brainstate 0.1.10__py2.py3-none-any.whl → 0.2.1__py2.py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (163) hide show
  1. brainstate/__init__.py +169 -58
  2. brainstate/_compatible_import.py +340 -148
  3. brainstate/_compatible_import_test.py +681 -0
  4. brainstate/_deprecation.py +210 -0
  5. brainstate/_deprecation_test.py +2319 -0
  6. brainstate/{util/error.py → _error.py} +45 -55
  7. brainstate/_state.py +1652 -1605
  8. brainstate/_state_test.py +52 -52
  9. brainstate/_utils.py +47 -47
  10. brainstate/environ.py +1495 -563
  11. brainstate/environ_test.py +1223 -62
  12. brainstate/graph/__init__.py +22 -29
  13. brainstate/graph/_node.py +240 -0
  14. brainstate/graph/_node_test.py +589 -0
  15. brainstate/graph/{_graph_operation.py → _operation.py} +1624 -1738
  16. brainstate/graph/_operation_test.py +1147 -0
  17. brainstate/mixin.py +1433 -365
  18. brainstate/mixin_test.py +1017 -77
  19. brainstate/nn/__init__.py +137 -135
  20. brainstate/nn/_activations.py +1100 -808
  21. brainstate/nn/_activations_test.py +354 -331
  22. brainstate/nn/_collective_ops.py +633 -514
  23. brainstate/nn/_collective_ops_test.py +774 -43
  24. brainstate/nn/_common.py +226 -178
  25. brainstate/nn/_common_test.py +154 -0
  26. brainstate/nn/_conv.py +2010 -501
  27. brainstate/nn/_conv_test.py +849 -238
  28. brainstate/nn/_delay.py +575 -588
  29. brainstate/nn/_delay_test.py +243 -238
  30. brainstate/nn/_dropout.py +618 -426
  31. brainstate/nn/_dropout_test.py +477 -100
  32. brainstate/nn/_dynamics.py +1267 -1343
  33. brainstate/nn/_dynamics_test.py +67 -78
  34. brainstate/nn/_elementwise.py +1298 -1119
  35. brainstate/nn/_elementwise_test.py +830 -169
  36. brainstate/nn/_embedding.py +408 -58
  37. brainstate/nn/_embedding_test.py +156 -0
  38. brainstate/nn/{_fixedprob.py → _event_fixedprob.py} +233 -239
  39. brainstate/nn/{_fixedprob_test.py → _event_fixedprob_test.py} +115 -114
  40. brainstate/nn/{_linear_mv.py → _event_linear.py} +83 -83
  41. brainstate/nn/{_linear_mv_test.py → _event_linear_test.py} +121 -120
  42. brainstate/nn/_exp_euler.py +254 -92
  43. brainstate/nn/_exp_euler_test.py +377 -35
  44. brainstate/nn/_linear.py +744 -424
  45. brainstate/nn/_linear_test.py +475 -107
  46. brainstate/nn/_metrics.py +1070 -0
  47. brainstate/nn/_metrics_test.py +611 -0
  48. brainstate/nn/_module.py +384 -377
  49. brainstate/nn/_module_test.py +40 -40
  50. brainstate/nn/_normalizations.py +1334 -975
  51. brainstate/nn/_normalizations_test.py +699 -73
  52. brainstate/nn/_paddings.py +1020 -0
  53. brainstate/nn/_paddings_test.py +723 -0
  54. brainstate/nn/_poolings.py +2239 -1177
  55. brainstate/nn/_poolings_test.py +953 -217
  56. brainstate/nn/{_rate_rnns.py → _rnns.py} +946 -554
  57. brainstate/nn/_rnns_test.py +593 -0
  58. brainstate/nn/_utils.py +216 -89
  59. brainstate/nn/_utils_test.py +402 -0
  60. brainstate/{init/_random_inits.py → nn/init.py} +809 -553
  61. brainstate/{init/_random_inits_test.py → nn/init_test.py} +180 -149
  62. brainstate/random/__init__.py +270 -24
  63. brainstate/random/_rand_funs.py +3938 -3616
  64. brainstate/random/_rand_funs_test.py +640 -567
  65. brainstate/random/_rand_seed.py +675 -210
  66. brainstate/random/_rand_seed_test.py +48 -48
  67. brainstate/random/_rand_state.py +1617 -1409
  68. brainstate/random/_rand_state_test.py +551 -0
  69. brainstate/transform/__init__.py +59 -0
  70. brainstate/transform/_ad_checkpoint.py +176 -0
  71. brainstate/{compile → transform}/_ad_checkpoint_test.py +49 -49
  72. brainstate/{augment → transform}/_autograd.py +1025 -778
  73. brainstate/{augment → transform}/_autograd_test.py +1289 -1289
  74. brainstate/transform/_conditions.py +316 -0
  75. brainstate/{compile → transform}/_conditions_test.py +220 -220
  76. brainstate/{compile → transform}/_error_if.py +94 -92
  77. brainstate/{compile → transform}/_error_if_test.py +52 -52
  78. brainstate/transform/_eval_shape.py +145 -0
  79. brainstate/{augment → transform}/_eval_shape_test.py +38 -38
  80. brainstate/{compile → transform}/_jit.py +399 -346
  81. brainstate/{compile → transform}/_jit_test.py +143 -143
  82. brainstate/{compile → transform}/_loop_collect_return.py +675 -536
  83. brainstate/{compile → transform}/_loop_collect_return_test.py +58 -58
  84. brainstate/{compile → transform}/_loop_no_collection.py +283 -184
  85. brainstate/{compile → transform}/_loop_no_collection_test.py +50 -50
  86. brainstate/transform/_make_jaxpr.py +2016 -0
  87. brainstate/transform/_make_jaxpr_test.py +1510 -0
  88. brainstate/transform/_mapping.py +529 -0
  89. brainstate/transform/_mapping_test.py +194 -0
  90. brainstate/{compile → transform}/_progress_bar.py +255 -202
  91. brainstate/{augment → transform}/_random.py +171 -151
  92. brainstate/{compile → transform}/_unvmap.py +256 -159
  93. brainstate/transform/_util.py +286 -0
  94. brainstate/typing.py +837 -304
  95. brainstate/typing_test.py +780 -0
  96. brainstate/util/__init__.py +27 -50
  97. brainstate/util/_others.py +1025 -0
  98. brainstate/util/_others_test.py +962 -0
  99. brainstate/util/_pretty_pytree.py +1301 -0
  100. brainstate/util/_pretty_pytree_test.py +675 -0
  101. brainstate/util/{pretty_repr.py → _pretty_repr.py} +462 -328
  102. brainstate/util/_pretty_repr_test.py +696 -0
  103. brainstate/util/filter.py +945 -469
  104. brainstate/util/filter_test.py +912 -0
  105. brainstate/util/struct.py +910 -523
  106. brainstate/util/struct_test.py +602 -0
  107. {brainstate-0.1.10.dist-info → brainstate-0.2.1.dist-info}/METADATA +108 -91
  108. brainstate-0.2.1.dist-info/RECORD +111 -0
  109. {brainstate-0.1.10.dist-info → brainstate-0.2.1.dist-info}/licenses/LICENSE +202 -202
  110. brainstate/augment/__init__.py +0 -30
  111. brainstate/augment/_eval_shape.py +0 -99
  112. brainstate/augment/_mapping.py +0 -1060
  113. brainstate/augment/_mapping_test.py +0 -597
  114. brainstate/compile/__init__.py +0 -38
  115. brainstate/compile/_ad_checkpoint.py +0 -204
  116. brainstate/compile/_conditions.py +0 -256
  117. brainstate/compile/_make_jaxpr.py +0 -888
  118. brainstate/compile/_make_jaxpr_test.py +0 -156
  119. brainstate/compile/_util.py +0 -147
  120. brainstate/functional/__init__.py +0 -27
  121. brainstate/graph/_graph_node.py +0 -244
  122. brainstate/graph/_graph_node_test.py +0 -73
  123. brainstate/graph/_graph_operation_test.py +0 -563
  124. brainstate/init/__init__.py +0 -26
  125. brainstate/init/_base.py +0 -52
  126. brainstate/init/_generic.py +0 -244
  127. brainstate/init/_regular_inits.py +0 -105
  128. brainstate/init/_regular_inits_test.py +0 -50
  129. brainstate/nn/_inputs.py +0 -608
  130. brainstate/nn/_ltp.py +0 -28
  131. brainstate/nn/_neuron.py +0 -705
  132. brainstate/nn/_neuron_test.py +0 -161
  133. brainstate/nn/_others.py +0 -46
  134. brainstate/nn/_projection.py +0 -486
  135. brainstate/nn/_rate_rnns_test.py +0 -63
  136. brainstate/nn/_readout.py +0 -209
  137. brainstate/nn/_readout_test.py +0 -53
  138. brainstate/nn/_stp.py +0 -236
  139. brainstate/nn/_synapse.py +0 -505
  140. brainstate/nn/_synapse_test.py +0 -131
  141. brainstate/nn/_synaptic_projection.py +0 -423
  142. brainstate/nn/_synouts.py +0 -162
  143. brainstate/nn/_synouts_test.py +0 -57
  144. brainstate/nn/metrics.py +0 -388
  145. brainstate/optim/__init__.py +0 -38
  146. brainstate/optim/_base.py +0 -64
  147. brainstate/optim/_lr_scheduler.py +0 -448
  148. brainstate/optim/_lr_scheduler_test.py +0 -50
  149. brainstate/optim/_optax_optimizer.py +0 -152
  150. brainstate/optim/_optax_optimizer_test.py +0 -53
  151. brainstate/optim/_sgd_optimizer.py +0 -1104
  152. brainstate/random/_random_for_unit.py +0 -52
  153. brainstate/surrogate.py +0 -1957
  154. brainstate/transform.py +0 -23
  155. brainstate/util/caller.py +0 -98
  156. brainstate/util/others.py +0 -540
  157. brainstate/util/pretty_pytree.py +0 -945
  158. brainstate/util/pretty_pytree_test.py +0 -159
  159. brainstate/util/pretty_table.py +0 -2954
  160. brainstate/util/scaling.py +0 -258
  161. brainstate-0.1.10.dist-info/RECORD +0 -130
  162. {brainstate-0.1.10.dist-info → brainstate-0.2.1.dist-info}/WHEEL +0 -0
  163. {brainstate-0.1.10.dist-info → brainstate-0.2.1.dist-info}/top_level.txt +0 -0
@@ -1,159 +1,256 @@
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- # Copyright 2024 BDP Ecosystem Limited. All Rights Reserved.
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- #
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- # Licensed under the Apache License, Version 2.0 (the "License");
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- # you may not use this file except in compliance with the License.
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- # You may obtain a copy of the License at
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- #
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- # http://www.apache.org/licenses/LICENSE-2.0
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- #
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- # Unless required by applicable law or agreed to in writing, software
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- # distributed under the License is distributed on an "AS IS" BASIS,
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- # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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- # See the License for the specific language governing permissions and
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- # limitations under the License.
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- # ==============================================================================
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-
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- import jax
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- import jax.core
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- import jax.interpreters.batching as batching
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- import jax.interpreters.mlir as mlir
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- import jax.numpy as jnp
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-
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- from brainstate._compatible_import import Primitive
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- from brainstate._utils import set_module_as
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-
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- __all__ = [
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- "unvmap",
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- ]
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-
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-
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- @set_module_as('brainstate.augment')
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- def unvmap(x, op: str = 'any'):
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- if op == 'all':
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- return unvmap_all(x)
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- elif op == 'any':
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- return unvmap_any(x)
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- elif op == 'none':
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- return _without_vmap(x)
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- elif op == 'max':
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- return unvmap_max(x)
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- else:
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- raise ValueError(f'Do not support type: {op}')
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-
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-
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- # unvmap_all
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-
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- unvmap_all_p = Primitive("unvmap_all")
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-
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-
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- def unvmap_all(x):
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- """As `jnp.all`, but ignores batch dimensions."""
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- return unvmap_all_p.bind(x)
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-
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-
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- def _unvmap_all_impl(x):
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- return jnp.all(x)
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-
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-
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- def _unvmap_all_abstract_eval(x):
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- return jax.core.ShapedArray(shape=(), dtype=jax.numpy.bool_.dtype) # pyright: ignore
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-
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-
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- def _unvmap_all_batch(x, batch_axes):
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- (x,) = x
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- return unvmap_all(x), batching.not_mapped
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-
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-
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- unvmap_all_p.def_impl(_unvmap_all_impl)
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- unvmap_all_p.def_abstract_eval(_unvmap_all_abstract_eval)
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- batching.primitive_batchers[unvmap_all_p] = _unvmap_all_batch # pyright: ignore
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- mlir.register_lowering(
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- unvmap_all_p,
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- mlir.lower_fun(_unvmap_all_impl, multiple_results=False),
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- )
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-
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- # unvmap_any
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-
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- unvmap_any_p = Primitive("unvmap_any")
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-
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-
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- def unvmap_any(x):
81
- """As `jnp.any`, but ignores batch dimensions."""
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- return unvmap_any_p.bind(x)
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-
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-
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- def _unvmap_any_impl(x):
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- return jnp.any(x)
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-
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-
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- def _unvmap_any_abstract_eval(x):
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- return jax.core.ShapedArray(shape=(), dtype=jax.numpy.bool_.dtype) # pyright: ignore
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-
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-
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- def _unvmap_any_batch(x, batch_axes):
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- (x,) = x
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- return unvmap_any(x), batching.not_mapped
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-
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-
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- unvmap_any_p.def_impl(_unvmap_any_impl)
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- unvmap_any_p.def_abstract_eval(_unvmap_any_abstract_eval)
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- batching.primitive_batchers[unvmap_any_p] = _unvmap_any_batch # pyright: ignore
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- mlir.register_lowering(
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- unvmap_any_p,
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- mlir.lower_fun(_unvmap_any_impl, multiple_results=False),
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- )
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-
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- # unvmap_max
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-
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- unvmap_max_p = Primitive("unvmap_max")
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-
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-
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- def unvmap_max(x):
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- """As `jnp.max`, but ignores batch dimensions."""
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- return unvmap_max_p.bind(x)
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-
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-
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- def _unvmap_max_impl(x):
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- return jnp.max(x)
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-
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-
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- def _unvmap_max_abstract_eval(x):
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- return jax.core.ShapedArray(shape=(), dtype=x.dtype)
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-
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-
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- def _unvmap_max_batch(x, batch_axes):
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- (x,) = x
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- return unvmap_max(x), batching.not_mapped
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-
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-
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- unvmap_max_p.def_impl(_unvmap_max_impl)
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- unvmap_max_p.def_abstract_eval(_unvmap_max_abstract_eval)
131
- batching.primitive_batchers[unvmap_max_p] = _unvmap_max_batch # pyright: ignore
132
- mlir.register_lowering(
133
- unvmap_max_p,
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- mlir.lower_fun(_unvmap_max_impl, multiple_results=False),
135
- )
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-
137
-
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- def _without_vmap(x):
139
- return _no_vmap_prim.bind(x)
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-
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-
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- def _without_vmap_imp(x):
143
- return x
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-
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-
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- def _without_vmap_abs(x):
147
- return x
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-
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-
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- def _without_vmap_batch(x, batch_axes):
151
- (x,) = x
152
- return _without_vmap(x), batching.not_mapped
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-
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-
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- _no_vmap_prim = Primitive('no_vmap')
156
- _no_vmap_prim.def_impl(_without_vmap_imp)
157
- _no_vmap_prim.def_abstract_eval(_without_vmap_abs)
158
- batching.primitive_batchers[_no_vmap_prim] = _without_vmap_batch
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- mlir.register_lowering(_no_vmap_prim, mlir.lower_fun(_without_vmap_imp, multiple_results=False))
1
+ # Copyright 2024 BrainX Ecosystem Limited. All Rights Reserved.
2
+ #
3
+ # Licensed under the Apache License, Version 2.0 (the "License");
4
+ # you may not use this file except in compliance with the License.
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+ # You may obtain a copy of the License at
6
+ #
7
+ # http://www.apache.org/licenses/LICENSE-2.0
8
+ #
9
+ # Unless required by applicable law or agreed to in writing, software
10
+ # distributed under the License is distributed on an "AS IS" BASIS,
11
+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
12
+ # See the License for the specific language governing permissions and
13
+ # limitations under the License.
14
+ # ==============================================================================
15
+
16
+ import jax
17
+ import jax.core
18
+ import jax.interpreters.batching as batching
19
+ import jax.interpreters.mlir as mlir
20
+ import jax.numpy as jnp
21
+
22
+ from brainstate._compatible_import import Primitive
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+ from brainstate._utils import set_module_as
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+
25
+ __all__ = [
26
+ "unvmap",
27
+ ]
28
+
29
+
30
+ @set_module_as('brainstate.transform')
31
+ def unvmap(x, op: str = 'any'):
32
+ """
33
+ Remove a leading vmap dimension by aggregating batched values.
34
+
35
+ Parameters
36
+ ----------
37
+ x : Any
38
+ Value produced inside a :func:`jax.vmap`-transformed function.
39
+ op : {'all', 'any', 'none', 'max'}, default='any'
40
+ Reduction to apply across the vmapped axis. ``'none'`` returns ``x`` without
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+ reduction, while ``'max'`` computes the maximum element.
42
+
43
+ Returns
44
+ -------
45
+ Any
46
+ Result of applying the requested reduction with vmap metadata removed.
47
+
48
+ Raises
49
+ ------
50
+ ValueError
51
+ If ``op`` is not one of ``'all'``, ``'any'``, ``'none'``, or ``'max'``.
52
+
53
+ Examples
54
+ --------
55
+ .. code-block:: python
56
+
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+ >>> import jax.numpy as jnp
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+ >>> import brainstate
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+ >>>
60
+ >>> xs = jnp.array([[True, False], [True, True]])
61
+ >>> brainstate.transform.unvmap(xs, op='all')
62
+ """
63
+ if op == 'all':
64
+ return unvmap_all(x)
65
+ elif op == 'any':
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+ return unvmap_any(x)
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+ elif op == 'none':
68
+ return _without_vmap(x)
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+ elif op == 'max':
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+ return unvmap_max(x)
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+ else:
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+ raise ValueError(f'Do not support type: {op}')
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+
74
+
75
+ # unvmap_all
76
+
77
+ unvmap_all_p = Primitive("unvmap_all")
78
+
79
+
80
+ def unvmap_all(x):
81
+ """
82
+ Evaluate :func:`jax.numpy.all` while ignoring vmapped batch dimensions.
83
+
84
+ Parameters
85
+ ----------
86
+ x : Any
87
+ Input array or pytree produced under :func:`jax.vmap`.
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+
89
+ Returns
90
+ -------
91
+ jax.Array
92
+ Scalar boolean result of ``jnp.all(x)``.
93
+
94
+ Examples
95
+ --------
96
+ .. code-block:: python
97
+
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+ >>> import jax.numpy as jnp
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+ >>> import brainstate
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+ >>>
101
+ >>> values = jnp.array([[True, False], [True, True]])
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+ >>> brainstate.transform.unvmap(values, op='all')
103
+ """
104
+ return unvmap_all_p.bind(x)
105
+
106
+
107
+ def _unvmap_all_impl(x):
108
+ return jnp.all(x)
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+
110
+
111
+ def _unvmap_all_abstract_eval(x):
112
+ return jax.core.ShapedArray(shape=(), dtype=jax.numpy.bool_.dtype) # pyright: ignore
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+
114
+
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+ def _unvmap_all_batch(x, batch_axes):
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+ (x,) = x
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+ return unvmap_all(x), batching.not_mapped
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+
119
+
120
+ unvmap_all_p.def_impl(_unvmap_all_impl)
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+ unvmap_all_p.def_abstract_eval(_unvmap_all_abstract_eval)
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+ batching.primitive_batchers[unvmap_all_p] = _unvmap_all_batch # pyright: ignore
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+ mlir.register_lowering(
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+ unvmap_all_p,
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+ mlir.lower_fun(_unvmap_all_impl, multiple_results=False),
126
+ )
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+
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+ # unvmap_any
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+
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+ unvmap_any_p = Primitive("unvmap_any")
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+
132
+
133
+ def unvmap_any(x):
134
+ """
135
+ Evaluate :func:`jax.numpy.any` while ignoring vmapped batch dimensions.
136
+
137
+ Parameters
138
+ ----------
139
+ x : Any
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+ Input array or pytree produced under :func:`jax.vmap`.
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+
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+ Returns
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+ -------
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+ jax.Array
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+ Scalar boolean result of ``jnp.any(x)``.
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+
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+ Examples
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+ --------
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+ .. code-block:: python
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+
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+ >>> import jax.numpy as jnp
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+ >>> import brainstate
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+ >>>
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+ >>> values = jnp.array([[False, False], [False, True]])
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+ >>> brainstate.transform.unvmap(values, op='any')
156
+ """
157
+ return unvmap_any_p.bind(x)
158
+
159
+
160
+ def _unvmap_any_impl(x):
161
+ return jnp.any(x)
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+
163
+
164
+ def _unvmap_any_abstract_eval(x):
165
+ return jax.core.ShapedArray(shape=(), dtype=jax.numpy.bool_.dtype) # pyright: ignore
166
+
167
+
168
+ def _unvmap_any_batch(x, batch_axes):
169
+ (x,) = x
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+ return unvmap_any(x), batching.not_mapped
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+
172
+
173
+ unvmap_any_p.def_impl(_unvmap_any_impl)
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+ unvmap_any_p.def_abstract_eval(_unvmap_any_abstract_eval)
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+ batching.primitive_batchers[unvmap_any_p] = _unvmap_any_batch # pyright: ignore
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+ mlir.register_lowering(
177
+ unvmap_any_p,
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+ mlir.lower_fun(_unvmap_any_impl, multiple_results=False),
179
+ )
180
+
181
+ # unvmap_max
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+
183
+ unvmap_max_p = Primitive("unvmap_max")
184
+
185
+
186
+ def unvmap_max(x):
187
+ """
188
+ Evaluate :func:`jax.numpy.max` while ignoring vmapped batch dimensions.
189
+
190
+ Parameters
191
+ ----------
192
+ x : Any
193
+ Input array or pytree produced under :func:`jax.vmap`.
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+
195
+ Returns
196
+ -------
197
+ jax.Array
198
+ Scalar containing the maximum value of ``x`` with the same dtype.
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+
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+ Examples
201
+ --------
202
+ .. code-block:: python
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+
204
+ >>> import jax.numpy as jnp
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+ >>> import brainstate
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+ >>>
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+ >>> values = jnp.array([[1.0, 2.0], [0.5, 3.5]])
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+ >>> brainstate.transform.unvmap(values, op='max')
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+ """
210
+ return unvmap_max_p.bind(x)
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+
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+
213
+ def _unvmap_max_impl(x):
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+ return jnp.max(x)
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+
216
+
217
+ def _unvmap_max_abstract_eval(x):
218
+ return jax.core.ShapedArray(shape=(), dtype=x.dtype)
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+
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+
221
+ def _unvmap_max_batch(x, batch_axes):
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+ (x,) = x
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+ return unvmap_max(x), batching.not_mapped
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+
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+
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+ unvmap_max_p.def_impl(_unvmap_max_impl)
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+ unvmap_max_p.def_abstract_eval(_unvmap_max_abstract_eval)
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+ batching.primitive_batchers[unvmap_max_p] = _unvmap_max_batch # pyright: ignore
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+ mlir.register_lowering(
230
+ unvmap_max_p,
231
+ mlir.lower_fun(_unvmap_max_impl, multiple_results=False),
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+ )
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+
234
+
235
+ def _without_vmap(x):
236
+ return _no_vmap_prim.bind(x)
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+
238
+
239
+ def _without_vmap_imp(x):
240
+ return x
241
+
242
+
243
+ def _without_vmap_abs(x):
244
+ return x
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+
246
+
247
+ def _without_vmap_batch(x, batch_axes):
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+ (x,) = x
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+ return _without_vmap(x), batching.not_mapped
250
+
251
+
252
+ _no_vmap_prim = Primitive('no_vmap')
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+ _no_vmap_prim.def_impl(_without_vmap_imp)
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+ _no_vmap_prim.def_abstract_eval(_without_vmap_abs)
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+ batching.primitive_batchers[_no_vmap_prim] = _without_vmap_batch
256
+ mlir.register_lowering(_no_vmap_prim, mlir.lower_fun(_without_vmap_imp, multiple_results=False))