meta-edc 1.1.8__py3-none-any.whl → 1.1.12__py3-none-any.whl
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- meta_ae/action_items.py +2 -1
- meta_ae/admin/__init__.py +11 -0
- meta_ae/admin/ae_susar_admin.py +1 -1
- meta_ae/admin/death_report_admin.py +1 -1
- meta_ae/admin/modeladmin_mixins.py +10 -12
- meta_ae/baker_recipes.py +3 -3
- meta_ae/forms/__init__.py +13 -0
- meta_ae/forms/modelform_mixins.py +2 -2
- meta_ae/migrations/0001_initial.py +27 -27
- meta_ae/migrations/0006_aelocalreview_aesponsorreview.py +5 -5
- meta_ae/migrations/0022_historicalhospitalization_hospitalization.py +5 -13
- meta_ae/migrations/0023_alter_aefollowup_action_identifier_and_more.py +2017 -0
- meta_ae/model_mixins/__init__.py +2 -0
- meta_ae/model_mixins/ae_review_model_mixin.py +6 -6
- meta_ae/model_mixins/death_report_model_mixin.py +3 -3
- meta_ae/models/__init__.py +13 -0
- meta_ae/models/hospitalization.py +3 -3
- meta_ae/pdf_reports/__init__.py +2 -0
- meta_analytics/.DS_Store +0 -0
- meta_analytics/dataframes/__init__.py +24 -0
- meta_analytics/dataframes/get_eos_df.py +1 -2
- meta_analytics/dataframes/get_glucose_df.py +6 -7
- meta_analytics/dataframes/get_glucose_fbg_df.py +2 -3
- meta_analytics/dataframes/get_glucose_fbg_ogtt_df.py +1 -2
- meta_analytics/dataframes/get_last_imp_visits_df.py +5 -6
- meta_analytics/dataframes/glucose_endpoints/__init__.py +2 -0
- meta_analytics/dataframes/glucose_endpoints/endpoint_by_date.py +13 -20
- meta_analytics/dataframes/glucose_endpoints/glucose_endpoints_by_date.py +9 -10
- meta_analytics/dataframes/screening/__init__.py +2 -0
- meta_analytics/dataframes/screening/get_glucose_tested_only_df.py +1 -2
- meta_analytics/dataframes/screening/get_screening_df.py +6 -10
- meta_analytics/dataframes/utils.py +3 -8
- meta_analytics/get_tables.py +1 -2
- meta_analytics/tables/__init__.py +2 -0
- meta_consent/action_items.py +2 -1
- meta_consent/admin/__init__.py +6 -0
- meta_consent/admin/actions/__init__.py +2 -0
- meta_consent/admin/actions/create_missing_prescriptions.py +1 -1
- meta_consent/admin/list_filters.py +2 -2
- meta_consent/admin/modeladmin_mixins.py +3 -4
- meta_consent/admin/subject_consent_v1_ext_admin.py +2 -2
- meta_consent/baker_recipes.py +7 -8
- meta_consent/form_validators/__init__.py +2 -0
- meta_consent/forms/__init__.py +7 -0
- meta_consent/forms/subject_consent_v1_ext_form.py +2 -3
- meta_consent/forms/subject_reconsent_form.py +4 -4
- meta_consent/management/commands/create_missing_prescriptions.py +4 -2
- meta_consent/migrations/0001_initial.py +9 -9
- meta_consent/migrations/0024_historicalsubjectconsentv1.py +3 -8
- meta_consent/migrations/0026_historicalsubjectconsentv1ext_subjectconsentv1ext.py +5 -14
- meta_consent/migrations/0032_alter_historicalsubjectconsent_device_created_and_more.py +678 -0
- meta_consent/models/__init__.py +9 -0
- meta_consent/models/model_mixins.py +1 -2
- meta_consent/models/signals.py +9 -10
- meta_consent/models/subject_consent.py +1 -1
- meta_consent/models/subject_reconsent.py +3 -3
- meta_dashboard/patterns.py +1 -1
- meta_dashboard/templatetags/meta_dashboard_extras.py +1 -1
- meta_dashboard/view_utils/__init__.py +7 -0
- meta_dashboard/view_utils/subject_screening_button.py +9 -16
- meta_dashboard/views/__init__.py +8 -0
- meta_dashboard/views/ae/__init__.py +2 -0
- meta_dashboard/views/ae/ae_listboard_view.py +1 -1
- meta_dashboard/views/ae/death_report_listboard_view.py +1 -1
- meta_dashboard/views/screening/__init__.py +2 -0
- meta_dashboard/views/subject/__init__.py +2 -0
- meta_dashboard/views/subject/dashboard/__init__.py +2 -0
- meta_dashboard/views/subject/dashboard/dashboard_view.py +1 -1
- meta_dashboard/views/subject/listboard/__init__.py +2 -0
- meta_edc/__init__.py +5 -9
- meta_edc/celery.py +1 -1
- meta_edc/celery_live.py +1 -1
- meta_edc/celery_uat.py +1 -1
- meta_edc/management/commands/update_forms_reference.py +10 -12
- meta_edc/settings/debug.py +5 -4
- meta_edc/settings/defaults.py +18 -3
- meta_edc/settings/live.py +3 -1
- meta_edc/settings/logging.py +9 -4
- meta_edc/settings/minimal.py +4 -5
- meta_edc/settings/uat.py +3 -1
- meta_edc/views/__init__.py +2 -0
- meta_edc-1.1.12.dist-info/METADATA +174 -0
- {meta_edc-1.1.8.dist-info → meta_edc-1.1.12.dist-info}/RECORD +413 -526
- meta_edc-1.1.12.dist-info/WHEEL +4 -0
- meta_lists/migrations/0020_alter_abnormalfootappearanceobservations_extra_value_and_more.py +404 -0
- meta_pharmacy/admin/__init__.py +5 -0
- meta_pharmacy/admin/substitutions_admin.py +2 -2
- meta_pharmacy/forms/__init__.py +2 -0
- meta_pharmacy/forms/substitutions_form.py +6 -4
- meta_pharmacy/labels/__init__.py +4 -2
- meta_pharmacy/labels/draw_label_for_subject_with_barcode.py +1 -2
- meta_pharmacy/labels/draw_label_with_test_data.py +2 -2
- meta_pharmacy/labels/label_data.py +1 -2
- meta_pharmacy/labels/print_sheets.py +4 -6
- meta_pharmacy/migrations/0002_initial.py +7 -20
- meta_pharmacy/migrations/0003_auto_20240909_2335.py +3 -2
- meta_pharmacy/migrations/0006_lotnumber_label.py +5 -14
- meta_pharmacy/migrations/0008_remove_lotnumber_medication_and_more.py +5 -6
- meta_pharmacy/migrations/0010_alter_historicallabeldata_device_created_and_more.py +382 -0
- meta_pharmacy/models/__init__.py +7 -0
- meta_pharmacy/models/label_data.py +4 -5
- meta_pharmacy/models/substitutions.py +3 -3
- meta_pharmacy/prepare_meta_pharmacy.py +1 -1
- meta_pharmacy/utils/__init__.py +2 -0
- meta_pharmacy/utils/update_initial_pharmacy_data.py +1 -1
- meta_prn/admin/__init__.py +16 -0
- meta_prn/admin/dm_referral_admin.py +2 -1
- meta_prn/admin/end_of_study_admin.py +6 -7
- meta_prn/admin/loss_to_followup_admin.py +3 -2
- meta_prn/admin/off_study_medication_admin.py +5 -6
- meta_prn/admin/offschedule_admin.py +5 -6
- meta_prn/admin/offschedule_dm_referral_admin.py +6 -6
- meta_prn/admin/offschedule_postnatal_admin.py +7 -7
- meta_prn/admin/offschedule_pregnancy_admin.py +8 -7
- meta_prn/admin/onschedule_admin.py +7 -8
- meta_prn/admin/onschedule_dm_referral_admin.py +6 -7
- meta_prn/admin/pregnancy_notification_admin.py +5 -6
- meta_prn/admin/protocol_incident_admin.py +1 -1
- meta_prn/admin/subject_transfer_admin.py +1 -1
- meta_prn/baker_recipes.py +4 -4
- meta_prn/form_validators/__init__.py +5 -0
- meta_prn/form_validators/end_of_study.py +2 -2
- meta_prn/forms/__init__.py +13 -0
- meta_prn/migrations/0001_initial.py +25 -25
- meta_prn/migrations/0017_auto_20220307_1929.py +5 -5
- meta_prn/migrations/0018_auto_20220309_2106.py +9 -9
- meta_prn/migrations/0021_auto_20220316_2147.py +13 -13
- meta_prn/migrations/0022_auto_20220318_0133.py +9 -9
- meta_prn/migrations/0032_historicalegfrnotification_egfrnotification.py +5 -13
- meta_prn/migrations/0038_alter_endofstudy_delivery_date_and_more.py +5 -13
- meta_prn/migrations/0041_endofstudy_transfer_date_and_more.py +5 -13
- meta_prn/migrations/0057_historicalonscheduledmreferral_and_more.py +13 -38
- meta_prn/migrations/0067_alter_offschedule_managers_and_more.py +2557 -0
- meta_prn/models/__init__.py +20 -0
- meta_prn/models/offschedule.py +4 -4
- meta_prn/models/protocol_incident.py +1 -1
- meta_prn/models/subject_transfer.py +8 -0
- meta_rando/migrations/0001_initial.py +5 -5
- meta_rando/migrations/0006_alter_historicalrandomizationlist_allocated_user_and_more.py +130 -0
- meta_reports/__init__.py +2 -0
- meta_reports/admin/__init__.py +16 -0
- meta_reports/admin/dbviews/__init__.py +13 -0
- meta_reports/admin/dbviews/glucose_summary_admin.py +6 -6
- meta_reports/admin/dbviews/imp_substitutions_admin.py +12 -11
- meta_reports/admin/dbviews/missing_screening_ogtt_admin/__init__.py +5 -0
- meta_reports/admin/dbviews/missing_screening_ogtt_admin/note_model_admin.py +27 -3
- meta_reports/admin/dbviews/missing_screening_ogtt_admin/unmanaged_model_admin.py +6 -6
- meta_reports/admin/dbviews/on_study_missing_lab_values_admin/__init__.py +2 -0
- meta_reports/admin/dbviews/on_study_missing_lab_values_admin/unmanaged_model_admin.py +0 -3
- meta_reports/admin/dbviews/on_study_missing_values_admin/__init__.py +2 -0
- meta_reports/admin/dbviews/patient_history_missing_baseline_cd4_admin.py +8 -8
- meta_reports/admin/dbviews/unattended_three_in_row2_admin.py +6 -6
- meta_reports/admin/dbviews/unattended_three_in_row_admin.py +5 -5
- meta_reports/admin/dbviews/unattended_two_in_row_admin.py +5 -5
- meta_reports/admin/endpoints_admin.py +1 -1
- meta_reports/admin/last_imp_refill_admin.py +9 -9
- meta_reports/admin/list_filters.py +2 -2
- meta_reports/admin/modeladmin_mixins.py +9 -16
- meta_reports/death_report.py +1 -1
- meta_reports/forms/__init__.py +2 -0
- meta_reports/forms/missing_ogtt_note_form.py +2 -3
- meta_reports/management/commands/generate_endpoints.py +5 -4
- meta_reports/migrations/0035_historicalmissingogttnote_missingogttnote.py +5 -14
- meta_reports/migrations/0059_alter_endpoints_created_and_more.py +161 -0
- meta_reports/models/__init__.py +17 -0
- meta_reports/models/dbviews/__init__.py +14 -0
- meta_reports/models/dbviews/glucose_summary/__init__.py +2 -0
- meta_reports/models/dbviews/glucose_summary/unmanaged_model.py +4 -5
- meta_reports/models/dbviews/imp_substitutions/__init__.py +2 -0
- meta_reports/models/dbviews/imp_substitutions/view_definition.py +1 -1
- meta_reports/models/dbviews/missing_screening_ogtt/__init__.py +2 -0
- meta_reports/models/dbviews/missing_screening_ogtt/note_model.py +1 -1
- meta_reports/models/dbviews/missing_screening_ogtt/unmanaged_model.py +4 -3
- meta_reports/models/dbviews/on_study_missing_lab_values/__init__.py +2 -0
- meta_reports/models/dbviews/on_study_missing_lab_values/qa_cases.py +13 -11
- meta_reports/models/dbviews/on_study_missing_values/__init__.py +2 -0
- meta_reports/models/dbviews/on_study_missing_values/qa_cases.py +18 -0
- meta_reports/models/dbviews/patient_history_missing_baseline_cd4/__init__.py +2 -0
- meta_reports/models/dbviews/unattended_three_in_row/__init__.py +2 -0
- meta_reports/models/dbviews/unattended_three_in_row2/__init__.py +2 -0
- meta_reports/models/dbviews/unattended_two_in_row/__init__.py +2 -0
- meta_reports/models/endpoints.py +4 -4
- meta_reports/models/last_imp_refill.py +2 -3
- meta_reports/pdf_report.py +2 -2
- meta_reports/tasks.py +1 -1
- meta_screening/admin/__init__.py +8 -0
- meta_screening/admin/fieldsets.py +13 -14
- meta_screening/admin/list_filters.py +6 -4
- meta_screening/admin/screening_part_one_admin.py +1 -2
- meta_screening/admin/screening_part_three_admin.py +2 -3
- meta_screening/admin/screening_part_two_admin.py +7 -10
- meta_screening/admin/subject_refusal_admin.py +5 -3
- meta_screening/admin/subject_screening_admin.py +4 -4
- meta_screening/baker_recipes.py +9 -9
- meta_screening/eligibility/__init__.py +9 -0
- meta_screening/eligibility/eligibility.py +7 -7
- meta_screening/eligibility/eligibility_part_three/__init__.py +2 -0
- meta_screening/eligibility/eligibility_part_three/base_eligibility_part_three.py +8 -8
- meta_screening/eligibility/eligibility_part_three/eligibility_part_three_phase_three.py +13 -14
- meta_screening/form_validators/__init__.py +8 -0
- meta_screening/forms/__init__.py +20 -0
- meta_screening/forms/field_lists.py +16 -17
- meta_screening/forms/screening_part_one_form.py +2 -2
- meta_screening/forms/screening_part_three_form.py +5 -3
- meta_screening/forms/screening_part_two_form.py +1 -5
- meta_screening/forms/subject_refusal_form.py +0 -4
- meta_screening/forms/subject_screening_form.py +0 -4
- meta_screening/migrations/0001_initial.py +15 -15
- meta_screening/migrations/0010_auto_20191106_0828.py +5 -5
- meta_screening/migrations/0068_alter_historicalscreeningpartone_acute_condition_and_more.py +1579 -0
- meta_screening/model_mixins/__init__.py +8 -0
- meta_screening/model_mixins/eligibility_model_mixin.py +5 -3
- meta_screening/model_mixins/part_one_fields_model_mixin.py +5 -9
- meta_screening/model_mixins/part_three_fields_model_mixin.py +5 -6
- meta_screening/model_mixins/part_two_fields_model_mixin.py +18 -16
- meta_screening/models/__init__.py +9 -0
- meta_screening/models/icp_referral.py +5 -5
- meta_screening/models/signals.py +10 -11
- meta_screening/models/subject_refusal.py +1 -1
- meta_screening/models/subject_screening.py +1 -3
- meta_subject/action_items.py +13 -15
- meta_subject/admin/__init__.py +39 -0
- meta_subject/admin/birth_outcome_admin.py +4 -8
- meta_subject/admin/blood_results/__init__.py +9 -0
- meta_subject/admin/blood_results/blood_results_fbc_admin.py +1 -1
- meta_subject/admin/blood_results/blood_results_hba1c_admin.py +1 -1
- meta_subject/admin/blood_results/blood_results_ins_admin.py +1 -1
- meta_subject/admin/blood_results/blood_results_lft_admin.py +1 -1
- meta_subject/admin/blood_results/blood_results_lipids_admin.py +1 -1
- meta_subject/admin/blood_results/blood_results_rft_admin.py +3 -5
- meta_subject/admin/complications_glycemia_admin.py +1 -1
- meta_subject/admin/delivery_admin.py +7 -10
- meta_subject/admin/diabetes/__init__.py +2 -0
- meta_subject/admin/diabetes/dm_endpoint_admin.py +2 -2
- meta_subject/admin/diabetes/dm_followup_admin.py +3 -2
- meta_subject/admin/egfr_drop_notification_admin.py +1 -1
- meta_subject/admin/followup_examination_admin.py +10 -9
- meta_subject/admin/followup_vitals_admin.py +4 -5
- meta_subject/admin/glucose_admin.py +2 -4
- meta_subject/admin/glucose_fbg_admin.py +1 -3
- meta_subject/admin/health_economics/__init__.py +2 -0
- meta_subject/admin/health_economics/health_economics_simple_admin.py +1 -1
- meta_subject/admin/health_economics/health_economics_update_admin.py +1 -1
- meta_subject/admin/hepatitis_test_admin.py +1 -1
- meta_subject/admin/list_filters.py +1 -1
- meta_subject/admin/mnsi_admin.py +7 -5
- meta_subject/admin/other_arv_regimens_admin.py +3 -3
- meta_subject/admin/patient_history_admin.py +4 -4
- meta_subject/admin/physical_exam_admin.py +1 -1
- meta_subject/admin/pregnancy_update_admin.py +1 -1
- meta_subject/admin/study_medication_admin.py +8 -15
- meta_subject/admin/subject_requisition_admin.py +1 -1
- meta_subject/admin/subject_visit_admin.py +1 -1
- meta_subject/admin/subject_visit_missed_admin.py +1 -1
- meta_subject/admin/urine_dipstick_test_admin.py +1 -1
- meta_subject/admin/urine_pregnancy_admin.py +1 -1
- meta_subject/baker_recipes.py +15 -15
- meta_subject/form_validators/__init__.py +11 -0
- meta_subject/form_validators/delivery_form_validator.py +2 -3
- meta_subject/form_validators/dm_endpoint_form_validator.py +1 -1
- meta_subject/form_validators/dm_followup_form_validator.py +7 -6
- meta_subject/form_validators/glucose_form_validator.py +3 -5
- meta_subject/forms/__init__.py +41 -0
- meta_subject/forms/blood_results/__init__.py +9 -0
- meta_subject/forms/blood_results/blood_results_rft_form.py +1 -2
- meta_subject/forms/diabetes/__init__.py +2 -0
- meta_subject/forms/diabetes/dm_followup_form.py +2 -2
- meta_subject/forms/followup_vitals_form.py +3 -8
- meta_subject/forms/health_economics/__init__.py +2 -0
- meta_subject/forms/next_appointment_form.py +2 -3
- meta_subject/forms/slider_widget.py +1 -1
- meta_subject/forms/study_medication_form.py +11 -8
- meta_subject/management/commands/create_missing_refills.py +3 -3
- meta_subject/management/commands/create_missing_rx.py +1 -1
- meta_subject/management/commands/missed.py +20 -23
- meta_subject/metadata_rules/__init__.py +2 -0
- meta_subject/metadata_rules/predicates.py +25 -32
- meta_subject/migrations/0001_initial.py +61 -61
- meta_subject/migrations/0002_auto_20191021_0353.py +5 -5
- meta_subject/migrations/0012_auto_20200118_2334.py +5 -5
- meta_subject/migrations/0014_auto_20200120_1622.py +5 -5
- meta_subject/migrations/0018_coronakap_historicalcoronakap.py +5 -5
- meta_subject/migrations/0033_auto_20200516_2356.py +5 -5
- meta_subject/migrations/0038_auto_20200520_0020.py +5 -5
- meta_subject/migrations/0040_auto_20200527_2155.py +1 -1
- meta_subject/migrations/0045_auto_20200530_1801.py +1 -1
- meta_subject/migrations/0051_auto_20200617_2117.py +5 -5
- meta_subject/migrations/0063_auto_20210715_0337.py +5 -5
- meta_subject/migrations/0066_auto_20210721_0335.py +9 -9
- meta_subject/migrations/0067_auto_20210726_0340.py +5 -5
- meta_subject/migrations/0068_auto_20210728_1809.py +5 -5
- meta_subject/migrations/0072_auto_20210805_1545.py +7 -7
- meta_subject/migrations/0073_auto_20210809_0055.py +5 -5
- meta_subject/migrations/0077_auto_20210809_2323.py +3 -3
- meta_subject/migrations/0082_auto_20210823_1612.py +3 -3
- meta_subject/migrations/0083_auto_20210823_1620.py +3 -3
- meta_subject/migrations/0088_auto_20210924_0027.py +5 -5
- meta_subject/migrations/0090_auto_20210924_0424.py +5 -5
- meta_subject/migrations/0093_auto_20211117_0352.py +5 -5
- meta_subject/migrations/0095_auto_20220128_1719.py +5 -5
- meta_subject/migrations/0098_auto_20220309_2106.py +5 -5
- meta_subject/migrations/0101_auto_20220316_2147.py +13 -13
- meta_subject/migrations/0115_historicalegfrnotification_egfrnotification.py +5 -13
- meta_subject/migrations/0164_dmreferralfollowup_historicaldmreferralfollowup.py +5 -5
- meta_subject/migrations/0172_remove_historicalbloodresultsglu_action_item_and_more.py +1 -2
- meta_subject/migrations/0177_alter_bloodresultslft_alp_value_and_more.py +1 -2
- meta_subject/migrations/0178_historicalhealtheconomicsupdate_and_more.py +5 -14
- meta_subject/migrations/0186_healtheconomicsupdate_singleton_field_and_more.py +1 -2
- meta_subject/migrations/0187_dmdiagnosis_historicaldmdiagnosis_dmdxresult_and_more.py +5 -14
- meta_subject/migrations/0188_historicaldmdxresult_dmdxresult.py +5 -14
- meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py +1 -2
- meta_subject/migrations/0216_historicalnextappointment_nextappointment.py +5 -6
- meta_subject/migrations/0220_historicalbloodresultsgludummy_bloodresultsgludummy.py +5 -14
- meta_subject/migrations/0227_alter_followupvitals_waist_circumference_comment_and_more.py +97 -0
- meta_subject/migrations/0228_bloodresultshba1c_hba1c_datetime_and_more.py +9297 -0
- meta_subject/model_mixins/__init__.py +8 -0
- meta_subject/model_mixins/search_slug_model_mixin.py +1 -2
- meta_subject/model_mixins/vitals_fields_model_mixin.py +1 -1
- meta_subject/models/__init__.py +48 -0
- meta_subject/models/birth_outcomes.py +3 -3
- meta_subject/models/blood_results/__init__.py +11 -0
- meta_subject/models/delivery.py +3 -3
- meta_subject/models/diabetes/__init__.py +2 -0
- meta_subject/models/diabetes/dm_endpoint.py +4 -4
- meta_subject/models/diabetes/dm_followup.py +3 -4
- meta_subject/models/diet_and_lifestyle.py +2 -2
- meta_subject/models/followup_examination.py +11 -11
- meta_subject/models/glucose.py +4 -4
- meta_subject/models/glucose_fbg.py +2 -3
- meta_subject/models/health_economics/__init__.py +2 -0
- meta_subject/models/health_economics/health_economics.py +7 -7
- meta_subject/models/health_economics/health_economics_update.py +2 -1
- meta_subject/models/hepatitis_test.py +2 -2
- meta_subject/models/other_arv_regimens_detail.py +1 -1
- meta_subject/models/patient_history.py +5 -6
- meta_subject/models/physical_exam.py +2 -2
- meta_subject/models/pregnancy_update.py +1 -1
- meta_subject/models/signals.py +14 -12
- meta_subject/models/subject_visit.py +1 -1
- meta_subject/models/urine_dipstick_test.py +1 -1
- meta_subject/models/urine_pregnancy.py +1 -1
- meta_visit_schedule/visit_schedules/__init__.py +2 -0
- meta_visit_schedule/visit_schedules/phase_three/__init__.py +2 -0
- meta_visit_schedule/visit_schedules/phase_three/schedule.py +2 -2
- meta_visit_schedule/visit_schedules/phase_three/schedule_dm_referral.py +1 -2
- meta_visit_schedule/visit_schedules/phase_three/schedule_pregnancy.py +1 -2
- meta_ae/tests/holidays.csv +0 -15
- meta_ae/tests/tests/test_actions.py +0 -126
- meta_ae/tests/urls.py +0 -10
- meta_analytics/dataframes/glucose_endpoints/utils.py +0 -0
- meta_analytics/notebooks/anu.ipynb +0 -95
- meta_analytics/notebooks/appointment_planning.ipynb +0 -329
- meta_analytics/notebooks/arvs.ipynb +0 -103
- meta_analytics/notebooks/cleaning/__init__.py +0 -0
- meta_analytics/notebooks/cleaning/consent_v1_ext.ipynb +0 -227
- meta_analytics/notebooks/cleaning/offschedule_eos.ipynb +0 -353
- meta_analytics/notebooks/dsmc/renal_dysfunction.ipynb +0 -435
- meta_analytics/notebooks/endpoints/meta_endpoints_by_date.ipynb +0 -656
- meta_analytics/notebooks/followup_examination.ipynb +0 -141
- meta_analytics/notebooks/hba1c.ipynb +0 -136
- meta_analytics/notebooks/hiv_regimens.ipynb +0 -429
- meta_analytics/notebooks/incidence.ipynb +0 -232
- meta_analytics/notebooks/liver.ipynb +0 -389
- meta_analytics/notebooks/magreth.ipynb +0 -645
- meta_analytics/notebooks/monitoring_report.ipynb +0 -1834
- meta_analytics/notebooks/pharmacy.ipynb +0 -1061
- meta_analytics/notebooks/pharmacy_stock_202410.ipynb +0 -306
- meta_analytics/notebooks/qa.ipynb +0 -273
- meta_analytics/notebooks/steering.ipynb +0 -61
- meta_analytics/notebooks/undiagnosed/meta3_screening_consort_chart.ipynb +0 -1176
- meta_analytics/notebooks/undiagnosed/meta3_screening_undiagnosed.ipynb +0 -519
- meta_analytics/notebooks/undiagnosed/meta_screening_table2.ipynb +0 -964
- meta_analytics/notebooks/undiagnosed/screen_undiagnosed_or.ipynb +0 -296
- meta_analytics/notebooks/undiagnosed/screening.ipynb +0 -273
- meta_analytics/notebooks/undiagnosed/screening2.ipynb +0 -958
- meta_analytics/notebooks/undiagnosed/screening_undiagnosed_20241002.ipynb +0 -958
- meta_analytics/notebooks/ven.ipynb +0 -191
- meta_analytics/notebooks/vitals.ipynb +0 -263
- meta_analytics/tests/__init__.py +0 -0
- meta_analytics/tests/test_endpoints_by_date.py +0 -94
- meta_consent/tests/__init__.py +0 -0
- meta_consent/tests/holidays.csv +0 -15
- meta_consent/tests/tests/__init__.py +0 -0
- meta_consent/tests/tests/test_form_validators.py +0 -110
- meta_consent/tests/tests/test_subject_consent.py +0 -10
- meta_consent/tests/urls.py +0 -17
- meta_dashboard/tests/__init__.py +0 -0
- meta_dashboard/tests/admin.py +0 -22
- meta_dashboard/tests/holidays.csv +0 -15
- meta_dashboard/tests/tests/__init__.py +0 -0
- meta_dashboard/tests/urls.py +0 -55
- meta_edc/tests/__init__.py +0 -0
- meta_edc/tests/tests/__init__.py +0 -0
- meta_edc/tests/tests/test_endpoints.py +0 -555
- meta_edc-1.1.8.dist-info/METADATA +0 -767
- meta_edc-1.1.8.dist-info/WHEEL +0 -5
- meta_edc-1.1.8.dist-info/licenses/AUTHORS.rst +0 -8
- meta_edc-1.1.8.dist-info/top_level.txt +0 -20
- meta_labs/tests/__init__.py +0 -0
- meta_labs/tests/test_labs.py +0 -27
- meta_labs/tests/test_reportables.py +0 -70
- meta_labs/tests/urls.py +0 -4
- meta_lists/tests/__init__.py +0 -0
- meta_lists/tests/test_lists.py +0 -8
- meta_pharmacy/notebooks/pharmacy.ipynb +0 -41
- meta_prn/tests/__init__.py +0 -0
- meta_prn/tests/tests/__init__.py +0 -0
- meta_prn/tests/tests/test_actions.py +0 -97
- meta_prn/tests/tests/test_dm_referral.py +0 -203
- meta_prn/tests/tests/test_eos_events.py +0 -134
- meta_prn/tests/tests/test_manager_order.py +0 -14
- meta_prn/tests/tests/test_pregnancy_notification.py +0 -93
- meta_prn/tests/urls.py +0 -10
- meta_rando/tests/__init__.py +0 -0
- meta_rando/tests/tests/__init__.py +0 -0
- meta_rando/tests/tests/test_randomizers.py +0 -57
- meta_reports/tests/__init__.py +0 -0
- meta_reports/tests/test_reports.py +0 -35
- meta_reports/tests/test_sql_gen.py +0 -5
- meta_reports/tests/urls.py +0 -4
- meta_screening/offline_models.py +0 -3
- meta_screening/tests/__init__.py +0 -0
- meta_screening/tests/holidays.csv +0 -15
- meta_screening/tests/meta_test_case_mixin.py +0 -234
- meta_screening/tests/options.py +0 -127
- meta_screening/tests/tests/__init__.py +0 -0
- meta_screening/tests/tests/test_forms.py +0 -404
- meta_screening/tests/tests/test_screening_part_one.py +0 -108
- meta_screening/tests/tests/test_screening_part_three.py +0 -433
- meta_screening/tests/tests/test_screening_part_two.py +0 -84
- meta_sites/tests/__init__.py +0 -0
- meta_sites/tests/test_sites.py +0 -12
- meta_sites/tests/urls.py +0 -4
- meta_stats/__init__.py +0 -0
- meta_stats/incidence.py +0 -16
- meta_stats/models.py +0 -0
- meta_stats/tests/__init__.py +0 -0
- meta_stats/tests/tests/__init__.py +0 -0
- meta_stats/tests/tests/test_incidence.py +0 -10
- meta_subject/tests/__init__.py +0 -0
- meta_subject/tests/holidays.csv +0 -15
- meta_subject/tests/tests/__init__.py +0 -0
- meta_subject/tests/tests/test_egfr.py +0 -234
- meta_subject/tests/tests/test_fixes.py +0 -64
- meta_subject/tests/tests/test_followup.py +0 -52
- meta_subject/tests/tests/test_manager_order.py +0 -11
- meta_subject/tests/tests/test_medication_adherence.py +0 -79
- meta_subject/tests/tests/test_metadata_rules.py +0 -135
- meta_subject/tests/tests/test_mnsi.py +0 -341
- meta_subject/tests/tests/test_next_appointment.py +0 -231
- meta_subject/tests/tests/test_patient_history_form.py +0 -74
- meta_subject/tests/tests/test_physical_exam.py +0 -84
- meta_subject/tests/tests/test_sf12.py +0 -161
- meta_subject/tests/tests/test_study_medication.py +0 -229
- meta_subject/tests/urls.py +0 -24
- meta_visit_schedule/tests/__init__.py +0 -0
- meta_visit_schedule/tests/tests/__init__.py +0 -0
- meta_visit_schedule/tests/tests/test_schedule.py +0 -181
- meta_visit_schedule/tests/urls.py +0 -4
- tests/__init__.py +0 -0
- tests/etc/randomization_list.csv +0 -241
- tests/etc/randomization_list_phase_three.csv +0 -241
- tests/etc/user-aes-local.key +0 -0
- tests/etc/user-aes-restricted.key +0 -1
- tests/etc/user-rsa-local-private.pem +0 -27
- tests/etc/user-rsa-local-public.pem +0 -9
- tests/etc/user-rsa-restricted-private.pem +0 -27
- tests/etc/user-rsa-restricted-public.pem +0 -9
- tests/etc/user-salt-local.key +0 -0
- tests/etc/user-salt-restricted.key +0 -0
- tests/holidays.csv +0 -15
- tests/test_settings.py +0 -185
- {meta_edc-1.1.8.dist-info → meta_edc-1.1.12.dist-info}/licenses/LICENSE +0 -0
- /meta_ae/tests/__init__.py → /meta_subject/management/__init__py.py +0 -0
- /meta_ae/tests/tests/__init__.py → /meta_subject/management/commands/__init__py.py +0 -0
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from datetime import datetime
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from zoneinfo import ZoneInfo
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import time_machine
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from django.core.exceptions import ObjectDoesNotExist
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from django.test import TestCase, override_settings
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from edc_constants.constants import NO, YES
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from model_bakery import baker
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from meta_screening.tests.meta_test_case_mixin import MetaTestCaseMixin
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from meta_subject.models import SubjectVisit
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from meta_visit_schedule.constants import (
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MONTH1,
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MONTH39,
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MONTH42,
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WEEK2,
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)
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test_datetime = datetime(2019, 6, 11, 8, 00, tzinfo=ZoneInfo("UTC"))
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@override_settings(
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EDC_PROTOCOL_STUDY_OPEN_DATETIME=test_datetime - relativedelta(years=3),
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class TestMnsiRequired(MetaTestCaseMixin, TestCase):
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self.subject_screening,
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traveller.stop()
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def get_visit(self, visit_code: str):
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If the visit already exists, it will be returned. If not, it
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will be created (along with any interim visits) and returned.
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"""
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subject_identifier = self.subject_consent.subject_identifier
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try:
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subject_visit = SubjectVisit.objects.get(
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SubjectVisit.objects.filter(
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.order_by("visit_code")
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.last()
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while subject_visit.visit_code != visit_code:
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self.assertEqual(subject_visit.visit_code, visit_code)
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return subject_visit
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@staticmethod
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def set_mnsi_status(subject_visit, mnsi_performed):
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visit_mnsi = baker.make(
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"meta_subject.mnsi",
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report_datetime=subject_visit.report_datetime,
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subject_visit=subject_visit,
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mnsi_performed=mnsi_performed,
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)
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visit_mnsi.save()
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def test_mnsi_not_required_at_baseline(self):
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crfs = self.get_crf_metadata(self.subject_visit)
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self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
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def test_mnsi_not_required_at_2w(self):
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crfs = self.get_crf_metadata(self.get_visit(visit_code=WEEK2))
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self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
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def test_mnsi_required_at_1m(self):
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crfs = self.get_crf_metadata(self.get_visit(visit_code=MONTH1))
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self.assertIn("meta_subject.mnsi", [o.model for o in crfs.all()])
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def test_mnsi_not_required_at_3m_if_already_performed_at_1m(self):
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# MNSI shouldn't be required at any point after it has been performed
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month1_visit = self.get_visit(visit_code=MONTH1)
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self.set_mnsi_status(subject_visit=month1_visit, mnsi_performed=YES)
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month3_visit = self.get_visit(visit_code=MONTH3)
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crfs = self.get_crf_metadata(month3_visit)
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self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
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def test_mnsi_required_at_3m_if_not_performed_at_1m(self):
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month1_visit = self.get_visit(visit_code=MONTH1)
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self.set_mnsi_status(subject_visit=month1_visit, mnsi_performed=NO)
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month3_visit = self.get_visit(visit_code=MONTH3)
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crfs = self.get_crf_metadata(month3_visit)
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self.assertIn("meta_subject.mnsi", [o.model for o in crfs.all()])
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def test_mnsi_not_required_at_6m_if_already_performed_at_1m(self):
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# MNSI shouldn't be required at any point after it has been performed
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month1_visit = self.get_visit(visit_code=MONTH1)
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self.set_mnsi_status(subject_visit=month1_visit, mnsi_performed=YES)
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month3_visit = self.get_visit(visit_code=MONTH3)
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crfs = self.get_crf_metadata(month3_visit)
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self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
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month6_visit = self.get_visit(visit_code=MONTH6)
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crfs = self.get_crf_metadata(month6_visit)
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self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
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def test_mnsi_not_required_at_6m_if_already_performed_at_3m(self):
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month1_visit = self.get_visit(visit_code=MONTH1)
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self.set_mnsi_status(subject_visit=month1_visit, mnsi_performed=NO)
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# MNSI shouldn't be required at any point after it has been performed
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month3_visit = self.get_visit(visit_code=MONTH3)
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self.set_mnsi_status(subject_visit=month3_visit, mnsi_performed=YES)
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month6_visit = self.get_visit(visit_code=MONTH6)
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crfs = self.get_crf_metadata(month6_visit)
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self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
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def test_mnsi_required_at_6m_if_not_performed_by_3m(self):
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month1_visit = self.get_visit(visit_code=MONTH1)
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self.set_mnsi_status(subject_visit=month1_visit, mnsi_performed=NO)
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month3_visit = self.get_visit(visit_code=MONTH3)
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self.set_mnsi_status(subject_visit=month3_visit, mnsi_performed=NO)
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month6_visit = self.get_visit(visit_code=MONTH6)
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crfs = self.get_crf_metadata(month6_visit)
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self.assertIn("meta_subject.mnsi", [o.model for o in crfs.all()])
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def test_mnsi_not_required_at_9m_if_already_performed_at_1m(self):
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# MNSI shouldn't be required at any point after it has been performed
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month1_visit = self.get_visit(visit_code=MONTH1)
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self.set_mnsi_status(subject_visit=month1_visit, mnsi_performed=YES)
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month3_visit = self.get_visit(visit_code=MONTH3)
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crfs = self.get_crf_metadata(month3_visit)
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self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
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month6_visit = self.get_visit(visit_code=MONTH6)
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crfs = self.get_crf_metadata(month6_visit)
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self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
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month9_visit = self.get_visit(visit_code=MONTH9)
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crfs = self.get_crf_metadata(month9_visit)
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self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
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185
|
-
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186
|
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def test_mnsi_not_required_at_9m_if_already_performed_at_3m(self):
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187
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month1_visit = self.get_visit(visit_code=MONTH1)
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188
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self.set_mnsi_status(subject_visit=month1_visit, mnsi_performed=NO)
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189
|
-
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190
|
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# MNSI shouldn't be required at any point after it has been performed
|
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191
|
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month3_visit = self.get_visit(visit_code=MONTH3)
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192
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self.set_mnsi_status(subject_visit=month3_visit, mnsi_performed=YES)
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193
|
-
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194
|
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month6_visit = self.get_visit(visit_code=MONTH6)
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195
|
-
crfs = self.get_crf_metadata(month6_visit)
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196
|
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self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
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197
|
-
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198
|
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month9_visit = self.get_visit(visit_code=MONTH9)
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crfs = self.get_crf_metadata(month9_visit)
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200
|
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self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
|
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201
|
-
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202
|
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def test_mnsi_not_required_at_9m_if_already_performed_at_6m(self):
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203
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month1_visit = self.get_visit(visit_code=MONTH1)
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self.set_mnsi_status(subject_visit=month1_visit, mnsi_performed=NO)
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205
|
-
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206
|
-
month3_visit = self.get_visit(visit_code=MONTH3)
|
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207
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-
self.set_mnsi_status(subject_visit=month3_visit, mnsi_performed=NO)
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208
|
-
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209
|
-
# MNSI shouldn't be required at any point after it has been performed
|
|
210
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month6_visit = self.get_visit(visit_code=MONTH6)
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211
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self.set_mnsi_status(subject_visit=month6_visit, mnsi_performed=YES)
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212
|
-
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213
|
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month9_visit = self.get_visit(visit_code=MONTH9)
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|
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crfs = self.get_crf_metadata(month9_visit)
|
|
215
|
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self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
|
|
216
|
-
|
|
217
|
-
def test_mnsi_not_required_between_9m_and_33m_when_performed_in_first_6m(self):
|
|
218
|
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month1_visit = self.get_visit(visit_code=MONTH1)
|
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219
|
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self.set_mnsi_status(subject_visit=month1_visit, mnsi_performed=NO)
|
|
220
|
-
|
|
221
|
-
month3_visit = self.get_visit(visit_code=MONTH3)
|
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222
|
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self.set_mnsi_status(subject_visit=month3_visit, mnsi_performed=YES)
|
|
223
|
-
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|
224
|
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for visit_code in [
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|
225
|
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MONTH9,
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226
|
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MONTH12,
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|
227
|
-
MONTH15,
|
|
228
|
-
MONTH18,
|
|
229
|
-
MONTH21,
|
|
230
|
-
MONTH24,
|
|
231
|
-
MONTH27,
|
|
232
|
-
MONTH30,
|
|
233
|
-
MONTH33,
|
|
234
|
-
]:
|
|
235
|
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with self.subTest(visit_code=visit_code):
|
|
236
|
-
subject_visit = self.get_visit(visit_code=visit_code)
|
|
237
|
-
self.assertEqual(subject_visit.visit_code, visit_code)
|
|
238
|
-
self.assertEqual(subject_visit.visit_code_sequence, 0)
|
|
239
|
-
crfs = self.get_crf_metadata(subject_visit)
|
|
240
|
-
self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
|
|
241
|
-
|
|
242
|
-
def test_mnsi_not_required_between_9m_and_33m_even_if_not_performed_first_6m(self):
|
|
243
|
-
month1_visit = self.get_visit(visit_code=MONTH1)
|
|
244
|
-
self.set_mnsi_status(subject_visit=month1_visit, mnsi_performed=NO)
|
|
245
|
-
|
|
246
|
-
month3_visit = self.get_visit(visit_code=MONTH3)
|
|
247
|
-
self.set_mnsi_status(subject_visit=month3_visit, mnsi_performed=NO)
|
|
248
|
-
|
|
249
|
-
month6_visit = self.get_visit(visit_code=MONTH6)
|
|
250
|
-
self.set_mnsi_status(subject_visit=month6_visit, mnsi_performed=NO)
|
|
251
|
-
|
|
252
|
-
for visit_code in [
|
|
253
|
-
MONTH9,
|
|
254
|
-
MONTH12,
|
|
255
|
-
MONTH15,
|
|
256
|
-
MONTH18,
|
|
257
|
-
MONTH21,
|
|
258
|
-
MONTH24,
|
|
259
|
-
MONTH27,
|
|
260
|
-
MONTH30,
|
|
261
|
-
MONTH33,
|
|
262
|
-
]:
|
|
263
|
-
with self.subTest(visit_code=visit_code):
|
|
264
|
-
subject_visit = self.get_visit(visit_code=visit_code)
|
|
265
|
-
self.assertEqual(subject_visit.visit_code, visit_code)
|
|
266
|
-
self.assertEqual(subject_visit.visit_code_sequence, 0)
|
|
267
|
-
crfs = self.get_crf_metadata(subject_visit)
|
|
268
|
-
self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
|
|
269
|
-
|
|
270
|
-
def test_mnsi_required_between_36m_and_45m(self):
|
|
271
|
-
traveller = time_machine.travel(datetime(2024, 12, 17, tzinfo=ZoneInfo("UTC")))
|
|
272
|
-
traveller.start()
|
|
273
|
-
self.get_subject_consent_extended(self.subject_consent, consent_datetime=get_utcnow())
|
|
274
|
-
traveller.stop()
|
|
275
|
-
|
|
276
|
-
month1_visit = self.get_visit(visit_code=MONTH1)
|
|
277
|
-
traveller = time_machine.travel(month1_visit.report_datetime)
|
|
278
|
-
traveller.start()
|
|
279
|
-
self.set_mnsi_status(subject_visit=month1_visit, mnsi_performed=YES)
|
|
280
|
-
|
|
281
|
-
for visit_code in [MONTH36, MONTH39, MONTH42, MONTH45]:
|
|
282
|
-
with self.subTest(visit_code=visit_code):
|
|
283
|
-
subject_visit = self.get_visit(visit_code=visit_code)
|
|
284
|
-
crfs = self.get_crf_metadata(subject_visit)
|
|
285
|
-
self.assertIn("meta_subject.mnsi", [o.model for o in crfs.all()])
|
|
286
|
-
self.set_mnsi_status(subject_visit=subject_visit, mnsi_performed=NO)
|
|
287
|
-
traveller.stop()
|
|
288
|
-
|
|
289
|
-
def test_mnsi_only_required_once_between_36m_and_45m(self):
|
|
290
|
-
traveller = time_machine.travel(datetime(2024, 12, 17, tzinfo=ZoneInfo("UTC")))
|
|
291
|
-
traveller.start()
|
|
292
|
-
self.get_subject_consent_extended(self.subject_consent, consent_datetime=get_utcnow())
|
|
293
|
-
month1_visit = self.get_visit(visit_code=MONTH1)
|
|
294
|
-
self.set_mnsi_status(subject_visit=month1_visit, mnsi_performed=YES)
|
|
295
|
-
|
|
296
|
-
month36_visit = self.get_visit(visit_code=MONTH36)
|
|
297
|
-
crfs = self.get_crf_metadata(month36_visit)
|
|
298
|
-
self.assertIn("meta_subject.mnsi", [o.model for o in crfs.all()])
|
|
299
|
-
self.set_mnsi_status(subject_visit=month36_visit, mnsi_performed=NO)
|
|
300
|
-
|
|
301
|
-
month39_visit = self.get_next_subject_visit(month36_visit)
|
|
302
|
-
crfs = self.get_crf_metadata(month39_visit)
|
|
303
|
-
self.assertIn("meta_subject.mnsi", [o.model for o in crfs.all()])
|
|
304
|
-
self.set_mnsi_status(subject_visit=month39_visit, mnsi_performed=NO)
|
|
305
|
-
|
|
306
|
-
month42_visit = self.get_next_subject_visit(month39_visit)
|
|
307
|
-
crfs = self.get_crf_metadata(month42_visit)
|
|
308
|
-
self.assertIn("meta_subject.mnsi", [o.model for o in crfs.all()])
|
|
309
|
-
self.set_mnsi_status(subject_visit=month42_visit, mnsi_performed=YES)
|
|
310
|
-
|
|
311
|
-
month45_visit = self.get_next_subject_visit(month42_visit)
|
|
312
|
-
crfs = self.get_crf_metadata(month45_visit)
|
|
313
|
-
self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
|
|
314
|
-
traveller.stop()
|
|
315
|
-
|
|
316
|
-
def test_mnsi_required_at_48m(self):
|
|
317
|
-
traveller = time_machine.travel(datetime(2024, 12, 16, tzinfo=ZoneInfo("UTC")))
|
|
318
|
-
traveller.start()
|
|
319
|
-
self.get_subject_consent_extended(self.subject_consent, consent_datetime=get_utcnow())
|
|
320
|
-
month1_visit = self.get_visit(visit_code=MONTH1)
|
|
321
|
-
crfs = self.get_crf_metadata(month1_visit)
|
|
322
|
-
self.assertIn("meta_subject.mnsi", [o.model for o in crfs.all()])
|
|
323
|
-
self.set_mnsi_status(subject_visit=month1_visit, mnsi_performed=YES)
|
|
324
|
-
|
|
325
|
-
month3_visit = self.get_next_subject_visit(month1_visit)
|
|
326
|
-
crfs = self.get_crf_metadata(month3_visit)
|
|
327
|
-
self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
|
|
328
|
-
|
|
329
|
-
month36_visit = self.get_visit(visit_code=MONTH36)
|
|
330
|
-
crfs = self.get_crf_metadata(month36_visit)
|
|
331
|
-
self.assertIn("meta_subject.mnsi", [o.model for o in crfs.all()])
|
|
332
|
-
self.set_mnsi_status(subject_visit=month36_visit, mnsi_performed=YES)
|
|
333
|
-
|
|
334
|
-
month39_visit = self.get_next_subject_visit(month36_visit)
|
|
335
|
-
crfs = self.get_crf_metadata(month39_visit)
|
|
336
|
-
self.assertNotIn("meta_subject.mnsi", [o.model for o in crfs.all()])
|
|
337
|
-
|
|
338
|
-
month48_visit = self.get_visit(visit_code=MONTH48)
|
|
339
|
-
crfs = self.get_crf_metadata(month48_visit)
|
|
340
|
-
self.assertIn("meta_subject.mnsi", [o.model for o in crfs.all()])
|
|
341
|
-
traveller.stop()
|
|
@@ -1,231 +0,0 @@
|
|
|
1
|
-
from datetime import datetime
|
|
2
|
-
from zoneinfo import ZoneInfo
|
|
3
|
-
|
|
4
|
-
import time_machine
|
|
5
|
-
from dateutil.relativedelta import relativedelta
|
|
6
|
-
from django.core.exceptions import ValidationError
|
|
7
|
-
from django.test import TestCase, tag
|
|
8
|
-
from edc_appointment.exceptions import AppointmentWindowError
|
|
9
|
-
from edc_constants.constants import CLINIC
|
|
10
|
-
from edc_facility.models import HealthFacilityTypes
|
|
11
|
-
from edc_facility.utils import get_health_facility_model, get_health_facility_model_cls
|
|
12
|
-
from edc_metadata.metadata_handler import MetadataHandlerError
|
|
13
|
-
from edc_sites.utils import get_site_model_cls
|
|
14
|
-
from edc_visit_schedule.models import VisitSchedule
|
|
15
|
-
|
|
16
|
-
from meta_screening.tests.meta_test_case_mixin import MetaTestCaseMixin
|
|
17
|
-
from meta_screening.tests.options import now
|
|
18
|
-
from meta_subject.models import NextAppointment
|
|
19
|
-
|
|
20
|
-
|
|
21
|
-
@time_machine.travel(datetime(2019, 6, 11, 8, 00, tzinfo=ZoneInfo("UTC")))
|
|
22
|
-
class TestNextAppointment(MetaTestCaseMixin, TestCase):
|
|
23
|
-
|
|
24
|
-
def setUp(self):
|
|
25
|
-
super().setUp()
|
|
26
|
-
self.update_health_facility_model()
|
|
27
|
-
self.subject_visit = self.get_subject_visit(appt_datetime=now)
|
|
28
|
-
|
|
29
|
-
def update_health_facility_model(self):
|
|
30
|
-
from edc_sites.site import sites as site_sites
|
|
31
|
-
|
|
32
|
-
clinic = HealthFacilityTypes.objects.get(name=CLINIC)
|
|
33
|
-
for site_obj in get_site_model_cls().objects.all():
|
|
34
|
-
single_site = site_sites.get(site_obj.id)
|
|
35
|
-
get_health_facility_model_cls().objects.create(
|
|
36
|
-
name=single_site.name,
|
|
37
|
-
title=single_site.title,
|
|
38
|
-
health_facility_type=clinic,
|
|
39
|
-
mon=True,
|
|
40
|
-
tue=True,
|
|
41
|
-
wed=True,
|
|
42
|
-
thu=True,
|
|
43
|
-
fri=True,
|
|
44
|
-
sat=False,
|
|
45
|
-
sun=False,
|
|
46
|
-
site_id=site_obj.id,
|
|
47
|
-
)
|
|
48
|
-
|
|
49
|
-
@tag("6")
|
|
50
|
-
def test_in_visit_crfs(self):
|
|
51
|
-
dt = self.subject_visit.report_datetime.date() + relativedelta(days=10)
|
|
52
|
-
for i in range(1, 7):
|
|
53
|
-
dt = dt + relativedelta(days=1)
|
|
54
|
-
if dt.weekday() < 6:
|
|
55
|
-
break
|
|
56
|
-
|
|
57
|
-
try:
|
|
58
|
-
NextAppointment.objects.create(
|
|
59
|
-
subject_visit=self.subject_visit,
|
|
60
|
-
report_datetime=self.subject_visit.report_datetime,
|
|
61
|
-
appt_date=dt,
|
|
62
|
-
health_facility=get_health_facility_model_cls().objects.all()[0],
|
|
63
|
-
)
|
|
64
|
-
except MetadataHandlerError as e:
|
|
65
|
-
self.fail(f"Unexpected MetadataHandlerError. Got {e}")
|
|
66
|
-
|
|
67
|
-
@tag("6")
|
|
68
|
-
def test_validates_clinic_day(self):
|
|
69
|
-
dt = self.subject_visit.report_datetime.date() + relativedelta(days=10)
|
|
70
|
-
for i in range(1, 7):
|
|
71
|
-
dt = dt + relativedelta(days=1)
|
|
72
|
-
if dt.weekday() > 5:
|
|
73
|
-
break
|
|
74
|
-
with self.assertRaises(ValidationError) as cm:
|
|
75
|
-
NextAppointment.objects.create(
|
|
76
|
-
subject_visit=self.subject_visit,
|
|
77
|
-
report_datetime=self.subject_visit.report_datetime,
|
|
78
|
-
appt_date=dt,
|
|
79
|
-
health_facility=get_health_facility_model_cls().objects.all()[0],
|
|
80
|
-
)
|
|
81
|
-
self.assertIn("Expected Mon-Fri", str(cm.exception))
|
|
82
|
-
|
|
83
|
-
@tag("6")
|
|
84
|
-
def test_appt_date_on_report_date_raises(self):
|
|
85
|
-
with self.assertRaises(ValidationError) as cm:
|
|
86
|
-
NextAppointment.objects.create(
|
|
87
|
-
subject_visit=self.subject_visit,
|
|
88
|
-
report_datetime=self.subject_visit.report_datetime,
|
|
89
|
-
appt_date=self.subject_visit.report_datetime.date(),
|
|
90
|
-
health_facility=get_health_facility_model_cls().objects.all()[0],
|
|
91
|
-
)
|
|
92
|
-
self.assertIn(
|
|
93
|
-
"Cannot be equal to the report datetime",
|
|
94
|
-
str(cm.exception),
|
|
95
|
-
)
|
|
96
|
-
|
|
97
|
-
# @tag("6")
|
|
98
|
-
# def test_next_appt_date_required(self):
|
|
99
|
-
# next_appt = self.subject_visit.appointment.next
|
|
100
|
-
# with self.assertRaises(NextAppointmentModelError) as cm:
|
|
101
|
-
# NextAppointment.objects.create(
|
|
102
|
-
# subject_visit=self.subject_visit,
|
|
103
|
-
# report_datetime=self.subject_visit.report_datetime,
|
|
104
|
-
# health_facility=get_health_facility_model_cls().objects.all()[0],
|
|
105
|
-
# visitschedule=VisitSchedule.objects.get(
|
|
106
|
-
# visit_schedule_name=self.subject_visit.visit_schedule.name,
|
|
107
|
-
# timepoint=next_appt.timepoint,
|
|
108
|
-
# ),
|
|
109
|
-
# )
|
|
110
|
-
# self.assertIn(
|
|
111
|
-
# "Appointment date or datetime is required",
|
|
112
|
-
# str(cm.exception),
|
|
113
|
-
# )
|
|
114
|
-
|
|
115
|
-
@tag("6")
|
|
116
|
-
def test_nextappt_appt_date_updates_nextappt_appt_datetime(self):
|
|
117
|
-
next_appt = self.subject_visit.appointment.next
|
|
118
|
-
original_next_appt_datetime = self.subject_visit.appointment.next.appt_datetime
|
|
119
|
-
obj = NextAppointment.objects.create(
|
|
120
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appt_date=original_next_appt_datetime.date(),
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121
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subject_visit=self.subject_visit,
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122
|
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report_datetime=self.subject_visit.report_datetime,
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123
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health_facility=get_health_facility_model_cls().objects.all()[0],
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124
|
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visitschedule=VisitSchedule.objects.get(
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125
|
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visit_schedule_name=self.subject_visit.visit_schedule.name,
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126
|
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timepoint=next_appt.timepoint,
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127
|
-
),
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128
|
-
)
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129
|
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self.assertIsNotNone(obj.appt_datetime)
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130
|
-
|
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131
|
-
# @tag("6")
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|
132
|
-
# def test_nextappt_appt_datetime_updates_nextappt_appt_date(self):
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133
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# next_appt = self.subject_visit.appointment.next
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134
|
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# original_next_appt_datetime = self.subject_visit.appointment.next.appt_datetime
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135
|
-
# obj = NextAppointment.objects.create(
|
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136
|
-
# appt_datetime=original_next_appt_datetime,
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137
|
-
# subject_visit=self.subject_visit,
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|
138
|
-
# report_datetime=self.subject_visit.report_datetime,
|
|
139
|
-
# health_facility=get_health_facility_model_cls().objects.all()[0],
|
|
140
|
-
# visitschedule=VisitSchedule.objects.get(
|
|
141
|
-
# visit_schedule_name=self.subject_visit.visit_schedule.name,
|
|
142
|
-
# timepoint=next_appt.timepoint,
|
|
143
|
-
# ),
|
|
144
|
-
# )
|
|
145
|
-
# self.assertIsNotNone(obj.appt_date)
|
|
146
|
-
|
|
147
|
-
@tag("6")
|
|
148
|
-
def test_next_appt_date_same_as_original_next_appt(self):
|
|
149
|
-
get_health_facility_model()
|
|
150
|
-
next_appt = self.subject_visit.appointment.next
|
|
151
|
-
obj = NextAppointment.objects.create(
|
|
152
|
-
subject_visit=self.subject_visit,
|
|
153
|
-
report_datetime=self.subject_visit.report_datetime,
|
|
154
|
-
appt_date=next_appt.appt_datetime.date(),
|
|
155
|
-
health_facility=get_health_facility_model_cls().objects.all()[0],
|
|
156
|
-
visitschedule=VisitSchedule.objects.get(
|
|
157
|
-
visit_schedule_name=self.subject_visit.visit_schedule.name,
|
|
158
|
-
timepoint=next_appt.timepoint,
|
|
159
|
-
),
|
|
160
|
-
)
|
|
161
|
-
next_appt.refresh_from_db()
|
|
162
|
-
self.assertEqual(next_appt.appt_datetime, obj.appt_datetime)
|
|
163
|
-
|
|
164
|
-
@tag("6")
|
|
165
|
-
def test_updates_next_appointment_datetime(self):
|
|
166
|
-
next_appt = self.subject_visit.appointment.next
|
|
167
|
-
original_next_appt_datetime = self.subject_visit.appointment.next.appt_datetime
|
|
168
|
-
obj = NextAppointment.objects.create(
|
|
169
|
-
subject_visit=self.subject_visit,
|
|
170
|
-
report_datetime=self.subject_visit.report_datetime,
|
|
171
|
-
appt_date=original_next_appt_datetime.date() + relativedelta(days=1),
|
|
172
|
-
health_facility=get_health_facility_model_cls().objects.all()[0],
|
|
173
|
-
visitschedule=VisitSchedule.objects.get(
|
|
174
|
-
visit_schedule_name=self.subject_visit.visit_schedule.name,
|
|
175
|
-
timepoint=next_appt.timepoint,
|
|
176
|
-
),
|
|
177
|
-
)
|
|
178
|
-
next_appt.refresh_from_db()
|
|
179
|
-
self.assertEqual(next_appt.appt_datetime, obj.appt_datetime)
|
|
180
|
-
|
|
181
|
-
@tag("6")
|
|
182
|
-
def test_raises_if_next_appointment_datetime_is_before_current(self):
|
|
183
|
-
next_appt = self.subject_visit.appointment.next
|
|
184
|
-
current_appt_datetime = self.subject_visit.appointment.appt_datetime
|
|
185
|
-
self.assertRaises(
|
|
186
|
-
ValidationError,
|
|
187
|
-
NextAppointment.objects.create,
|
|
188
|
-
subject_visit=self.subject_visit,
|
|
189
|
-
report_datetime=self.subject_visit.report_datetime,
|
|
190
|
-
appt_date=current_appt_datetime.date(),
|
|
191
|
-
health_facility=get_health_facility_model_cls().objects.all()[0],
|
|
192
|
-
visitschedule=VisitSchedule.objects.get(
|
|
193
|
-
visit_schedule_name=self.subject_visit.visit_schedule.name,
|
|
194
|
-
timepoint=next_appt.timepoint,
|
|
195
|
-
),
|
|
196
|
-
)
|
|
197
|
-
|
|
198
|
-
@tag("6")
|
|
199
|
-
def test_raises_on_appt_date_outside_of_window_for_selected_visit_code(self):
|
|
200
|
-
next_appt = self.subject_visit.appointment.next
|
|
201
|
-
bad_next_date = self.subject_visit.report_datetime.date() + relativedelta(days=1)
|
|
202
|
-
self.assertRaises(
|
|
203
|
-
AppointmentWindowError,
|
|
204
|
-
NextAppointment.objects.create,
|
|
205
|
-
subject_visit=self.subject_visit,
|
|
206
|
-
report_datetime=self.subject_visit.report_datetime,
|
|
207
|
-
appt_date=bad_next_date,
|
|
208
|
-
health_facility=get_health_facility_model_cls().objects.all()[0],
|
|
209
|
-
visitschedule=VisitSchedule.objects.get(
|
|
210
|
-
visit_schedule_name=self.subject_visit.visit_schedule.name,
|
|
211
|
-
timepoint=next_appt.timepoint,
|
|
212
|
-
),
|
|
213
|
-
)
|
|
214
|
-
|
|
215
|
-
@tag("6")
|
|
216
|
-
def test_next_is_interim_or_unscheduled(self):
|
|
217
|
-
dt = self.subject_visit.report_datetime.date() + relativedelta(days=10)
|
|
218
|
-
for i in range(1, 7):
|
|
219
|
-
dt = dt + relativedelta(days=1)
|
|
220
|
-
if dt.weekday() < 6:
|
|
221
|
-
break
|
|
222
|
-
NextAppointment.objects.create(
|
|
223
|
-
subject_visit=self.subject_visit,
|
|
224
|
-
report_datetime=self.subject_visit.report_datetime,
|
|
225
|
-
appt_date=dt,
|
|
226
|
-
health_facility=get_health_facility_model_cls().objects.all()[0],
|
|
227
|
-
visitschedule=VisitSchedule.objects.get(
|
|
228
|
-
visit_schedule_name=self.subject_visit.visit_schedule.name,
|
|
229
|
-
timepoint=self.subject_visit.appointment.timepoint,
|
|
230
|
-
),
|
|
231
|
-
)
|
|
@@ -1,74 +0,0 @@
|
|
|
1
|
-
from django.conf import settings
|
|
2
|
-
from django.contrib.sites.models import Site
|
|
3
|
-
from django.test import TestCase
|
|
4
|
-
from edc_constants.constants import COMPLETE, NO, NONE, NOT_APPLICABLE, YES
|
|
5
|
-
from edc_list_data import PreloadData
|
|
6
|
-
|
|
7
|
-
from meta_lists.models import (
|
|
8
|
-
ArvRegimens,
|
|
9
|
-
BaselineSymptoms,
|
|
10
|
-
DiabetesSymptoms,
|
|
11
|
-
OiProphylaxis,
|
|
12
|
-
)
|
|
13
|
-
from meta_screening.tests.meta_test_case_mixin import MetaTestCaseMixin
|
|
14
|
-
from meta_screening.tests.options import now
|
|
15
|
-
from meta_subject.forms import PatientHistoryForm
|
|
16
|
-
|
|
17
|
-
|
|
18
|
-
class BaseTestPatientHistory(MetaTestCaseMixin, TestCase):
|
|
19
|
-
def get_options(self):
|
|
20
|
-
self.subject_visit = self.get_subject_visit(appt_datetime=now)
|
|
21
|
-
symptoms = BaselineSymptoms.objects.filter(name=NONE)
|
|
22
|
-
arv_regimen = ArvRegimens.objects.filter(name="TDF_3TC_ATV_r")
|
|
23
|
-
oi_prophylaxis = OiProphylaxis.objects.filter(name__in=["fluconazole", "isoniazid"])
|
|
24
|
-
dm_symptoms = DiabetesSymptoms.objects.all()
|
|
25
|
-
return {
|
|
26
|
-
"current_arv_regimen": arv_regimen[0].id,
|
|
27
|
-
"current_smoker": YES,
|
|
28
|
-
"dia_blood_pressure": 80,
|
|
29
|
-
"dm_in_family": NO,
|
|
30
|
-
"dm_symptoms": dm_symptoms,
|
|
31
|
-
"dyslipidaemia_diagnosis": NO,
|
|
32
|
-
"on_dyslipidaemia_treatment": NOT_APPLICABLE,
|
|
33
|
-
"dyslipidaemia_rx": NOT_APPLICABLE,
|
|
34
|
-
"family_diabetics": NO,
|
|
35
|
-
"former_smoker": NOT_APPLICABLE,
|
|
36
|
-
"has_abdominal_tenderness": NO,
|
|
37
|
-
"has_enlarged_liver": NO,
|
|
38
|
-
"has_previous_arv_regimen": NO,
|
|
39
|
-
"heart_rate": 65,
|
|
40
|
-
"htn_diagnosis": NO,
|
|
41
|
-
"htn_treatment": None,
|
|
42
|
-
"is_heartbeat_regular": YES,
|
|
43
|
-
"jaundice": YES,
|
|
44
|
-
"oi_prophylaxis": oi_prophylaxis,
|
|
45
|
-
"on_htn_treatment": NO,
|
|
46
|
-
"on_oi_prophylaxis": YES,
|
|
47
|
-
"other_dm_symptoms": "erik",
|
|
48
|
-
"past_year_symptoms": None,
|
|
49
|
-
"peripheral_oedema": YES,
|
|
50
|
-
"previous_arv_regimen": [],
|
|
51
|
-
"report_datetime": self.subject_visit.report_datetime,
|
|
52
|
-
"respiratory_rate": 12,
|
|
53
|
-
"subject_visit": self.subject_visit.pk,
|
|
54
|
-
"symptoms": symptoms,
|
|
55
|
-
"sys_blood_pressure": 120,
|
|
56
|
-
"taking_statins": YES,
|
|
57
|
-
"temperature": 37,
|
|
58
|
-
"waist_circumference": 61,
|
|
59
|
-
"weight": 65,
|
|
60
|
-
"crf_status": COMPLETE,
|
|
61
|
-
"vl_undetectable": YES,
|
|
62
|
-
"site": Site.objects.get(id=settings.SITE_ID),
|
|
63
|
-
}
|
|
64
|
-
|
|
65
|
-
|
|
66
|
-
class TestPatientHistoryPhaseThree(BaseTestPatientHistory):
|
|
67
|
-
def test_ok_phase_three(self):
|
|
68
|
-
from meta_lists.list_data import list_data
|
|
69
|
-
|
|
70
|
-
PreloadData(list_data=list_data)
|
|
71
|
-
data = {k: v for k, v in self.get_options().items()}
|
|
72
|
-
form = PatientHistoryForm(data=data)
|
|
73
|
-
form.is_valid()
|
|
74
|
-
self.assertEqual(form._errors, {})
|