meta-edc 1.1.8__py3-none-any.whl → 1.1.12__py3-none-any.whl
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- meta_ae/action_items.py +2 -1
- meta_ae/admin/__init__.py +11 -0
- meta_ae/admin/ae_susar_admin.py +1 -1
- meta_ae/admin/death_report_admin.py +1 -1
- meta_ae/admin/modeladmin_mixins.py +10 -12
- meta_ae/baker_recipes.py +3 -3
- meta_ae/forms/__init__.py +13 -0
- meta_ae/forms/modelform_mixins.py +2 -2
- meta_ae/migrations/0001_initial.py +27 -27
- meta_ae/migrations/0006_aelocalreview_aesponsorreview.py +5 -5
- meta_ae/migrations/0022_historicalhospitalization_hospitalization.py +5 -13
- meta_ae/migrations/0023_alter_aefollowup_action_identifier_and_more.py +2017 -0
- meta_ae/model_mixins/__init__.py +2 -0
- meta_ae/model_mixins/ae_review_model_mixin.py +6 -6
- meta_ae/model_mixins/death_report_model_mixin.py +3 -3
- meta_ae/models/__init__.py +13 -0
- meta_ae/models/hospitalization.py +3 -3
- meta_ae/pdf_reports/__init__.py +2 -0
- meta_analytics/.DS_Store +0 -0
- meta_analytics/dataframes/__init__.py +24 -0
- meta_analytics/dataframes/get_eos_df.py +1 -2
- meta_analytics/dataframes/get_glucose_df.py +6 -7
- meta_analytics/dataframes/get_glucose_fbg_df.py +2 -3
- meta_analytics/dataframes/get_glucose_fbg_ogtt_df.py +1 -2
- meta_analytics/dataframes/get_last_imp_visits_df.py +5 -6
- meta_analytics/dataframes/glucose_endpoints/__init__.py +2 -0
- meta_analytics/dataframes/glucose_endpoints/endpoint_by_date.py +13 -20
- meta_analytics/dataframes/glucose_endpoints/glucose_endpoints_by_date.py +9 -10
- meta_analytics/dataframes/screening/__init__.py +2 -0
- meta_analytics/dataframes/screening/get_glucose_tested_only_df.py +1 -2
- meta_analytics/dataframes/screening/get_screening_df.py +6 -10
- meta_analytics/dataframes/utils.py +3 -8
- meta_analytics/get_tables.py +1 -2
- meta_analytics/tables/__init__.py +2 -0
- meta_consent/action_items.py +2 -1
- meta_consent/admin/__init__.py +6 -0
- meta_consent/admin/actions/__init__.py +2 -0
- meta_consent/admin/actions/create_missing_prescriptions.py +1 -1
- meta_consent/admin/list_filters.py +2 -2
- meta_consent/admin/modeladmin_mixins.py +3 -4
- meta_consent/admin/subject_consent_v1_ext_admin.py +2 -2
- meta_consent/baker_recipes.py +7 -8
- meta_consent/form_validators/__init__.py +2 -0
- meta_consent/forms/__init__.py +7 -0
- meta_consent/forms/subject_consent_v1_ext_form.py +2 -3
- meta_consent/forms/subject_reconsent_form.py +4 -4
- meta_consent/management/commands/create_missing_prescriptions.py +4 -2
- meta_consent/migrations/0001_initial.py +9 -9
- meta_consent/migrations/0024_historicalsubjectconsentv1.py +3 -8
- meta_consent/migrations/0026_historicalsubjectconsentv1ext_subjectconsentv1ext.py +5 -14
- meta_consent/migrations/0032_alter_historicalsubjectconsent_device_created_and_more.py +678 -0
- meta_consent/models/__init__.py +9 -0
- meta_consent/models/model_mixins.py +1 -2
- meta_consent/models/signals.py +9 -10
- meta_consent/models/subject_consent.py +1 -1
- meta_consent/models/subject_reconsent.py +3 -3
- meta_dashboard/patterns.py +1 -1
- meta_dashboard/templatetags/meta_dashboard_extras.py +1 -1
- meta_dashboard/view_utils/__init__.py +7 -0
- meta_dashboard/view_utils/subject_screening_button.py +9 -16
- meta_dashboard/views/__init__.py +8 -0
- meta_dashboard/views/ae/__init__.py +2 -0
- meta_dashboard/views/ae/ae_listboard_view.py +1 -1
- meta_dashboard/views/ae/death_report_listboard_view.py +1 -1
- meta_dashboard/views/screening/__init__.py +2 -0
- meta_dashboard/views/subject/__init__.py +2 -0
- meta_dashboard/views/subject/dashboard/__init__.py +2 -0
- meta_dashboard/views/subject/dashboard/dashboard_view.py +1 -1
- meta_dashboard/views/subject/listboard/__init__.py +2 -0
- meta_edc/__init__.py +5 -9
- meta_edc/celery.py +1 -1
- meta_edc/celery_live.py +1 -1
- meta_edc/celery_uat.py +1 -1
- meta_edc/management/commands/update_forms_reference.py +10 -12
- meta_edc/settings/debug.py +5 -4
- meta_edc/settings/defaults.py +18 -3
- meta_edc/settings/live.py +3 -1
- meta_edc/settings/logging.py +9 -4
- meta_edc/settings/minimal.py +4 -5
- meta_edc/settings/uat.py +3 -1
- meta_edc/views/__init__.py +2 -0
- meta_edc-1.1.12.dist-info/METADATA +174 -0
- {meta_edc-1.1.8.dist-info → meta_edc-1.1.12.dist-info}/RECORD +413 -526
- meta_edc-1.1.12.dist-info/WHEEL +4 -0
- meta_lists/migrations/0020_alter_abnormalfootappearanceobservations_extra_value_and_more.py +404 -0
- meta_pharmacy/admin/__init__.py +5 -0
- meta_pharmacy/admin/substitutions_admin.py +2 -2
- meta_pharmacy/forms/__init__.py +2 -0
- meta_pharmacy/forms/substitutions_form.py +6 -4
- meta_pharmacy/labels/__init__.py +4 -2
- meta_pharmacy/labels/draw_label_for_subject_with_barcode.py +1 -2
- meta_pharmacy/labels/draw_label_with_test_data.py +2 -2
- meta_pharmacy/labels/label_data.py +1 -2
- meta_pharmacy/labels/print_sheets.py +4 -6
- meta_pharmacy/migrations/0002_initial.py +7 -20
- meta_pharmacy/migrations/0003_auto_20240909_2335.py +3 -2
- meta_pharmacy/migrations/0006_lotnumber_label.py +5 -14
- meta_pharmacy/migrations/0008_remove_lotnumber_medication_and_more.py +5 -6
- meta_pharmacy/migrations/0010_alter_historicallabeldata_device_created_and_more.py +382 -0
- meta_pharmacy/models/__init__.py +7 -0
- meta_pharmacy/models/label_data.py +4 -5
- meta_pharmacy/models/substitutions.py +3 -3
- meta_pharmacy/prepare_meta_pharmacy.py +1 -1
- meta_pharmacy/utils/__init__.py +2 -0
- meta_pharmacy/utils/update_initial_pharmacy_data.py +1 -1
- meta_prn/admin/__init__.py +16 -0
- meta_prn/admin/dm_referral_admin.py +2 -1
- meta_prn/admin/end_of_study_admin.py +6 -7
- meta_prn/admin/loss_to_followup_admin.py +3 -2
- meta_prn/admin/off_study_medication_admin.py +5 -6
- meta_prn/admin/offschedule_admin.py +5 -6
- meta_prn/admin/offschedule_dm_referral_admin.py +6 -6
- meta_prn/admin/offschedule_postnatal_admin.py +7 -7
- meta_prn/admin/offschedule_pregnancy_admin.py +8 -7
- meta_prn/admin/onschedule_admin.py +7 -8
- meta_prn/admin/onschedule_dm_referral_admin.py +6 -7
- meta_prn/admin/pregnancy_notification_admin.py +5 -6
- meta_prn/admin/protocol_incident_admin.py +1 -1
- meta_prn/admin/subject_transfer_admin.py +1 -1
- meta_prn/baker_recipes.py +4 -4
- meta_prn/form_validators/__init__.py +5 -0
- meta_prn/form_validators/end_of_study.py +2 -2
- meta_prn/forms/__init__.py +13 -0
- meta_prn/migrations/0001_initial.py +25 -25
- meta_prn/migrations/0017_auto_20220307_1929.py +5 -5
- meta_prn/migrations/0018_auto_20220309_2106.py +9 -9
- meta_prn/migrations/0021_auto_20220316_2147.py +13 -13
- meta_prn/migrations/0022_auto_20220318_0133.py +9 -9
- meta_prn/migrations/0032_historicalegfrnotification_egfrnotification.py +5 -13
- meta_prn/migrations/0038_alter_endofstudy_delivery_date_and_more.py +5 -13
- meta_prn/migrations/0041_endofstudy_transfer_date_and_more.py +5 -13
- meta_prn/migrations/0057_historicalonscheduledmreferral_and_more.py +13 -38
- meta_prn/migrations/0067_alter_offschedule_managers_and_more.py +2557 -0
- meta_prn/models/__init__.py +20 -0
- meta_prn/models/offschedule.py +4 -4
- meta_prn/models/protocol_incident.py +1 -1
- meta_prn/models/subject_transfer.py +8 -0
- meta_rando/migrations/0001_initial.py +5 -5
- meta_rando/migrations/0006_alter_historicalrandomizationlist_allocated_user_and_more.py +130 -0
- meta_reports/__init__.py +2 -0
- meta_reports/admin/__init__.py +16 -0
- meta_reports/admin/dbviews/__init__.py +13 -0
- meta_reports/admin/dbviews/glucose_summary_admin.py +6 -6
- meta_reports/admin/dbviews/imp_substitutions_admin.py +12 -11
- meta_reports/admin/dbviews/missing_screening_ogtt_admin/__init__.py +5 -0
- meta_reports/admin/dbviews/missing_screening_ogtt_admin/note_model_admin.py +27 -3
- meta_reports/admin/dbviews/missing_screening_ogtt_admin/unmanaged_model_admin.py +6 -6
- meta_reports/admin/dbviews/on_study_missing_lab_values_admin/__init__.py +2 -0
- meta_reports/admin/dbviews/on_study_missing_lab_values_admin/unmanaged_model_admin.py +0 -3
- meta_reports/admin/dbviews/on_study_missing_values_admin/__init__.py +2 -0
- meta_reports/admin/dbviews/patient_history_missing_baseline_cd4_admin.py +8 -8
- meta_reports/admin/dbviews/unattended_three_in_row2_admin.py +6 -6
- meta_reports/admin/dbviews/unattended_three_in_row_admin.py +5 -5
- meta_reports/admin/dbviews/unattended_two_in_row_admin.py +5 -5
- meta_reports/admin/endpoints_admin.py +1 -1
- meta_reports/admin/last_imp_refill_admin.py +9 -9
- meta_reports/admin/list_filters.py +2 -2
- meta_reports/admin/modeladmin_mixins.py +9 -16
- meta_reports/death_report.py +1 -1
- meta_reports/forms/__init__.py +2 -0
- meta_reports/forms/missing_ogtt_note_form.py +2 -3
- meta_reports/management/commands/generate_endpoints.py +5 -4
- meta_reports/migrations/0035_historicalmissingogttnote_missingogttnote.py +5 -14
- meta_reports/migrations/0059_alter_endpoints_created_and_more.py +161 -0
- meta_reports/models/__init__.py +17 -0
- meta_reports/models/dbviews/__init__.py +14 -0
- meta_reports/models/dbviews/glucose_summary/__init__.py +2 -0
- meta_reports/models/dbviews/glucose_summary/unmanaged_model.py +4 -5
- meta_reports/models/dbviews/imp_substitutions/__init__.py +2 -0
- meta_reports/models/dbviews/imp_substitutions/view_definition.py +1 -1
- meta_reports/models/dbviews/missing_screening_ogtt/__init__.py +2 -0
- meta_reports/models/dbviews/missing_screening_ogtt/note_model.py +1 -1
- meta_reports/models/dbviews/missing_screening_ogtt/unmanaged_model.py +4 -3
- meta_reports/models/dbviews/on_study_missing_lab_values/__init__.py +2 -0
- meta_reports/models/dbviews/on_study_missing_lab_values/qa_cases.py +13 -11
- meta_reports/models/dbviews/on_study_missing_values/__init__.py +2 -0
- meta_reports/models/dbviews/on_study_missing_values/qa_cases.py +18 -0
- meta_reports/models/dbviews/patient_history_missing_baseline_cd4/__init__.py +2 -0
- meta_reports/models/dbviews/unattended_three_in_row/__init__.py +2 -0
- meta_reports/models/dbviews/unattended_three_in_row2/__init__.py +2 -0
- meta_reports/models/dbviews/unattended_two_in_row/__init__.py +2 -0
- meta_reports/models/endpoints.py +4 -4
- meta_reports/models/last_imp_refill.py +2 -3
- meta_reports/pdf_report.py +2 -2
- meta_reports/tasks.py +1 -1
- meta_screening/admin/__init__.py +8 -0
- meta_screening/admin/fieldsets.py +13 -14
- meta_screening/admin/list_filters.py +6 -4
- meta_screening/admin/screening_part_one_admin.py +1 -2
- meta_screening/admin/screening_part_three_admin.py +2 -3
- meta_screening/admin/screening_part_two_admin.py +7 -10
- meta_screening/admin/subject_refusal_admin.py +5 -3
- meta_screening/admin/subject_screening_admin.py +4 -4
- meta_screening/baker_recipes.py +9 -9
- meta_screening/eligibility/__init__.py +9 -0
- meta_screening/eligibility/eligibility.py +7 -7
- meta_screening/eligibility/eligibility_part_three/__init__.py +2 -0
- meta_screening/eligibility/eligibility_part_three/base_eligibility_part_three.py +8 -8
- meta_screening/eligibility/eligibility_part_three/eligibility_part_three_phase_three.py +13 -14
- meta_screening/form_validators/__init__.py +8 -0
- meta_screening/forms/__init__.py +20 -0
- meta_screening/forms/field_lists.py +16 -17
- meta_screening/forms/screening_part_one_form.py +2 -2
- meta_screening/forms/screening_part_three_form.py +5 -3
- meta_screening/forms/screening_part_two_form.py +1 -5
- meta_screening/forms/subject_refusal_form.py +0 -4
- meta_screening/forms/subject_screening_form.py +0 -4
- meta_screening/migrations/0001_initial.py +15 -15
- meta_screening/migrations/0010_auto_20191106_0828.py +5 -5
- meta_screening/migrations/0068_alter_historicalscreeningpartone_acute_condition_and_more.py +1579 -0
- meta_screening/model_mixins/__init__.py +8 -0
- meta_screening/model_mixins/eligibility_model_mixin.py +5 -3
- meta_screening/model_mixins/part_one_fields_model_mixin.py +5 -9
- meta_screening/model_mixins/part_three_fields_model_mixin.py +5 -6
- meta_screening/model_mixins/part_two_fields_model_mixin.py +18 -16
- meta_screening/models/__init__.py +9 -0
- meta_screening/models/icp_referral.py +5 -5
- meta_screening/models/signals.py +10 -11
- meta_screening/models/subject_refusal.py +1 -1
- meta_screening/models/subject_screening.py +1 -3
- meta_subject/action_items.py +13 -15
- meta_subject/admin/__init__.py +39 -0
- meta_subject/admin/birth_outcome_admin.py +4 -8
- meta_subject/admin/blood_results/__init__.py +9 -0
- meta_subject/admin/blood_results/blood_results_fbc_admin.py +1 -1
- meta_subject/admin/blood_results/blood_results_hba1c_admin.py +1 -1
- meta_subject/admin/blood_results/blood_results_ins_admin.py +1 -1
- meta_subject/admin/blood_results/blood_results_lft_admin.py +1 -1
- meta_subject/admin/blood_results/blood_results_lipids_admin.py +1 -1
- meta_subject/admin/blood_results/blood_results_rft_admin.py +3 -5
- meta_subject/admin/complications_glycemia_admin.py +1 -1
- meta_subject/admin/delivery_admin.py +7 -10
- meta_subject/admin/diabetes/__init__.py +2 -0
- meta_subject/admin/diabetes/dm_endpoint_admin.py +2 -2
- meta_subject/admin/diabetes/dm_followup_admin.py +3 -2
- meta_subject/admin/egfr_drop_notification_admin.py +1 -1
- meta_subject/admin/followup_examination_admin.py +10 -9
- meta_subject/admin/followup_vitals_admin.py +4 -5
- meta_subject/admin/glucose_admin.py +2 -4
- meta_subject/admin/glucose_fbg_admin.py +1 -3
- meta_subject/admin/health_economics/__init__.py +2 -0
- meta_subject/admin/health_economics/health_economics_simple_admin.py +1 -1
- meta_subject/admin/health_economics/health_economics_update_admin.py +1 -1
- meta_subject/admin/hepatitis_test_admin.py +1 -1
- meta_subject/admin/list_filters.py +1 -1
- meta_subject/admin/mnsi_admin.py +7 -5
- meta_subject/admin/other_arv_regimens_admin.py +3 -3
- meta_subject/admin/patient_history_admin.py +4 -4
- meta_subject/admin/physical_exam_admin.py +1 -1
- meta_subject/admin/pregnancy_update_admin.py +1 -1
- meta_subject/admin/study_medication_admin.py +8 -15
- meta_subject/admin/subject_requisition_admin.py +1 -1
- meta_subject/admin/subject_visit_admin.py +1 -1
- meta_subject/admin/subject_visit_missed_admin.py +1 -1
- meta_subject/admin/urine_dipstick_test_admin.py +1 -1
- meta_subject/admin/urine_pregnancy_admin.py +1 -1
- meta_subject/baker_recipes.py +15 -15
- meta_subject/form_validators/__init__.py +11 -0
- meta_subject/form_validators/delivery_form_validator.py +2 -3
- meta_subject/form_validators/dm_endpoint_form_validator.py +1 -1
- meta_subject/form_validators/dm_followup_form_validator.py +7 -6
- meta_subject/form_validators/glucose_form_validator.py +3 -5
- meta_subject/forms/__init__.py +41 -0
- meta_subject/forms/blood_results/__init__.py +9 -0
- meta_subject/forms/blood_results/blood_results_rft_form.py +1 -2
- meta_subject/forms/diabetes/__init__.py +2 -0
- meta_subject/forms/diabetes/dm_followup_form.py +2 -2
- meta_subject/forms/followup_vitals_form.py +3 -8
- meta_subject/forms/health_economics/__init__.py +2 -0
- meta_subject/forms/next_appointment_form.py +2 -3
- meta_subject/forms/slider_widget.py +1 -1
- meta_subject/forms/study_medication_form.py +11 -8
- meta_subject/management/commands/create_missing_refills.py +3 -3
- meta_subject/management/commands/create_missing_rx.py +1 -1
- meta_subject/management/commands/missed.py +20 -23
- meta_subject/metadata_rules/__init__.py +2 -0
- meta_subject/metadata_rules/predicates.py +25 -32
- meta_subject/migrations/0001_initial.py +61 -61
- meta_subject/migrations/0002_auto_20191021_0353.py +5 -5
- meta_subject/migrations/0012_auto_20200118_2334.py +5 -5
- meta_subject/migrations/0014_auto_20200120_1622.py +5 -5
- meta_subject/migrations/0018_coronakap_historicalcoronakap.py +5 -5
- meta_subject/migrations/0033_auto_20200516_2356.py +5 -5
- meta_subject/migrations/0038_auto_20200520_0020.py +5 -5
- meta_subject/migrations/0040_auto_20200527_2155.py +1 -1
- meta_subject/migrations/0045_auto_20200530_1801.py +1 -1
- meta_subject/migrations/0051_auto_20200617_2117.py +5 -5
- meta_subject/migrations/0063_auto_20210715_0337.py +5 -5
- meta_subject/migrations/0066_auto_20210721_0335.py +9 -9
- meta_subject/migrations/0067_auto_20210726_0340.py +5 -5
- meta_subject/migrations/0068_auto_20210728_1809.py +5 -5
- meta_subject/migrations/0072_auto_20210805_1545.py +7 -7
- meta_subject/migrations/0073_auto_20210809_0055.py +5 -5
- meta_subject/migrations/0077_auto_20210809_2323.py +3 -3
- meta_subject/migrations/0082_auto_20210823_1612.py +3 -3
- meta_subject/migrations/0083_auto_20210823_1620.py +3 -3
- meta_subject/migrations/0088_auto_20210924_0027.py +5 -5
- meta_subject/migrations/0090_auto_20210924_0424.py +5 -5
- meta_subject/migrations/0093_auto_20211117_0352.py +5 -5
- meta_subject/migrations/0095_auto_20220128_1719.py +5 -5
- meta_subject/migrations/0098_auto_20220309_2106.py +5 -5
- meta_subject/migrations/0101_auto_20220316_2147.py +13 -13
- meta_subject/migrations/0115_historicalegfrnotification_egfrnotification.py +5 -13
- meta_subject/migrations/0164_dmreferralfollowup_historicaldmreferralfollowup.py +5 -5
- meta_subject/migrations/0172_remove_historicalbloodresultsglu_action_item_and_more.py +1 -2
- meta_subject/migrations/0177_alter_bloodresultslft_alp_value_and_more.py +1 -2
- meta_subject/migrations/0178_historicalhealtheconomicsupdate_and_more.py +5 -14
- meta_subject/migrations/0186_healtheconomicsupdate_singleton_field_and_more.py +1 -2
- meta_subject/migrations/0187_dmdiagnosis_historicaldmdiagnosis_dmdxresult_and_more.py +5 -14
- meta_subject/migrations/0188_historicaldmdxresult_dmdxresult.py +5 -14
- meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py +1 -2
- meta_subject/migrations/0216_historicalnextappointment_nextappointment.py +5 -6
- meta_subject/migrations/0220_historicalbloodresultsgludummy_bloodresultsgludummy.py +5 -14
- meta_subject/migrations/0227_alter_followupvitals_waist_circumference_comment_and_more.py +97 -0
- meta_subject/migrations/0228_bloodresultshba1c_hba1c_datetime_and_more.py +9297 -0
- meta_subject/model_mixins/__init__.py +8 -0
- meta_subject/model_mixins/search_slug_model_mixin.py +1 -2
- meta_subject/model_mixins/vitals_fields_model_mixin.py +1 -1
- meta_subject/models/__init__.py +48 -0
- meta_subject/models/birth_outcomes.py +3 -3
- meta_subject/models/blood_results/__init__.py +11 -0
- meta_subject/models/delivery.py +3 -3
- meta_subject/models/diabetes/__init__.py +2 -0
- meta_subject/models/diabetes/dm_endpoint.py +4 -4
- meta_subject/models/diabetes/dm_followup.py +3 -4
- meta_subject/models/diet_and_lifestyle.py +2 -2
- meta_subject/models/followup_examination.py +11 -11
- meta_subject/models/glucose.py +4 -4
- meta_subject/models/glucose_fbg.py +2 -3
- meta_subject/models/health_economics/__init__.py +2 -0
- meta_subject/models/health_economics/health_economics.py +7 -7
- meta_subject/models/health_economics/health_economics_update.py +2 -1
- meta_subject/models/hepatitis_test.py +2 -2
- meta_subject/models/other_arv_regimens_detail.py +1 -1
- meta_subject/models/patient_history.py +5 -6
- meta_subject/models/physical_exam.py +2 -2
- meta_subject/models/pregnancy_update.py +1 -1
- meta_subject/models/signals.py +14 -12
- meta_subject/models/subject_visit.py +1 -1
- meta_subject/models/urine_dipstick_test.py +1 -1
- meta_subject/models/urine_pregnancy.py +1 -1
- meta_visit_schedule/visit_schedules/__init__.py +2 -0
- meta_visit_schedule/visit_schedules/phase_three/__init__.py +2 -0
- meta_visit_schedule/visit_schedules/phase_three/schedule.py +2 -2
- meta_visit_schedule/visit_schedules/phase_three/schedule_dm_referral.py +1 -2
- meta_visit_schedule/visit_schedules/phase_three/schedule_pregnancy.py +1 -2
- meta_ae/tests/holidays.csv +0 -15
- meta_ae/tests/tests/test_actions.py +0 -126
- meta_ae/tests/urls.py +0 -10
- meta_analytics/dataframes/glucose_endpoints/utils.py +0 -0
- meta_analytics/notebooks/anu.ipynb +0 -95
- meta_analytics/notebooks/appointment_planning.ipynb +0 -329
- meta_analytics/notebooks/arvs.ipynb +0 -103
- meta_analytics/notebooks/cleaning/__init__.py +0 -0
- meta_analytics/notebooks/cleaning/consent_v1_ext.ipynb +0 -227
- meta_analytics/notebooks/cleaning/offschedule_eos.ipynb +0 -353
- meta_analytics/notebooks/dsmc/renal_dysfunction.ipynb +0 -435
- meta_analytics/notebooks/endpoints/meta_endpoints_by_date.ipynb +0 -656
- meta_analytics/notebooks/followup_examination.ipynb +0 -141
- meta_analytics/notebooks/hba1c.ipynb +0 -136
- meta_analytics/notebooks/hiv_regimens.ipynb +0 -429
- meta_analytics/notebooks/incidence.ipynb +0 -232
- meta_analytics/notebooks/liver.ipynb +0 -389
- meta_analytics/notebooks/magreth.ipynb +0 -645
- meta_analytics/notebooks/monitoring_report.ipynb +0 -1834
- meta_analytics/notebooks/pharmacy.ipynb +0 -1061
- meta_analytics/notebooks/pharmacy_stock_202410.ipynb +0 -306
- meta_analytics/notebooks/qa.ipynb +0 -273
- meta_analytics/notebooks/steering.ipynb +0 -61
- meta_analytics/notebooks/undiagnosed/meta3_screening_consort_chart.ipynb +0 -1176
- meta_analytics/notebooks/undiagnosed/meta3_screening_undiagnosed.ipynb +0 -519
- meta_analytics/notebooks/undiagnosed/meta_screening_table2.ipynb +0 -964
- meta_analytics/notebooks/undiagnosed/screen_undiagnosed_or.ipynb +0 -296
- meta_analytics/notebooks/undiagnosed/screening.ipynb +0 -273
- meta_analytics/notebooks/undiagnosed/screening2.ipynb +0 -958
- meta_analytics/notebooks/undiagnosed/screening_undiagnosed_20241002.ipynb +0 -958
- meta_analytics/notebooks/ven.ipynb +0 -191
- meta_analytics/notebooks/vitals.ipynb +0 -263
- meta_analytics/tests/__init__.py +0 -0
- meta_analytics/tests/test_endpoints_by_date.py +0 -94
- meta_consent/tests/__init__.py +0 -0
- meta_consent/tests/holidays.csv +0 -15
- meta_consent/tests/tests/__init__.py +0 -0
- meta_consent/tests/tests/test_form_validators.py +0 -110
- meta_consent/tests/tests/test_subject_consent.py +0 -10
- meta_consent/tests/urls.py +0 -17
- meta_dashboard/tests/__init__.py +0 -0
- meta_dashboard/tests/admin.py +0 -22
- meta_dashboard/tests/holidays.csv +0 -15
- meta_dashboard/tests/tests/__init__.py +0 -0
- meta_dashboard/tests/urls.py +0 -55
- meta_edc/tests/__init__.py +0 -0
- meta_edc/tests/tests/__init__.py +0 -0
- meta_edc/tests/tests/test_endpoints.py +0 -555
- meta_edc-1.1.8.dist-info/METADATA +0 -767
- meta_edc-1.1.8.dist-info/WHEEL +0 -5
- meta_edc-1.1.8.dist-info/licenses/AUTHORS.rst +0 -8
- meta_edc-1.1.8.dist-info/top_level.txt +0 -20
- meta_labs/tests/__init__.py +0 -0
- meta_labs/tests/test_labs.py +0 -27
- meta_labs/tests/test_reportables.py +0 -70
- meta_labs/tests/urls.py +0 -4
- meta_lists/tests/__init__.py +0 -0
- meta_lists/tests/test_lists.py +0 -8
- meta_pharmacy/notebooks/pharmacy.ipynb +0 -41
- meta_prn/tests/__init__.py +0 -0
- meta_prn/tests/tests/__init__.py +0 -0
- meta_prn/tests/tests/test_actions.py +0 -97
- meta_prn/tests/tests/test_dm_referral.py +0 -203
- meta_prn/tests/tests/test_eos_events.py +0 -134
- meta_prn/tests/tests/test_manager_order.py +0 -14
- meta_prn/tests/tests/test_pregnancy_notification.py +0 -93
- meta_prn/tests/urls.py +0 -10
- meta_rando/tests/__init__.py +0 -0
- meta_rando/tests/tests/__init__.py +0 -0
- meta_rando/tests/tests/test_randomizers.py +0 -57
- meta_reports/tests/__init__.py +0 -0
- meta_reports/tests/test_reports.py +0 -35
- meta_reports/tests/test_sql_gen.py +0 -5
- meta_reports/tests/urls.py +0 -4
- meta_screening/offline_models.py +0 -3
- meta_screening/tests/__init__.py +0 -0
- meta_screening/tests/holidays.csv +0 -15
- meta_screening/tests/meta_test_case_mixin.py +0 -234
- meta_screening/tests/options.py +0 -127
- meta_screening/tests/tests/__init__.py +0 -0
- meta_screening/tests/tests/test_forms.py +0 -404
- meta_screening/tests/tests/test_screening_part_one.py +0 -108
- meta_screening/tests/tests/test_screening_part_three.py +0 -433
- meta_screening/tests/tests/test_screening_part_two.py +0 -84
- meta_sites/tests/__init__.py +0 -0
- meta_sites/tests/test_sites.py +0 -12
- meta_sites/tests/urls.py +0 -4
- meta_stats/__init__.py +0 -0
- meta_stats/incidence.py +0 -16
- meta_stats/models.py +0 -0
- meta_stats/tests/__init__.py +0 -0
- meta_stats/tests/tests/__init__.py +0 -0
- meta_stats/tests/tests/test_incidence.py +0 -10
- meta_subject/tests/__init__.py +0 -0
- meta_subject/tests/holidays.csv +0 -15
- meta_subject/tests/tests/__init__.py +0 -0
- meta_subject/tests/tests/test_egfr.py +0 -234
- meta_subject/tests/tests/test_fixes.py +0 -64
- meta_subject/tests/tests/test_followup.py +0 -52
- meta_subject/tests/tests/test_manager_order.py +0 -11
- meta_subject/tests/tests/test_medication_adherence.py +0 -79
- meta_subject/tests/tests/test_metadata_rules.py +0 -135
- meta_subject/tests/tests/test_mnsi.py +0 -341
- meta_subject/tests/tests/test_next_appointment.py +0 -231
- meta_subject/tests/tests/test_patient_history_form.py +0 -74
- meta_subject/tests/tests/test_physical_exam.py +0 -84
- meta_subject/tests/tests/test_sf12.py +0 -161
- meta_subject/tests/tests/test_study_medication.py +0 -229
- meta_subject/tests/urls.py +0 -24
- meta_visit_schedule/tests/__init__.py +0 -0
- meta_visit_schedule/tests/tests/__init__.py +0 -0
- meta_visit_schedule/tests/tests/test_schedule.py +0 -181
- meta_visit_schedule/tests/urls.py +0 -4
- tests/__init__.py +0 -0
- tests/etc/randomization_list.csv +0 -241
- tests/etc/randomization_list_phase_three.csv +0 -241
- tests/etc/user-aes-local.key +0 -0
- tests/etc/user-aes-restricted.key +0 -1
- tests/etc/user-rsa-local-private.pem +0 -27
- tests/etc/user-rsa-local-public.pem +0 -9
- tests/etc/user-rsa-restricted-private.pem +0 -27
- tests/etc/user-rsa-restricted-public.pem +0 -9
- tests/etc/user-salt-local.key +0 -0
- tests/etc/user-salt-restricted.key +0 -0
- tests/holidays.csv +0 -15
- tests/test_settings.py +0 -185
- {meta_edc-1.1.8.dist-info → meta_edc-1.1.12.dist-info}/licenses/LICENSE +0 -0
- /meta_ae/tests/__init__.py → /meta_subject/management/__init__py.py +0 -0
- /meta_ae/tests/tests/__init__.py → /meta_subject/management/commands/__init__py.py +0 -0
meta_consent/baker_recipes.py
CHANGED
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
from dateutil.relativedelta import relativedelta
|
|
2
2
|
from django.contrib.sites.models import Site
|
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3
|
-
from
|
|
4
|
-
from
|
|
3
|
+
from django.utils import timezone
|
|
4
|
+
from edc_constants.constants import NO, NULL_STRING, YES
|
|
5
5
|
from faker import Faker
|
|
6
6
|
from model_bakery.recipe import Recipe, seq
|
|
7
7
|
|
|
@@ -13,10 +13,10 @@ opts = dict(
|
|
|
13
13
|
assessment_score=YES,
|
|
14
14
|
confirm_identity=seq("12315678"),
|
|
15
15
|
consent_copy=YES,
|
|
16
|
-
consent_datetime=
|
|
16
|
+
consent_datetime=timezone.now(),
|
|
17
17
|
consent_reviewed=YES,
|
|
18
18
|
consent_signature=YES,
|
|
19
|
-
dob=
|
|
19
|
+
dob=timezone.now() - relativedelta(years=25),
|
|
20
20
|
first_name=fake.first_name,
|
|
21
21
|
gender="M",
|
|
22
22
|
identity=seq("12315678"),
|
|
@@ -26,16 +26,15 @@ opts = dict(
|
|
|
26
26
|
is_incarcerated=NO,
|
|
27
27
|
is_literate=YES,
|
|
28
28
|
last_name=fake.last_name,
|
|
29
|
-
screening_identifier=
|
|
29
|
+
screening_identifier=NULL_STRING,
|
|
30
30
|
study_questions=YES,
|
|
31
31
|
site=Site.objects.get_current(),
|
|
32
|
-
subject_identifier=
|
|
32
|
+
subject_identifier=NULL_STRING,
|
|
33
33
|
user_created="erikvw",
|
|
34
34
|
user_modified="erikvw",
|
|
35
35
|
)
|
|
36
36
|
subjectconsent = Recipe(SubjectConsent, **opts)
|
|
37
37
|
subjectconsentv1 = Recipe(SubjectConsentV1, **opts)
|
|
38
|
-
# subjectconsentv1ext = Recipe(SubjectConsentV1Ext, **opts)
|
|
39
38
|
|
|
40
39
|
subjectreconsent = Recipe(
|
|
41
40
|
SubjectReconsent,
|
|
@@ -44,7 +43,7 @@ subjectreconsent = Recipe(
|
|
|
44
43
|
assessment_score=YES,
|
|
45
44
|
study_questions=YES,
|
|
46
45
|
consent_copy=YES,
|
|
47
|
-
action_identifier=
|
|
46
|
+
action_identifier=NULL_STRING,
|
|
48
47
|
user_created="erikvw",
|
|
49
48
|
user_modified="erikvw",
|
|
50
49
|
)
|
meta_consent/forms/__init__.py
CHANGED
|
@@ -2,3 +2,10 @@ from .subject_consent_form import SubjectConsentForm
|
|
|
2
2
|
from .subject_consent_v1_ext_form import SubjectConsentV1ExtForm
|
|
3
3
|
from .subject_consent_v1_form import SubjectConsentV1Form
|
|
4
4
|
from .subject_reconsent_form import SubjectReconsentForm
|
|
5
|
+
|
|
6
|
+
__all__ = [
|
|
7
|
+
"SubjectConsentForm",
|
|
8
|
+
"SubjectConsentV1ExtForm",
|
|
9
|
+
"SubjectConsentV1Form",
|
|
10
|
+
"SubjectReconsentForm",
|
|
11
|
+
]
|
|
@@ -12,7 +12,6 @@ from ..models import SubjectConsentV1Ext
|
|
|
12
12
|
class SubjectConsentV1ExtForm(
|
|
13
13
|
SiteModelFormMixin, ReviewFieldsModelFormMixin, FormValidatorMixin, forms.ModelForm
|
|
14
14
|
):
|
|
15
|
-
|
|
16
15
|
def clean(self):
|
|
17
16
|
cleaned_data = super().clean()
|
|
18
17
|
start_datetime = to_local(consent_v1_ext.start)
|
|
@@ -29,14 +28,14 @@ class SubjectConsentV1ExtForm(
|
|
|
29
28
|
raise forms.ValidationError({"agrees_to_extension": "Invalid option"})
|
|
30
29
|
return cleaned_data
|
|
31
30
|
|
|
32
|
-
widgets = {
|
|
31
|
+
widgets = { # noqa: RUF012
|
|
33
32
|
"subject_identifier": forms.TextInput(attrs={"readonly": "readonly"}),
|
|
34
33
|
}
|
|
35
34
|
|
|
36
35
|
class Meta:
|
|
37
36
|
model = SubjectConsentV1Ext
|
|
38
37
|
fields = "__all__"
|
|
39
|
-
labels = {
|
|
38
|
+
labels = { # noqa: RUF012
|
|
40
39
|
"study_questions": (
|
|
41
40
|
"I have answered all questions the participant had about the "
|
|
42
41
|
"follow-up extension"
|
|
@@ -23,15 +23,15 @@ class SubjectReconsentForm(
|
|
|
23
23
|
subject_identifier=cleaned_data.get("subject_identifier"),
|
|
24
24
|
identity=cleaned_data.get("identity"),
|
|
25
25
|
)
|
|
26
|
-
except ObjectDoesNotExist:
|
|
27
|
-
raise forms.ValidationError({"identity": "Identity number does not match."})
|
|
26
|
+
except ObjectDoesNotExist as e:
|
|
27
|
+
raise forms.ValidationError({"identity": "Identity number does not match."}) from e
|
|
28
28
|
return cleaned_data
|
|
29
29
|
|
|
30
30
|
class Meta:
|
|
31
31
|
model = SubjectReconsent
|
|
32
32
|
fields = "__all__"
|
|
33
|
-
help_text = {"action_identifier": "(read-only)", "subject_identifier": "(read-only)"}
|
|
34
|
-
widgets = {
|
|
33
|
+
help_text = {"action_identifier": "(read-only)", "subject_identifier": "(read-only)"} # noqa: RUF012
|
|
34
|
+
widgets = { # noqa: RUF012
|
|
35
35
|
"action_identifier": forms.TextInput(attrs={"readonly": "readonly"}),
|
|
36
36
|
"subject_identifier": forms.TextInput(attrs={"readonly": "readonly"}),
|
|
37
37
|
}
|
|
@@ -1,3 +1,5 @@
|
|
|
1
|
+
import sys
|
|
2
|
+
|
|
1
3
|
from django.core.management.base import BaseCommand, CommandError
|
|
2
4
|
from edc_pharmacy.exceptions import PrescriptionAlreadyExists
|
|
3
5
|
from edc_pharmacy.models import Medication, Rx
|
|
@@ -12,7 +14,7 @@ from meta_pharmacy.constants import METFORMIN
|
|
|
12
14
|
class Command(BaseCommand):
|
|
13
15
|
help = "Create missing prescriptions"
|
|
14
16
|
|
|
15
|
-
def handle(self, *args, **options):
|
|
17
|
+
def handle(self, *args, **options): # noqa: ARG002
|
|
16
18
|
medication = Medication.objects.get(name=METFORMIN)
|
|
17
19
|
subject_identifiers = Rx.objects.values_list("subject_identifier", flat=True).all()
|
|
18
20
|
subject_consents_wo_rx = SubjectConsent.objects.exclude(
|
|
@@ -31,4 +33,4 @@ class Command(BaseCommand):
|
|
|
31
33
|
except PrescriptionAlreadyExists:
|
|
32
34
|
pass
|
|
33
35
|
except CommandError as e:
|
|
34
|
-
|
|
36
|
+
sys.stdout.write(f"Failed for {instance.subject_identifier}. Got {e}\n")
|
|
@@ -8,7 +8,7 @@ import django.db.models.deletion
|
|
|
8
8
|
import django_audit_fields.fields.hostname_modification_field
|
|
9
9
|
import django_audit_fields.fields.userfield
|
|
10
10
|
import django_audit_fields.fields.uuid_auto_field
|
|
11
|
-
import
|
|
11
|
+
import django.utils.timezone
|
|
12
12
|
import django_crypto_fields.fields.encrypted_char_field
|
|
13
13
|
import django_crypto_fields.fields.encrypted_text_field
|
|
14
14
|
import django_crypto_fields.fields.firstname_field
|
|
@@ -55,14 +55,14 @@ class Migration(migrations.Migration):
|
|
|
55
55
|
"created",
|
|
56
56
|
models.DateTimeField(
|
|
57
57
|
blank=True,
|
|
58
|
-
default=
|
|
58
|
+
default=django.utils.timezone.now,
|
|
59
59
|
),
|
|
60
60
|
),
|
|
61
61
|
(
|
|
62
62
|
"modified",
|
|
63
63
|
models.DateTimeField(
|
|
64
64
|
blank=True,
|
|
65
|
-
default=
|
|
65
|
+
default=django.utils.timezone.now,
|
|
66
66
|
),
|
|
67
67
|
),
|
|
68
68
|
(
|
|
@@ -288,14 +288,14 @@ class Migration(migrations.Migration):
|
|
|
288
288
|
"created",
|
|
289
289
|
models.DateTimeField(
|
|
290
290
|
blank=True,
|
|
291
|
-
default=
|
|
291
|
+
default=django.utils.timezone.now,
|
|
292
292
|
),
|
|
293
293
|
),
|
|
294
294
|
(
|
|
295
295
|
"modified",
|
|
296
296
|
models.DateTimeField(
|
|
297
297
|
blank=True,
|
|
298
|
-
default=
|
|
298
|
+
default=django.utils.timezone.now,
|
|
299
299
|
),
|
|
300
300
|
),
|
|
301
301
|
(
|
|
@@ -773,14 +773,14 @@ class Migration(migrations.Migration):
|
|
|
773
773
|
"created",
|
|
774
774
|
models.DateTimeField(
|
|
775
775
|
blank=True,
|
|
776
|
-
default=
|
|
776
|
+
default=django.utils.timezone.now,
|
|
777
777
|
),
|
|
778
778
|
),
|
|
779
779
|
(
|
|
780
780
|
"modified",
|
|
781
781
|
models.DateTimeField(
|
|
782
782
|
blank=True,
|
|
783
|
-
default=
|
|
783
|
+
default=django.utils.timezone.now,
|
|
784
784
|
),
|
|
785
785
|
),
|
|
786
786
|
(
|
|
@@ -1043,14 +1043,14 @@ class Migration(migrations.Migration):
|
|
|
1043
1043
|
"created",
|
|
1044
1044
|
models.DateTimeField(
|
|
1045
1045
|
blank=True,
|
|
1046
|
-
default=
|
|
1046
|
+
default=django.utils.timezone.now,
|
|
1047
1047
|
),
|
|
1048
1048
|
),
|
|
1049
1049
|
(
|
|
1050
1050
|
"modified",
|
|
1051
1051
|
models.DateTimeField(
|
|
1052
1052
|
blank=True,
|
|
1053
|
-
default=
|
|
1053
|
+
default=django.utils.timezone.now,
|
|
1054
1054
|
),
|
|
1055
1055
|
),
|
|
1056
1056
|
(
|
|
@@ -8,7 +8,7 @@ import django.db.models.deletion
|
|
|
8
8
|
import django_audit_fields.fields.hostname_modification_field
|
|
9
9
|
import django_audit_fields.fields.userfield
|
|
10
10
|
import django_audit_fields.fields.uuid_auto_field
|
|
11
|
-
import
|
|
11
|
+
import django.utils.timezone
|
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12
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class Migration(migrations.Migration):
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dependencies = [
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("sites", "0002_alter_domain_unique"),
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migrations.swappable_dependency(settings.AUTH_USER_MODEL),
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@@ -48,15 +47,11 @@ class Migration(migrations.Migration):
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),
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(
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"created",
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models.DateTimeField(
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),
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models.DateTimeField(blank=True, default=django.utils.timezone.now),
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),
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(
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"modified",
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),
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models.DateTimeField(blank=True, default=django.utils.timezone.now),
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),
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(
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@@ -5,7 +5,7 @@ import django.db.models.deletion
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import django_audit_fields.fields.uuid_auto_field
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import
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+
import django.utils.timezone
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import django_crypto_fields.fields.encrypted_text_field
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import edc_action_item.managers
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@@ -18,7 +18,6 @@ from django.db import migrations, models
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class Migration(migrations.Migration):
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dependencies = [
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("edc_action_item", "0037_remove_actionitem_reference_model_and_more"),
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("meta_consent", "0025_alter_historicalsubjectconsent_first_name_and_more"),
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@@ -43,15 +42,11 @@ class Migration(migrations.Migration):
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),
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(
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"created",
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models.DateTimeField(
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blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
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),
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models.DateTimeField(blank=True, default=django.utils.timezone.now),
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),
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(
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"modified",
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models.DateTimeField(
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blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
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),
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+
models.DateTimeField(blank=True, default=django.utils.timezone.now),
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),
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(
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"user_created",
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@@ -309,15 +304,11 @@ class Migration(migrations.Migration):
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(
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"created",
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),
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models.DateTimeField(blank=True, default=django.utils.timezone.now),
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),
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(
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models.DateTimeField(
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blank=True, default=django_audit_fields.models.audit_model_mixin.utcnow
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),
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models.DateTimeField(blank=True, default=django.utils.timezone.now),
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),
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(
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"user_created",
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