meta-edc 1.1.8__py3-none-any.whl → 1.1.12__py3-none-any.whl

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  1. meta_ae/action_items.py +2 -1
  2. meta_ae/admin/__init__.py +11 -0
  3. meta_ae/admin/ae_susar_admin.py +1 -1
  4. meta_ae/admin/death_report_admin.py +1 -1
  5. meta_ae/admin/modeladmin_mixins.py +10 -12
  6. meta_ae/baker_recipes.py +3 -3
  7. meta_ae/forms/__init__.py +13 -0
  8. meta_ae/forms/modelform_mixins.py +2 -2
  9. meta_ae/migrations/0001_initial.py +27 -27
  10. meta_ae/migrations/0006_aelocalreview_aesponsorreview.py +5 -5
  11. meta_ae/migrations/0022_historicalhospitalization_hospitalization.py +5 -13
  12. meta_ae/migrations/0023_alter_aefollowup_action_identifier_and_more.py +2017 -0
  13. meta_ae/model_mixins/__init__.py +2 -0
  14. meta_ae/model_mixins/ae_review_model_mixin.py +6 -6
  15. meta_ae/model_mixins/death_report_model_mixin.py +3 -3
  16. meta_ae/models/__init__.py +13 -0
  17. meta_ae/models/hospitalization.py +3 -3
  18. meta_ae/pdf_reports/__init__.py +2 -0
  19. meta_analytics/.DS_Store +0 -0
  20. meta_analytics/dataframes/__init__.py +24 -0
  21. meta_analytics/dataframes/get_eos_df.py +1 -2
  22. meta_analytics/dataframes/get_glucose_df.py +6 -7
  23. meta_analytics/dataframes/get_glucose_fbg_df.py +2 -3
  24. meta_analytics/dataframes/get_glucose_fbg_ogtt_df.py +1 -2
  25. meta_analytics/dataframes/get_last_imp_visits_df.py +5 -6
  26. meta_analytics/dataframes/glucose_endpoints/__init__.py +2 -0
  27. meta_analytics/dataframes/glucose_endpoints/endpoint_by_date.py +13 -20
  28. meta_analytics/dataframes/glucose_endpoints/glucose_endpoints_by_date.py +9 -10
  29. meta_analytics/dataframes/screening/__init__.py +2 -0
  30. meta_analytics/dataframes/screening/get_glucose_tested_only_df.py +1 -2
  31. meta_analytics/dataframes/screening/get_screening_df.py +6 -10
  32. meta_analytics/dataframes/utils.py +3 -8
  33. meta_analytics/get_tables.py +1 -2
  34. meta_analytics/tables/__init__.py +2 -0
  35. meta_consent/action_items.py +2 -1
  36. meta_consent/admin/__init__.py +6 -0
  37. meta_consent/admin/actions/__init__.py +2 -0
  38. meta_consent/admin/actions/create_missing_prescriptions.py +1 -1
  39. meta_consent/admin/list_filters.py +2 -2
  40. meta_consent/admin/modeladmin_mixins.py +3 -4
  41. meta_consent/admin/subject_consent_v1_ext_admin.py +2 -2
  42. meta_consent/baker_recipes.py +7 -8
  43. meta_consent/form_validators/__init__.py +2 -0
  44. meta_consent/forms/__init__.py +7 -0
  45. meta_consent/forms/subject_consent_v1_ext_form.py +2 -3
  46. meta_consent/forms/subject_reconsent_form.py +4 -4
  47. meta_consent/management/commands/create_missing_prescriptions.py +4 -2
  48. meta_consent/migrations/0001_initial.py +9 -9
  49. meta_consent/migrations/0024_historicalsubjectconsentv1.py +3 -8
  50. meta_consent/migrations/0026_historicalsubjectconsentv1ext_subjectconsentv1ext.py +5 -14
  51. meta_consent/migrations/0032_alter_historicalsubjectconsent_device_created_and_more.py +678 -0
  52. meta_consent/models/__init__.py +9 -0
  53. meta_consent/models/model_mixins.py +1 -2
  54. meta_consent/models/signals.py +9 -10
  55. meta_consent/models/subject_consent.py +1 -1
  56. meta_consent/models/subject_reconsent.py +3 -3
  57. meta_dashboard/patterns.py +1 -1
  58. meta_dashboard/templatetags/meta_dashboard_extras.py +1 -1
  59. meta_dashboard/view_utils/__init__.py +7 -0
  60. meta_dashboard/view_utils/subject_screening_button.py +9 -16
  61. meta_dashboard/views/__init__.py +8 -0
  62. meta_dashboard/views/ae/__init__.py +2 -0
  63. meta_dashboard/views/ae/ae_listboard_view.py +1 -1
  64. meta_dashboard/views/ae/death_report_listboard_view.py +1 -1
  65. meta_dashboard/views/screening/__init__.py +2 -0
  66. meta_dashboard/views/subject/__init__.py +2 -0
  67. meta_dashboard/views/subject/dashboard/__init__.py +2 -0
  68. meta_dashboard/views/subject/dashboard/dashboard_view.py +1 -1
  69. meta_dashboard/views/subject/listboard/__init__.py +2 -0
  70. meta_edc/__init__.py +5 -9
  71. meta_edc/celery.py +1 -1
  72. meta_edc/celery_live.py +1 -1
  73. meta_edc/celery_uat.py +1 -1
  74. meta_edc/management/commands/update_forms_reference.py +10 -12
  75. meta_edc/settings/debug.py +5 -4
  76. meta_edc/settings/defaults.py +18 -3
  77. meta_edc/settings/live.py +3 -1
  78. meta_edc/settings/logging.py +9 -4
  79. meta_edc/settings/minimal.py +4 -5
  80. meta_edc/settings/uat.py +3 -1
  81. meta_edc/views/__init__.py +2 -0
  82. meta_edc-1.1.12.dist-info/METADATA +174 -0
  83. {meta_edc-1.1.8.dist-info → meta_edc-1.1.12.dist-info}/RECORD +413 -526
  84. meta_edc-1.1.12.dist-info/WHEEL +4 -0
  85. meta_lists/migrations/0020_alter_abnormalfootappearanceobservations_extra_value_and_more.py +404 -0
  86. meta_pharmacy/admin/__init__.py +5 -0
  87. meta_pharmacy/admin/substitutions_admin.py +2 -2
  88. meta_pharmacy/forms/__init__.py +2 -0
  89. meta_pharmacy/forms/substitutions_form.py +6 -4
  90. meta_pharmacy/labels/__init__.py +4 -2
  91. meta_pharmacy/labels/draw_label_for_subject_with_barcode.py +1 -2
  92. meta_pharmacy/labels/draw_label_with_test_data.py +2 -2
  93. meta_pharmacy/labels/label_data.py +1 -2
  94. meta_pharmacy/labels/print_sheets.py +4 -6
  95. meta_pharmacy/migrations/0002_initial.py +7 -20
  96. meta_pharmacy/migrations/0003_auto_20240909_2335.py +3 -2
  97. meta_pharmacy/migrations/0006_lotnumber_label.py +5 -14
  98. meta_pharmacy/migrations/0008_remove_lotnumber_medication_and_more.py +5 -6
  99. meta_pharmacy/migrations/0010_alter_historicallabeldata_device_created_and_more.py +382 -0
  100. meta_pharmacy/models/__init__.py +7 -0
  101. meta_pharmacy/models/label_data.py +4 -5
  102. meta_pharmacy/models/substitutions.py +3 -3
  103. meta_pharmacy/prepare_meta_pharmacy.py +1 -1
  104. meta_pharmacy/utils/__init__.py +2 -0
  105. meta_pharmacy/utils/update_initial_pharmacy_data.py +1 -1
  106. meta_prn/admin/__init__.py +16 -0
  107. meta_prn/admin/dm_referral_admin.py +2 -1
  108. meta_prn/admin/end_of_study_admin.py +6 -7
  109. meta_prn/admin/loss_to_followup_admin.py +3 -2
  110. meta_prn/admin/off_study_medication_admin.py +5 -6
  111. meta_prn/admin/offschedule_admin.py +5 -6
  112. meta_prn/admin/offschedule_dm_referral_admin.py +6 -6
  113. meta_prn/admin/offschedule_postnatal_admin.py +7 -7
  114. meta_prn/admin/offschedule_pregnancy_admin.py +8 -7
  115. meta_prn/admin/onschedule_admin.py +7 -8
  116. meta_prn/admin/onschedule_dm_referral_admin.py +6 -7
  117. meta_prn/admin/pregnancy_notification_admin.py +5 -6
  118. meta_prn/admin/protocol_incident_admin.py +1 -1
  119. meta_prn/admin/subject_transfer_admin.py +1 -1
  120. meta_prn/baker_recipes.py +4 -4
  121. meta_prn/form_validators/__init__.py +5 -0
  122. meta_prn/form_validators/end_of_study.py +2 -2
  123. meta_prn/forms/__init__.py +13 -0
  124. meta_prn/migrations/0001_initial.py +25 -25
  125. meta_prn/migrations/0017_auto_20220307_1929.py +5 -5
  126. meta_prn/migrations/0018_auto_20220309_2106.py +9 -9
  127. meta_prn/migrations/0021_auto_20220316_2147.py +13 -13
  128. meta_prn/migrations/0022_auto_20220318_0133.py +9 -9
  129. meta_prn/migrations/0032_historicalegfrnotification_egfrnotification.py +5 -13
  130. meta_prn/migrations/0038_alter_endofstudy_delivery_date_and_more.py +5 -13
  131. meta_prn/migrations/0041_endofstudy_transfer_date_and_more.py +5 -13
  132. meta_prn/migrations/0057_historicalonscheduledmreferral_and_more.py +13 -38
  133. meta_prn/migrations/0067_alter_offschedule_managers_and_more.py +2557 -0
  134. meta_prn/models/__init__.py +20 -0
  135. meta_prn/models/offschedule.py +4 -4
  136. meta_prn/models/protocol_incident.py +1 -1
  137. meta_prn/models/subject_transfer.py +8 -0
  138. meta_rando/migrations/0001_initial.py +5 -5
  139. meta_rando/migrations/0006_alter_historicalrandomizationlist_allocated_user_and_more.py +130 -0
  140. meta_reports/__init__.py +2 -0
  141. meta_reports/admin/__init__.py +16 -0
  142. meta_reports/admin/dbviews/__init__.py +13 -0
  143. meta_reports/admin/dbviews/glucose_summary_admin.py +6 -6
  144. meta_reports/admin/dbviews/imp_substitutions_admin.py +12 -11
  145. meta_reports/admin/dbviews/missing_screening_ogtt_admin/__init__.py +5 -0
  146. meta_reports/admin/dbviews/missing_screening_ogtt_admin/note_model_admin.py +27 -3
  147. meta_reports/admin/dbviews/missing_screening_ogtt_admin/unmanaged_model_admin.py +6 -6
  148. meta_reports/admin/dbviews/on_study_missing_lab_values_admin/__init__.py +2 -0
  149. meta_reports/admin/dbviews/on_study_missing_lab_values_admin/unmanaged_model_admin.py +0 -3
  150. meta_reports/admin/dbviews/on_study_missing_values_admin/__init__.py +2 -0
  151. meta_reports/admin/dbviews/patient_history_missing_baseline_cd4_admin.py +8 -8
  152. meta_reports/admin/dbviews/unattended_three_in_row2_admin.py +6 -6
  153. meta_reports/admin/dbviews/unattended_three_in_row_admin.py +5 -5
  154. meta_reports/admin/dbviews/unattended_two_in_row_admin.py +5 -5
  155. meta_reports/admin/endpoints_admin.py +1 -1
  156. meta_reports/admin/last_imp_refill_admin.py +9 -9
  157. meta_reports/admin/list_filters.py +2 -2
  158. meta_reports/admin/modeladmin_mixins.py +9 -16
  159. meta_reports/death_report.py +1 -1
  160. meta_reports/forms/__init__.py +2 -0
  161. meta_reports/forms/missing_ogtt_note_form.py +2 -3
  162. meta_reports/management/commands/generate_endpoints.py +5 -4
  163. meta_reports/migrations/0035_historicalmissingogttnote_missingogttnote.py +5 -14
  164. meta_reports/migrations/0059_alter_endpoints_created_and_more.py +161 -0
  165. meta_reports/models/__init__.py +17 -0
  166. meta_reports/models/dbviews/__init__.py +14 -0
  167. meta_reports/models/dbviews/glucose_summary/__init__.py +2 -0
  168. meta_reports/models/dbviews/glucose_summary/unmanaged_model.py +4 -5
  169. meta_reports/models/dbviews/imp_substitutions/__init__.py +2 -0
  170. meta_reports/models/dbviews/imp_substitutions/view_definition.py +1 -1
  171. meta_reports/models/dbviews/missing_screening_ogtt/__init__.py +2 -0
  172. meta_reports/models/dbviews/missing_screening_ogtt/note_model.py +1 -1
  173. meta_reports/models/dbviews/missing_screening_ogtt/unmanaged_model.py +4 -3
  174. meta_reports/models/dbviews/on_study_missing_lab_values/__init__.py +2 -0
  175. meta_reports/models/dbviews/on_study_missing_lab_values/qa_cases.py +13 -11
  176. meta_reports/models/dbviews/on_study_missing_values/__init__.py +2 -0
  177. meta_reports/models/dbviews/on_study_missing_values/qa_cases.py +18 -0
  178. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/__init__.py +2 -0
  179. meta_reports/models/dbviews/unattended_three_in_row/__init__.py +2 -0
  180. meta_reports/models/dbviews/unattended_three_in_row2/__init__.py +2 -0
  181. meta_reports/models/dbviews/unattended_two_in_row/__init__.py +2 -0
  182. meta_reports/models/endpoints.py +4 -4
  183. meta_reports/models/last_imp_refill.py +2 -3
  184. meta_reports/pdf_report.py +2 -2
  185. meta_reports/tasks.py +1 -1
  186. meta_screening/admin/__init__.py +8 -0
  187. meta_screening/admin/fieldsets.py +13 -14
  188. meta_screening/admin/list_filters.py +6 -4
  189. meta_screening/admin/screening_part_one_admin.py +1 -2
  190. meta_screening/admin/screening_part_three_admin.py +2 -3
  191. meta_screening/admin/screening_part_two_admin.py +7 -10
  192. meta_screening/admin/subject_refusal_admin.py +5 -3
  193. meta_screening/admin/subject_screening_admin.py +4 -4
  194. meta_screening/baker_recipes.py +9 -9
  195. meta_screening/eligibility/__init__.py +9 -0
  196. meta_screening/eligibility/eligibility.py +7 -7
  197. meta_screening/eligibility/eligibility_part_three/__init__.py +2 -0
  198. meta_screening/eligibility/eligibility_part_three/base_eligibility_part_three.py +8 -8
  199. meta_screening/eligibility/eligibility_part_three/eligibility_part_three_phase_three.py +13 -14
  200. meta_screening/form_validators/__init__.py +8 -0
  201. meta_screening/forms/__init__.py +20 -0
  202. meta_screening/forms/field_lists.py +16 -17
  203. meta_screening/forms/screening_part_one_form.py +2 -2
  204. meta_screening/forms/screening_part_three_form.py +5 -3
  205. meta_screening/forms/screening_part_two_form.py +1 -5
  206. meta_screening/forms/subject_refusal_form.py +0 -4
  207. meta_screening/forms/subject_screening_form.py +0 -4
  208. meta_screening/migrations/0001_initial.py +15 -15
  209. meta_screening/migrations/0010_auto_20191106_0828.py +5 -5
  210. meta_screening/migrations/0068_alter_historicalscreeningpartone_acute_condition_and_more.py +1579 -0
  211. meta_screening/model_mixins/__init__.py +8 -0
  212. meta_screening/model_mixins/eligibility_model_mixin.py +5 -3
  213. meta_screening/model_mixins/part_one_fields_model_mixin.py +5 -9
  214. meta_screening/model_mixins/part_three_fields_model_mixin.py +5 -6
  215. meta_screening/model_mixins/part_two_fields_model_mixin.py +18 -16
  216. meta_screening/models/__init__.py +9 -0
  217. meta_screening/models/icp_referral.py +5 -5
  218. meta_screening/models/signals.py +10 -11
  219. meta_screening/models/subject_refusal.py +1 -1
  220. meta_screening/models/subject_screening.py +1 -3
  221. meta_subject/action_items.py +13 -15
  222. meta_subject/admin/__init__.py +39 -0
  223. meta_subject/admin/birth_outcome_admin.py +4 -8
  224. meta_subject/admin/blood_results/__init__.py +9 -0
  225. meta_subject/admin/blood_results/blood_results_fbc_admin.py +1 -1
  226. meta_subject/admin/blood_results/blood_results_hba1c_admin.py +1 -1
  227. meta_subject/admin/blood_results/blood_results_ins_admin.py +1 -1
  228. meta_subject/admin/blood_results/blood_results_lft_admin.py +1 -1
  229. meta_subject/admin/blood_results/blood_results_lipids_admin.py +1 -1
  230. meta_subject/admin/blood_results/blood_results_rft_admin.py +3 -5
  231. meta_subject/admin/complications_glycemia_admin.py +1 -1
  232. meta_subject/admin/delivery_admin.py +7 -10
  233. meta_subject/admin/diabetes/__init__.py +2 -0
  234. meta_subject/admin/diabetes/dm_endpoint_admin.py +2 -2
  235. meta_subject/admin/diabetes/dm_followup_admin.py +3 -2
  236. meta_subject/admin/egfr_drop_notification_admin.py +1 -1
  237. meta_subject/admin/followup_examination_admin.py +10 -9
  238. meta_subject/admin/followup_vitals_admin.py +4 -5
  239. meta_subject/admin/glucose_admin.py +2 -4
  240. meta_subject/admin/glucose_fbg_admin.py +1 -3
  241. meta_subject/admin/health_economics/__init__.py +2 -0
  242. meta_subject/admin/health_economics/health_economics_simple_admin.py +1 -1
  243. meta_subject/admin/health_economics/health_economics_update_admin.py +1 -1
  244. meta_subject/admin/hepatitis_test_admin.py +1 -1
  245. meta_subject/admin/list_filters.py +1 -1
  246. meta_subject/admin/mnsi_admin.py +7 -5
  247. meta_subject/admin/other_arv_regimens_admin.py +3 -3
  248. meta_subject/admin/patient_history_admin.py +4 -4
  249. meta_subject/admin/physical_exam_admin.py +1 -1
  250. meta_subject/admin/pregnancy_update_admin.py +1 -1
  251. meta_subject/admin/study_medication_admin.py +8 -15
  252. meta_subject/admin/subject_requisition_admin.py +1 -1
  253. meta_subject/admin/subject_visit_admin.py +1 -1
  254. meta_subject/admin/subject_visit_missed_admin.py +1 -1
  255. meta_subject/admin/urine_dipstick_test_admin.py +1 -1
  256. meta_subject/admin/urine_pregnancy_admin.py +1 -1
  257. meta_subject/baker_recipes.py +15 -15
  258. meta_subject/form_validators/__init__.py +11 -0
  259. meta_subject/form_validators/delivery_form_validator.py +2 -3
  260. meta_subject/form_validators/dm_endpoint_form_validator.py +1 -1
  261. meta_subject/form_validators/dm_followup_form_validator.py +7 -6
  262. meta_subject/form_validators/glucose_form_validator.py +3 -5
  263. meta_subject/forms/__init__.py +41 -0
  264. meta_subject/forms/blood_results/__init__.py +9 -0
  265. meta_subject/forms/blood_results/blood_results_rft_form.py +1 -2
  266. meta_subject/forms/diabetes/__init__.py +2 -0
  267. meta_subject/forms/diabetes/dm_followup_form.py +2 -2
  268. meta_subject/forms/followup_vitals_form.py +3 -8
  269. meta_subject/forms/health_economics/__init__.py +2 -0
  270. meta_subject/forms/next_appointment_form.py +2 -3
  271. meta_subject/forms/slider_widget.py +1 -1
  272. meta_subject/forms/study_medication_form.py +11 -8
  273. meta_subject/management/commands/create_missing_refills.py +3 -3
  274. meta_subject/management/commands/create_missing_rx.py +1 -1
  275. meta_subject/management/commands/missed.py +20 -23
  276. meta_subject/metadata_rules/__init__.py +2 -0
  277. meta_subject/metadata_rules/predicates.py +25 -32
  278. meta_subject/migrations/0001_initial.py +61 -61
  279. meta_subject/migrations/0002_auto_20191021_0353.py +5 -5
  280. meta_subject/migrations/0012_auto_20200118_2334.py +5 -5
  281. meta_subject/migrations/0014_auto_20200120_1622.py +5 -5
  282. meta_subject/migrations/0018_coronakap_historicalcoronakap.py +5 -5
  283. meta_subject/migrations/0033_auto_20200516_2356.py +5 -5
  284. meta_subject/migrations/0038_auto_20200520_0020.py +5 -5
  285. meta_subject/migrations/0040_auto_20200527_2155.py +1 -1
  286. meta_subject/migrations/0045_auto_20200530_1801.py +1 -1
  287. meta_subject/migrations/0051_auto_20200617_2117.py +5 -5
  288. meta_subject/migrations/0063_auto_20210715_0337.py +5 -5
  289. meta_subject/migrations/0066_auto_20210721_0335.py +9 -9
  290. meta_subject/migrations/0067_auto_20210726_0340.py +5 -5
  291. meta_subject/migrations/0068_auto_20210728_1809.py +5 -5
  292. meta_subject/migrations/0072_auto_20210805_1545.py +7 -7
  293. meta_subject/migrations/0073_auto_20210809_0055.py +5 -5
  294. meta_subject/migrations/0077_auto_20210809_2323.py +3 -3
  295. meta_subject/migrations/0082_auto_20210823_1612.py +3 -3
  296. meta_subject/migrations/0083_auto_20210823_1620.py +3 -3
  297. meta_subject/migrations/0088_auto_20210924_0027.py +5 -5
  298. meta_subject/migrations/0090_auto_20210924_0424.py +5 -5
  299. meta_subject/migrations/0093_auto_20211117_0352.py +5 -5
  300. meta_subject/migrations/0095_auto_20220128_1719.py +5 -5
  301. meta_subject/migrations/0098_auto_20220309_2106.py +5 -5
  302. meta_subject/migrations/0101_auto_20220316_2147.py +13 -13
  303. meta_subject/migrations/0115_historicalegfrnotification_egfrnotification.py +5 -13
  304. meta_subject/migrations/0164_dmreferralfollowup_historicaldmreferralfollowup.py +5 -5
  305. meta_subject/migrations/0172_remove_historicalbloodresultsglu_action_item_and_more.py +1 -2
  306. meta_subject/migrations/0177_alter_bloodresultslft_alp_value_and_more.py +1 -2
  307. meta_subject/migrations/0178_historicalhealtheconomicsupdate_and_more.py +5 -14
  308. meta_subject/migrations/0186_healtheconomicsupdate_singleton_field_and_more.py +1 -2
  309. meta_subject/migrations/0187_dmdiagnosis_historicaldmdiagnosis_dmdxresult_and_more.py +5 -14
  310. meta_subject/migrations/0188_historicaldmdxresult_dmdxresult.py +5 -14
  311. meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py +1 -2
  312. meta_subject/migrations/0216_historicalnextappointment_nextappointment.py +5 -6
  313. meta_subject/migrations/0220_historicalbloodresultsgludummy_bloodresultsgludummy.py +5 -14
  314. meta_subject/migrations/0227_alter_followupvitals_waist_circumference_comment_and_more.py +97 -0
  315. meta_subject/migrations/0228_bloodresultshba1c_hba1c_datetime_and_more.py +9297 -0
  316. meta_subject/model_mixins/__init__.py +8 -0
  317. meta_subject/model_mixins/search_slug_model_mixin.py +1 -2
  318. meta_subject/model_mixins/vitals_fields_model_mixin.py +1 -1
  319. meta_subject/models/__init__.py +48 -0
  320. meta_subject/models/birth_outcomes.py +3 -3
  321. meta_subject/models/blood_results/__init__.py +11 -0
  322. meta_subject/models/delivery.py +3 -3
  323. meta_subject/models/diabetes/__init__.py +2 -0
  324. meta_subject/models/diabetes/dm_endpoint.py +4 -4
  325. meta_subject/models/diabetes/dm_followup.py +3 -4
  326. meta_subject/models/diet_and_lifestyle.py +2 -2
  327. meta_subject/models/followup_examination.py +11 -11
  328. meta_subject/models/glucose.py +4 -4
  329. meta_subject/models/glucose_fbg.py +2 -3
  330. meta_subject/models/health_economics/__init__.py +2 -0
  331. meta_subject/models/health_economics/health_economics.py +7 -7
  332. meta_subject/models/health_economics/health_economics_update.py +2 -1
  333. meta_subject/models/hepatitis_test.py +2 -2
  334. meta_subject/models/other_arv_regimens_detail.py +1 -1
  335. meta_subject/models/patient_history.py +5 -6
  336. meta_subject/models/physical_exam.py +2 -2
  337. meta_subject/models/pregnancy_update.py +1 -1
  338. meta_subject/models/signals.py +14 -12
  339. meta_subject/models/subject_visit.py +1 -1
  340. meta_subject/models/urine_dipstick_test.py +1 -1
  341. meta_subject/models/urine_pregnancy.py +1 -1
  342. meta_visit_schedule/visit_schedules/__init__.py +2 -0
  343. meta_visit_schedule/visit_schedules/phase_three/__init__.py +2 -0
  344. meta_visit_schedule/visit_schedules/phase_three/schedule.py +2 -2
  345. meta_visit_schedule/visit_schedules/phase_three/schedule_dm_referral.py +1 -2
  346. meta_visit_schedule/visit_schedules/phase_three/schedule_pregnancy.py +1 -2
  347. meta_ae/tests/holidays.csv +0 -15
  348. meta_ae/tests/tests/test_actions.py +0 -126
  349. meta_ae/tests/urls.py +0 -10
  350. meta_analytics/dataframes/glucose_endpoints/utils.py +0 -0
  351. meta_analytics/notebooks/anu.ipynb +0 -95
  352. meta_analytics/notebooks/appointment_planning.ipynb +0 -329
  353. meta_analytics/notebooks/arvs.ipynb +0 -103
  354. meta_analytics/notebooks/cleaning/__init__.py +0 -0
  355. meta_analytics/notebooks/cleaning/consent_v1_ext.ipynb +0 -227
  356. meta_analytics/notebooks/cleaning/offschedule_eos.ipynb +0 -353
  357. meta_analytics/notebooks/dsmc/renal_dysfunction.ipynb +0 -435
  358. meta_analytics/notebooks/endpoints/meta_endpoints_by_date.ipynb +0 -656
  359. meta_analytics/notebooks/followup_examination.ipynb +0 -141
  360. meta_analytics/notebooks/hba1c.ipynb +0 -136
  361. meta_analytics/notebooks/hiv_regimens.ipynb +0 -429
  362. meta_analytics/notebooks/incidence.ipynb +0 -232
  363. meta_analytics/notebooks/liver.ipynb +0 -389
  364. meta_analytics/notebooks/magreth.ipynb +0 -645
  365. meta_analytics/notebooks/monitoring_report.ipynb +0 -1834
  366. meta_analytics/notebooks/pharmacy.ipynb +0 -1061
  367. meta_analytics/notebooks/pharmacy_stock_202410.ipynb +0 -306
  368. meta_analytics/notebooks/qa.ipynb +0 -273
  369. meta_analytics/notebooks/steering.ipynb +0 -61
  370. meta_analytics/notebooks/undiagnosed/meta3_screening_consort_chart.ipynb +0 -1176
  371. meta_analytics/notebooks/undiagnosed/meta3_screening_undiagnosed.ipynb +0 -519
  372. meta_analytics/notebooks/undiagnosed/meta_screening_table2.ipynb +0 -964
  373. meta_analytics/notebooks/undiagnosed/screen_undiagnosed_or.ipynb +0 -296
  374. meta_analytics/notebooks/undiagnosed/screening.ipynb +0 -273
  375. meta_analytics/notebooks/undiagnosed/screening2.ipynb +0 -958
  376. meta_analytics/notebooks/undiagnosed/screening_undiagnosed_20241002.ipynb +0 -958
  377. meta_analytics/notebooks/ven.ipynb +0 -191
  378. meta_analytics/notebooks/vitals.ipynb +0 -263
  379. meta_analytics/tests/__init__.py +0 -0
  380. meta_analytics/tests/test_endpoints_by_date.py +0 -94
  381. meta_consent/tests/__init__.py +0 -0
  382. meta_consent/tests/holidays.csv +0 -15
  383. meta_consent/tests/tests/__init__.py +0 -0
  384. meta_consent/tests/tests/test_form_validators.py +0 -110
  385. meta_consent/tests/tests/test_subject_consent.py +0 -10
  386. meta_consent/tests/urls.py +0 -17
  387. meta_dashboard/tests/__init__.py +0 -0
  388. meta_dashboard/tests/admin.py +0 -22
  389. meta_dashboard/tests/holidays.csv +0 -15
  390. meta_dashboard/tests/tests/__init__.py +0 -0
  391. meta_dashboard/tests/urls.py +0 -55
  392. meta_edc/tests/__init__.py +0 -0
  393. meta_edc/tests/tests/__init__.py +0 -0
  394. meta_edc/tests/tests/test_endpoints.py +0 -555
  395. meta_edc-1.1.8.dist-info/METADATA +0 -767
  396. meta_edc-1.1.8.dist-info/WHEEL +0 -5
  397. meta_edc-1.1.8.dist-info/licenses/AUTHORS.rst +0 -8
  398. meta_edc-1.1.8.dist-info/top_level.txt +0 -20
  399. meta_labs/tests/__init__.py +0 -0
  400. meta_labs/tests/test_labs.py +0 -27
  401. meta_labs/tests/test_reportables.py +0 -70
  402. meta_labs/tests/urls.py +0 -4
  403. meta_lists/tests/__init__.py +0 -0
  404. meta_lists/tests/test_lists.py +0 -8
  405. meta_pharmacy/notebooks/pharmacy.ipynb +0 -41
  406. meta_prn/tests/__init__.py +0 -0
  407. meta_prn/tests/tests/__init__.py +0 -0
  408. meta_prn/tests/tests/test_actions.py +0 -97
  409. meta_prn/tests/tests/test_dm_referral.py +0 -203
  410. meta_prn/tests/tests/test_eos_events.py +0 -134
  411. meta_prn/tests/tests/test_manager_order.py +0 -14
  412. meta_prn/tests/tests/test_pregnancy_notification.py +0 -93
  413. meta_prn/tests/urls.py +0 -10
  414. meta_rando/tests/__init__.py +0 -0
  415. meta_rando/tests/tests/__init__.py +0 -0
  416. meta_rando/tests/tests/test_randomizers.py +0 -57
  417. meta_reports/tests/__init__.py +0 -0
  418. meta_reports/tests/test_reports.py +0 -35
  419. meta_reports/tests/test_sql_gen.py +0 -5
  420. meta_reports/tests/urls.py +0 -4
  421. meta_screening/offline_models.py +0 -3
  422. meta_screening/tests/__init__.py +0 -0
  423. meta_screening/tests/holidays.csv +0 -15
  424. meta_screening/tests/meta_test_case_mixin.py +0 -234
  425. meta_screening/tests/options.py +0 -127
  426. meta_screening/tests/tests/__init__.py +0 -0
  427. meta_screening/tests/tests/test_forms.py +0 -404
  428. meta_screening/tests/tests/test_screening_part_one.py +0 -108
  429. meta_screening/tests/tests/test_screening_part_three.py +0 -433
  430. meta_screening/tests/tests/test_screening_part_two.py +0 -84
  431. meta_sites/tests/__init__.py +0 -0
  432. meta_sites/tests/test_sites.py +0 -12
  433. meta_sites/tests/urls.py +0 -4
  434. meta_stats/__init__.py +0 -0
  435. meta_stats/incidence.py +0 -16
  436. meta_stats/models.py +0 -0
  437. meta_stats/tests/__init__.py +0 -0
  438. meta_stats/tests/tests/__init__.py +0 -0
  439. meta_stats/tests/tests/test_incidence.py +0 -10
  440. meta_subject/tests/__init__.py +0 -0
  441. meta_subject/tests/holidays.csv +0 -15
  442. meta_subject/tests/tests/__init__.py +0 -0
  443. meta_subject/tests/tests/test_egfr.py +0 -234
  444. meta_subject/tests/tests/test_fixes.py +0 -64
  445. meta_subject/tests/tests/test_followup.py +0 -52
  446. meta_subject/tests/tests/test_manager_order.py +0 -11
  447. meta_subject/tests/tests/test_medication_adherence.py +0 -79
  448. meta_subject/tests/tests/test_metadata_rules.py +0 -135
  449. meta_subject/tests/tests/test_mnsi.py +0 -341
  450. meta_subject/tests/tests/test_next_appointment.py +0 -231
  451. meta_subject/tests/tests/test_patient_history_form.py +0 -74
  452. meta_subject/tests/tests/test_physical_exam.py +0 -84
  453. meta_subject/tests/tests/test_sf12.py +0 -161
  454. meta_subject/tests/tests/test_study_medication.py +0 -229
  455. meta_subject/tests/urls.py +0 -24
  456. meta_visit_schedule/tests/__init__.py +0 -0
  457. meta_visit_schedule/tests/tests/__init__.py +0 -0
  458. meta_visit_schedule/tests/tests/test_schedule.py +0 -181
  459. meta_visit_schedule/tests/urls.py +0 -4
  460. tests/__init__.py +0 -0
  461. tests/etc/randomization_list.csv +0 -241
  462. tests/etc/randomization_list_phase_three.csv +0 -241
  463. tests/etc/user-aes-local.key +0 -0
  464. tests/etc/user-aes-restricted.key +0 -1
  465. tests/etc/user-rsa-local-private.pem +0 -27
  466. tests/etc/user-rsa-local-public.pem +0 -9
  467. tests/etc/user-rsa-restricted-private.pem +0 -27
  468. tests/etc/user-rsa-restricted-public.pem +0 -9
  469. tests/etc/user-salt-local.key +0 -0
  470. tests/etc/user-salt-restricted.key +0 -0
  471. tests/holidays.csv +0 -15
  472. tests/test_settings.py +0 -185
  473. {meta_edc-1.1.8.dist-info → meta_edc-1.1.12.dist-info}/licenses/LICENSE +0 -0
  474. /meta_ae/tests/__init__.py → /meta_subject/management/__init__py.py +0 -0
  475. /meta_ae/tests/tests/__init__.py → /meta_subject/management/commands/__init__py.py +0 -0
tests/test_settings.py DELETED
@@ -1,185 +0,0 @@
1
- #!/usr/bin/env python
2
- import sys
3
- from datetime import datetime
4
- from os.path import join
5
- from pathlib import Path
6
- from zoneinfo import ZoneInfo
7
-
8
- from django.conf import locale
9
- from edc_constants.internationalization import EXTRA_LANG_INFO
10
- from edc_test_settings.default_test_settings import DefaultTestSettings
11
- from multisite import SiteID
12
-
13
- from meta_edc.meta_version import PHASE_THREE
14
-
15
- LANG_INFO = dict(locale.LANG_INFO, **EXTRA_LANG_INFO)
16
- locale.LANG_INFO = LANG_INFO
17
-
18
-
19
- def get_languages():
20
- return [(code, LANG_INFO[code]["name"]) for code in ["sw", "en-gb", "en", "mas"]]
21
-
22
-
23
- app_name = "meta_edc"
24
- base_dir = Path(__file__).parent.parent
25
- project_settings = DefaultTestSettings(
26
- calling_file=__file__,
27
- META_PHASE=PHASE_THREE,
28
- BASE_DIR=base_dir,
29
- APP_NAME=app_name,
30
- ETC_DIR=base_dir / "tests" / "etc",
31
- DJANGO_CRYPTO_FIELDS_KEY_PATH=base_dir / "tests" / "etc",
32
- GIT_DIR=base_dir,
33
- HOLIDAY_FILE=base_dir / "tests" / "holidays.csv",
34
- EDC_RANDOMIZATION_LIST_PATH=base_dir / "tests" / "etc",
35
- SITE_ID=SiteID(default=10),
36
- EDC_SITES_DOMAIN_SUFFIX="meta3.clinicedc.org",
37
- EDC_EGFR_DROP_NOTIFICATION_MODEL="meta_subject.egfrdropnotification",
38
- EDC_RANDOMIZATION_REGISTER_DEFAULT_RANDOMIZER=False,
39
- EDC_MNSI_ABNORMAL_FOOT_APPEARANCE_OBSERVATIONS_MODEL=(
40
- "meta_lists.abnormalfootappearanceobservations"
41
- ),
42
- EDC_QOL_EQ5D3L_MODEL="meta_subject.eq5d3l",
43
- ROOT_URLCONF="meta_edc.urls",
44
- EDC_AUTH_CODENAMES_WARN_ONLY=True,
45
- EDC_DX_REVIEW_LIST_MODEL_APP_LABEL="edc_dx_review",
46
- SENTRY_ENABLED=False,
47
- INDEX_PAGE="localhost:8000",
48
- EXPORT_FOLDER=join(base_dir, "tests", "export"),
49
- SUBJECT_APP_LABEL="meta_subject",
50
- SUBJECT_SCREENING_MODEL="meta_screening.subjectscreening",
51
- SUBJECT_VISIT_MODEL="meta_subject.subjectvisit",
52
- SUBJECT_VISIT_MISSED_MODEL="meta_subject.subjectvisitmissed",
53
- SUBJECT_CONSENT_MODEL="meta_consent.subjectconsentv1",
54
- SUBJECT_REQUISITION_MODEL="meta_subject.subjectrequisition",
55
- EDC_BLOOD_RESULTS_MODEL_APP_LABEL="meta_subject",
56
- DEFENDER_ENABLED=False,
57
- DJANGO_LAB_DASHBOARD_REQUISITION_MODEL="meta_subject.subjectrequisition",
58
- ADVERSE_EVENT_ADMIN_SITE="meta_ae_admin",
59
- EDC_DX_LABELS=dict(hiv="HIV", dm="Diabetes", htn="Hypertension", chol="High Cholesterol"),
60
- ADVERSE_EVENT_APP_LABEL="meta_ae",
61
- EDC_NAVBAR_DEFAULT="meta_dashboard",
62
- EDC_PROTOCOL_STUDY_OPEN_DATETIME=datetime(2019, 4, 30, 0, 0, 0, tzinfo=ZoneInfo("UTC")),
63
- EDC_PROTOCOL_STUDY_CLOSE_DATETIME=datetime(
64
- 2025, 12, 31, 23, 59, 59, tzinfo=ZoneInfo("UTC")
65
- ),
66
- LANGUAGE_CODE="en",
67
- LANGUAGES=get_languages(),
68
- DASHBOARD_BASE_TEMPLATES=dict(
69
- edc_base_template="edc_dashboard/base.html",
70
- listboard_base_template="meta_edc/base.html",
71
- dashboard_base_template="meta_edc/base.html",
72
- screening_listboard_template="meta_dashboard/screening/listboard.html",
73
- subject_listboard_template="meta_dashboard/subject/listboard.html",
74
- subject_dashboard_template="meta_dashboard/subject/dashboard.html",
75
- subject_review_listboard_template="edc_review_dashboard/subject_review_listboard.html",
76
- ),
77
- EMAIL_BACKEND="django.core.mail.backends.locmem.EmailBackend",
78
- EMAIL_CONTACTS={
79
- "ae_reports": "someone@example.com",
80
- "data_request": "someone@example.com",
81
- "data_manager": "someone@example.com",
82
- "tmg": "someone@example.com",
83
- },
84
- EMAIL_ENABLED=True,
85
- LIVE_SYSTEM=False,
86
- EDC_SITES_MODULE_NAME="meta_sites",
87
- EDC_AUTH_SKIP_SITE_AUTHS=True,
88
- EDC_AUTH_SKIP_AUTH_UPDATER=True,
89
- EDC_MNSI_MODEL="meta_subject.mnsi",
90
- INSTALLED_APPS=[
91
- "django.contrib.admin",
92
- "django.contrib.auth",
93
- "django.contrib.contenttypes",
94
- "django.contrib.sessions",
95
- "django.contrib.messages",
96
- "django.contrib.staticfiles",
97
- "django.contrib.sites",
98
- "django_pylabels.apps.AppConfig",
99
- "django_crypto_fields.apps.AppConfig",
100
- "django_revision.apps.AppConfig",
101
- # "debug_toolbar",
102
- "django_extensions",
103
- "django_db_views",
104
- "logentry_admin",
105
- "simple_history",
106
- "storages",
107
- "edc_pylabels.apps.AppConfig",
108
- "edc_sites.apps.AppConfig",
109
- "edc_action_item.apps.AppConfig",
110
- "edc_adherence.apps.AppConfig",
111
- "edc_adverse_event.apps.AppConfig",
112
- "edc_appointment.apps.AppConfig",
113
- "edc_auth.apps.AppConfig",
114
- "edc_crf.apps.AppConfig",
115
- "edc_he.apps.AppConfig",
116
- "edc_data_manager.apps.AppConfig",
117
- "edc_consent.apps.AppConfig",
118
- "edc_device.apps.AppConfig",
119
- "edc_dashboard.apps.AppConfig",
120
- "edc_egfr.apps.AppConfig",
121
- "edc_export.apps.AppConfig",
122
- "edc_facility.apps.AppConfig",
123
- "edc_fieldsets.apps.AppConfig",
124
- "edc_form_runners.apps.AppConfig",
125
- "edc_form_validators.apps.AppConfig",
126
- "edc_reportable.apps.AppConfig",
127
- "edc_lab.apps.AppConfig",
128
- "edc_lab_dashboard.apps.AppConfig",
129
- "edc_label.apps.AppConfig",
130
- "edc_listboard.apps.AppConfig",
131
- "edc_locator.apps.AppConfig",
132
- "edc_pdf_reports.apps.AppConfig",
133
- "edc_identifier.apps.AppConfig",
134
- "edc_metadata.apps.AppConfig",
135
- "edc_model_admin.apps.AppConfig",
136
- "edc_navbar.apps.AppConfig",
137
- "edc_notification.apps.AppConfig",
138
- "edc_offstudy.apps.AppConfig",
139
- "edc_visit_tracking.apps.AppConfig",
140
- "edc_visit_schedule.apps.AppConfig",
141
- "edc_pdutils.apps.AppConfig",
142
- "edc_protocol.apps.AppConfig",
143
- "edc_protocol_incident.apps.AppConfig",
144
- "edc_prn.apps.AppConfig",
145
- "edc_randomization.apps.AppConfig",
146
- "edc_registration.apps.AppConfig",
147
- "edc_subject_dashboard.apps.AppConfig",
148
- "edc_screening.apps.AppConfig",
149
- "edc_timepoint.apps.AppConfig",
150
- "edc_list_data.apps.AppConfig",
151
- "edc_review_dashboard.apps.AppConfig",
152
- "edc_refusal.apps.AppConfig",
153
- "edc_mnsi.apps.AppConfig",
154
- "edc_unblinding.apps.AppConfig",
155
- "edc_qareports.apps.AppConfig",
156
- "edc_qol.apps.AppConfig",
157
- "edc_dx_review.apps.AppConfig",
158
- "edc_dx.apps.AppConfig",
159
- "edc_pharmacy.apps.AppConfig",
160
- "meta_auth.apps.AppConfig",
161
- "meta_consent.apps.AppConfig",
162
- "meta_lists.apps.AppConfig",
163
- "meta_dashboard.apps.AppConfig",
164
- "meta_labs.apps.AppConfig",
165
- "meta_rando.apps.AppConfig",
166
- "meta_subject.apps.AppConfig",
167
- "meta_visit_schedule.apps.AppConfig",
168
- "meta_ae.apps.AppConfig",
169
- "meta_prn.apps.AppConfig",
170
- "meta_export.apps.AppConfig",
171
- "meta_sites.apps.AppConfig",
172
- "meta_screening.apps.AppConfig",
173
- "meta_reports.apps.AppConfig",
174
- "meta_pharmacy.apps.AppConfig",
175
- "meta_edc.apps.AppConfig",
176
- "edc_appconfig.apps.AppConfig",
177
- ],
178
- EDC_SITES_CREATE_DEFAULT=False,
179
- add_dashboard_middleware=True,
180
- add_lab_dashboard_middleware=True,
181
- add_adverse_event_dashboard_middleware=True,
182
- ).settings
183
-
184
- for k, v in project_settings.items():
185
- setattr(sys.modules[__name__], k, v)