meta-edc 1.1.8__py3-none-any.whl → 1.1.12__py3-none-any.whl

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  1. meta_ae/action_items.py +2 -1
  2. meta_ae/admin/__init__.py +11 -0
  3. meta_ae/admin/ae_susar_admin.py +1 -1
  4. meta_ae/admin/death_report_admin.py +1 -1
  5. meta_ae/admin/modeladmin_mixins.py +10 -12
  6. meta_ae/baker_recipes.py +3 -3
  7. meta_ae/forms/__init__.py +13 -0
  8. meta_ae/forms/modelform_mixins.py +2 -2
  9. meta_ae/migrations/0001_initial.py +27 -27
  10. meta_ae/migrations/0006_aelocalreview_aesponsorreview.py +5 -5
  11. meta_ae/migrations/0022_historicalhospitalization_hospitalization.py +5 -13
  12. meta_ae/migrations/0023_alter_aefollowup_action_identifier_and_more.py +2017 -0
  13. meta_ae/model_mixins/__init__.py +2 -0
  14. meta_ae/model_mixins/ae_review_model_mixin.py +6 -6
  15. meta_ae/model_mixins/death_report_model_mixin.py +3 -3
  16. meta_ae/models/__init__.py +13 -0
  17. meta_ae/models/hospitalization.py +3 -3
  18. meta_ae/pdf_reports/__init__.py +2 -0
  19. meta_analytics/.DS_Store +0 -0
  20. meta_analytics/dataframes/__init__.py +24 -0
  21. meta_analytics/dataframes/get_eos_df.py +1 -2
  22. meta_analytics/dataframes/get_glucose_df.py +6 -7
  23. meta_analytics/dataframes/get_glucose_fbg_df.py +2 -3
  24. meta_analytics/dataframes/get_glucose_fbg_ogtt_df.py +1 -2
  25. meta_analytics/dataframes/get_last_imp_visits_df.py +5 -6
  26. meta_analytics/dataframes/glucose_endpoints/__init__.py +2 -0
  27. meta_analytics/dataframes/glucose_endpoints/endpoint_by_date.py +13 -20
  28. meta_analytics/dataframes/glucose_endpoints/glucose_endpoints_by_date.py +9 -10
  29. meta_analytics/dataframes/screening/__init__.py +2 -0
  30. meta_analytics/dataframes/screening/get_glucose_tested_only_df.py +1 -2
  31. meta_analytics/dataframes/screening/get_screening_df.py +6 -10
  32. meta_analytics/dataframes/utils.py +3 -8
  33. meta_analytics/get_tables.py +1 -2
  34. meta_analytics/tables/__init__.py +2 -0
  35. meta_consent/action_items.py +2 -1
  36. meta_consent/admin/__init__.py +6 -0
  37. meta_consent/admin/actions/__init__.py +2 -0
  38. meta_consent/admin/actions/create_missing_prescriptions.py +1 -1
  39. meta_consent/admin/list_filters.py +2 -2
  40. meta_consent/admin/modeladmin_mixins.py +3 -4
  41. meta_consent/admin/subject_consent_v1_ext_admin.py +2 -2
  42. meta_consent/baker_recipes.py +7 -8
  43. meta_consent/form_validators/__init__.py +2 -0
  44. meta_consent/forms/__init__.py +7 -0
  45. meta_consent/forms/subject_consent_v1_ext_form.py +2 -3
  46. meta_consent/forms/subject_reconsent_form.py +4 -4
  47. meta_consent/management/commands/create_missing_prescriptions.py +4 -2
  48. meta_consent/migrations/0001_initial.py +9 -9
  49. meta_consent/migrations/0024_historicalsubjectconsentv1.py +3 -8
  50. meta_consent/migrations/0026_historicalsubjectconsentv1ext_subjectconsentv1ext.py +5 -14
  51. meta_consent/migrations/0032_alter_historicalsubjectconsent_device_created_and_more.py +678 -0
  52. meta_consent/models/__init__.py +9 -0
  53. meta_consent/models/model_mixins.py +1 -2
  54. meta_consent/models/signals.py +9 -10
  55. meta_consent/models/subject_consent.py +1 -1
  56. meta_consent/models/subject_reconsent.py +3 -3
  57. meta_dashboard/patterns.py +1 -1
  58. meta_dashboard/templatetags/meta_dashboard_extras.py +1 -1
  59. meta_dashboard/view_utils/__init__.py +7 -0
  60. meta_dashboard/view_utils/subject_screening_button.py +9 -16
  61. meta_dashboard/views/__init__.py +8 -0
  62. meta_dashboard/views/ae/__init__.py +2 -0
  63. meta_dashboard/views/ae/ae_listboard_view.py +1 -1
  64. meta_dashboard/views/ae/death_report_listboard_view.py +1 -1
  65. meta_dashboard/views/screening/__init__.py +2 -0
  66. meta_dashboard/views/subject/__init__.py +2 -0
  67. meta_dashboard/views/subject/dashboard/__init__.py +2 -0
  68. meta_dashboard/views/subject/dashboard/dashboard_view.py +1 -1
  69. meta_dashboard/views/subject/listboard/__init__.py +2 -0
  70. meta_edc/__init__.py +5 -9
  71. meta_edc/celery.py +1 -1
  72. meta_edc/celery_live.py +1 -1
  73. meta_edc/celery_uat.py +1 -1
  74. meta_edc/management/commands/update_forms_reference.py +10 -12
  75. meta_edc/settings/debug.py +5 -4
  76. meta_edc/settings/defaults.py +18 -3
  77. meta_edc/settings/live.py +3 -1
  78. meta_edc/settings/logging.py +9 -4
  79. meta_edc/settings/minimal.py +4 -5
  80. meta_edc/settings/uat.py +3 -1
  81. meta_edc/views/__init__.py +2 -0
  82. meta_edc-1.1.12.dist-info/METADATA +174 -0
  83. {meta_edc-1.1.8.dist-info → meta_edc-1.1.12.dist-info}/RECORD +413 -526
  84. meta_edc-1.1.12.dist-info/WHEEL +4 -0
  85. meta_lists/migrations/0020_alter_abnormalfootappearanceobservations_extra_value_and_more.py +404 -0
  86. meta_pharmacy/admin/__init__.py +5 -0
  87. meta_pharmacy/admin/substitutions_admin.py +2 -2
  88. meta_pharmacy/forms/__init__.py +2 -0
  89. meta_pharmacy/forms/substitutions_form.py +6 -4
  90. meta_pharmacy/labels/__init__.py +4 -2
  91. meta_pharmacy/labels/draw_label_for_subject_with_barcode.py +1 -2
  92. meta_pharmacy/labels/draw_label_with_test_data.py +2 -2
  93. meta_pharmacy/labels/label_data.py +1 -2
  94. meta_pharmacy/labels/print_sheets.py +4 -6
  95. meta_pharmacy/migrations/0002_initial.py +7 -20
  96. meta_pharmacy/migrations/0003_auto_20240909_2335.py +3 -2
  97. meta_pharmacy/migrations/0006_lotnumber_label.py +5 -14
  98. meta_pharmacy/migrations/0008_remove_lotnumber_medication_and_more.py +5 -6
  99. meta_pharmacy/migrations/0010_alter_historicallabeldata_device_created_and_more.py +382 -0
  100. meta_pharmacy/models/__init__.py +7 -0
  101. meta_pharmacy/models/label_data.py +4 -5
  102. meta_pharmacy/models/substitutions.py +3 -3
  103. meta_pharmacy/prepare_meta_pharmacy.py +1 -1
  104. meta_pharmacy/utils/__init__.py +2 -0
  105. meta_pharmacy/utils/update_initial_pharmacy_data.py +1 -1
  106. meta_prn/admin/__init__.py +16 -0
  107. meta_prn/admin/dm_referral_admin.py +2 -1
  108. meta_prn/admin/end_of_study_admin.py +6 -7
  109. meta_prn/admin/loss_to_followup_admin.py +3 -2
  110. meta_prn/admin/off_study_medication_admin.py +5 -6
  111. meta_prn/admin/offschedule_admin.py +5 -6
  112. meta_prn/admin/offschedule_dm_referral_admin.py +6 -6
  113. meta_prn/admin/offschedule_postnatal_admin.py +7 -7
  114. meta_prn/admin/offschedule_pregnancy_admin.py +8 -7
  115. meta_prn/admin/onschedule_admin.py +7 -8
  116. meta_prn/admin/onschedule_dm_referral_admin.py +6 -7
  117. meta_prn/admin/pregnancy_notification_admin.py +5 -6
  118. meta_prn/admin/protocol_incident_admin.py +1 -1
  119. meta_prn/admin/subject_transfer_admin.py +1 -1
  120. meta_prn/baker_recipes.py +4 -4
  121. meta_prn/form_validators/__init__.py +5 -0
  122. meta_prn/form_validators/end_of_study.py +2 -2
  123. meta_prn/forms/__init__.py +13 -0
  124. meta_prn/migrations/0001_initial.py +25 -25
  125. meta_prn/migrations/0017_auto_20220307_1929.py +5 -5
  126. meta_prn/migrations/0018_auto_20220309_2106.py +9 -9
  127. meta_prn/migrations/0021_auto_20220316_2147.py +13 -13
  128. meta_prn/migrations/0022_auto_20220318_0133.py +9 -9
  129. meta_prn/migrations/0032_historicalegfrnotification_egfrnotification.py +5 -13
  130. meta_prn/migrations/0038_alter_endofstudy_delivery_date_and_more.py +5 -13
  131. meta_prn/migrations/0041_endofstudy_transfer_date_and_more.py +5 -13
  132. meta_prn/migrations/0057_historicalonscheduledmreferral_and_more.py +13 -38
  133. meta_prn/migrations/0067_alter_offschedule_managers_and_more.py +2557 -0
  134. meta_prn/models/__init__.py +20 -0
  135. meta_prn/models/offschedule.py +4 -4
  136. meta_prn/models/protocol_incident.py +1 -1
  137. meta_prn/models/subject_transfer.py +8 -0
  138. meta_rando/migrations/0001_initial.py +5 -5
  139. meta_rando/migrations/0006_alter_historicalrandomizationlist_allocated_user_and_more.py +130 -0
  140. meta_reports/__init__.py +2 -0
  141. meta_reports/admin/__init__.py +16 -0
  142. meta_reports/admin/dbviews/__init__.py +13 -0
  143. meta_reports/admin/dbviews/glucose_summary_admin.py +6 -6
  144. meta_reports/admin/dbviews/imp_substitutions_admin.py +12 -11
  145. meta_reports/admin/dbviews/missing_screening_ogtt_admin/__init__.py +5 -0
  146. meta_reports/admin/dbviews/missing_screening_ogtt_admin/note_model_admin.py +27 -3
  147. meta_reports/admin/dbviews/missing_screening_ogtt_admin/unmanaged_model_admin.py +6 -6
  148. meta_reports/admin/dbviews/on_study_missing_lab_values_admin/__init__.py +2 -0
  149. meta_reports/admin/dbviews/on_study_missing_lab_values_admin/unmanaged_model_admin.py +0 -3
  150. meta_reports/admin/dbviews/on_study_missing_values_admin/__init__.py +2 -0
  151. meta_reports/admin/dbviews/patient_history_missing_baseline_cd4_admin.py +8 -8
  152. meta_reports/admin/dbviews/unattended_three_in_row2_admin.py +6 -6
  153. meta_reports/admin/dbviews/unattended_three_in_row_admin.py +5 -5
  154. meta_reports/admin/dbviews/unattended_two_in_row_admin.py +5 -5
  155. meta_reports/admin/endpoints_admin.py +1 -1
  156. meta_reports/admin/last_imp_refill_admin.py +9 -9
  157. meta_reports/admin/list_filters.py +2 -2
  158. meta_reports/admin/modeladmin_mixins.py +9 -16
  159. meta_reports/death_report.py +1 -1
  160. meta_reports/forms/__init__.py +2 -0
  161. meta_reports/forms/missing_ogtt_note_form.py +2 -3
  162. meta_reports/management/commands/generate_endpoints.py +5 -4
  163. meta_reports/migrations/0035_historicalmissingogttnote_missingogttnote.py +5 -14
  164. meta_reports/migrations/0059_alter_endpoints_created_and_more.py +161 -0
  165. meta_reports/models/__init__.py +17 -0
  166. meta_reports/models/dbviews/__init__.py +14 -0
  167. meta_reports/models/dbviews/glucose_summary/__init__.py +2 -0
  168. meta_reports/models/dbviews/glucose_summary/unmanaged_model.py +4 -5
  169. meta_reports/models/dbviews/imp_substitutions/__init__.py +2 -0
  170. meta_reports/models/dbviews/imp_substitutions/view_definition.py +1 -1
  171. meta_reports/models/dbviews/missing_screening_ogtt/__init__.py +2 -0
  172. meta_reports/models/dbviews/missing_screening_ogtt/note_model.py +1 -1
  173. meta_reports/models/dbviews/missing_screening_ogtt/unmanaged_model.py +4 -3
  174. meta_reports/models/dbviews/on_study_missing_lab_values/__init__.py +2 -0
  175. meta_reports/models/dbviews/on_study_missing_lab_values/qa_cases.py +13 -11
  176. meta_reports/models/dbviews/on_study_missing_values/__init__.py +2 -0
  177. meta_reports/models/dbviews/on_study_missing_values/qa_cases.py +18 -0
  178. meta_reports/models/dbviews/patient_history_missing_baseline_cd4/__init__.py +2 -0
  179. meta_reports/models/dbviews/unattended_three_in_row/__init__.py +2 -0
  180. meta_reports/models/dbviews/unattended_three_in_row2/__init__.py +2 -0
  181. meta_reports/models/dbviews/unattended_two_in_row/__init__.py +2 -0
  182. meta_reports/models/endpoints.py +4 -4
  183. meta_reports/models/last_imp_refill.py +2 -3
  184. meta_reports/pdf_report.py +2 -2
  185. meta_reports/tasks.py +1 -1
  186. meta_screening/admin/__init__.py +8 -0
  187. meta_screening/admin/fieldsets.py +13 -14
  188. meta_screening/admin/list_filters.py +6 -4
  189. meta_screening/admin/screening_part_one_admin.py +1 -2
  190. meta_screening/admin/screening_part_three_admin.py +2 -3
  191. meta_screening/admin/screening_part_two_admin.py +7 -10
  192. meta_screening/admin/subject_refusal_admin.py +5 -3
  193. meta_screening/admin/subject_screening_admin.py +4 -4
  194. meta_screening/baker_recipes.py +9 -9
  195. meta_screening/eligibility/__init__.py +9 -0
  196. meta_screening/eligibility/eligibility.py +7 -7
  197. meta_screening/eligibility/eligibility_part_three/__init__.py +2 -0
  198. meta_screening/eligibility/eligibility_part_three/base_eligibility_part_three.py +8 -8
  199. meta_screening/eligibility/eligibility_part_three/eligibility_part_three_phase_three.py +13 -14
  200. meta_screening/form_validators/__init__.py +8 -0
  201. meta_screening/forms/__init__.py +20 -0
  202. meta_screening/forms/field_lists.py +16 -17
  203. meta_screening/forms/screening_part_one_form.py +2 -2
  204. meta_screening/forms/screening_part_three_form.py +5 -3
  205. meta_screening/forms/screening_part_two_form.py +1 -5
  206. meta_screening/forms/subject_refusal_form.py +0 -4
  207. meta_screening/forms/subject_screening_form.py +0 -4
  208. meta_screening/migrations/0001_initial.py +15 -15
  209. meta_screening/migrations/0010_auto_20191106_0828.py +5 -5
  210. meta_screening/migrations/0068_alter_historicalscreeningpartone_acute_condition_and_more.py +1579 -0
  211. meta_screening/model_mixins/__init__.py +8 -0
  212. meta_screening/model_mixins/eligibility_model_mixin.py +5 -3
  213. meta_screening/model_mixins/part_one_fields_model_mixin.py +5 -9
  214. meta_screening/model_mixins/part_three_fields_model_mixin.py +5 -6
  215. meta_screening/model_mixins/part_two_fields_model_mixin.py +18 -16
  216. meta_screening/models/__init__.py +9 -0
  217. meta_screening/models/icp_referral.py +5 -5
  218. meta_screening/models/signals.py +10 -11
  219. meta_screening/models/subject_refusal.py +1 -1
  220. meta_screening/models/subject_screening.py +1 -3
  221. meta_subject/action_items.py +13 -15
  222. meta_subject/admin/__init__.py +39 -0
  223. meta_subject/admin/birth_outcome_admin.py +4 -8
  224. meta_subject/admin/blood_results/__init__.py +9 -0
  225. meta_subject/admin/blood_results/blood_results_fbc_admin.py +1 -1
  226. meta_subject/admin/blood_results/blood_results_hba1c_admin.py +1 -1
  227. meta_subject/admin/blood_results/blood_results_ins_admin.py +1 -1
  228. meta_subject/admin/blood_results/blood_results_lft_admin.py +1 -1
  229. meta_subject/admin/blood_results/blood_results_lipids_admin.py +1 -1
  230. meta_subject/admin/blood_results/blood_results_rft_admin.py +3 -5
  231. meta_subject/admin/complications_glycemia_admin.py +1 -1
  232. meta_subject/admin/delivery_admin.py +7 -10
  233. meta_subject/admin/diabetes/__init__.py +2 -0
  234. meta_subject/admin/diabetes/dm_endpoint_admin.py +2 -2
  235. meta_subject/admin/diabetes/dm_followup_admin.py +3 -2
  236. meta_subject/admin/egfr_drop_notification_admin.py +1 -1
  237. meta_subject/admin/followup_examination_admin.py +10 -9
  238. meta_subject/admin/followup_vitals_admin.py +4 -5
  239. meta_subject/admin/glucose_admin.py +2 -4
  240. meta_subject/admin/glucose_fbg_admin.py +1 -3
  241. meta_subject/admin/health_economics/__init__.py +2 -0
  242. meta_subject/admin/health_economics/health_economics_simple_admin.py +1 -1
  243. meta_subject/admin/health_economics/health_economics_update_admin.py +1 -1
  244. meta_subject/admin/hepatitis_test_admin.py +1 -1
  245. meta_subject/admin/list_filters.py +1 -1
  246. meta_subject/admin/mnsi_admin.py +7 -5
  247. meta_subject/admin/other_arv_regimens_admin.py +3 -3
  248. meta_subject/admin/patient_history_admin.py +4 -4
  249. meta_subject/admin/physical_exam_admin.py +1 -1
  250. meta_subject/admin/pregnancy_update_admin.py +1 -1
  251. meta_subject/admin/study_medication_admin.py +8 -15
  252. meta_subject/admin/subject_requisition_admin.py +1 -1
  253. meta_subject/admin/subject_visit_admin.py +1 -1
  254. meta_subject/admin/subject_visit_missed_admin.py +1 -1
  255. meta_subject/admin/urine_dipstick_test_admin.py +1 -1
  256. meta_subject/admin/urine_pregnancy_admin.py +1 -1
  257. meta_subject/baker_recipes.py +15 -15
  258. meta_subject/form_validators/__init__.py +11 -0
  259. meta_subject/form_validators/delivery_form_validator.py +2 -3
  260. meta_subject/form_validators/dm_endpoint_form_validator.py +1 -1
  261. meta_subject/form_validators/dm_followup_form_validator.py +7 -6
  262. meta_subject/form_validators/glucose_form_validator.py +3 -5
  263. meta_subject/forms/__init__.py +41 -0
  264. meta_subject/forms/blood_results/__init__.py +9 -0
  265. meta_subject/forms/blood_results/blood_results_rft_form.py +1 -2
  266. meta_subject/forms/diabetes/__init__.py +2 -0
  267. meta_subject/forms/diabetes/dm_followup_form.py +2 -2
  268. meta_subject/forms/followup_vitals_form.py +3 -8
  269. meta_subject/forms/health_economics/__init__.py +2 -0
  270. meta_subject/forms/next_appointment_form.py +2 -3
  271. meta_subject/forms/slider_widget.py +1 -1
  272. meta_subject/forms/study_medication_form.py +11 -8
  273. meta_subject/management/commands/create_missing_refills.py +3 -3
  274. meta_subject/management/commands/create_missing_rx.py +1 -1
  275. meta_subject/management/commands/missed.py +20 -23
  276. meta_subject/metadata_rules/__init__.py +2 -0
  277. meta_subject/metadata_rules/predicates.py +25 -32
  278. meta_subject/migrations/0001_initial.py +61 -61
  279. meta_subject/migrations/0002_auto_20191021_0353.py +5 -5
  280. meta_subject/migrations/0012_auto_20200118_2334.py +5 -5
  281. meta_subject/migrations/0014_auto_20200120_1622.py +5 -5
  282. meta_subject/migrations/0018_coronakap_historicalcoronakap.py +5 -5
  283. meta_subject/migrations/0033_auto_20200516_2356.py +5 -5
  284. meta_subject/migrations/0038_auto_20200520_0020.py +5 -5
  285. meta_subject/migrations/0040_auto_20200527_2155.py +1 -1
  286. meta_subject/migrations/0045_auto_20200530_1801.py +1 -1
  287. meta_subject/migrations/0051_auto_20200617_2117.py +5 -5
  288. meta_subject/migrations/0063_auto_20210715_0337.py +5 -5
  289. meta_subject/migrations/0066_auto_20210721_0335.py +9 -9
  290. meta_subject/migrations/0067_auto_20210726_0340.py +5 -5
  291. meta_subject/migrations/0068_auto_20210728_1809.py +5 -5
  292. meta_subject/migrations/0072_auto_20210805_1545.py +7 -7
  293. meta_subject/migrations/0073_auto_20210809_0055.py +5 -5
  294. meta_subject/migrations/0077_auto_20210809_2323.py +3 -3
  295. meta_subject/migrations/0082_auto_20210823_1612.py +3 -3
  296. meta_subject/migrations/0083_auto_20210823_1620.py +3 -3
  297. meta_subject/migrations/0088_auto_20210924_0027.py +5 -5
  298. meta_subject/migrations/0090_auto_20210924_0424.py +5 -5
  299. meta_subject/migrations/0093_auto_20211117_0352.py +5 -5
  300. meta_subject/migrations/0095_auto_20220128_1719.py +5 -5
  301. meta_subject/migrations/0098_auto_20220309_2106.py +5 -5
  302. meta_subject/migrations/0101_auto_20220316_2147.py +13 -13
  303. meta_subject/migrations/0115_historicalegfrnotification_egfrnotification.py +5 -13
  304. meta_subject/migrations/0164_dmreferralfollowup_historicaldmreferralfollowup.py +5 -5
  305. meta_subject/migrations/0172_remove_historicalbloodresultsglu_action_item_and_more.py +1 -2
  306. meta_subject/migrations/0177_alter_bloodresultslft_alp_value_and_more.py +1 -2
  307. meta_subject/migrations/0178_historicalhealtheconomicsupdate_and_more.py +5 -14
  308. meta_subject/migrations/0186_healtheconomicsupdate_singleton_field_and_more.py +1 -2
  309. meta_subject/migrations/0187_dmdiagnosis_historicaldmdiagnosis_dmdxresult_and_more.py +5 -14
  310. meta_subject/migrations/0188_historicaldmdxresult_dmdxresult.py +5 -14
  311. meta_subject/migrations/0209_remove_historicaldmdxresult_dm_diagnosis_and_more.py +1 -2
  312. meta_subject/migrations/0216_historicalnextappointment_nextappointment.py +5 -6
  313. meta_subject/migrations/0220_historicalbloodresultsgludummy_bloodresultsgludummy.py +5 -14
  314. meta_subject/migrations/0227_alter_followupvitals_waist_circumference_comment_and_more.py +97 -0
  315. meta_subject/migrations/0228_bloodresultshba1c_hba1c_datetime_and_more.py +9297 -0
  316. meta_subject/model_mixins/__init__.py +8 -0
  317. meta_subject/model_mixins/search_slug_model_mixin.py +1 -2
  318. meta_subject/model_mixins/vitals_fields_model_mixin.py +1 -1
  319. meta_subject/models/__init__.py +48 -0
  320. meta_subject/models/birth_outcomes.py +3 -3
  321. meta_subject/models/blood_results/__init__.py +11 -0
  322. meta_subject/models/delivery.py +3 -3
  323. meta_subject/models/diabetes/__init__.py +2 -0
  324. meta_subject/models/diabetes/dm_endpoint.py +4 -4
  325. meta_subject/models/diabetes/dm_followup.py +3 -4
  326. meta_subject/models/diet_and_lifestyle.py +2 -2
  327. meta_subject/models/followup_examination.py +11 -11
  328. meta_subject/models/glucose.py +4 -4
  329. meta_subject/models/glucose_fbg.py +2 -3
  330. meta_subject/models/health_economics/__init__.py +2 -0
  331. meta_subject/models/health_economics/health_economics.py +7 -7
  332. meta_subject/models/health_economics/health_economics_update.py +2 -1
  333. meta_subject/models/hepatitis_test.py +2 -2
  334. meta_subject/models/other_arv_regimens_detail.py +1 -1
  335. meta_subject/models/patient_history.py +5 -6
  336. meta_subject/models/physical_exam.py +2 -2
  337. meta_subject/models/pregnancy_update.py +1 -1
  338. meta_subject/models/signals.py +14 -12
  339. meta_subject/models/subject_visit.py +1 -1
  340. meta_subject/models/urine_dipstick_test.py +1 -1
  341. meta_subject/models/urine_pregnancy.py +1 -1
  342. meta_visit_schedule/visit_schedules/__init__.py +2 -0
  343. meta_visit_schedule/visit_schedules/phase_three/__init__.py +2 -0
  344. meta_visit_schedule/visit_schedules/phase_three/schedule.py +2 -2
  345. meta_visit_schedule/visit_schedules/phase_three/schedule_dm_referral.py +1 -2
  346. meta_visit_schedule/visit_schedules/phase_three/schedule_pregnancy.py +1 -2
  347. meta_ae/tests/holidays.csv +0 -15
  348. meta_ae/tests/tests/test_actions.py +0 -126
  349. meta_ae/tests/urls.py +0 -10
  350. meta_analytics/dataframes/glucose_endpoints/utils.py +0 -0
  351. meta_analytics/notebooks/anu.ipynb +0 -95
  352. meta_analytics/notebooks/appointment_planning.ipynb +0 -329
  353. meta_analytics/notebooks/arvs.ipynb +0 -103
  354. meta_analytics/notebooks/cleaning/__init__.py +0 -0
  355. meta_analytics/notebooks/cleaning/consent_v1_ext.ipynb +0 -227
  356. meta_analytics/notebooks/cleaning/offschedule_eos.ipynb +0 -353
  357. meta_analytics/notebooks/dsmc/renal_dysfunction.ipynb +0 -435
  358. meta_analytics/notebooks/endpoints/meta_endpoints_by_date.ipynb +0 -656
  359. meta_analytics/notebooks/followup_examination.ipynb +0 -141
  360. meta_analytics/notebooks/hba1c.ipynb +0 -136
  361. meta_analytics/notebooks/hiv_regimens.ipynb +0 -429
  362. meta_analytics/notebooks/incidence.ipynb +0 -232
  363. meta_analytics/notebooks/liver.ipynb +0 -389
  364. meta_analytics/notebooks/magreth.ipynb +0 -645
  365. meta_analytics/notebooks/monitoring_report.ipynb +0 -1834
  366. meta_analytics/notebooks/pharmacy.ipynb +0 -1061
  367. meta_analytics/notebooks/pharmacy_stock_202410.ipynb +0 -306
  368. meta_analytics/notebooks/qa.ipynb +0 -273
  369. meta_analytics/notebooks/steering.ipynb +0 -61
  370. meta_analytics/notebooks/undiagnosed/meta3_screening_consort_chart.ipynb +0 -1176
  371. meta_analytics/notebooks/undiagnosed/meta3_screening_undiagnosed.ipynb +0 -519
  372. meta_analytics/notebooks/undiagnosed/meta_screening_table2.ipynb +0 -964
  373. meta_analytics/notebooks/undiagnosed/screen_undiagnosed_or.ipynb +0 -296
  374. meta_analytics/notebooks/undiagnosed/screening.ipynb +0 -273
  375. meta_analytics/notebooks/undiagnosed/screening2.ipynb +0 -958
  376. meta_analytics/notebooks/undiagnosed/screening_undiagnosed_20241002.ipynb +0 -958
  377. meta_analytics/notebooks/ven.ipynb +0 -191
  378. meta_analytics/notebooks/vitals.ipynb +0 -263
  379. meta_analytics/tests/__init__.py +0 -0
  380. meta_analytics/tests/test_endpoints_by_date.py +0 -94
  381. meta_consent/tests/__init__.py +0 -0
  382. meta_consent/tests/holidays.csv +0 -15
  383. meta_consent/tests/tests/__init__.py +0 -0
  384. meta_consent/tests/tests/test_form_validators.py +0 -110
  385. meta_consent/tests/tests/test_subject_consent.py +0 -10
  386. meta_consent/tests/urls.py +0 -17
  387. meta_dashboard/tests/__init__.py +0 -0
  388. meta_dashboard/tests/admin.py +0 -22
  389. meta_dashboard/tests/holidays.csv +0 -15
  390. meta_dashboard/tests/tests/__init__.py +0 -0
  391. meta_dashboard/tests/urls.py +0 -55
  392. meta_edc/tests/__init__.py +0 -0
  393. meta_edc/tests/tests/__init__.py +0 -0
  394. meta_edc/tests/tests/test_endpoints.py +0 -555
  395. meta_edc-1.1.8.dist-info/METADATA +0 -767
  396. meta_edc-1.1.8.dist-info/WHEEL +0 -5
  397. meta_edc-1.1.8.dist-info/licenses/AUTHORS.rst +0 -8
  398. meta_edc-1.1.8.dist-info/top_level.txt +0 -20
  399. meta_labs/tests/__init__.py +0 -0
  400. meta_labs/tests/test_labs.py +0 -27
  401. meta_labs/tests/test_reportables.py +0 -70
  402. meta_labs/tests/urls.py +0 -4
  403. meta_lists/tests/__init__.py +0 -0
  404. meta_lists/tests/test_lists.py +0 -8
  405. meta_pharmacy/notebooks/pharmacy.ipynb +0 -41
  406. meta_prn/tests/__init__.py +0 -0
  407. meta_prn/tests/tests/__init__.py +0 -0
  408. meta_prn/tests/tests/test_actions.py +0 -97
  409. meta_prn/tests/tests/test_dm_referral.py +0 -203
  410. meta_prn/tests/tests/test_eos_events.py +0 -134
  411. meta_prn/tests/tests/test_manager_order.py +0 -14
  412. meta_prn/tests/tests/test_pregnancy_notification.py +0 -93
  413. meta_prn/tests/urls.py +0 -10
  414. meta_rando/tests/__init__.py +0 -0
  415. meta_rando/tests/tests/__init__.py +0 -0
  416. meta_rando/tests/tests/test_randomizers.py +0 -57
  417. meta_reports/tests/__init__.py +0 -0
  418. meta_reports/tests/test_reports.py +0 -35
  419. meta_reports/tests/test_sql_gen.py +0 -5
  420. meta_reports/tests/urls.py +0 -4
  421. meta_screening/offline_models.py +0 -3
  422. meta_screening/tests/__init__.py +0 -0
  423. meta_screening/tests/holidays.csv +0 -15
  424. meta_screening/tests/meta_test_case_mixin.py +0 -234
  425. meta_screening/tests/options.py +0 -127
  426. meta_screening/tests/tests/__init__.py +0 -0
  427. meta_screening/tests/tests/test_forms.py +0 -404
  428. meta_screening/tests/tests/test_screening_part_one.py +0 -108
  429. meta_screening/tests/tests/test_screening_part_three.py +0 -433
  430. meta_screening/tests/tests/test_screening_part_two.py +0 -84
  431. meta_sites/tests/__init__.py +0 -0
  432. meta_sites/tests/test_sites.py +0 -12
  433. meta_sites/tests/urls.py +0 -4
  434. meta_stats/__init__.py +0 -0
  435. meta_stats/incidence.py +0 -16
  436. meta_stats/models.py +0 -0
  437. meta_stats/tests/__init__.py +0 -0
  438. meta_stats/tests/tests/__init__.py +0 -0
  439. meta_stats/tests/tests/test_incidence.py +0 -10
  440. meta_subject/tests/__init__.py +0 -0
  441. meta_subject/tests/holidays.csv +0 -15
  442. meta_subject/tests/tests/__init__.py +0 -0
  443. meta_subject/tests/tests/test_egfr.py +0 -234
  444. meta_subject/tests/tests/test_fixes.py +0 -64
  445. meta_subject/tests/tests/test_followup.py +0 -52
  446. meta_subject/tests/tests/test_manager_order.py +0 -11
  447. meta_subject/tests/tests/test_medication_adherence.py +0 -79
  448. meta_subject/tests/tests/test_metadata_rules.py +0 -135
  449. meta_subject/tests/tests/test_mnsi.py +0 -341
  450. meta_subject/tests/tests/test_next_appointment.py +0 -231
  451. meta_subject/tests/tests/test_patient_history_form.py +0 -74
  452. meta_subject/tests/tests/test_physical_exam.py +0 -84
  453. meta_subject/tests/tests/test_sf12.py +0 -161
  454. meta_subject/tests/tests/test_study_medication.py +0 -229
  455. meta_subject/tests/urls.py +0 -24
  456. meta_visit_schedule/tests/__init__.py +0 -0
  457. meta_visit_schedule/tests/tests/__init__.py +0 -0
  458. meta_visit_schedule/tests/tests/test_schedule.py +0 -181
  459. meta_visit_schedule/tests/urls.py +0 -4
  460. tests/__init__.py +0 -0
  461. tests/etc/randomization_list.csv +0 -241
  462. tests/etc/randomization_list_phase_three.csv +0 -241
  463. tests/etc/user-aes-local.key +0 -0
  464. tests/etc/user-aes-restricted.key +0 -1
  465. tests/etc/user-rsa-local-private.pem +0 -27
  466. tests/etc/user-rsa-local-public.pem +0 -9
  467. tests/etc/user-rsa-restricted-private.pem +0 -27
  468. tests/etc/user-rsa-restricted-public.pem +0 -9
  469. tests/etc/user-salt-local.key +0 -0
  470. tests/etc/user-salt-restricted.key +0 -0
  471. tests/holidays.csv +0 -15
  472. tests/test_settings.py +0 -185
  473. {meta_edc-1.1.8.dist-info → meta_edc-1.1.12.dist-info}/licenses/LICENSE +0 -0
  474. /meta_ae/tests/__init__.py → /meta_subject/management/__init__py.py +0 -0
  475. /meta_ae/tests/tests/__init__.py → /meta_subject/management/commands/__init__py.py +0 -0
@@ -1,84 +0,0 @@
1
- from copy import deepcopy
2
-
3
- from django.conf import settings
4
- from django.contrib.sites.models import Site
5
- from django.test import TestCase
6
- from edc_constants.constants import COMPLETE, NO, YES
7
-
8
- from meta_screening.tests.meta_test_case_mixin import MetaTestCaseMixin
9
- from meta_screening.tests.options import now
10
- from meta_subject.forms import PhysicalExamForm
11
-
12
-
13
- class TestPhysicalExam(MetaTestCaseMixin, TestCase):
14
- def setUp(self):
15
- super().setUp()
16
- self.data = {
17
- "abdominal_tenderness": NO,
18
- "dia_blood_pressure": 100,
19
- "abdominal_tenderness_description": None,
20
- "enlarged_liver": YES,
21
- "heart_rate": 40,
22
- "irregular_heartbeat": NO,
23
- "irregular_heartbeat_description": None,
24
- "jaundice": YES,
25
- "oxygen_saturation": 10,
26
- "peripheral_oedema": NO,
27
- "report_datetime": now,
28
- "respiratory_rate": 30,
29
- "sys_blood_pressure": 80,
30
- "temperature": 37,
31
- "waist_circumference": 100,
32
- "weight": 65,
33
- "crf_status": COMPLETE,
34
- "site": Site.objects.get(id=settings.SITE_ID),
35
- }
36
-
37
- self.subject_visit = self.get_subject_visit(appt_datetime=now)
38
-
39
- self.data.update(
40
- subject_visit=self.subject_visit.pk,
41
- report_datetime=self.subject_visit.report_datetime,
42
- )
43
-
44
- def test_ok(self):
45
- form = PhysicalExamForm(data=self.data)
46
- form.is_valid()
47
- self.assertEqual(form._errors, {})
48
-
49
- def test_irregular_heartbeat(self):
50
- data = deepcopy(self.data)
51
- data.update(irregular_heartbeat=YES, irregular_heartbeat_description="blah blah blah")
52
- form = PhysicalExamForm(data=data)
53
- form.is_valid()
54
- self.assertEqual(form._errors, {})
55
-
56
- data.update(irregular_heartbeat=NO, irregular_heartbeat_description="blah blah blah")
57
- form = PhysicalExamForm(data=data)
58
- form.is_valid()
59
- self.assertEqual(
60
- form._errors.get("irregular_heartbeat_description"),
61
- ["This field is not required."],
62
- )
63
-
64
- def test_abdominal_tenderness(self):
65
- data = deepcopy(self.data)
66
- data.update(abdominal_tenderness=NO, abdominal_tenderness_description=None)
67
- form = PhysicalExamForm(data=data)
68
- form.is_valid()
69
- self.assertEqual(form._errors, {})
70
-
71
- data.update(
72
- abdominal_tenderness=YES, abdominal_tenderness_description="blah blah blah"
73
- )
74
- form = PhysicalExamForm(data=data)
75
- form.is_valid()
76
- self.assertEqual(form._errors, {})
77
-
78
- data.update(abdominal_tenderness=NO, abdominal_tenderness_description="blah blah blah")
79
- form = PhysicalExamForm(data=data)
80
- form.is_valid()
81
- self.assertEqual(
82
- form._errors.get("abdominal_tenderness_description"),
83
- ["This field is not required."],
84
- )
@@ -1,161 +0,0 @@
1
- from copy import deepcopy
2
- from datetime import datetime
3
- from zoneinfo import ZoneInfo
4
-
5
- import time_machine
6
- from django.conf import settings
7
- from django.contrib.sites.models import Site
8
- from django.test import TestCase
9
- from edc_constants.constants import COMPLETE, YES
10
- from edc_metadata import KEYED, NOT_REQUIRED, REQUIRED
11
- from edc_metadata.metadata import CrfMetadataGetter
12
- from edc_qol.constants import ALL_OF_THE_TIME, NONE_OF_THE_TIME, SOME_OF_THE_TIME
13
- from edc_visit_schedule.constants import MONTH1, MONTH3, WEEK2
14
-
15
- from meta_screening.tests.meta_test_case_mixin import MetaTestCaseMixin
16
- from meta_screening.tests.options import now
17
- from meta_subject.forms import Sf12Form
18
-
19
-
20
- @time_machine.travel(datetime(2019, 6, 11, 8, 00, tzinfo=ZoneInfo("UTC")))
21
- class TestSf12(MetaTestCaseMixin, TestCase):
22
- def setUp(self):
23
- super().setUp()
24
- self.subject_visit = self.get_subject_visit(appt_datetime=now)
25
- self.data = dict(
26
- subject_visit=self.subject_visit,
27
- report_datetime=self.subject_visit.report_datetime,
28
- general_health="excellent",
29
- moderate_activities_now_limited="limited_a_lot",
30
- climbing_stairs_now_limited="limited_a_lot",
31
- accomplished_less_physical_health=YES,
32
- work_limited_physical_health=YES,
33
- accomplished_less_emotional=YES,
34
- work_less_carefully_emotional=YES,
35
- pain_interfere_work="not_at_all",
36
- felt_calm_peaceful=ALL_OF_THE_TIME,
37
- felt_lot_energy=ALL_OF_THE_TIME,
38
- felt_down=NONE_OF_THE_TIME,
39
- social_activities_interfered=SOME_OF_THE_TIME,
40
- crf_status=COMPLETE,
41
- site=Site.objects.get(id=settings.SITE_ID),
42
- )
43
-
44
- def test_1005_required(self):
45
- subject_visit = self.get_next_subject_visit(self.subject_visit)
46
- self.assertEqual(subject_visit.visit_code, WEEK2)
47
- crf_metadata_getter = CrfMetadataGetter(appointment=subject_visit.appointment)
48
- self.assertTrue(
49
- crf_metadata_getter.metadata_objects.filter(model="meta_subject.sf12").exists()
50
- )
51
- self.assertEqual(
52
- crf_metadata_getter.metadata_objects.get(
53
- model="meta_subject.sf12", visit_code=WEEK2
54
- ).entry_status,
55
- REQUIRED,
56
- )
57
- data = deepcopy(self.data)
58
- data.update(subject_visit=subject_visit, report_datetime=subject_visit.report_datetime)
59
- form = Sf12Form(data=data)
60
- form.is_valid()
61
- self.assertEqual({}, form._errors)
62
- form.save()
63
- self.assertTrue(
64
- crf_metadata_getter.metadata_objects.filter(
65
- model="meta_subject.sf12", entry_status=KEYED
66
- ).exists()
67
- )
68
-
69
- def test_1010_required_if_not_submitted(self):
70
- subject_visit = self.get_next_subject_visit(self.subject_visit)
71
- subject_visit = self.get_next_subject_visit(subject_visit)
72
- self.assertEqual(subject_visit.visit_code, MONTH1)
73
- crf_metadata_getter = CrfMetadataGetter(appointment=subject_visit.appointment)
74
- self.assertTrue(
75
- crf_metadata_getter.metadata_objects.filter(model="meta_subject.sf12").exists()
76
- )
77
- self.assertEqual(
78
- crf_metadata_getter.metadata_objects.get(
79
- model="meta_subject.sf12", visit_code=MONTH1
80
- ).entry_status,
81
- REQUIRED,
82
- )
83
- data = deepcopy(self.data)
84
- data.update(subject_visit=subject_visit, report_datetime=subject_visit.report_datetime)
85
- form = Sf12Form(data=data)
86
- form.is_valid()
87
- self.assertEqual({}, form._errors)
88
- form.save()
89
- self.assertTrue(
90
- crf_metadata_getter.metadata_objects.filter(
91
- model="meta_subject.sf12", entry_status=KEYED
92
- ).exists()
93
- )
94
-
95
- def test_1030_required_if_not_submitted(self):
96
- subject_visit = self.get_next_subject_visit(self.subject_visit)
97
- subject_visit = self.get_next_subject_visit(subject_visit)
98
- subject_visit = self.get_next_subject_visit(subject_visit)
99
- traveller = time_machine.travel(subject_visit.report_datetime)
100
- traveller.start()
101
- self.assertEqual(subject_visit.visit_code, MONTH3)
102
- crf_metadata_getter = CrfMetadataGetter(appointment=subject_visit.appointment)
103
- self.assertTrue(
104
- crf_metadata_getter.metadata_objects.filter(model="meta_subject.sf12").exists()
105
- )
106
- self.assertEqual(
107
- crf_metadata_getter.metadata_objects.get(
108
- model="meta_subject.sf12", visit_code=MONTH3
109
- ).entry_status,
110
- REQUIRED,
111
- )
112
- data = deepcopy(self.data)
113
- data.update(subject_visit=subject_visit, report_datetime=subject_visit.report_datetime)
114
- form = Sf12Form(data=data)
115
- form.is_valid()
116
- self.assertEqual({}, form._errors)
117
- form.save()
118
- self.assertTrue(
119
- crf_metadata_getter.metadata_objects.filter(
120
- model="meta_subject.sf12", entry_status=KEYED
121
- ).exists()
122
- )
123
-
124
- def test_1030_not_required_if_submitted(self):
125
- subject_visit_1005 = self.get_next_subject_visit(self.subject_visit)
126
- subject_visit_1010 = self.get_next_subject_visit(subject_visit_1005)
127
- subject_visit_1030 = self.get_next_subject_visit(subject_visit_1010)
128
- self.assertEqual(subject_visit_1030.visit_code, MONTH3)
129
- crf_metadata_getter = CrfMetadataGetter(appointment=subject_visit_1030.appointment)
130
- self.assertTrue(
131
- crf_metadata_getter.metadata_objects.filter(
132
- model="meta_subject.sf12", entry_status=REQUIRED
133
- ).exists()
134
- )
135
- data = deepcopy(self.data)
136
- data.update(
137
- subject_visit=subject_visit_1010,
138
- report_datetime=subject_visit_1010.report_datetime,
139
- )
140
- form = Sf12Form(data=data)
141
- form.is_valid()
142
- self.assertEqual({}, form._errors)
143
- form.save()
144
- crf_metadata_getter = CrfMetadataGetter(appointment=subject_visit_1005.appointment)
145
- self.assertTrue(
146
- crf_metadata_getter.metadata_objects.filter(
147
- model="meta_subject.sf12", entry_status=NOT_REQUIRED
148
- ).exists()
149
- )
150
- crf_metadata_getter = CrfMetadataGetter(appointment=subject_visit_1010.appointment)
151
- self.assertTrue(
152
- crf_metadata_getter.metadata_objects.filter(
153
- model="meta_subject.sf12", entry_status=KEYED
154
- ).exists()
155
- )
156
- crf_metadata_getter = CrfMetadataGetter(appointment=subject_visit_1030.appointment)
157
- self.assertTrue(
158
- crf_metadata_getter.metadata_objects.filter(
159
- model="meta_subject.sf12", entry_status=NOT_REQUIRED
160
- ).exists()
161
- )
@@ -1,229 +0,0 @@
1
- from dateutil.relativedelta import relativedelta
2
- from django.core.exceptions import ObjectDoesNotExist
3
- from django.test import TestCase
4
- from edc_constants.constants import YES
5
- from edc_pharmacy.exceptions import PrescriptionAlreadyExists, StudyMedicationError
6
- from edc_pharmacy.models import DosageGuideline, Formulation, Medication, RxRefill
7
- from edc_pharmacy.prescribe import create_prescription
8
- from edc_registration.models import RegisteredSubject
9
-
10
- from meta_pharmacy.constants import METFORMIN
11
- from meta_screening.tests.meta_test_case_mixin import MetaTestCaseMixin
12
- from meta_subject.models import StudyMedication
13
-
14
-
15
- class TestStudyMedication(MetaTestCaseMixin, TestCase):
16
- def setUp(self):
17
- super().setUp()
18
- self.subject_visit = self.get_subject_visit()
19
- self.registered_subject = RegisteredSubject.objects.get(
20
- subject_identifier=self.subject_visit.subject_identifier
21
- )
22
-
23
- def test_rx_exists(self):
24
- self.assertRaises(
25
- PrescriptionAlreadyExists,
26
- create_prescription,
27
- subject_identifier=self.registered_subject.subject_identifier,
28
- report_datetime=self.registered_subject.registration_datetime,
29
- medication_names=[METFORMIN],
30
- site=self.registered_subject.site,
31
- )
32
-
33
- def test_missing_formulation(self):
34
- obj = StudyMedication(subject_visit=self.subject_visit)
35
- with self.assertRaises(StudyMedicationError) as cm:
36
- obj.save()
37
- self.assertIn("Formulation", str(cm.exception))
38
-
39
- def test_missing_dosage_guideline(self):
40
- medication = Medication.objects.get(name=METFORMIN)
41
- formulation = Formulation.objects.filter(medication=medication)[0]
42
- obj = StudyMedication(
43
- subject_visit=self.subject_visit,
44
- refill_start_datetime=self.subject_visit.report_datetime,
45
- refill_to_next_visit=YES,
46
- formulation=formulation,
47
- )
48
- with self.assertRaises(StudyMedicationError) as cm:
49
- obj.save()
50
- self.assertIn("Dosage guideline", str(cm.exception))
51
-
52
- def test_study_med_longitudinal_and_one_rx_refill_created(self):
53
- medication = Medication.objects.get(name=METFORMIN)
54
- formulation = Formulation.objects.filter(medication=medication)[0]
55
- dosage_guideline = DosageGuideline.objects.filter(medication=medication)[0]
56
- obj = StudyMedication(
57
- subject_visit=self.subject_visit,
58
- refill_start_datetime=self.subject_visit.report_datetime,
59
- formulation=formulation,
60
- dosage_guideline=dosage_guideline,
61
- refill_to_next_visit=YES,
62
- )
63
- obj.save()
64
- try:
65
- RxRefill.objects.get(
66
- rx=obj.rx,
67
- rx__subject_identifier=self.subject_visit.subject_identifier,
68
- refill_start_datetime=obj.refill_start_datetime,
69
- )
70
- except ObjectDoesNotExist:
71
- self.fail("ObjectDoesNotExist unexpectedly raised")
72
-
73
- self.assertEqual(RxRefill.objects.filter(rx=obj.rx).count(), 1)
74
-
75
- def test_study_med_longitudinal_updated_and_same_rx_refill_updated(self):
76
- """Assert study med update operates on same rx_refill when updated"""
77
- medication = Medication.objects.get(name=METFORMIN)
78
- formulation = Formulation.objects.filter(medication=medication)[0]
79
- dosage_guideline = DosageGuideline.objects.filter(medication=medication)[0]
80
- obj = StudyMedication(
81
- subject_visit=self.subject_visit,
82
- refill_start_datetime=self.subject_visit.report_datetime,
83
- formulation=formulation,
84
- dosage_guideline=dosage_guideline,
85
- refill_to_next_visit=YES,
86
- )
87
- obj.save()
88
- obj.save()
89
- self.assertEqual(RxRefill.objects.filter(rx=obj.rx).count(), 1)
90
- changed_dosage_guideline = DosageGuideline.objects.filter(medication=medication)[1]
91
- obj.dosage_guideline = changed_dosage_guideline
92
- obj.save()
93
- self.assertEqual(RxRefill.objects.filter(rx=obj.rx).count(), 1)
94
- rx = RxRefill.objects.get(rx=obj.rx)
95
- self.assertEqual(rx.dosage_guideline, obj.dosage_guideline)
96
-
97
- def test_study_med_longitudinal_update_start_datetime_and_same_rx_refill_updated(self):
98
- """Assert study med update operates on same rx_refill when updated"""
99
- medication = Medication.objects.get(name=METFORMIN)
100
- formulation = Formulation.objects.filter(medication=medication)[0]
101
- dosage_guideline = DosageGuideline.objects.filter(medication=medication)[0]
102
- obj = StudyMedication(
103
- subject_visit=self.subject_visit,
104
- refill_start_datetime=self.subject_visit.report_datetime,
105
- formulation=formulation,
106
- dosage_guideline=dosage_guideline,
107
- refill_to_next_visit=YES,
108
- )
109
- obj.save()
110
- obj.save()
111
- self.assertEqual(RxRefill.objects.filter(rx=obj.rx).count(), 1)
112
- obj.refill_start_datetime = obj.refill_start_datetime + relativedelta(hours=1)
113
- obj.save()
114
- self.assertEqual(RxRefill.objects.filter(rx=obj.rx).count(), 1)
115
- rx = RxRefill.objects.get(rx=obj.rx)
116
- self.assertEqual(rx.refill_start_datetime, obj.refill_start_datetime)
117
-
118
- def test_study_med_longitudinal_and_one_rx_refill_created2(self):
119
- medication = Medication.objects.get(name=METFORMIN)
120
- formulation = Formulation.objects.filter(medication=medication)[0]
121
- dosage_guideline = DosageGuideline.objects.filter(medication=medication)[0]
122
- obj = StudyMedication(
123
- subject_visit=self.subject_visit,
124
- refill_start_datetime=self.subject_visit.report_datetime,
125
- formulation=formulation,
126
- dosage_guideline=dosage_guideline,
127
- refill_to_next_visit=YES,
128
- )
129
- obj.save()
130
- try:
131
- RxRefill.objects.get(
132
- rx=obj.rx,
133
- rx__subject_identifier=self.subject_visit.subject_identifier,
134
- refill_start_datetime=obj.refill_start_datetime,
135
- )
136
- except ObjectDoesNotExist:
137
- self.fail("ObjectDoesNotExist unexpectedly raised")
138
-
139
- self.assertEqual(RxRefill.objects.filter(rx=obj.rx).count(), 1)
140
-
141
- try:
142
- RxRefill.objects.get(refill_identifier=obj.refill_identifier)
143
- except ObjectDoesNotExist:
144
- self.fail("ObjectDoesNotExist unexpectedly raised")
145
-
146
- def test_study_med_longitudinal_and_two_rx_refill_created(self):
147
- date_sequence = []
148
- medication = Medication.objects.get(name=METFORMIN)
149
- formulation = Formulation.objects.filter(medication=medication)[0]
150
- dosage_guideline = DosageGuideline.objects.filter(medication=medication)[0]
151
- subject_visits = [self.subject_visit, self.get_next_subject_visit(self.subject_visit)]
152
- for i in [1, 2]:
153
- subject_visit = subject_visits[i - 1]
154
- obj = StudyMedication(
155
- subject_visit=subject_visit,
156
- refill_start_datetime=subject_visit.report_datetime,
157
- formulation=formulation,
158
- dosage_guideline=dosage_guideline,
159
- refill_to_next_visit=YES,
160
- )
161
- obj.save()
162
- date_sequence.append(obj.refill_start_datetime)
163
- try:
164
- RxRefill.objects.get(
165
- rx=obj.rx,
166
- rx__subject_identifier=subject_visit.subject_identifier,
167
- refill_start_datetime=obj.refill_start_datetime,
168
- )
169
- except ObjectDoesNotExist:
170
- self.fail("ObjectDoesNotExist unexpectedly raised")
171
-
172
- self.assertEqual(RxRefill.objects.filter(rx=obj.rx).count(), i)
173
-
174
- try:
175
- rx_refill = RxRefill.objects.get(refill_identifier=obj.refill_identifier)
176
- except ObjectDoesNotExist:
177
- self.fail("ObjectDoesNotExist unexpectedly raised")
178
- date_sequence.append(rx_refill.refill_end_datetime)
179
- dte1, dte2, dte3, dte4 = date_sequence
180
- self.assertTrue(dte1 <= dte2 <= dte3 <= dte4)
181
-
182
- def test_study_med_longitudinal(self):
183
- StudyMedication(
184
- subject_visit=self.subject_visit,
185
- refill_start_datetime=self.subject_visit.report_datetime,
186
- refill_to_next_visit=YES,
187
- )
188
- subject_visit = self.get_next_subject_visit(self.subject_visit)
189
- StudyMedication(
190
- subject_visit=subject_visit,
191
- refill_start_datetime=subject_visit.report_datetime,
192
- refill_to_next_visit=YES,
193
- )
194
- subject_visit = self.get_next_subject_visit(subject_visit)
195
- StudyMedication(
196
- subject_visit=subject_visit,
197
- refill_start_datetime=subject_visit.report_datetime,
198
- refill_to_next_visit=YES,
199
- )
200
- subject_visit = self.get_next_subject_visit(subject_visit)
201
- StudyMedication(
202
- subject_visit=subject_visit,
203
- refill_start_datetime=subject_visit.report_datetime,
204
- refill_to_next_visit=YES,
205
- )
206
- subject_visit = self.get_next_subject_visit(subject_visit)
207
- StudyMedication(
208
- subject_visit=subject_visit,
209
- refill_start_datetime=subject_visit.report_datetime,
210
- refill_to_next_visit=YES,
211
- )
212
- subject_visit = self.get_next_subject_visit(subject_visit)
213
- StudyMedication(
214
- subject_visit=subject_visit,
215
- refill_start_datetime=subject_visit.report_datetime,
216
- refill_to_next_visit=YES,
217
- )
218
- subject_visit = self.get_next_subject_visit(subject_visit)
219
- StudyMedication(
220
- subject_visit=subject_visit,
221
- refill_start_datetime=subject_visit.report_datetime,
222
- refill_to_next_visit=YES,
223
- )
224
- subject_visit = self.get_next_subject_visit(subject_visit)
225
- StudyMedication(
226
- subject_visit=subject_visit,
227
- refill_start_datetime=subject_visit.report_datetime,
228
- refill_to_next_visit=YES,
229
- )
@@ -1,24 +0,0 @@
1
- from django.contrib.auth import admin
2
- from django.urls.conf import include, path
3
- from django.views.generic.base import RedirectView
4
-
5
- from meta_ae.admin_site import meta_ae_admin
6
-
7
- urlpatterns = [
8
- path("admin/", meta_ae_admin.urls),
9
- path("admin/", admin.site.urls),
10
- path("accounts/", include("edc_auth.urls")),
11
- path("edc_adverse_event/", include("edc_adverse_event.urls")),
12
- path("edc_auth/", include("edc_auth.urls")),
13
- path("edc_consent/", include("edc_consent.urls")),
14
- path("edc_dashboard/", include("edc_dashboard.urls")),
15
- path("edc_device/", include("edc_device.urls")),
16
- path("edc_export/", include("edc_export.urls")),
17
- path("edc_protocol/", include("edc_protocol.urls")),
18
- path("edc_randomization/", include("edc_randomization.urls")),
19
- path("edc_visit_schedule/", include("edc_visit_schedule.urls")),
20
- path("ae/", include("meta_ae.urls")),
21
- path("meta_consent/", include("meta_consent.urls")),
22
- path("administration", RedirectView.as_view(url="admin/"), name="administration_url"),
23
- path("", RedirectView.as_view(url="admin/"), name="home_url"),
24
- ]
File without changes
File without changes
@@ -1,181 +0,0 @@
1
- from django.test import TestCase
2
-
3
- from meta_consent.consents import consent_v1
4
- from meta_edc.meta_version import PHASE_THREE, PHASE_TWO, get_meta_version
5
- from meta_visit_schedule.visit_schedules import schedule
6
- from meta_visit_schedule.visit_schedules.phase_three import visit_schedule
7
-
8
-
9
- class TestVisitSchedule(TestCase):
10
- def test_visit_schedule_models(self):
11
- self.assertEqual(visit_schedule.death_report_model, "meta_ae.deathreport")
12
- self.assertEqual(visit_schedule.offstudy_model, "meta_prn.endofstudy")
13
- self.assertEqual(visit_schedule.locator_model, "edc_locator.subjectlocator")
14
-
15
- def test_schedule_models(self):
16
- self.assertEqual(schedule.onschedule_model, "meta_prn.onschedule")
17
- self.assertEqual(schedule.offschedule_model, "meta_prn.offschedule")
18
- self.assertEqual(schedule.consent_definitions, [consent_v1])
19
- self.assertEqual(schedule.appointment_model, "edc_appointment.appointment")
20
-
21
- def test_visit_codes_phase_two(self):
22
- if get_meta_version() == PHASE_TWO:
23
- self.assertEqual(
24
- [
25
- "1000",
26
- "1005",
27
- "1010",
28
- "1030",
29
- "1060",
30
- "1090",
31
- "1120",
32
- ],
33
- [visit for visit in schedule.visits],
34
- )
35
-
36
- def test_visit_codes_phase_three(self):
37
- if get_meta_version() == PHASE_THREE:
38
- self.assertEqual(
39
- [
40
- "1000",
41
- "1005",
42
- "1010",
43
- "1030",
44
- "1060",
45
- "1090",
46
- "1120",
47
- "1150",
48
- "1180",
49
- "1210",
50
- "1240",
51
- "1270",
52
- "1300",
53
- "1330",
54
- "1360",
55
- "1390",
56
- "1420",
57
- "1450",
58
- "1480",
59
- ],
60
- [visit for visit in schedule.visits],
61
- )
62
-
63
- def test_requisitions(self):
64
- if get_meta_version() == PHASE_TWO:
65
- prn = [
66
- "blood_glucose_poc",
67
- "chemistry",
68
- "fbc",
69
- "hba1c_poc",
70
- ]
71
- expected = {
72
- "1000": ["chemistry", "fbc", "hba1c_poc"],
73
- "1005": [],
74
- "1010": [],
75
- "1030": ["chemistry"],
76
- "1060": ["chemistry", "hba1c_poc"],
77
- "1090": ["chemistry"],
78
- "1120": ["blood_glucose_poc", "chemistry", "fbc", "hba1c_poc"],
79
- }
80
- for visit_code, visit in schedule.visits.items():
81
- with self.subTest(visit_code=visit_code, visit=visit):
82
- actual = [requisition.name for requisition in visit.requisitions]
83
- actual.sort()
84
- self.assertEqual(
85
- expected.get(visit_code),
86
- actual,
87
- msg=f"see requisitions for visit {visit_code}",
88
- )
89
- actual = [requisition.name for requisition in visit.requisitions_prn]
90
- actual.sort()
91
- self.assertEqual(
92
- prn, actual, msg=f"see PRN requisitions for visit {visit_code}"
93
- )
94
-
95
- def test_crfs_phase_two(self):
96
- if get_meta_version() == PHASE_TWO:
97
- prn = [
98
- "meta_subject.bloodresultsfbc",
99
- "meta_subject.bloodresultsglu",
100
- "meta_subject.bloodresultshba1c",
101
- "meta_subject.bloodresultslft",
102
- "meta_subject.bloodresultslipid",
103
- "meta_subject.bloodresultsrft",
104
- "meta_subject.glucose",
105
- "meta_subject.healtheconomics",
106
- "meta_subject.malariatest",
107
- "meta_subject.urinedipsticktest",
108
- ]
109
- expected = {
110
- "1000": [
111
- "meta_subject.physicalexam",
112
- "meta_subject.patienthistory",
113
- "meta_subject.bloodresultsfbc",
114
- "meta_subject.bloodresultshba1c",
115
- "meta_subject.bloodresultslft",
116
- "meta_subject.bloodresultslipid",
117
- "meta_subject.bloodresultsrft",
118
- "meta_subject.malariatest",
119
- "meta_subject.urinedipsticktest",
120
- ],
121
- "1005": [
122
- "meta_subject.followupvitals",
123
- "meta_subject.followupexamination",
124
- "meta_subject.healtheconomics",
125
- "meta_subject.medicationadherence",
126
- ],
127
- "1010": [
128
- "meta_subject.followupvitals",
129
- "meta_subject.followupexamination",
130
- "meta_subject.medicationadherence",
131
- ],
132
- "1030": [
133
- "meta_subject.bloodresultslft",
134
- "meta_subject.bloodresultsrft",
135
- "meta_subject.followupvitals",
136
- "meta_subject.followupexamination",
137
- "meta_subject.medicationadherence",
138
- ],
139
- "1060": [
140
- "meta_subject.followupvitals",
141
- "meta_subject.followupexamination",
142
- "meta_subject.medicationadherence",
143
- "meta_subject.glucose",
144
- "meta_subject.bloodresultshba1c",
145
- "meta_subject.bloodresultslft",
146
- "meta_subject.bloodresultsrft",
147
- ],
148
- "1090": [
149
- "meta_subject.bloodresultslft",
150
- "meta_subject.bloodresultsrft",
151
- "meta_subject.followupvitals",
152
- "meta_subject.followupexamination",
153
- "meta_subject.medicationadherence",
154
- ],
155
- "1120": [
156
- "meta_subject.followupvitals",
157
- "meta_subject.followupexamination",
158
- "meta_subject.medicationadherence",
159
- "meta_subject.glucose",
160
- "meta_subject.bloodresultshba1c",
161
- "meta_subject.bloodresultsfbc",
162
- "meta_subject.bloodresultslipid",
163
- "meta_subject.bloodresultslft",
164
- "meta_subject.bloodresultsrft",
165
- "meta_subject.malariatest",
166
- ],
167
- }
168
- for visit_code, visit in schedule.visits.items():
169
- with self.subTest(visit_code=visit_code, visit=visit):
170
- actual = [crf.model for crf in visit.crfs]
171
- actual.sort()
172
- expected.get(visit_code).sort()
173
- self.assertEqual(
174
- expected.get(visit_code),
175
- actual,
176
- msg=f"see CRFs for visit {visit_code}",
177
- )
178
-
179
- actual = [crf.model for crf in visit.crfs_prn]
180
- actual.sort()
181
- self.assertEqual(prn, actual, msg=f"see PRN CRFs for visit {visit_code}")