meta-edc 1.1.8__py3-none-any.whl → 1.1.12__py3-none-any.whl

meta_edc-1.1.12.dist-info/WHEEL

@@ -0,0 +1,4 @@
+Wheel-Version: 1.0
+Generator: uv 0.8.22
+Root-Is-Purelib: true
+Tag: py3-none-any

meta_lists/migrations/0020_alter_abnormalfootappearanceobservations_extra_value_and_more.py

@@ -0,0 +1,404 @@
+# Generated by Django 5.2.6 on 2025-09-24 05:45
+
+from django.db import migrations, models
+
+
+class Migration(migrations.Migration):
+
+    dependencies = [
+        ("meta_lists", "0019_auto_20250128_0143"),
+    ]
+
+    operations = [
+        migrations.AlterField(
+            model_name="abnormalfootappearanceobservations",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="abnormalfootappearanceobservations",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="abnormalfootappearanceobservations",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="arvregimens",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="arvregimens",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="arvregimens",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="baselinesymptoms",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="baselinesymptoms",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="baselinesymptoms",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="complications",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="complications",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="complications",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="diabetessymptoms",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="diabetessymptoms",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="diabetessymptoms",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="dmmedications",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="dmmedications",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="dmmedications",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="dmtreatments",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="dmtreatments",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="dmtreatments",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="healthcareworkers",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="healthcareworkers",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="healthcareworkers",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="hypertensionmedications",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="hypertensionmedications",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="hypertensionmedications",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="investigations",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="investigations",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="investigations",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="missedreferralreasons",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="missedreferralreasons",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="missedreferralreasons",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="nonadherencereasons",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="nonadherencereasons",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="nonadherencereasons",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="offstudyreasons",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="offstudyreasons",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="offstudyreasons",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="oiprophylaxis",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="oiprophylaxis",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="oiprophylaxis",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="subjectvisitmissedreasons",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="subjectvisitmissedreasons",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="subjectvisitmissedreasons",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="symptoms",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="symptoms",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="symptoms",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+        migrations.AlterField(
+            model_name="transferreasons",
+            name="extra_value",
+            field=models.CharField(default="", max_length=250),
+        ),
+        migrations.AlterField(
+            model_name="transferreasons",
+            name="field_name",
+            field=models.CharField(
+                blank=True,
+                default="",
+                editable=False,
+                help_text="Not required",
+                max_length=25,
+            ),
+        ),
+        migrations.AlterField(
+            model_name="transferreasons",
+            name="plural_name",
+            field=models.CharField(
+                default="", max_length=250, verbose_name="Plural name"
+            ),
+        ),
+    ]

meta_pharmacy/admin/__init__.py

@@ -1,2 +1,7 @@
 from .rx_admin import RxAdmin
 from .substitutions_admin import SubstitutionsAdmin
+
+__all__ = [
+    "RxAdmin",
+    "SubstitutionsAdmin",
+]

meta_pharmacy/admin/substitutions_admin.py

@@ -54,11 +54,11 @@ class SubstitutionsAdmin(
         "report_date",
     )
 
-    radio_fields = {"arm_match": admin.VERTICAL}
+    radio_fields = {"arm_match": admin.VERTICAL}  # noqa: RUF012
 
     list_filter = ("arm_match", ReportDateListFilter)
 
-    search_fields = ["subject_identifier", "sid", "dispensed_sid"]
+    search_fields = ("subject_identifier", "sid", "dispensed_sid")
 
     @admin.display(description="Report date", ordering="report_datetime")
     def report_date(self, obj) -> str | None:

meta_pharmacy/forms/__init__.py

@@ -1,2 +1,4 @@
 from .rx_form import RxForm
 from .substitutions_form import SubstitutionsForm
+
+__all__ = ["RxForm", "SubstitutionsForm"]

meta_pharmacy/forms/substitutions_form.py

@@ -29,8 +29,8 @@ class SubstitutionsForm(
         if self.cleaned_data.get("sid"):
             try:
                 obj = Rx.objects.get(rando_sid=self.cleaned_data.get("sid"))
-            except ObjectDoesNotExist:
-                raise forms.ValidationError({"sid": "Unknown SID for this trial"})
+            except ObjectDoesNotExist as e:
+                raise forms.ValidationError({"sid": "Unknown SID for this trial"}) from e
             else:
                 if obj.site.id != self.site.id:
                     raise forms.ValidationError(
@@ -46,8 +46,10 @@ class SubstitutionsForm(
                 RandomizationList.objects.get(
                     sid=self.cleaned_data.get("dispensed_sid"),
                 )
-            except ObjectDoesNotExist:
-                raise forms.ValidationError({"dispensed_sid": "Invalid SID for this trial"})
+            except ObjectDoesNotExist as e:
+                raise forms.ValidationError(
+                    {"dispensed_sid": "Invalid SID for this trial"}
+                ) from e
 
     class Meta:
         model = Substitutions

meta_pharmacy/labels/__init__.py

@@ -1,5 +1,7 @@
 from .draw_label_for_subject_with_code128 import draw_label_for_subject_with_code128
 from .draw_label_with_test_data import draw_label_with_test_data
 
-# from .label_data import LabelData
-# from .print_sheets import print_sheets
+__all__ = [
+    "draw_label_for_subject_with_code128",
+    "draw_label_with_test_data",
+]

meta_pharmacy/labels/draw_label_for_subject_with_barcode.py

@@ -6,7 +6,7 @@ from reportlab.graphics.shapes import Drawing, Group, String
 from reportlab.pdfbase.pdfmetrics import stringWidth
 
 
-def draw_label_for_subject_with_barcode(
+def draw_label_for_subject_with_barcode(  # noqa: PLR0913
     barcode_cls,
     barcode_opts: dict,
     label: Drawing,
@@ -26,7 +26,6 @@ def draw_label_for_subject_with_barcode(
         label.add(String(15, height - 40, str(obj.code), fontSize=10))
         label.add(String(15, height - 60, str(obj.location), fontSize=10))
     else:
-
         draw_label_watermark(label, width, height, fontSize=18)
 
         br = barcode_cls(**barcode_opts)

meta_pharmacy/labels/draw_label_with_test_data.py

@@ -1,5 +1,5 @@
 from django.apps import apps as django_apps
-from edc_utils import get_utcnow
+from django.utils import timezone
 
 
 def draw_label_with_test_data() -> dict:
@@ -18,7 +18,7 @@ def draw_label_with_test_data() -> dict:
         code="A9B8C7",
         location=location_model_cls.objects.filter(site__isnull=False).first(),
         container=container,
-        lot=lot_model_cls(lot_no="999999999", expiration_date=get_utcnow().date()),
+        lot=lot_model_cls(lot_no="999999999", expiration_date=timezone.now().date()),
         receive_item=receive_item_model_cls(
             receive=receive_model_cls(receive_identifier="99999999"),
             receive_item_identifier="99999999",

meta_pharmacy/labels/label_data.py

@@ -3,11 +3,10 @@ import string
 
 
 class LabelData:
-
     def __init__(self):
         self.subject_identifier = "999-99-9999-9"  # nosec B311
         self.reference = "".join(
-            random.choices(string.ascii_letters.upper() + "23456789", k=6)  # nosec B311
+            random.choices(string.ascii_letters.upper() + "23456789", k=6)  # nosec B311  # noqa: S311
         )
         self.sid = "12345"
         self.site_name = "AMANA"

meta_pharmacy/labels/print_sheets.py

@@ -1,4 +1,4 @@
-import os.path
+import sys
 from pathlib import Path
 
 from edc_sites.site import sites
@@ -81,7 +81,7 @@ def print_sheets(labels: list[Label], path: Path | None = None, verbose: bool |
     )
 
     if not path:
-        path = Path(os.path.dirname(__file__))
+        path = Path(__file__).resolve()
     path = str(path / "meta_labels.pdf")
     sheet = Sheet(specs, draw_label, border=True)
 
@@ -89,9 +89,7 @@ def print_sheets(labels: list[Label], path: Path | None = None, verbose: bool |
 
     # Save the file and we are done.
     sheet.save(path)
-    msg = "{0:d} label(s) output on {1:d} page(s) to {2}.".format(
-        sheet.label_count, sheet.page_count, path
-    )
+    msg = f"{sheet.label_count:d} label(s) output on {sheet.page_count:d} page(s) to {path}.\n"
     if verbose:
-        print(msg)
+        sys.stdout.write(msg)
     return msg

meta_pharmacy/migrations/0002_initial.py

@@ -7,7 +7,7 @@ import django.db.models.deletion
 import django_audit_fields.fields.hostname_modification_field
 import django_audit_fields.fields.userfield
 import django_audit_fields.fields.uuid_auto_field
-import django_audit_fields.models.audit_model_mixin
+import django.utils.timezone
 import django_revision.revision_field
 import edc_pharmacy.models.prescription.rx
 import edc_sites.managers
@@ -20,7 +20,6 @@ import meta_pharmacy.models
 
 
 class Migration(migrations.Migration):
-
     initial = True
 
     dependencies = [
@@ -62,15 +61,11 @@ class Migration(migrations.Migration):
                 ),
                 (
                     "created",
-                    models.DateTimeField(
-                        blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
-                    ),
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
                 ),
                 (
                     "modified",
-                    models.DateTimeField(
-                        blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
-                    ),
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
                 ),
                 (
                     "user_created",
@@ -346,15 +341,11 @@ class Migration(migrations.Migration):
                 ),
                 (
                     "created",
-                    models.DateTimeField(
-                        blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
-                    ),
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
                 ),
                 (
                     "modified",
-                    models.DateTimeField(
-                        blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
-                    ),
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
                 ),
                 (
                     "user_created",
@@ -535,15 +526,11 @@ class Migration(migrations.Migration):
                 ),
                 (
                     "created",
-                    models.DateTimeField(
-                        blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
-                    ),
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
                 ),
                 (
                     "modified",
-                    models.DateTimeField(
-                        blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
-                    ),
+                    models.DateTimeField(blank=True, default=django.utils.timezone.now),
                 ),
                 (
                     "user_created",

meta_pharmacy/migrations/0003_auto_20240909_2335.py

@@ -5,6 +5,8 @@ import pandas as pd
 from django.apps import apps as django_apps
 from django.conf import settings
 from django.db import migrations
+from django.utils import timezone
+
 from edc_utils import get_utcnow
 from tqdm import tqdm
 
@@ -29,7 +31,7 @@ def populate_substitutions(apps, schema_editor):
     df["sid"] = df["sid"].apply(pd.to_numeric, errors="coerce")
     df["dispensed_sid"] = df["dispensed_sid"].apply(pd.to_numeric, errors="coerce")
     df["site_id"] = df["site_id"].apply(pd.to_numeric, errors="coerce")
-    now = get_utcnow()
+    now = timezone.now()
     model_cls = django_apps.get_model("meta_pharmacy.substitutions")
     df_error = df[df["dispensed_sid"].isna()]
     df_error = df_error.reset_index()
@@ -56,7 +58,6 @@ def populate_substitutions(apps, schema_editor):
 
 
 class Migration(migrations.Migration):
-
     dependencies = [
         ("meta_pharmacy", "0002_initial"),
     ]