npm - molstar - Versions diffs - 2.3.7 → 2.3.8 - Mend

molstar 2.3.7 → 2.3.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1415) hide show

package/lib/mol-plugin-state/helpers/root-structure.js.map CHANGED Viewed

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package/lib/mol-plugin-state/helpers/structure-component.d.ts CHANGED Viewed

@@ -13,7 +13,7 @@ import { Script } from '../../mol-script/script';
 export declare const StaticStructureComponentTypes: readonly ["all", "polymer", "protein", "nucleic", "water", "ion", "lipid", "branched", "ligand", "non-standard", "coarse"];
 export declare type StaticStructureComponentType = (typeof StaticStructureComponentTypes)[number];
 export declare const StructureComponentParams: () => {
-    type: PD.Mapped<PD.NamedParams<Script, "script"> | PD.NamedParams<"polymer" | "water" | "branched" | "ligand" | "ion" | "all" | "protein" | "nucleic" | "lipid" | "non-standard" | "coarse", "static"> | PD.NamedParams<Expression, "expression"> | PD.NamedParams<StructureElement.Bundle, "bundle">>;
+    type: PD.Mapped<PD.NamedParams<Script, "script"> | PD.NamedParams<"polymer" | "water" | "branched" | "ligand" | "ion" | "lipid" | "all" | "coarse" | "protein" | "nucleic" | "non-standard", "static"> | PD.NamedParams<StructureElement.Bundle, "bundle"> | PD.NamedParams<Expression, "expression">>;
     nullIfEmpty: PD.Base<boolean | undefined>;
     label: PD.Text<string>;
 };
@@ -21,7 +21,7 @@ export declare type StructureComponentParams = PD.ValuesFor<ReturnType<typeof St
 export declare function createStructureComponent(a: Structure, params: StructureComponentParams, cache: {
     source: Structure;
     entry?: StructureQueryHelper.CacheEntry;
-}): SO.Molecule.Structure | StateObject<any, any>;
+}): StateObject<any, any> | SO.Molecule.Structure;
 export declare function updateStructureComponent(a: Structure, b: SO.Molecule.Structure, oldParams: StructureComponentParams, newParams: StructureComponentParams, cache: {
     source: Structure;
     entry?: StructureQueryHelper.CacheEntry;

package/lib/mol-plugin-state/helpers/structure-component.js CHANGED Viewed

@@ -86,7 +86,7 @@ export function createStructureComponent(a, params, cache) {
                     query = StructureSelectionQueries.coarse.query;
                     label = 'Coarse';
                     break;
-                default: throw new Error(params.type + " is a not valid complex element.");
+                default: throw new Error("".concat(params.type, " is a not valid complex element."));
             }
             var result = query(new QueryContext(a));
             component = Sel.unionStructure(result);
@@ -108,7 +108,7 @@ export function createStructureComponent(a, params, cache) {
     }
     if (params.nullIfEmpty && component.elementCount === 0)
         return StateObject.Null;
-    var props = { label: "" + (params.label || label || 'Component'), description: Structure.elementDescription(component) };
+    var props = { label: "".concat(params.label || label || 'Component'), description: Structure.elementDescription(component) };
     return new SO.Molecule.Structure(component, props);
 }
 export function updateStructureComponent(a, b, oldParams, newParams, cache) {
@@ -171,7 +171,7 @@ export function updateStructureComponent(a, b, oldParams, newParams, cache) {
     }
     if (oldParams.label !== newParams.label) {
         updated = true;
-        b.label = "" + (newParams.label || b.label);
+        b.label = "".concat(newParams.label || b.label);
     }
     return updated ? StateTransformer.UpdateResult.Updated : StateTransformer.UpdateResult.Unchanged;
 }

package/lib/mol-plugin-state/helpers/structure-component.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-plugin-state/helpers/structure-query.js CHANGED Viewed

@@ -41,7 +41,7 @@ var StructureQueryHelper;
     StructureQueryHelper.updateStructure = updateStructure;
     function updateStructureObject(obj, selection, label) {
         var s = Sel.unionStructure(selection);
-        obj.label = "" + (label || 'Selection');
+        obj.label = "".concat(label || 'Selection');
         obj.description = Structure.elementDescription(s);
         obj.data = s;
     }

package/lib/mol-plugin-state/helpers/structure-query.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"structure-query.js","sourceRoot":"","sources":["../../../src/mol-plugin-state/helpers/structure-query.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,EAAW,SAAS,EAAE,kBAAkB,IAAI,GAAG,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAC;AACxG,OAAO,EAAE,MAAM,EAAE,MAAM,yBAAyB,CAAC;AACjD,OAAO,EAAE,OAAO,EAAE,MAAM,yCAAyC,CAAC;AAGlE,OAAO,EAAE,oBAAoB,EAAE,CAAC;AAChC,IAAU,oBAAoB,CA6C7B;AA7CD,WAAU,oBAAoB;IAS1B,SAAgB,WAAW,CAAC,KAAiB,EAAE,KAA0B,EAAE,SAAoB;QAC3F,IAAI,KAAK,CAAC,gBAAgB,KAAK,SAAS;YAAE,OAAO,KAAK,CAAC;QACvD,IAAI,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,EAAE;YAClB,OAAO,CAAC,CAAC,KAAK,CAAC,MAAM,IAAI,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC;SACjE;QACD,OAAO,KAAK,CAAC,UAAU,KAAK,KAAK,CAAC;IACtC,CAAC;IANe,gCAAW,cAM1B,CAAA;IAED,SAAgB,MAAM,CAAC,SAAoB,EAAE,KAA0B;QACnE,IAAM,MAAM,GAAG,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC;QACjD,IAAM,UAAU,GAAG,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;QACzE,IAAM,QAAQ,GAAG,OAAO,CAAM,UAAU,CAAC,CAAC;QAE1C,OAAO,EAAE,MAAM,QAAA,EAAE,UAAU,YAAA,EAAE,QAAQ,UAAA,EAAE,iBAAiB,EAAE,SAAS,EAAE,gBAAgB,EAAE,SAAS,EAAE,CAAC;IACvG,CAAC;IANe,2BAAM,SAMrB,CAAA;IAED,SAAgB,GAAG,CAAC,KAAiB,EAAE,SAAoB;QACvD,OAAO,KAAK,CAAC,QAAQ,CAAC,IAAI,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC;IACvD,CAAC;IAFe,wBAAG,MAElB,CAAA;IAED,SAAgB,YAAY,CAAC,SAAoB,EAAE,KAA0B;QACzE,IAAM,KAAK,GAAG,MAAM,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;QACvC,OAAO,EAAE,KAAK,OAAA,EAAE,SAAS,EAAE,GAAG,CAAC,KAAK,EAAE,SAAS,CAAC,EAAE,CAAC;IACvD,CAAC;IAHe,iCAAY,eAG3B,CAAA;IAED,SAAgB,eAAe,CAAC,KAAiB,EAAE,SAAoB;QACnE,KAAK,CAAC,gBAAgB,GAAG,SAAS,CAAC;QACnC,OAAO,KAAK,CAAC,QAAQ,CAAC,IAAI,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC;IACvD,CAAC;IAHe,oCAAe,kBAG9B,CAAA;IAED,SAAgB,qBAAqB,CAAC,GAA0B,EAAE,SAAc,EAAE,KAAc;QAC5F,IAAM,CAAC,GAAG,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,CAAC;QACxC,GAAG,CAAC,KAAK,GAAG,~~MAAG~~,KAAK,IAAI,WAAW,CAAE,CAAC;QACtC,GAAG,CAAC,WAAW,GAAG,SAAS,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAAC;QAClD,GAAG,CAAC,IAAI,GAAG,CAAC,CAAC;IACjB,CAAC;IALe,0CAAqB,wBAKpC,CAAA;AACL,CAAC,EA7CS,oBAAoB,KAApB,oBAAoB,QA6C7B"}
1	+ {"version":3,"file":"structure-query.js","sourceRoot":"","sources":["../../../src/mol-plugin-state/helpers/structure-query.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAGH,OAAO,EAAW,SAAS,EAAE,kBAAkB,IAAI,GAAG,EAAE,YAAY,EAAE,MAAM,2BAA2B,CAAC;AACxG,OAAO,EAAE,MAAM,EAAE,MAAM,yBAAyB,CAAC;AACjD,OAAO,EAAE,OAAO,EAAE,MAAM,yCAAyC,CAAC;AAGlE,OAAO,EAAE,oBAAoB,EAAE,CAAC;AAChC,IAAU,oBAAoB,CA6C7B;AA7CD,WAAU,oBAAoB;IAS1B,SAAgB,WAAW,CAAC,KAAiB,EAAE,KAA0B,EAAE,SAAoB;QAC3F,IAAI,KAAK,CAAC,gBAAgB,KAAK,SAAS;YAAE,OAAO,KAAK,CAAC;QACvD,IAAI,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,EAAE;YAClB,OAAO,CAAC,CAAC,KAAK,CAAC,MAAM,IAAI,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC;SACjE;QACD,OAAO,KAAK,CAAC,UAAU,KAAK,KAAK,CAAC;IACtC,CAAC;IANe,gCAAW,cAM1B,CAAA;IAED,SAAgB,MAAM,CAAC,SAAoB,EAAE,KAA0B;QACnE,IAAM,MAAM,GAAG,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,CAAC;QACjD,IAAM,UAAU,GAAG,MAAM,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;QACzE,IAAM,QAAQ,GAAG,OAAO,CAAM,UAAU,CAAC,CAAC;QAE1C,OAAO,EAAE,MAAM,QAAA,EAAE,UAAU,YAAA,EAAE,QAAQ,UAAA,EAAE,iBAAiB,EAAE,SAAS,EAAE,gBAAgB,EAAE,SAAS,EAAE,CAAC;IACvG,CAAC;IANe,2BAAM,SAMrB,CAAA;IAED,SAAgB,GAAG,CAAC,KAAiB,EAAE,SAAoB;QACvD,OAAO,KAAK,CAAC,QAAQ,CAAC,IAAI,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC;IACvD,CAAC;IAFe,wBAAG,MAElB,CAAA;IAED,SAAgB,YAAY,CAAC,SAAoB,EAAE,KAA0B;QACzE,IAAM,KAAK,GAAG,MAAM,CAAC,SAAS,EAAE,KAAK,CAAC,CAAC;QACvC,OAAO,EAAE,KAAK,OAAA,EAAE,SAAS,EAAE,GAAG,CAAC,KAAK,EAAE,SAAS,CAAC,EAAE,CAAC;IACvD,CAAC;IAHe,iCAAY,eAG3B,CAAA;IAED,SAAgB,eAAe,CAAC,KAAiB,EAAE,SAAoB;QACnE,KAAK,CAAC,gBAAgB,GAAG,SAAS,CAAC;QACnC,OAAO,KAAK,CAAC,QAAQ,CAAC,IAAI,YAAY,CAAC,SAAS,CAAC,CAAC,CAAC;IACvD,CAAC;IAHe,oCAAe,kBAG9B,CAAA;IAED,SAAgB,qBAAqB,CAAC,GAA0B,EAAE,SAAc,EAAE,KAAc;QAC5F,IAAM,CAAC,GAAG,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,CAAC;QACxC,GAAG,CAAC,KAAK,GAAG,UAAG,KAAK,IAAI,WAAW,CAAE,CAAC;QACtC,GAAG,CAAC,WAAW,GAAG,SAAS,CAAC,kBAAkB,CAAC,CAAC,CAAC,CAAC;QAClD,GAAG,CAAC,IAAI,GAAG,CAAC,CAAC;IACjB,CAAC;IALe,0CAAqB,wBAKpC,CAAA;AACL,CAAC,EA7CS,oBAAoB,KAApB,oBAAoB,QA6C7B"}

package/lib/mol-plugin-state/helpers/structure-selection-query.js CHANGED Viewed

@@ -531,8 +531,8 @@ export function ResidueQuery(_a, category, priority) {
     var names = _a[0], label = _a[1];
     if (priority === void 0) { priority = 0; }
     var description = names.length === 1 && !StandardResidues.has(names[0])
-        ? "[" + names[0] + "] " + label
-        : label + " (" + names.join(', ') + ")";
+        ? "[".concat(names[0], "] ").concat(label)
+        : "".concat(label, " (").concat(names.join(', '), ")");
     return StructureSelectionQuery(description, MS.struct.modifier.union([
         MS.struct.generator.atomGroups({
             'residue-test': MS.core.set.has([MS.set.apply(MS, names), MS.ammp('auth_comp_id')])
@@ -541,7 +541,7 @@ export function ResidueQuery(_a, category, priority) {
 }
 export function ElementSymbolQuery(_a, category, priority) {
     var names = _a[0], label = _a[1];
-    var description = label + " (" + names.join(', ') + ")";
+    var description = "".concat(label, " (").concat(names.join(', '), ")");
     return StructureSelectionQuery(description, MS.struct.modifier.union([
         MS.struct.generator.atomGroups({
             'atom-test': MS.core.set.has([MS.set.apply(MS, names), MS.acp('elementSymbol')])
@@ -550,8 +550,8 @@ export function ElementSymbolQuery(_a, category, priority) {
 }
 export function EntityDescriptionQuery(_a, category, priority) {
     var names = _a[0], label = _a[1];
-    var description = "" + label;
-    return StructureSelectionQuery("" + label, MS.struct.modifier.union([
+    var description = "".concat(label);
+    return StructureSelectionQuery("".concat(label), MS.struct.modifier.union([
         MS.struct.generator.atomGroups({
             'entity-test': MS.core.list.equal([MS.list.apply(MS, names), MS.ammp('entityDescription')])
         })

package/lib/mol-plugin-state/helpers/structure-selection-query.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-plugin-state/manager/animation.js CHANGED Viewed

@@ -80,7 +80,7 @@ var PluginAnimationManager = /** @class */ (function (_super) {
     };
     PluginAnimationManager.prototype.register = function (animation) {
         if (this.map.has(animation.name)) {
-            this.context.log.error("Animation '" + animation.name + "' is already registered.");
+            this.context.log.error("Animation '".concat(animation.name, "' is already registered."));
             return;
         }
         this._params = void 0;

package/lib/mol-plugin-state/manager/animation.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/lib/mol-plugin-state/manager/interactivity.d.ts CHANGED Viewed

@@ -37,7 +37,7 @@ declare class InteractivityManager extends StatefulPluginComponent<Interactivity
 }
 declare namespace InteractivityManager {
     const Params: {
-        granularity: PD.Select<"residue" | "entity" | "model" | "chain" | "element" | "structure" | "operator" | "elementInstances" | "residueInstances" | "chainInstances">;
+        granularity: PD.Select<"residue" | "entity" | "operator" | "model" | "element" | "structure" | "chain" | "elementInstances" | "residueInstances" | "chainInstances">;
     };
     type Params = typeof Params;
     type Props = PD.Values<Params>;

package/lib/mol-plugin-state/manager/loci-label.js CHANGED Viewed

@@ -80,7 +80,7 @@ var LociLabelManager = /** @class */ (function () {
                 var count = group.length;
                 var entry = count > 1 && group[0] !== group[1]
                     ? hash : group[0];
-                _this.labels.push(count === 1 ? entry : entry + " <small>|| \u00D7 " + count + "</small>");
+                _this.labels.push(count === 1 ? entry : "".concat(entry, " <small>|| \u00D7 ").concat(count, "</small>"));
             });
             this.isDirty = false;
         }

package/lib/mol-plugin-state/manager/loci-label.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/mol-plugin-state/manager/snapshots.js CHANGED Viewed

@@ -236,7 +236,7 @@ var PluginStateSnapshotManager = /** @class */ (function (_super) {
                         _b = _a[_i], asset = _b.asset, file = _b.file;
                         assets.push([asset.id, asset]);
                         _c = zipDataObj;
-                        _d = "assets/" + asset.id;
+                        _d = "assets/".concat(asset.id);
                         _e = Uint8Array.bind;
                         return [4 /*yield*/, file.arrayBuffer()];
                     case 3:
@@ -314,7 +314,7 @@ var PluginStateSnapshotManager = /** @class */ (function (_super) {
                     case 7: return [3 /*break*/, 9];
                     case 8:
                         e_1 = _d.sent();
-                        this.plugin.log.error("Reading state: " + e_1);
+                        this.plugin.log.error("Reading state: ".concat(e_1));
                         return [3 /*break*/, 9];
                     case 9: return [2 /*return*/];
                 }

package/lib/mol-plugin-state/manager/snapshots.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-plugin-state/manager/structure/component.d.ts CHANGED Viewed

@@ -100,11 +100,11 @@ declare namespace StructureComponentManager {
         selection: PD.Select<StructureSelectionQuery>;
         action: PD.Mapped<PD.NamedParams<PD.Normalize<{
             color: import("../../../mol-util/color").Color;
-        }>, "color"> | PD.NamedParams<PD.Normalize<{
+        }>, "color"> | PD.NamedParams<PD.Normalize<unknown>, "reset"> | PD.NamedParams<PD.Normalize<{
             value: number;
         }>, "transparency"> | PD.NamedParams<PD.Normalize<{
             excludeGroups: ("one" | "two" | "three" | "four" | "five" | "six")[];
-        }>, "clipping"> | PD.NamedParams<PD.Normalize<unknown>, "reset">>;
+        }>, "clipping">>;
         representations: PD.MultiSelect<string>;
     };
     type ThemeParams = PD.Values<ReturnType<typeof getThemeParams>>;

package/lib/mol-plugin-state/manager/structure/hierarchy.js CHANGED Viewed

@@ -327,7 +327,7 @@ export { StructureHierarchyManager };
             if (((_e = (_d = s.model) === null || _d === void 0 ? void 0 : _d.trajectory) === null || _e === void 0 ? void 0 : _e.models) && s.model.trajectory.models.length === 1)
                 return entryId;
             if (s.model)
-                return ((_f = s.model.cell.obj) === null || _f === void 0 ? void 0 : _f.label) + " | " + entryId;
+                return "".concat((_f = s.model.cell.obj) === null || _f === void 0 ? void 0 : _f.label, " | ").concat(entryId);
             return entryId;
         }
         var p = structures[0];
@@ -340,7 +340,7 @@ export { StructureHierarchyManager };
                 break;
             }
         }
-        return sameTraj && t ? ((_j = t.cell.obj) === null || _j === void 0 ? void 0 : _j.label) + " | " + structures.length + " structures" : structures.length + " structures";
+        return sameTraj && t ? "".concat((_j = t.cell.obj) === null || _j === void 0 ? void 0 : _j.label, " | ").concat(structures.length, " structures") : "".concat(structures.length, " structures");
     }
     StructureHierarchyManager.getSelectedStructuresDescription = getSelectedStructuresDescription;
 })(StructureHierarchyManager || (StructureHierarchyManager = {}));

package/lib/mol-plugin-state/manager/structure/hierarchy.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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