
+
assert_raises((ValueError, TypeError), _superlu.gssv,
|
404
|
+
N, A.nnz, A.data, badop(A.indices), A.indptr,
|
405
|
+
b, int(A.format == 'csc'), err_msg=msg)
|
406
|
+
assert_raises((ValueError, TypeError), _superlu.gssv,
|
407
|
+
N, A.nnz, A.data, A.indices, badop(A.indptr),
|
408
|
+
b, int(A.format == 'csc'), err_msg=msg)
|
409
|
+
|
410
|
+
def test_sparsity_preservation(self):
|
411
|
+
ident = csc_array([
|
412
|
+
[1, 0, 0],
|
413
|
+
[0, 1, 0],
|
414
|
+
[0, 0, 1]])
|
415
|
+
b = csc_array([
|
416
|
+
[0, 1],
|
417
|
+
[1, 0],
|
418
|
+
[0, 0]])
|
419
|
+
x = spsolve(ident, b)
|
420
|
+
assert_equal(ident.nnz, 3)
|
421
|
+
assert_equal(b.nnz, 2)
|
422
|
+
assert_equal(x.nnz, 2)
|
423
|
+
assert_allclose(x.toarray(), b.toarray(), atol=1e-12, rtol=1e-12)
|
424
|
+
|
425
|
+
def test_dtype_cast(self):
|
426
|
+
A_real = scipy.sparse.csr_array([[1, 2, 0],
|
427
|
+
[0, 0, 3],
|
428
|
+
[4, 0, 5]])
|
429
|
+
A_complex = scipy.sparse.csr_array([[1, 2, 0],
|
430
|
+
[0, 0, 3],
|
431
|
+
[4, 0, 5 + 1j]])
|
432
|
+
b_real = np.array([1,1,1])
|
433
|
+
b_complex = np.array([1,1,1]) + 1j*np.array([1,1,1])
|
434
|
+
x = spsolve(A_real, b_real)
|
435
|
+
assert_(np.issubdtype(x.dtype, np.floating))
|
436
|
+
x = spsolve(A_real, b_complex)
|
437
|
+
assert_(np.issubdtype(x.dtype, np.complexfloating))
|
438
|
+
x = spsolve(A_complex, b_real)
|
439
|
+
assert_(np.issubdtype(x.dtype, np.complexfloating))
|
440
|
+
x = spsolve(A_complex, b_complex)
|
441
|
+
assert_(np.issubdtype(x.dtype, np.complexfloating))
|
442
|
+
|
443
|
+
@pytest.mark.slow
|
444
|
+
@pytest.mark.skipif(not has_umfpack, reason="umfpack not available")
|
445
|
+
def test_bug_8278(self):
|
446
|
+
check_free_memory(8000)
|
447
|
+
use_solver(useUmfpack=True)
|
448
|
+
A, b = setup_bug_8278()
|
449
|
+
x = spsolve(A, b)
|
450
|
+
assert_array_almost_equal(A @ x, b)
|
451
|
+
|
452
|
+
|
453
|
+
class TestSplu:
|
454
|
+
def setup_method(self):
|
455
|
+
use_solver(useUmfpack=False)
|
456
|
+
n = 40
|
457
|
+
d = arange(n) + 1
|
458
|
+
self.n = n
|
459
|
+
self.A = dia_array(((d, 2*d, d[::-1]), (-3, 0, 5)), shape=(n, n)).tocsc()
|
460
|
+
|
461
|
+
def _smoketest(self, spxlu, check, dtype, idx_dtype):
|
462
|
+
if np.issubdtype(dtype, np.complexfloating):
|
463
|
+
A = self.A + 1j*self.A.T
|
464
|
+
else:
|
465
|
+
A = self.A
|
466
|
+
|
467
|
+
A = A.astype(dtype)
|
468
|
+
A.indices = A.indices.astype(idx_dtype, copy=False)
|
469
|
+
A.indptr = A.indptr.astype(idx_dtype, copy=False)
|
470
|
+
lu = spxlu(A)
|
471
|
+
|
472
|
+
rng = np.random.RandomState(1234)
|
473
|
+
|
474
|
+
# Input shapes
|
475
|
+
for k in [None, 1, 2, self.n, self.n+2]:
|
476
|
+
msg = f"k={k!r}"
|
477
|
+
|
478
|
+
if k is None:
|
479
|
+
b = rng.rand(self.n)
|
480
|
+
else:
|
481
|
+
b = rng.rand(self.n, k)
|
482
|
+
|
483
|
+
if np.issubdtype(dtype, np.complexfloating):
|
484
|
+
b = b + 1j*rng.rand(*b.shape)
|
485
|
+
b = b.astype(dtype)
|
486
|
+
|
487
|
+
x = lu.solve(b)
|
488
|
+
check(A, b, x, msg)
|
489
|
+
|
490
|
+
x = lu.solve(b, 'T')
|
491
|
+
check(A.T, b, x, msg)
|
492
|
+
|
493
|
+
x = lu.solve(b, 'H')
|
494
|
+
check(A.T.conj(), b, x, msg)
|
495
|
+
|
496
|
+
@pytest.mark.thread_unsafe
|
497
|
+
@sup_sparse_efficiency
|
498
|
+
def test_splu_smoketest(self):
|
499
|
+
self._internal_test_splu_smoketest()
|
500
|
+
|
501
|
+
def _internal_test_splu_smoketest(self):
|
502
|
+
# Check that splu works at all
|
503
|
+
def check(A, b, x, msg=""):
|
504
|
+
eps = np.finfo(A.dtype).eps
|
505
|
+
r = A @ x
|
506
|
+
assert_(abs(r - b).max() < 1e3*eps, msg)
|
507
|
+
|
508
|
+
for dtype in [np.float32, np.float64, np.complex64, np.complex128]:
|
509
|
+
for idx_dtype in [np.int32, np.int64]:
|
510
|
+
self._smoketest(splu, check, dtype, idx_dtype)
|
511
|
+
|
512
|
+
@pytest.mark.thread_unsafe
|
513
|
+
@sup_sparse_efficiency
|
514
|
+
def test_spilu_smoketest(self):
|
515
|
+
self._internal_test_spilu_smoketest()
|
516
|
+
|
517
|
+
def _internal_test_spilu_smoketest(self):
|
518
|
+
errors = []
|
519
|
+
|
520
|
+
def check(A, b, x, msg=""):
|
521
|
+
r = A @ x
|
522
|
+
err = abs(r - b).max()
|
523
|
+
assert_(err < 1e-2, msg)
|
524
|
+
if b.dtype in (np.float64, np.complex128):
|
525
|
+
errors.append(err)
|
526
|
+
|
527
|
+
for dtype in [np.float32, np.float64, np.complex64, np.complex128]:
|
528
|
+
for idx_dtype in [np.int32, np.int64]:
|
529
|
+
self._smoketest(spilu, check, dtype, idx_dtype)
|
530
|
+
|
531
|
+
assert_(max(errors) > 1e-5)
|
532
|
+
|
533
|
+
@pytest.mark.thread_unsafe
|
534
|
+
@sup_sparse_efficiency
|
535
|
+
def test_spilu_drop_rule(self):
|
536
|
+
# Test passing in the drop_rule argument to spilu.
|
537
|
+
A = eye_array(2)
|
538
|
+
|
539
|
+
rules = [
|
540
|
+
b'basic,area'.decode('ascii'), # unicode
|
541
|
+
b'basic,area', # ascii
|
542
|
+
[b'basic', b'area'.decode('ascii')]
|
543
|
+
]
|
544
|
+
for rule in rules:
|
545
|
+
# Argument should be accepted
|
546
|
+
assert_(isinstance(spilu(A, drop_rule=rule), SuperLU))
|
547
|
+
|
548
|
+
def test_splu_nnz0(self):
|
549
|
+
A = csc_array((5,5), dtype='d')
|
550
|
+
assert_raises(RuntimeError, splu, A)
|
551
|
+
|
552
|
+
def test_spilu_nnz0(self):
|
553
|
+
A = csc_array((5,5), dtype='d')
|
554
|
+
assert_raises(RuntimeError, spilu, A)
|
555
|
+
|
556
|
+
def test_splu_basic(self):
|
557
|
+
# Test basic splu functionality.
|
558
|
+
n = 30
|
559
|
+
rng = np.random.RandomState(12)
|
560
|
+
a = rng.rand(n, n)
|
561
|
+
a[a < 0.95] = 0
|
562
|
+
# First test with a singular matrix
|
563
|
+
a[:, 0] = 0
|
564
|
+
a_ = csc_array(a)
|
565
|
+
# Matrix is exactly singular
|
566
|
+
assert_raises(RuntimeError, splu, a_)
|
567
|
+
|
568
|
+
# Make a diagonal dominant, to make sure it is not singular
|
569
|
+
a += 4*eye(n)
|
570
|
+
a_ = csc_array(a)
|
571
|
+
lu = splu(a_)
|
572
|
+
b = ones(n)
|
573
|
+
x = lu.solve(b)
|
574
|
+
assert_almost_equal(dot(a, x), b)
|
575
|
+
|
576
|
+
def test_splu_perm(self):
|
577
|
+
# Test the permutation vectors exposed by splu.
|
578
|
+
n = 30
|
579
|
+
rng = np.random.default_rng(1342354)
|
580
|
+
a = rng.random((n, n))
|
581
|
+
a[a < 0.95] = 0
|
582
|
+
# Make a diagonal dominant, to make sure it is not singular
|
583
|
+
a += 4*eye(n)
|
584
|
+
a_ = csc_array(a)
|
585
|
+
lu = splu(a_)
|
586
|
+
# Check that the permutation indices do belong to [0, n-1].
|
587
|
+
for perm in (lu.perm_r, lu.perm_c):
|
588
|
+
assert_(all(perm > -1))
|
589
|
+
assert_(all(perm < n))
|
590
|
+
assert_equal(len(unique(perm)), len(perm))
|
591
|
+
|
592
|
+
# Now make a symmetric, and test that the two permutation vectors are
|
593
|
+
# the same
|
594
|
+
# Note: a += a.T relies on undefined behavior.
|
595
|
+
a = a + a.T
|
596
|
+
a_ = csc_array(a)
|
597
|
+
lu = splu(a_)
|
598
|
+
assert_array_equal(lu.perm_r, lu.perm_c)
|
599
|
+
|
600
|
+
@pytest.mark.parametrize("splu_fun, rtol", [(splu, 1e-7), (spilu, 1e-1)])
|
601
|
+
def test_natural_permc(self, splu_fun, rtol):
|
602
|
+
# Test that the "NATURAL" permc_spec does not permute the matrix
|
603
|
+
rng = np.random.RandomState(42)
|
604
|
+
n = 500
|
605
|
+
p = 0.01
|
606
|
+
A = scipy.sparse.random(n, n, p, random_state=rng)
|
607
|
+
x = rng.rand(n)
|
608
|
+
# Make A diagonal dominant to make sure it is not singular
|
609
|
+
A += (n+1)*scipy.sparse.eye_array(n)
|
610
|
+
A_ = csc_array(A)
|
611
|
+
b = A_ @ x
|
612
|
+
|
613
|
+
# without permc_spec, permutation is not identity
|
614
|
+
lu = splu_fun(A_)
|
615
|
+
assert_(np.any(lu.perm_c != np.arange(n)))
|
616
|
+
|
617
|
+
# with permc_spec="NATURAL", permutation is identity
|
618
|
+
lu = splu_fun(A_, permc_spec="NATURAL")
|
619
|
+
assert_array_equal(lu.perm_c, np.arange(n))
|
620
|
+
|
621
|
+
# Also, lu decomposition is valid
|
622
|
+
x2 = lu.solve(b)
|
623
|
+
assert_allclose(x, x2, rtol=rtol)
|
624
|
+
|
625
|
+
@pytest.mark.skipif(not hasattr(sys, 'getrefcount'), reason="no sys.getrefcount")
|
626
|
+
def test_lu_refcount(self):
|
627
|
+
# Test that we are keeping track of the reference count with splu.
|
628
|
+
n = 30
|
629
|
+
rng = np.random.default_rng(1342354)
|
630
|
+
a = rng.random((n, n))
|
631
|
+
a[a < 0.95] = 0
|
632
|
+
# Make a diagonal dominant, to make sure it is not singular
|
633
|
+
a += 4*eye(n)
|
634
|
+
a_ = csc_array(a)
|
635
|
+
lu = splu(a_)
|
636
|
+
|
637
|
+
# And now test that we don't have a refcount bug
|
638
|
+
rc = sys.getrefcount(lu)
|
639
|
+
for attr in ('perm_r', 'perm_c'):
|
640
|
+
perm = getattr(lu, attr)
|
641
|
+
assert_equal(sys.getrefcount(lu), rc + 1)
|
642
|
+
del perm
|
643
|
+
assert_equal(sys.getrefcount(lu), rc)
|
644
|
+
|
645
|
+
def test_bad_inputs(self):
|
646
|
+
A = self.A.tocsc()
|
647
|
+
rng = np.random.default_rng(235634)
|
648
|
+
|
649
|
+
assert_raises(ValueError, splu, A[:,:4])
|
650
|
+
assert_raises(ValueError, spilu, A[:,:4])
|
651
|
+
|
652
|
+
for lu in [splu(A), spilu(A)]:
|
653
|
+
b = rng.random(42)
|
654
|
+
B = rng.random((42, 3))
|
655
|
+
BB = rng.random((self.n, 3, 9))
|
656
|
+
assert_raises(ValueError, lu.solve, b)
|
657
|
+
assert_raises(ValueError, lu.solve, B)
|
658
|
+
assert_raises(ValueError, lu.solve, BB)
|
659
|
+
assert_raises(TypeError, lu.solve,
|
660
|
+
b.astype(np.complex64))
|
661
|
+
assert_raises(TypeError, lu.solve,
|
662
|
+
b.astype(np.complex128))
|
663
|
+
|
664
|
+
@pytest.mark.thread_unsafe
|
665
|
+
@sup_sparse_efficiency
|
666
|
+
def test_superlu_dlamch_i386_nan(self):
|
667
|
+
# SuperLU 4.3 calls some functions returning floats without
|
668
|
+
# declaring them. On i386@linux call convention, this fails to
|
669
|
+
# clear floating point registers after call. As a result, NaN
|
670
|
+
# can appear in the next floating point operation made.
|
671
|
+
#
|
672
|
+
# Here's a test case that triggered the issue.
|
673
|
+
n = 8
|
674
|
+
d = np.arange(n) + 1
|
675
|
+
A = dia_array(((d, 2*d, d[::-1]), (-3, 0, 5)), shape=(n, n))
|
676
|
+
A = A.astype(np.float32)
|
677
|
+
spilu(A)
|
678
|
+
A = A + 1j*A
|
679
|
+
B = A.toarray()
|
680
|
+
assert_(not np.isnan(B).any())
|
681
|
+
|
682
|
+
@pytest.mark.thread_unsafe
|
683
|
+
@sup_sparse_efficiency
|
684
|
+
def test_lu_attr(self):
|
685
|
+
|
686
|
+
def check(dtype, complex_2=False):
|
687
|
+
A = self.A.astype(dtype)
|
688
|
+
|
689
|
+
if complex_2:
|
690
|
+
A = A + 1j*A.T
|
691
|
+
|
692
|
+
n = A.shape[0]
|
693
|
+
lu = splu(A)
|
694
|
+
|
695
|
+
# Check that the decomposition is as advertised
|
696
|
+
|
697
|
+
Pc = np.zeros((n, n))
|
698
|
+
Pc[np.arange(n), lu.perm_c] = 1
|
699
|
+
|
700
|
+
Pr = np.zeros((n, n))
|
701
|
+
Pr[lu.perm_r, np.arange(n)] = 1
|
702
|
+
|
703
|
+
Ad = A.toarray()
|
704
|
+
lhs = Pr.dot(Ad).dot(Pc)
|
705
|
+
rhs = (lu.L @ lu.U).toarray()
|
706
|
+
|
707
|
+
eps = np.finfo(dtype).eps
|
708
|
+
|
709
|
+
assert_allclose(lhs, rhs, atol=100*eps)
|
710
|
+
|
711
|
+
check(np.float32)
|
712
|
+
check(np.float64)
|
713
|
+
check(np.complex64)
|
714
|
+
check(np.complex128)
|
715
|
+
check(np.complex64, True)
|
716
|
+
check(np.complex128, True)
|
717
|
+
|
718
|
+
@pytest.mark.thread_unsafe
|
719
|
+
@pytest.mark.slow
|
720
|
+
@sup_sparse_efficiency
|
721
|
+
def test_threads_parallel(self):
|
722
|
+
oks = []
|
723
|
+
|
724
|
+
def worker():
|
725
|
+
try:
|
726
|
+
self.test_splu_basic()
|
727
|
+
self._internal_test_splu_smoketest()
|
728
|
+
self._internal_test_spilu_smoketest()
|
729
|
+
oks.append(True)
|
730
|
+
except Exception:
|
731
|
+
pass
|
732
|
+
|
733
|
+
threads = [threading.Thread(target=worker)
|
734
|
+
for k in range(20)]
|
735
|
+
for t in threads:
|
736
|
+
t.start()
|
737
|
+
for t in threads:
|
738
|
+
t.join()
|
739
|
+
|
740
|
+
assert_equal(len(oks), 20)
|
741
|
+
|
742
|
+
@pytest.mark.thread_unsafe
|
743
|
+
def test_singular_matrix(self):
|
744
|
+
# Test that SuperLU does not print to stdout when a singular matrix is
|
745
|
+
# passed. See gh-20993.
|
746
|
+
A = eye_array(10, format='csr')
|
747
|
+
A[-1, -1] = 0
|
748
|
+
b = np.zeros(10)
|
749
|
+
with pytest.warns(MatrixRankWarning):
|
750
|
+
res = spsolve(A, b)
|
751
|
+
assert np.isnan(res).all()
|
752
|
+
|
753
|
+
|
754
|
+
class TestGstrsErrors:
|
755
|
+
def setup_method(self):
|
756
|
+
self.A = array([[1.0,2.0,3.0],[4.0,5.0,6.0],[7.0,8.0,9.0]], dtype=np.float64)
|
757
|
+
self.b = np.array([[1.0],[2.0],[3.0]], dtype=np.float64)
|
758
|
+
|
759
|
+
def test_trans(self):
|
760
|
+
L = scipy.sparse.tril(self.A, format='csc')
|
761
|
+
U = scipy.sparse.triu(self.A, k=1, format='csc')
|
762
|
+
with assert_raises(ValueError, match="trans must be N, T, or H"):
|
763
|
+
_superlu.gstrs('X', L.shape[0], L.nnz, L.data, L.indices, L.indptr,
|
764
|
+
U.shape[0], U.nnz, U.data, U.indices, U.indptr, self.b)
|
765
|
+
|
766
|
+
def test_shape_LU(self):
|
767
|
+
L = scipy.sparse.tril(self.A[0:2,0:2], format='csc')
|
768
|
+
U = scipy.sparse.triu(self.A, k=1, format='csc')
|
769
|
+
with assert_raises(ValueError, match="L and U must have the same dimension"):
|
770
|
+
_superlu.gstrs('N', L.shape[0], L.nnz, L.data, L.indices, L.indptr,
|
771
|
+
U.shape[0], U.nnz, U.data, U.indices, U.indptr, self.b)
|
772
|
+
|
773
|
+
def test_shape_b(self):
|
774
|
+
L = scipy.sparse.tril(self.A, format='csc')
|
775
|
+
U = scipy.sparse.triu(self.A, k=1, format='csc')
|
776
|
+
with assert_raises(ValueError, match="right hand side array has invalid shape"):
|
777
|
+
_superlu.gstrs('N', L.shape[0], L.nnz, L.data, L.indices, L.indptr,
|
778
|
+
U.shape[0], U.nnz, U.data, U.indices, U.indptr,
|
779
|
+
self.b[0:2])
|
780
|
+
|
781
|
+
def test_types_differ(self):
|
782
|
+
L = scipy.sparse.tril(self.A.astype(np.float32), format='csc')
|
783
|
+
U = scipy.sparse.triu(self.A, k=1, format='csc')
|
784
|
+
with assert_raises(TypeError, match="nzvals types of L and U differ"):
|
785
|
+
_superlu.gstrs('N', L.shape[0], L.nnz, L.data, L.indices, L.indptr,
|
786
|
+
U.shape[0], U.nnz, U.data, U.indices, U.indptr, self.b)
|
787
|
+
|
788
|
+
def test_types_unsupported(self):
|
789
|
+
L = scipy.sparse.tril(self.A.astype(np.uint8), format='csc')
|
790
|
+
U = scipy.sparse.triu(self.A.astype(np.uint8), k=1, format='csc')
|
791
|
+
with assert_raises(TypeError, match="nzvals is not of a type supported"):
|
792
|
+
_superlu.gstrs('N', L.shape[0], L.nnz, L.data, L.indices, L.indptr,
|
793
|
+
U.shape[0], U.nnz, U.data, U.indices, U.indptr,
|
794
|
+
self.b.astype(np.uint8))
|
795
|
+
|
796
|
+
class TestSpsolveTriangular:
|
797
|
+
def setup_method(self):
|
798
|
+
use_solver(useUmfpack=False)
|
799
|
+
|
800
|
+
@pytest.mark.parametrize("fmt",["csr","csc"])
|
801
|
+
def test_zero_diagonal(self,fmt):
|
802
|
+
n = 5
|
803
|
+
rng = np.random.default_rng(43876432987)
|
804
|
+
A = rng.standard_normal((n, n))
|
805
|
+
b = np.arange(n)
|
806
|
+
A = scipy.sparse.tril(A, k=0, format=fmt)
|
807
|
+
|
808
|
+
x = spsolve_triangular(A, b, unit_diagonal=True, lower=True)
|
809
|
+
|
810
|
+
A.setdiag(1)
|
811
|
+
assert_allclose(A.dot(x), b)
|
812
|
+
|
813
|
+
# Regression test from gh-15199
|
814
|
+
A = np.array([[0, 0, 0], [1, 0, 0], [1, 1, 0]], dtype=np.float64)
|
815
|
+
b = np.array([1., 2., 3.])
|
816
|
+
with suppress_warnings() as sup:
|
817
|
+
sup.filter(SparseEfficiencyWarning, "CSC or CSR matrix format is")
|
818
|
+
spsolve_triangular(A, b, unit_diagonal=True)
|
819
|
+
|
820
|
+
@pytest.mark.parametrize("fmt",["csr","csc"])
|
821
|
+
def test_singular(self,fmt):
|
822
|
+
n = 5
|
823
|
+
if fmt == "csr":
|
824
|
+
A = csr_array((n, n))
|
825
|
+
else:
|
826
|
+
A = csc_array((n, n))
|
827
|
+
b = np.arange(n)
|
828
|
+
for lower in (True, False):
|
829
|
+
assert_raises(scipy.linalg.LinAlgError,
|
830
|
+
spsolve_triangular, A, b, lower=lower)
|
831
|
+
|
832
|
+
@pytest.mark.thread_unsafe
|
833
|
+
@sup_sparse_efficiency
|
834
|
+
def test_bad_shape(self):
|
835
|
+
# A is not square.
|
836
|
+
A = np.zeros((3, 4))
|
837
|
+
b = ones((4, 1))
|
838
|
+
assert_raises(ValueError, spsolve_triangular, A, b)
|
839
|
+
# A2 and b2 have incompatible shapes.
|
840
|
+
A2 = csr_array(eye(3))
|
841
|
+
b2 = array([1.0, 2.0])
|
842
|
+
assert_raises(ValueError, spsolve_triangular, A2, b2)
|
843
|
+
|
844
|
+
@pytest.mark.thread_unsafe
|
845
|
+
@sup_sparse_efficiency
|
846
|
+
def test_input_types(self):
|
847
|
+
A = array([[1., 0.], [1., 2.]])
|
848
|
+
b = array([[2., 0.], [2., 2.]])
|
849
|
+
for matrix_type in (array, csc_array, csr_array):
|
850
|
+
x = spsolve_triangular(matrix_type(A), b, lower=True)
|
851
|
+
assert_array_almost_equal(A.dot(x), b)
|
852
|
+
|
853
|
+
@pytest.mark.thread_unsafe
|
854
|
+
@pytest.mark.slow
|
855
|
+
@sup_sparse_efficiency
|
856
|
+
@pytest.mark.parametrize("n", [10, 10**2, 10**3])
|
857
|
+
@pytest.mark.parametrize("m", [1, 10])
|
858
|
+
@pytest.mark.parametrize("lower", [True, False])
|
859
|
+
@pytest.mark.parametrize("format", ["csr", "csc"])
|
860
|
+
@pytest.mark.parametrize("unit_diagonal", [False, True])
|
861
|
+
@pytest.mark.parametrize("choice_of_A", ["real", "complex"])
|
862
|
+
@pytest.mark.parametrize("choice_of_b", ["floats", "ints", "complexints"])
|
863
|
+
def test_random(self, n, m, lower, format, unit_diagonal, choice_of_A, choice_of_b):
|
864
|
+
def random_triangle_matrix(n, lower=True, format="csr", choice_of_A="real"):
|
865
|
+
if choice_of_A == "real":
|
866
|
+
dtype = np.float64
|
867
|
+
elif choice_of_A == "complex":
|
868
|
+
dtype = np.complex128
|
869
|
+
else:
|
870
|
+
raise ValueError("choice_of_A must be 'real' or 'complex'.")
|
871
|
+
rng = np.random.default_rng(789002319)
|
872
|
+
rvs = rng.random
|
873
|
+
A = scipy.sparse.random(n, n, density=0.1, format='lil', dtype=dtype,
|
874
|
+
random_state=rng, data_rvs=rvs)
|
875
|
+
if lower:
|
876
|
+
A = scipy.sparse.tril(A, format="lil")
|
877
|
+
else:
|
878
|
+
A = scipy.sparse.triu(A, format="lil")
|
879
|
+
for i in range(n):
|
880
|
+
A[i, i] = np.random.rand() + 1
|
881
|
+
if format == "csc":
|
882
|
+
A = A.tocsc(copy=False)
|
883
|
+
else:
|
884
|
+
A = A.tocsr(copy=False)
|
885
|
+
return A
|
886
|
+
|
887
|
+
rng = np.random.default_rng(1234)
|
888
|
+
A = random_triangle_matrix(n, lower=lower)
|
889
|
+
if choice_of_b == "floats":
|
890
|
+
b = rng.random((n, m))
|
891
|
+
elif choice_of_b == "ints":
|
892
|
+
b = rng.integers(-9, 9, (n, m))
|
893
|
+
elif choice_of_b == "complexints":
|
894
|
+
b = rng.integers(-9, 9, (n, m)) + rng.integers(-9, 9, (n, m)) * 1j
|
895
|
+
else:
|
896
|
+
raise ValueError(
|
897
|
+
"choice_of_b must be 'floats', 'ints', or 'complexints'.")
|
898
|
+
x = spsolve_triangular(A, b, lower=lower, unit_diagonal=unit_diagonal)
|
899
|
+
if unit_diagonal:
|
900
|
+
A.setdiag(1)
|
901
|
+
assert_allclose(A.dot(x), b, atol=1.5e-6)
|
902
|
+
|
903
|
+
|
904
|
+
@pytest.mark.thread_unsafe
|
905
|
+
@sup_sparse_efficiency
|
906
|
+
@pytest.mark.parametrize("nnz", [10, 10**2, 10**3])
|
907
|
+
@pytest.mark.parametrize("fmt", ["csr", "csc", "coo", "dia", "dok", "lil"])
|
908
|
+
def test_is_sptriangular_and_spbandwidth(nnz, fmt):
|
909
|
+
rng = np.random.default_rng(42)
|
910
|
+
|
911
|
+
N = nnz // 2
|
912
|
+
dens = 0.1
|
913
|
+
A = scipy.sparse.random_array((N, N), density=dens, format="csr", rng=rng)
|
914
|
+
A[1, 3] = A[3, 1] = 22 # ensure not upper or lower
|
915
|
+
A = A.asformat(fmt)
|
916
|
+
AU = scipy.sparse.triu(A, format=fmt)
|
917
|
+
AL = scipy.sparse.tril(A, format=fmt)
|
918
|
+
D = 0.1 * scipy.sparse.eye_array(N, format=fmt)
|
919
|
+
|
920
|
+
assert is_sptriangular(A) == (False, False)
|
921
|
+
assert is_sptriangular(AL) == (True, False)
|
922
|
+
assert is_sptriangular(AU) == (False, True)
|
923
|
+
assert is_sptriangular(D) == (True, True)
|
924
|
+
|
925
|
+
assert spbandwidth(A) == scipy.linalg.bandwidth(A.toarray())
|
926
|
+
assert spbandwidth(AU) == scipy.linalg.bandwidth(AU.toarray())
|
927
|
+
assert spbandwidth(AL) == scipy.linalg.bandwidth(AL.toarray())
|
928
|
+
assert spbandwidth(D) == scipy.linalg.bandwidth(D.toarray())
|