brainstate 0.1.10__py2.py3-none-any.whl → 0.2.1__py2.py3-none-any.whl

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (163) hide show
  1. brainstate/__init__.py +169 -58
  2. brainstate/_compatible_import.py +340 -148
  3. brainstate/_compatible_import_test.py +681 -0
  4. brainstate/_deprecation.py +210 -0
  5. brainstate/_deprecation_test.py +2319 -0
  6. brainstate/{util/error.py → _error.py} +45 -55
  7. brainstate/_state.py +1652 -1605
  8. brainstate/_state_test.py +52 -52
  9. brainstate/_utils.py +47 -47
  10. brainstate/environ.py +1495 -563
  11. brainstate/environ_test.py +1223 -62
  12. brainstate/graph/__init__.py +22 -29
  13. brainstate/graph/_node.py +240 -0
  14. brainstate/graph/_node_test.py +589 -0
  15. brainstate/graph/{_graph_operation.py → _operation.py} +1624 -1738
  16. brainstate/graph/_operation_test.py +1147 -0
  17. brainstate/mixin.py +1433 -365
  18. brainstate/mixin_test.py +1017 -77
  19. brainstate/nn/__init__.py +137 -135
  20. brainstate/nn/_activations.py +1100 -808
  21. brainstate/nn/_activations_test.py +354 -331
  22. brainstate/nn/_collective_ops.py +633 -514
  23. brainstate/nn/_collective_ops_test.py +774 -43
  24. brainstate/nn/_common.py +226 -178
  25. brainstate/nn/_common_test.py +154 -0
  26. brainstate/nn/_conv.py +2010 -501
  27. brainstate/nn/_conv_test.py +849 -238
  28. brainstate/nn/_delay.py +575 -588
  29. brainstate/nn/_delay_test.py +243 -238
  30. brainstate/nn/_dropout.py +618 -426
  31. brainstate/nn/_dropout_test.py +477 -100
  32. brainstate/nn/_dynamics.py +1267 -1343
  33. brainstate/nn/_dynamics_test.py +67 -78
  34. brainstate/nn/_elementwise.py +1298 -1119
  35. brainstate/nn/_elementwise_test.py +830 -169
  36. brainstate/nn/_embedding.py +408 -58
  37. brainstate/nn/_embedding_test.py +156 -0
  38. brainstate/nn/{_fixedprob.py → _event_fixedprob.py} +233 -239
  39. brainstate/nn/{_fixedprob_test.py → _event_fixedprob_test.py} +115 -114
  40. brainstate/nn/{_linear_mv.py → _event_linear.py} +83 -83
  41. brainstate/nn/{_linear_mv_test.py → _event_linear_test.py} +121 -120
  42. brainstate/nn/_exp_euler.py +254 -92
  43. brainstate/nn/_exp_euler_test.py +377 -35
  44. brainstate/nn/_linear.py +744 -424
  45. brainstate/nn/_linear_test.py +475 -107
  46. brainstate/nn/_metrics.py +1070 -0
  47. brainstate/nn/_metrics_test.py +611 -0
  48. brainstate/nn/_module.py +384 -377
  49. brainstate/nn/_module_test.py +40 -40
  50. brainstate/nn/_normalizations.py +1334 -975
  51. brainstate/nn/_normalizations_test.py +699 -73
  52. brainstate/nn/_paddings.py +1020 -0
  53. brainstate/nn/_paddings_test.py +723 -0
  54. brainstate/nn/_poolings.py +2239 -1177
  55. brainstate/nn/_poolings_test.py +953 -217
  56. brainstate/nn/{_rate_rnns.py → _rnns.py} +946 -554
  57. brainstate/nn/_rnns_test.py +593 -0
  58. brainstate/nn/_utils.py +216 -89
  59. brainstate/nn/_utils_test.py +402 -0
  60. brainstate/{init/_random_inits.py → nn/init.py} +809 -553
  61. brainstate/{init/_random_inits_test.py → nn/init_test.py} +180 -149
  62. brainstate/random/__init__.py +270 -24
  63. brainstate/random/_rand_funs.py +3938 -3616
  64. brainstate/random/_rand_funs_test.py +640 -567
  65. brainstate/random/_rand_seed.py +675 -210
  66. brainstate/random/_rand_seed_test.py +48 -48
  67. brainstate/random/_rand_state.py +1617 -1409
  68. brainstate/random/_rand_state_test.py +551 -0
  69. brainstate/transform/__init__.py +59 -0
  70. brainstate/transform/_ad_checkpoint.py +176 -0
  71. brainstate/{compile → transform}/_ad_checkpoint_test.py +49 -49
  72. brainstate/{augment → transform}/_autograd.py +1025 -778
  73. brainstate/{augment → transform}/_autograd_test.py +1289 -1289
  74. brainstate/transform/_conditions.py +316 -0
  75. brainstate/{compile → transform}/_conditions_test.py +220 -220
  76. brainstate/{compile → transform}/_error_if.py +94 -92
  77. brainstate/{compile → transform}/_error_if_test.py +52 -52
  78. brainstate/transform/_eval_shape.py +145 -0
  79. brainstate/{augment → transform}/_eval_shape_test.py +38 -38
  80. brainstate/{compile → transform}/_jit.py +399 -346
  81. brainstate/{compile → transform}/_jit_test.py +143 -143
  82. brainstate/{compile → transform}/_loop_collect_return.py +675 -536
  83. brainstate/{compile → transform}/_loop_collect_return_test.py +58 -58
  84. brainstate/{compile → transform}/_loop_no_collection.py +283 -184
  85. brainstate/{compile → transform}/_loop_no_collection_test.py +50 -50
  86. brainstate/transform/_make_jaxpr.py +2016 -0
  87. brainstate/transform/_make_jaxpr_test.py +1510 -0
  88. brainstate/transform/_mapping.py +529 -0
  89. brainstate/transform/_mapping_test.py +194 -0
  90. brainstate/{compile → transform}/_progress_bar.py +255 -202
  91. brainstate/{augment → transform}/_random.py +171 -151
  92. brainstate/{compile → transform}/_unvmap.py +256 -159
  93. brainstate/transform/_util.py +286 -0
  94. brainstate/typing.py +837 -304
  95. brainstate/typing_test.py +780 -0
  96. brainstate/util/__init__.py +27 -50
  97. brainstate/util/_others.py +1025 -0
  98. brainstate/util/_others_test.py +962 -0
  99. brainstate/util/_pretty_pytree.py +1301 -0
  100. brainstate/util/_pretty_pytree_test.py +675 -0
  101. brainstate/util/{pretty_repr.py → _pretty_repr.py} +462 -328
  102. brainstate/util/_pretty_repr_test.py +696 -0
  103. brainstate/util/filter.py +945 -469
  104. brainstate/util/filter_test.py +912 -0
  105. brainstate/util/struct.py +910 -523
  106. brainstate/util/struct_test.py +602 -0
  107. {brainstate-0.1.10.dist-info → brainstate-0.2.1.dist-info}/METADATA +108 -91
  108. brainstate-0.2.1.dist-info/RECORD +111 -0
  109. {brainstate-0.1.10.dist-info → brainstate-0.2.1.dist-info}/licenses/LICENSE +202 -202
  110. brainstate/augment/__init__.py +0 -30
  111. brainstate/augment/_eval_shape.py +0 -99
  112. brainstate/augment/_mapping.py +0 -1060
  113. brainstate/augment/_mapping_test.py +0 -597
  114. brainstate/compile/__init__.py +0 -38
  115. brainstate/compile/_ad_checkpoint.py +0 -204
  116. brainstate/compile/_conditions.py +0 -256
  117. brainstate/compile/_make_jaxpr.py +0 -888
  118. brainstate/compile/_make_jaxpr_test.py +0 -156
  119. brainstate/compile/_util.py +0 -147
  120. brainstate/functional/__init__.py +0 -27
  121. brainstate/graph/_graph_node.py +0 -244
  122. brainstate/graph/_graph_node_test.py +0 -73
  123. brainstate/graph/_graph_operation_test.py +0 -563
  124. brainstate/init/__init__.py +0 -26
  125. brainstate/init/_base.py +0 -52
  126. brainstate/init/_generic.py +0 -244
  127. brainstate/init/_regular_inits.py +0 -105
  128. brainstate/init/_regular_inits_test.py +0 -50
  129. brainstate/nn/_inputs.py +0 -608
  130. brainstate/nn/_ltp.py +0 -28
  131. brainstate/nn/_neuron.py +0 -705
  132. brainstate/nn/_neuron_test.py +0 -161
  133. brainstate/nn/_others.py +0 -46
  134. brainstate/nn/_projection.py +0 -486
  135. brainstate/nn/_rate_rnns_test.py +0 -63
  136. brainstate/nn/_readout.py +0 -209
  137. brainstate/nn/_readout_test.py +0 -53
  138. brainstate/nn/_stp.py +0 -236
  139. brainstate/nn/_synapse.py +0 -505
  140. brainstate/nn/_synapse_test.py +0 -131
  141. brainstate/nn/_synaptic_projection.py +0 -423
  142. brainstate/nn/_synouts.py +0 -162
  143. brainstate/nn/_synouts_test.py +0 -57
  144. brainstate/nn/metrics.py +0 -388
  145. brainstate/optim/__init__.py +0 -38
  146. brainstate/optim/_base.py +0 -64
  147. brainstate/optim/_lr_scheduler.py +0 -448
  148. brainstate/optim/_lr_scheduler_test.py +0 -50
  149. brainstate/optim/_optax_optimizer.py +0 -152
  150. brainstate/optim/_optax_optimizer_test.py +0 -53
  151. brainstate/optim/_sgd_optimizer.py +0 -1104
  152. brainstate/random/_random_for_unit.py +0 -52
  153. brainstate/surrogate.py +0 -1957
  154. brainstate/transform.py +0 -23
  155. brainstate/util/caller.py +0 -98
  156. brainstate/util/others.py +0 -540
  157. brainstate/util/pretty_pytree.py +0 -945
  158. brainstate/util/pretty_pytree_test.py +0 -159
  159. brainstate/util/pretty_table.py +0 -2954
  160. brainstate/util/scaling.py +0 -258
  161. brainstate-0.1.10.dist-info/RECORD +0 -130
  162. {brainstate-0.1.10.dist-info → brainstate-0.2.1.dist-info}/WHEEL +0 -0
  163. {brainstate-0.1.10.dist-info → brainstate-0.2.1.dist-info}/top_level.txt +0 -0
@@ -0,0 +1,316 @@
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+ # Copyright 2024 BrainX Ecosystem Limited. All Rights Reserved.
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+ #
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+ # Licensed under the Apache License, Version 2.0 (the "License");
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+ # you may not use this file except in compliance with the License.
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+ # You may obtain a copy of the License at
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+ #
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+ # http://www.apache.org/licenses/LICENSE-2.0
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+ #
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+ # Unless required by applicable law or agreed to in writing, software
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+ # distributed under the License is distributed on an "AS IS" BASIS,
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+ # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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+ # See the License for the specific language governing permissions and
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+ # limitations under the License.
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+ # ==============================================================================
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+
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+ from collections.abc import Callable, Sequence
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+
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+ import jax
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+ import jax.numpy as jnp
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+ import numpy as np
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+
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+ from brainstate._compatible_import import to_concrete_aval, Tracer
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+ from brainstate._utils import set_module_as
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+ from ._error_if import jit_error_if
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+ from ._make_jaxpr import StatefulFunction
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+ from ._util import wrap_single_fun_in_multi_branches
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+
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+ __all__ = [
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+ 'cond', 'switch', 'ifelse',
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+ ]
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+
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+
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+ @set_module_as('brainstate.transform')
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+ def cond(pred, true_fun: Callable, false_fun: Callable, *operands):
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+ """
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+ Conditionally apply ``true_fun`` or ``false_fun``.
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+
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+ Parameters
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+ ----------
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+ pred : bool or array-like
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+ Boolean scalar selecting which branch to execute. Numeric inputs are
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+ treated as ``True`` when non-zero.
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+ true_fun : Callable
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+ Function that receives ``*operands`` when ``pred`` is ``True``.
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+ false_fun : Callable
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+ Function that receives ``*operands`` when ``pred`` is ``False``.
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+ *operands : Any
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+ Operands forwarded to either branch. May be any pytree of arrays,
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+ scalars, or nested containers thereof.
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+
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+ Returns
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+ -------
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+ Any
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+ Value returned by the selected branch with the same pytree structure
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+ as produced by ``true_fun`` or ``false_fun``.
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+
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+ Notes
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+ -----
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+ Provided the arguments are correctly typed, :func:`cond` has semantics
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+ that match the following Python implementation, where ``pred`` must be a
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+ scalar:
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+
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+ .. code-block:: python
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+
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+ >>> def cond(pred, true_fun, false_fun, *operands):
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+ ... if pred:
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+ ... return true_fun(*operands)
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+ ... return false_fun(*operands)
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+
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+ In contrast with :func:`jax.lax.select`, using :func:`cond` indicates that only
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+ one branch runs (subject to compiler rewrites and optimizations). When
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+ transformed with :func:`~jax.vmap` over a batch of predicates, :func:`cond` is
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+ converted to :func:`~jax.lax.select`.
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+
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+ Examples
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+ --------
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+ .. code-block:: python
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+
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+ >>> import brainstate
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+ >>>
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+ >>> def branch_true(x):
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+ ... return x + 1
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+ >>>
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+ >>> def branch_false(x):
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+ ... return x - 1
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+ >>>
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+ >>> brainstate.transform.cond(True, branch_true, branch_false, 3)
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+ """
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+ if not (callable(true_fun) and callable(false_fun)):
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+ raise TypeError("true_fun and false_fun arguments should be callable.")
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+
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+ if pred is None:
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+ raise TypeError("cond predicate is None")
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+ if isinstance(pred, Sequence) or np.ndim(pred) != 0:
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+ raise TypeError(f"Pred must be a scalar, got {pred} of " +
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+ (f"type {type(pred)}" if isinstance(pred, Sequence) else f"shape {np.shape(pred)}."))
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+
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+ # check pred
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+ try:
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+ pred_dtype = jax.dtypes.result_type(pred)
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+ except TypeError as err:
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+ raise TypeError("Pred type must be either boolean or number, got {}.".format(pred)) from err
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+ if pred_dtype.kind != 'b':
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+ if pred_dtype.kind in 'iuf':
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+ pred = pred != 0
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+ else:
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+ raise TypeError("Pred type must be either boolean or number, got {}.".format(pred_dtype))
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+
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+ # not jit
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+ if jax.config.jax_disable_jit and not isinstance(to_concrete_aval(pred), Tracer):
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+ if pred:
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+ return true_fun(*operands)
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+ else:
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+ return false_fun(*operands)
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+
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+ # evaluate jaxpr
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+ stateful_true = StatefulFunction(true_fun, name='cond:true').make_jaxpr(*operands)
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+ stateful_false = StatefulFunction(false_fun, name='conda:false').make_jaxpr(*operands)
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+
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+ # state trace and state values
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+ state_trace = (stateful_true.get_state_trace(*operands) +
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+ stateful_false.get_state_trace(*operands))
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+ read_state_vals = state_trace.get_read_state_values(True)
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+ write_state_vals = state_trace.get_write_state_values(True)
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+
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+ # wrap the functions
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+ true_fun = wrap_single_fun_in_multi_branches(
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+ stateful_true, state_trace, read_state_vals, True, stateful_true.get_arg_cache_key(*operands)
129
+ )
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+ false_fun = wrap_single_fun_in_multi_branches(
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+ stateful_false, state_trace, read_state_vals, True, stateful_false.get_arg_cache_key(*operands)
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+ )
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+
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+ # cond
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+ write_state_vals, out = jax.lax.cond(pred, true_fun, false_fun, write_state_vals, *operands)
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+
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+ # assign the written state values and restore the read state values
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+ state_trace.assign_state_vals_v2(read_state_vals, write_state_vals)
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+ return out
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+
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+
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+ @set_module_as('brainstate.transform')
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+ def switch(index, branches: Sequence[Callable], *operands):
144
+ """
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+ Apply exactly one branch from ``branches`` based on ``index``.
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+
147
+ Parameters
148
+ ----------
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+ index : int or array-like
150
+ Scalar integer specifying which branch to execute.
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+ branches : Sequence[Callable]
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+ Sequence of callables; each receives ``*operands``.
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+ *operands : Any
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+ Operands forwarded to the selected branch. May be any pytree of arrays,
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+ scalars, or nested containers thereof.
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+
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+ Returns
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+ -------
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+ Any
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+ Value returned by the selected branch with the same pytree structure
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+ as the selected callable.
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+
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+ Notes
164
+ -----
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+ If ``index`` is out of bounds, it is clamped to ``[0, len(branches) - 1]``.
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+ Conceptually, :func:`switch` behaves like:
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+
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+ .. code-block:: python
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+
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+ >>> def switch(index, branches, *operands):
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+ ... safe_index = clamp(0, index, len(branches) - 1)
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+ ... return branches[safe_index](*operands)
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+
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+ Internally this wraps XLA's `Conditional <https://www.tensorflow.org/xla/operation_semantics#conditional>`_
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+ operator. When transformed with :func:`~jax.vmap` over a batch of predicates,
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+ :func:`switch` is converted to :func:`~jax.lax.select`.
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+
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+ Examples
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+ --------
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+ .. code-block:: python
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+
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+ >>> import brainstate
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+ >>>
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+ >>> branches = (
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+ ... lambda x: x - 1,
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+ ... lambda x: x,
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+ ... lambda x: x + 1,
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+ ... )
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+ >>>
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+ >>> brainstate.transform.switch(2, branches, 3)
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+ """
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+ # check branches
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+ if not all(callable(branch) for branch in branches):
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+ raise TypeError("branches argument should be a sequence of callables.")
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+
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+ # check index
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+ if len(np.shape(index)) != 0:
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+ raise TypeError(f"Branch index must be scalar, got {index} of shape {np.shape(index)}.")
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+ try:
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+ index_dtype = jax.dtypes.result_type(index)
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+ except TypeError as err:
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+ msg = f"Index type must be an integer, got {index}."
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+ raise TypeError(msg) from err
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+ if index_dtype.kind not in 'iu':
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+ raise TypeError(f"Index type must be an integer, got {index} as {index_dtype}")
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+
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+ # format branches
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+ branches = tuple(branches)
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+ if len(branches) == 0:
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+ raise ValueError("Empty branch sequence")
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+ elif len(branches) == 1:
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+ return branches[0](*operands)
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+
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+ # format index
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+ index = jax.lax.convert_element_type(index, np.int32)
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+ lo = np.array(0, np.int32)
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+ hi = np.array(len(branches) - 1, np.int32)
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+ index = jax.lax.clamp(lo, index, hi)
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+
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+ # not jit
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+ if jax.config.jax_disable_jit and isinstance(jax.core.core.get_aval(index), jax.core.ConcreteArray):
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+ return branches[int(index)](*operands)
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+
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+ # evaluate jaxpr
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+ wrapped_branches = [StatefulFunction(branch, name='switch').make_jaxpr(*operands) for branch in branches]
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+
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+ # wrap the functions
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+ state_trace = (wrapped_branches[0].get_state_trace(*operands) +
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+ wrapped_branches[1].get_state_trace(*operands))
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+ state_trace.merge(*[wrapped_branch.get_state_trace(*operands)
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+ for wrapped_branch in wrapped_branches[2:]])
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+ read_state_vals = state_trace.get_read_state_values(True)
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+ write_state_vals = state_trace.get_write_state_values(True)
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+ branches = [
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+ wrap_single_fun_in_multi_branches(
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+ wrapped_branch, state_trace, read_state_vals, True, wrapped_branch.get_arg_cache_key(*operands)
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+ )
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+ for wrapped_branch in wrapped_branches
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+ ]
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+
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+ # switch
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+ write_state_vals, out = jax.lax.switch(index, branches, write_state_vals, *operands)
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+
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+ # write back state values or restore them
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+ state_trace.assign_state_vals_v2(read_state_vals, write_state_vals)
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+ return out
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+
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+
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+ @set_module_as('brainstate.transform')
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+ def ifelse(conditions, branches, *operands, check_cond: bool = True):
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+ """
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+ Represent multi-way ``if``/``elif``/``else`` control flow.
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+
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+ Parameters
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+ ----------
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+ conditions : Sequence[bool] or Array
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+ Sequence of mutually exclusive boolean predicates. When ``check_cond`` is
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+ ``True``, exactly one entry must evaluate to ``True``.
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+ branches : Sequence[Callable]
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+ Sequence of branch callables evaluated lazily. Must have the same length as
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+ ``conditions``, contain at least two callables, and each branch receives
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+ ``*operands`` when selected.
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+ *operands : Any
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+ Operands forwarded to the selected branch as positional arguments.
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+ check_cond : bool, default=True
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+ Whether to verify that exactly one condition evaluates to ``True``.
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+
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+ Returns
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+ -------
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+ Any
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+ Value produced by the branch corresponding to the active condition.
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+
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+ Notes
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+ -----
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+ When ``check_cond`` is ``True``, exactly one condition must evaluate to ``True``.
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+ A common pattern is to make the final condition ``True`` to encode a default
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+ branch.
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+
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+ Examples
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+ --------
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+ .. code-block:: python
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+
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+ >>> import brainstate
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+ >>>
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+ >>> def describe(a):
286
+ ... return brainstate.transform.ifelse(
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+ ... conditions=[a > 5, a > 0, True],
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+ ... branches=[
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+ ... lambda: "greater than five",
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+ ... lambda: "positive",
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+ ... lambda: "non-positive",
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+ ... ],
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+ ... )
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+ >>>
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+ >>> describe(7)
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+ >>> describe(-1)
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+ """
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+ # check branches
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+ if not all(callable(branch) for branch in branches):
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+ raise TypeError("branches argument should be a sequence of callables.")
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+
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+ # format branches
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+ branches = tuple(branches)
304
+ if len(branches) == 0:
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+ raise ValueError("Empty branch sequence")
306
+ elif len(branches) == 1:
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+ return branches[0](*operands)
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+ if len(conditions) != len(branches):
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+ raise ValueError("The number of conditions should be equal to the number of branches.")
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+
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+ # format index
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+ conditions = jnp.asarray(conditions, np.int32)
313
+ if check_cond:
314
+ jit_error_if(jnp.sum(conditions) != 1, "Only one condition can be True. But got {}.", err_arg=conditions)
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+ index = jnp.where(conditions, size=1, fill_value=len(conditions) - 1)[0][0]
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+ return switch(index, branches, *operands)