molstar 2.3.7 → 2.3.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/viewer/molstar.css +1 -2
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.js +1 -1
- package/lib/apps/docking-viewer/index.js.map +1 -1
- package/lib/apps/viewer/index.d.ts +1 -1
- package/lib/apps/viewer/index.js +3 -3
- package/lib/apps/viewer/index.js.map +1 -1
- package/lib/cli/chem-comp-dict/create-ions.js +1 -1
- package/lib/cli/chem-comp-dict/create-ions.js.map +1 -1
- package/lib/cli/chem-comp-dict/create-table.js +3 -3
- package/lib/cli/chem-comp-dict/create-table.js.map +1 -1
- package/lib/cli/chem-comp-dict/util.js +2 -2
- package/lib/cli/chem-comp-dict/util.js.map +1 -1
- package/lib/cli/cif2bcif/converter.js +2 -2
- package/lib/cli/cif2bcif/converter.js.map +1 -1
- package/lib/cli/cifschema/index.js +12 -12
- package/lib/cli/cifschema/index.js.map +1 -1
- package/lib/cli/cifschema/util/cif-dic.js +19 -19
- package/lib/cli/cifschema/util/cif-dic.js.map +1 -1
- package/lib/cli/cifschema/util/generate.js +21 -21
- package/lib/cli/cifschema/util/generate.js.map +1 -1
- package/lib/cli/cifschema/util/schema.js +1 -1
- package/lib/cli/cifschema/util/schema.js.map +1 -1
- package/lib/cli/lipid-params/index.js +3 -3
- package/lib/cli/lipid-params/index.js.map +1 -1
- package/lib/cli/state-docs/index.js +4 -4
- package/lib/cli/state-docs/index.js.map +1 -1
- package/lib/cli/state-docs/pd-to-md.js +10 -10
- package/lib/cli/state-docs/pd-to-md.js.map +1 -1
- package/lib/cli/structure-info/model.js +18 -18
- package/lib/cli/structure-info/model.js.map +1 -1
- package/lib/cli/structure-info/volume.js +1 -1
- package/lib/cli/structure-info/volume.js.map +1 -1
- package/lib/commonjs/apps/docking-viewer/index.js +1 -1
- package/lib/commonjs/apps/docking-viewer/index.js.map +1 -1
- package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -2
- package/lib/commonjs/apps/viewer/index.d.ts +7 -7
- package/lib/commonjs/apps/viewer/index.js +3 -3
- package/lib/commonjs/apps/viewer/index.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-table.js +3 -3
- package/lib/commonjs/cli/chem-comp-dict/create-table.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
- package/lib/commonjs/cli/chem-comp-dict/util.js +2 -2
- package/lib/commonjs/cli/chem-comp-dict/util.js.map +1 -1
- package/lib/commonjs/cli/cif2bcif/converter.js +2 -2
- package/lib/commonjs/cli/cif2bcif/converter.js.map +1 -1
- package/lib/commonjs/cli/cifschema/index.js +12 -12
- package/lib/commonjs/cli/cifschema/index.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +19 -19
- package/lib/commonjs/cli/cifschema/util/cif-dic.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/generate.js +21 -21
- package/lib/commonjs/cli/cifschema/util/generate.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
- package/lib/commonjs/cli/cifschema/util/schema.js.map +1 -1
- package/lib/commonjs/cli/lipid-params/index.js +3 -3
- package/lib/commonjs/cli/lipid-params/index.js.map +1 -1
- package/lib/commonjs/cli/state-docs/index.js +4 -4
- package/lib/commonjs/cli/state-docs/index.js.map +1 -1
- package/lib/commonjs/cli/state-docs/pd-to-md.js +10 -10
- package/lib/commonjs/cli/state-docs/pd-to-md.js.map +1 -1
- package/lib/commonjs/cli/structure-info/model.js +18 -18
- package/lib/commonjs/cli/structure-info/model.js.map +1 -1
- package/lib/commonjs/cli/structure-info/volume.js +1 -1
- package/lib/commonjs/cli/structure-info/volume.js.map +1 -1
- package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
- package/lib/commonjs/examples/basic-wrapper/superposition.js.map +1 -1
- package/lib/commonjs/examples/domain-annotation-server/mapping.js +2 -2
- package/lib/commonjs/examples/domain-annotation-server/mapping.js.map +1 -1
- package/lib/commonjs/examples/domain-annotation-server/server.js +3 -3
- package/lib/commonjs/examples/domain-annotation-server/server.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +3 -3
- package/lib/commonjs/examples/proteopedia-wrapper/annotation.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +2 -2
- package/lib/commonjs/examples/proteopedia-wrapper/index.js.map +1 -1
- package/lib/commonjs/examples/task.js +6 -6
- package/lib/commonjs/examples/task.js.map +1 -1
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js +2 -2
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js.map +1 -1
- package/lib/commonjs/extensions/anvil/behavior.d.ts +2 -2
- package/lib/commonjs/extensions/anvil/representation.d.ts +5 -5
- package/lib/commonjs/extensions/anvil/representation.js +1 -1
- package/lib/commonjs/extensions/anvil/representation.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/model.js +15 -15
- package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/representation.d.ts +2 -2
- package/lib/commonjs/extensions/cellpack/state.js +5 -5
- package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/util.js +4 -4
- package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +6 -6
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +7 -7
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js.map +1 -1
- package/lib/commonjs/extensions/g3d/data.js +2 -2
- package/lib/commonjs/extensions/g3d/data.js.map +1 -1
- package/lib/commonjs/extensions/g3d/model.js +2 -2
- package/lib/commonjs/extensions/g3d/model.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/controls.js +2 -2
- package/lib/commonjs/extensions/geo-export/controls.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/glb-exporter.js +1 -1
- package/lib/commonjs/extensions/geo-export/glb-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/obj-exporter.js +3 -3
- package/lib/commonjs/extensions/geo-export/obj-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/stl-exporter.js +1 -1
- package/lib/commonjs/extensions/geo-export/stl-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +5 -5
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js.map +1 -1
- package/lib/commonjs/extensions/mp4-export/controls.js +1 -1
- package/lib/commonjs/extensions/mp4-export/controls.js.map +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js.map +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -6
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +3 -3
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +2 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +7 -7
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -3
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +11 -11
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +10 -10
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +8 -8
- package/lib/commonjs/mol-canvas3d/canvas3d.js +3 -3
- package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/controls/trackball.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +3 -3
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +1 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/passes/wboit.js +1 -1
- package/lib/commonjs/mol-canvas3d/passes/wboit.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/util.js +1 -1
- package/lib/commonjs/mol-canvas3d/util.js.map +1 -1
- package/lib/commonjs/mol-data/db/table.js +1 -1
- package/lib/commonjs/mol-data/db/table.js.map +1 -1
- package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js +1 -1
- package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js.map +1 -1
- package/lib/commonjs/mol-data/int/impl/ordered-set.d.ts +3 -3
- package/lib/commonjs/mol-data/int/impl/sorted-array.d.ts +1 -1
- package/lib/commonjs/mol-data/int/impl/sorted-array.js +2 -2
- package/lib/commonjs/mol-data/int/impl/sorted-array.js.map +1 -1
- package/lib/commonjs/mol-data/int/tuple.js +1 -1
- package/lib/commonjs/mol-data/int/tuple.js.map +1 -1
- package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js +1 -1
- package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/base.d.ts +3 -3
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +3 -3
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +3 -3
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
- package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
- package/lib/commonjs/mol-geo/primitive/polyhedron.js.map +1 -1
- package/lib/commonjs/mol-gl/_spec/gl.shim.js +4 -4
- package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
- package/lib/commonjs/mol-gl/compute/grid3d.js +3 -3
- package/lib/commonjs/mol-gl/compute/grid3d.js.map +1 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +4 -4
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js.map +1 -1
- package/lib/commonjs/mol-gl/renderable/util.js +1 -1
- package/lib/commonjs/mol-gl/renderable/util.js.map +1 -1
- package/lib/commonjs/mol-gl/renderer.d.ts +2 -2
- package/lib/commonjs/mol-gl/scene.js +1 -1
- package/lib/commonjs/mol-gl/scene.js.map +1 -1
- package/lib/commonjs/mol-gl/shader-code.js +8 -8
- package/lib/commonjs/mol-gl/shader-code.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/buffer.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/buffer.js +5 -5
- package/lib/commonjs/mol-gl/webgl/buffer.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/compat.js +3 -3
- package/lib/commonjs/mol-gl/webgl/compat.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/context.js +2 -2
- package/lib/commonjs/mol-gl/webgl/context.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/framebuffer.js +1 -1
- package/lib/commonjs/mol-gl/webgl/framebuffer.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/program.js +14 -12
- package/lib/commonjs/mol-gl/webgl/program.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/render-item.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/render-item.js +6 -3
- package/lib/commonjs/mol-gl/webgl/render-item.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/resources.js +1 -1
- package/lib/commonjs/mol-gl/webgl/resources.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/shader.js +3 -3
- package/lib/commonjs/mol-gl/webgl/shader.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/state.d.ts +4 -1
- package/lib/commonjs/mol-gl/webgl/state.js +25 -1
- package/lib/commonjs/mol-gl/webgl/state.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/texture.js +2 -2
- package/lib/commonjs/mol-gl/webgl/texture.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/uniform.js +2 -2
- package/lib/commonjs/mol-gl/webgl/uniform.js.map +1 -1
- package/lib/commonjs/mol-io/common/file-handle.js +1 -1
- package/lib/commonjs/mol-io/common/file-handle.js.map +1 -1
- package/lib/commonjs/mol-io/common/typed-array.js +1 -1
- package/lib/commonjs/mol-io/common/typed-array.js.map +1 -1
- package/lib/commonjs/mol-io/reader/ccp4/parser.js +1 -1
- package/lib/commonjs/mol-io/reader/ccp4/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/binary/parser.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/binary/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/data-model.js +7 -7
- package/lib/commonjs/mol-io/reader/cif/data-model.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +14 -14
- package/lib/commonjs/mol-io/reader/cif/schema.js +7 -7
- package/lib/commonjs/mol-io/reader/cif/schema.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/text/parser.js +2 -2
- package/lib/commonjs/mol-io/reader/cif/text/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
- package/lib/commonjs/mol-io/reader/dcd/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.js +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.js.map +1 -1
- package/lib/commonjs/mol-io/reader/result.js +1 -1
- package/lib/commonjs/mol-io/reader/result.js.map +1 -1
- package/lib/commonjs/mol-io/writer/cif/encoder/text.js +3 -3
- package/lib/commonjs/mol-io/writer/cif/encoder/text.js.map +1 -1
- package/lib/commonjs/mol-io/writer/cif/encoder.js +5 -5
- package/lib/commonjs/mol-io/writer/cif/encoder.js.map +1 -1
- package/lib/commonjs/mol-io/writer/mol/encoder.js +4 -4
- package/lib/commonjs/mol-io/writer/mol/encoder.js.map +1 -1
- package/lib/commonjs/mol-io/writer/mol2/encoder.js +6 -6
- package/lib/commonjs/mol-io/writer/mol2/encoder.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +1 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/construction.js +8 -8
- package/lib/commonjs/mol-math/geometry/spacegroup/construction.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/tables.js +1 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/tables.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/symmetry-operator.js +4 -4
- package/lib/commonjs/mol-math/geometry/symmetry-operator.js.map +1 -1
- package/lib/commonjs/mol-math/graph/inter-unit-graph.js +2 -2
- package/lib/commonjs/mol-math/graph/inter-unit-graph.js.map +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.js.map +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec2.js +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec2.js.map +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec4.js +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec4.js.map +1 -1
- package/lib/commonjs/mol-model/loci.d.ts +20 -20
- package/lib/commonjs/mol-model/sequence/sequence.js +2 -2
- package/lib/commonjs/mol-model/sequence/sequence.js.map +1 -1
- package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/export/categories/atom_site.js +2 -2
- package/lib/commonjs/mol-model/structure/export/categories/atom_site.js.map +1 -1
- package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js +1 -1
- package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js.map +1 -1
- package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +1 -1
- package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js.map +1 -1
- package/lib/commonjs/mol-model/structure/export/mmcif.js +1 -1
- package/lib/commonjs/mol-model/structure/export/mmcif.js.map +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/atomic/bonds.js +2 -2
- package/lib/commonjs/mol-model/structure/model/properties/atomic/bonds.js.map +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/symmetry.js +3 -3
- package/lib/commonjs/mol-model/structure/model/properties/symmetry.js.map +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +2 -2
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js.map +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/coarse-keys.js +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/coarse-keys.js.map +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/residue-set.js +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/residue-set.js.map +1 -1
- package/lib/commonjs/mol-model/structure/query/context.js +1 -1
- package/lib/commonjs/mol-model/structure/query/context.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/compute.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/compute.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/element/loci.js +2 -2
- package/lib/commonjs/mol-model/structure/structure/element/loci.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/element/util.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/element/util.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/properties.d.ts +2 -2
- package/lib/commonjs/mol-model/structure/structure/properties.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/properties.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/structure.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/structure.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/symmetry.js +3 -3
- package/lib/commonjs/mol-model/structure/structure/symmetry.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit.d.ts +4 -4
- package/lib/commonjs/mol-model/structure/structure/util/superposition-db-mapping.js +1 -1
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- package/lib/mol-repr/volume/registry.d.ts +2 -2
- package/lib/mol-repr/volume/registry.js +1 -1
- package/lib/mol-repr/volume/registry.js.map +1 -1
- package/lib/mol-repr/volume/slice.d.ts +6 -6
- package/lib/mol-script/language/expression-formatter.js +6 -6
- package/lib/mol-script/language/expression-formatter.js.map +1 -1
- package/lib/mol-script/language/helpers.js +4 -4
- package/lib/mol-script/language/helpers.js.map +1 -1
- package/lib/mol-script/language/parser.js +1 -1
- package/lib/mol-script/language/parser.js.map +1 -1
- package/lib/mol-script/language/symbol-table/structure-query.js +3 -3
- package/lib/mol-script/language/symbol-table/structure-query.js.map +1 -1
- package/lib/mol-script/language/symbol.js +1 -1
- package/lib/mol-script/language/symbol.js.map +1 -1
- package/lib/mol-script/runtime/query/base.js +2 -2
- package/lib/mol-script/runtime/query/base.js.map +1 -1
- package/lib/mol-script/script/mol-script/symbols.js +3 -3
- package/lib/mol-script/script/mol-script/symbols.js.map +1 -1
- package/lib/mol-state/state/builder.js +1 -1
- package/lib/mol-state/state/builder.js.map +1 -1
- package/lib/mol-state/state.js +7 -7
- package/lib/mol-state/state.js.map +1 -1
- package/lib/mol-state/transformer.js +3 -3
- package/lib/mol-state/transformer.js.map +1 -1
- package/lib/mol-state/tree/transient.js +3 -3
- package/lib/mol-state/tree/transient.js.map +1 -1
- package/lib/mol-task/execution/progress.js +4 -4
- package/lib/mol-task/execution/progress.js.map +1 -1
- package/lib/mol-task/task.js +1 -1
- package/lib/mol-task/task.js.map +1 -1
- package/lib/mol-task/util/multistep.js +1 -1
- package/lib/mol-task/util/multistep.js.map +1 -1
- package/lib/mol-task/util/scheduler.d.ts +1 -0
- package/lib/mol-task/util/user-timing.js +3 -3
- package/lib/mol-task/util/user-timing.js.map +1 -1
- package/lib/mol-theme/color/chain-id.js +1 -1
- package/lib/mol-theme/color/chain-id.js.map +1 -1
- package/lib/mol-theme/color/element-symbol.d.ts +4 -4
- package/lib/mol-theme/color/entity-id.js +1 -1
- package/lib/mol-theme/color/entity-id.js.map +1 -1
- package/lib/mol-theme/color/entity-source.js +4 -4
- package/lib/mol-theme/color/entity-source.js.map +1 -1
- package/lib/mol-theme/color/operator-hkl.js +2 -2
- package/lib/mol-theme/color/operator-hkl.js.map +1 -1
- package/lib/mol-theme/color.d.ts +2 -2
- package/lib/mol-theme/label.js +27 -27
- package/lib/mol-theme/label.js.map +1 -1
- package/lib/mol-theme/theme.js +3 -3
- package/lib/mol-theme/theme.js.map +1 -1
- package/lib/mol-util/assets.js +3 -3
- package/lib/mol-util/assets.js.map +1 -1
- package/lib/mol-util/color/color.js +2 -2
- package/lib/mol-util/color/color.js.map +1 -1
- package/lib/mol-util/color/lists.js +1 -1
- package/lib/mol-util/color/lists.js.map +1 -1
- package/lib/mol-util/color/palette.js +2 -2
- package/lib/mol-util/color/palette.js.map +1 -1
- package/lib/mol-util/color/scale.d.ts +1 -1
- package/lib/mol-util/console-logger.js +9 -9
- package/lib/mol-util/console-logger.js.map +1 -1
- package/lib/mol-util/data-source.js +5 -5
- package/lib/mol-util/data-source.js.map +1 -1
- package/lib/mol-util/download.js +1 -1
- package/lib/mol-util/download.js.map +1 -1
- package/lib/mol-util/graphql-client.js +2 -2
- package/lib/mol-util/graphql-client.js.map +1 -1
- package/lib/mol-util/index.js +2 -2
- package/lib/mol-util/index.js.map +1 -1
- package/lib/mol-util/monadic-parser.js +4 -4
- package/lib/mol-util/monadic-parser.js.map +1 -1
- package/lib/mol-util/now.js +4 -4
- package/lib/mol-util/now.js.map +1 -1
- package/lib/mol-util/object.js +1 -1
- package/lib/mol-util/object.js.map +1 -1
- package/lib/mol-util/performance-monitor.js +4 -4
- package/lib/mol-util/performance-monitor.js.map +1 -1
- package/lib/mol-util/string.js +3 -3
- package/lib/mol-util/string.js.map +1 -1
- package/lib/mol-util/url.js +2 -2
- package/lib/mol-util/url.js.map +1 -1
- package/lib/mol-util/zip/deflate.js +1 -1
- package/lib/mol-util/zip/deflate.js.map +1 -1
- package/lib/mol-util/zip/inflate.js +1 -1
- package/lib/mol-util/zip/inflate.js.map +1 -1
- package/lib/mol-util/zip/zip.js +1 -1
- package/lib/mol-util/zip/zip.js.map +1 -1
- package/lib/perf-tests/mol-script.js +1 -1
- package/lib/perf-tests/mol-script.js.map +1 -1
- package/lib/perf-tests/sets.js +1 -1
- package/lib/perf-tests/sets.js.map +1 -1
- package/lib/perf-tests/sort.js +1 -1
- package/lib/perf-tests/sort.js.map +1 -1
- package/lib/perf-tests/string-builder.js +2 -2
- package/lib/perf-tests/string-builder.js.map +1 -1
- package/lib/perf-tests/structure.js +7 -7
- package/lib/perf-tests/structure.js.map +1 -1
- package/lib/perf-tests/test-xtc.js +1 -1
- package/lib/perf-tests/test-xtc.js.map +1 -1
- package/lib/servers/common/file-handle.js +1 -1
- package/lib/servers/common/file-handle.js.map +1 -1
- package/lib/servers/common/util.js +1 -1
- package/lib/servers/common/util.js.map +1 -1
- package/lib/servers/model/config.d.ts +2 -2
- package/lib/servers/model/config.js +4 -4
- package/lib/servers/model/config.js.map +1 -1
- package/lib/servers/model/preprocess/master.js +1 -1
- package/lib/servers/model/preprocess/master.js.map +1 -1
- package/lib/servers/model/preprocess/parallel.js +2 -2
- package/lib/servers/model/preprocess/parallel.js.map +1 -1
- package/lib/servers/model/preprocess/util.js +3 -3
- package/lib/servers/model/preprocess/util.js.map +1 -1
- package/lib/servers/model/properties/providers/pdbe.js +5 -5
- package/lib/servers/model/properties/providers/pdbe.js.map +1 -1
- package/lib/servers/model/property-provider.js +2 -2
- package/lib/servers/model/property-provider.js.map +1 -1
- package/lib/servers/model/query.js +1 -1
- package/lib/servers/model/query.js.map +1 -1
- package/lib/servers/model/server/api-local.js +2 -2
- package/lib/servers/model/server/api-local.js.map +1 -1
- package/lib/servers/model/server/api-schema.js +2 -2
- package/lib/servers/model/server/api-schema.js.map +1 -1
- package/lib/servers/model/server/api-web-multiple.js +1 -1
- package/lib/servers/model/server/api-web-multiple.js.map +1 -1
- package/lib/servers/model/server/api-web.js +4 -4
- package/lib/servers/model/server/api-web.js.map +1 -1
- package/lib/servers/model/server/api.js +1 -1
- package/lib/servers/model/server/api.js.map +1 -1
- package/lib/servers/model/server/cache.js +3 -3
- package/lib/servers/model/server/cache.js.map +1 -1
- package/lib/servers/model/server/jobs.js +3 -3
- package/lib/servers/model/server/jobs.js.map +1 -1
- package/lib/servers/model/server/query.js +10 -10
- package/lib/servers/model/server/query.js.map +1 -1
- package/lib/servers/model/server/structure-wrapper.js +6 -6
- package/lib/servers/model/server/structure-wrapper.js.map +1 -1
- package/lib/servers/model/server.js +3 -3
- package/lib/servers/model/server.js.map +1 -1
- package/lib/servers/model/utils/fetch-props-pdbe.js +4 -4
- package/lib/servers/model/utils/fetch-props-pdbe.js.map +1 -1
- package/lib/servers/model/utils/writer.js +2 -2
- package/lib/servers/model/utils/writer.js.map +1 -1
- package/lib/servers/plugin-state/api-schema.js +2 -2
- package/lib/servers/plugin-state/api-schema.js.map +1 -1
- package/lib/servers/plugin-state/index.js +1 -1
- package/lib/servers/plugin-state/index.js.map +1 -1
- package/lib/servers/volume/pack/format/dsn6.js +1 -1
- package/lib/servers/volume/pack/format/dsn6.js.map +1 -1
- package/lib/servers/volume/pack/main.js +4 -4
- package/lib/servers/volume/pack/main.js.map +1 -1
- package/lib/servers/volume/pack/writer.js +1 -1
- package/lib/servers/volume/pack/writer.js.map +1 -1
- package/lib/servers/volume/pack.js +1 -1
- package/lib/servers/volume/pack.js.map +1 -1
- package/lib/servers/volume/server/api.js +7 -7
- package/lib/servers/volume/server/api.js.map +1 -1
- package/lib/servers/volume/server/local-api.js +1 -1
- package/lib/servers/volume/server/local-api.js.map +1 -1
- package/lib/servers/volume/server/query/encode.js +3 -3
- package/lib/servers/volume/server/query/encode.js.map +1 -1
- package/lib/servers/volume/server/query/execute.js +5 -5
- package/lib/servers/volume/server/query/execute.js.map +1 -1
- package/lib/servers/volume/server/version.js +1 -1
- package/lib/servers/volume/server/version.js.map +1 -1
- package/lib/servers/volume/server/web-api.js +7 -7
- package/lib/servers/volume/server/web-api.js.map +1 -1
- package/lib/servers/volume/server/web-schema.js +6 -6
- package/lib/servers/volume/server/web-schema.js.map +1 -1
- package/lib/servers/volume/server.js +2 -2
- package/lib/servers/volume/server.js.map +1 -1
- package/lib/tests/browser/font-atlas.js +1 -1
- package/lib/tests/browser/font-atlas.js.map +1 -1
- package/lib/tests/browser/render-shape.js +1 -1
- package/lib/tests/browser/render-shape.js.map +1 -1
- package/lib/tests/browser/render-structure.js +1 -1
- package/lib/tests/browser/render-structure.js.map +1 -1
- package/lib/tsconfig.commonjs.tsbuildinfo +1 -1
- package/package.json +6 -7
- package/CHANGELOG.md +0 -191
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export declare const EllipsoidParams: {
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visuals: PD.MultiSelect<"intra-bond" | "inter-bond" | "ellipsoid-mesh">;
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includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
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excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
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radiusOffset: PD.Numeric;
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smoothness: PD.Numeric;
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unitKinds: PD.MultiSelect<"spheres" | "
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+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
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alpha: PD.Numeric;
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quality: PD.Select<"
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+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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tryUseGpu: PD.BooleanParam;
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smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
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+
smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
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resolutionFactor: number;
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sampleStride: number;
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-
}>, "on"
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+
}>, "on">>;
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doubleSided: PD.BooleanParam;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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@@ -16,7 +16,7 @@ export declare const GaussianVolumeParams: {
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resolution: PD.Numeric;
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radiusOffset: PD.Numeric;
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smoothness: PD.Numeric;
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-
unitKinds: PD.MultiSelect<"spheres" | "
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+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
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doubleSided: PD.BooleanParam;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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@@ -41,7 +41,7 @@ export declare const GaussianVolumeParams: {
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stepsPerCell: PD.Numeric;
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jumpLength: PD.Numeric;
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alpha: PD.Numeric;
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-
quality: PD.Select<"
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+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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};
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export declare type GaussianVolumeParams = typeof GaussianVolumeParams;
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export declare function getGaussianVolumeParams(ctx: ThemeRegistryContext, structure: Structure): {
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@@ -52,7 +52,7 @@ export declare function getGaussianVolumeParams(ctx: ThemeRegistryContext, struc
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resolution: PD.Numeric;
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radiusOffset: PD.Numeric;
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smoothness: PD.Numeric;
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-
unitKinds: PD.MultiSelect<"spheres" | "
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+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
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doubleSided: PD.BooleanParam;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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@@ -77,7 +77,7 @@ export declare function getGaussianVolumeParams(ctx: ThemeRegistryContext, struc
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stepsPerCell: PD.Numeric;
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jumpLength: PD.Numeric;
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alpha: PD.Numeric;
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quality: PD.Select<"
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+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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};
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export declare type GaussianVolumeRepresentation = StructureRepresentation<GaussianVolumeParams>;
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export declare function GaussianVolumeRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, GaussianVolumeParams>): GaussianVolumeRepresentation;
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|
@@ -89,7 +89,7 @@ export declare const GaussianVolumeRepresentationProvider: StructureRepresentati
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resolution: PD.Numeric;
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radiusOffset: PD.Numeric;
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smoothness: PD.Numeric;
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-
unitKinds: PD.MultiSelect<"spheres" | "
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+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
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doubleSided: PD.BooleanParam;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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|
@@ -114,5 +114,5 @@ export declare const GaussianVolumeRepresentationProvider: StructureRepresentati
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stepsPerCell: PD.Numeric;
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jumpLength: PD.Numeric;
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alpha: PD.Numeric;
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117
|
-
quality: PD.Select<"
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|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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118
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}, "gaussian-volume">;
|
|
@@ -14,11 +14,11 @@ export declare const LabelParams: {
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14
14
|
backgroundMargin: PD.Numeric;
|
|
15
15
|
backgroundColor: PD.Color;
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|
16
16
|
backgroundOpacity: PD.Numeric;
|
|
17
|
-
level: PD.Select<"
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|
17
|
+
level: PD.Select<"element" | "residue" | "chain">;
|
|
18
18
|
chainScale: PD.Numeric;
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|
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19
|
residueScale: PD.Numeric;
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|
20
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|
elementScale: PD.Numeric;
|
|
21
|
-
unitKinds: PD.MultiSelect<"spheres" | "
|
|
21
|
+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
22
22
|
includeParent: PD.BooleanParam;
|
|
23
23
|
sizeFactor: PD.Numeric;
|
|
24
24
|
borderWidth: PD.Numeric;
|
|
@@ -36,7 +36,7 @@ export declare const LabelParams: {
|
|
|
36
36
|
fontVariant: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontVariant>;
|
|
37
37
|
fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
|
|
38
38
|
alpha: PD.Numeric;
|
|
39
|
-
quality: PD.Select<"
|
|
39
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
40
40
|
};
|
|
41
41
|
export declare type LabelParams = typeof LabelParams;
|
|
42
42
|
export declare function getLabelParams(ctx: ThemeRegistryContext, structure: Structure): {
|
|
@@ -45,11 +45,11 @@ export declare function getLabelParams(ctx: ThemeRegistryContext, structure: Str
|
|
|
45
45
|
backgroundMargin: PD.Numeric;
|
|
46
46
|
backgroundColor: PD.Color;
|
|
47
47
|
backgroundOpacity: PD.Numeric;
|
|
48
|
-
level: PD.Select<"
|
|
48
|
+
level: PD.Select<"element" | "residue" | "chain">;
|
|
49
49
|
chainScale: PD.Numeric;
|
|
50
50
|
residueScale: PD.Numeric;
|
|
51
51
|
elementScale: PD.Numeric;
|
|
52
|
-
unitKinds: PD.MultiSelect<"spheres" | "
|
|
52
|
+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
53
53
|
includeParent: PD.BooleanParam;
|
|
54
54
|
sizeFactor: PD.Numeric;
|
|
55
55
|
borderWidth: PD.Numeric;
|
|
@@ -67,7 +67,7 @@ export declare function getLabelParams(ctx: ThemeRegistryContext, structure: Str
|
|
|
67
67
|
fontVariant: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontVariant>;
|
|
68
68
|
fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
|
|
69
69
|
alpha: PD.Numeric;
|
|
70
|
-
quality: PD.Select<"
|
|
70
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
71
71
|
};
|
|
72
72
|
export declare type LabelRepresentation = StructureRepresentation<LabelParams>;
|
|
73
73
|
export declare function LabelRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, LabelParams>): LabelRepresentation;
|
|
@@ -77,11 +77,11 @@ export declare const LabelRepresentationProvider: StructureRepresentationProvide
|
|
|
77
77
|
backgroundMargin: PD.Numeric;
|
|
78
78
|
backgroundColor: PD.Color;
|
|
79
79
|
backgroundOpacity: PD.Numeric;
|
|
80
|
-
level: PD.Select<"
|
|
80
|
+
level: PD.Select<"element" | "residue" | "chain">;
|
|
81
81
|
chainScale: PD.Numeric;
|
|
82
82
|
residueScale: PD.Numeric;
|
|
83
83
|
elementScale: PD.Numeric;
|
|
84
|
-
unitKinds: PD.MultiSelect<"spheres" | "
|
|
84
|
+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
85
85
|
includeParent: PD.BooleanParam;
|
|
86
86
|
sizeFactor: PD.Numeric;
|
|
87
87
|
borderWidth: PD.Numeric;
|
|
@@ -99,5 +99,5 @@ export declare const LabelRepresentationProvider: StructureRepresentationProvide
|
|
|
99
99
|
fontVariant: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontVariant>;
|
|
100
100
|
fontWeight: PD.Select<import("../../../mol-geo/geometry/text/font-atlas").FontWeight>;
|
|
101
101
|
alpha: PD.Numeric;
|
|
102
|
-
quality: PD.Select<"
|
|
102
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
103
103
|
}, "label">;
|
|
@@ -9,10 +9,10 @@ import { RepresentationParamsGetter, RepresentationContext } from '../../../mol-
|
|
|
9
9
|
import { ThemeRegistryContext } from '../../../mol-theme/theme';
|
|
10
10
|
import { Structure } from '../../../mol-model/structure';
|
|
11
11
|
export declare const LineParams: {
|
|
12
|
-
multipleBonds: PD.Select<"
|
|
12
|
+
multipleBonds: PD.Select<"offset" | "off" | "symmetric">;
|
|
13
13
|
includeParent: PD.BooleanParam;
|
|
14
14
|
sizeFactor: PD.Numeric;
|
|
15
|
-
unitKinds: PD.MultiSelect<"spheres" | "
|
|
15
|
+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
16
16
|
visuals: PD.MultiSelect<"intra-bond" | "inter-bond" | "element-point" | "element-cross">;
|
|
17
17
|
lineSizeAttenuation: PD.BooleanParam;
|
|
18
18
|
ignoreHydrogens: PD.BooleanParam;
|
|
@@ -20,11 +20,11 @@ export declare const LineParams: {
|
|
|
20
20
|
crosses: PD.Select<"all" | "lone">;
|
|
21
21
|
crossSize: PD.Numeric;
|
|
22
22
|
alpha: PD.Numeric;
|
|
23
|
-
quality: PD.Select<"
|
|
23
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
24
24
|
pointSizeAttenuation: PD.BooleanParam;
|
|
25
|
-
pointStyle: PD.Select<"
|
|
26
|
-
includeTypes: PD.MultiSelect<"covalent" | "
|
|
27
|
-
excludeTypes: PD.MultiSelect<"covalent" | "
|
|
25
|
+
pointStyle: PD.Select<"circle" | "square" | "fuzzy">;
|
|
26
|
+
includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
|
|
27
|
+
excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
|
|
28
28
|
aromaticBonds: PD.BooleanParam;
|
|
29
29
|
linkScale: PD.Numeric;
|
|
30
30
|
linkSpacing: PD.Numeric;
|
|
@@ -33,10 +33,10 @@ export declare const LineParams: {
|
|
|
33
33
|
};
|
|
34
34
|
export declare type LineParams = typeof LineParams;
|
|
35
35
|
export declare function getLineParams(ctx: ThemeRegistryContext, structure: Structure): {
|
|
36
|
-
multipleBonds: PD.Select<"
|
|
36
|
+
multipleBonds: PD.Select<"offset" | "off" | "symmetric">;
|
|
37
37
|
includeParent: PD.BooleanParam;
|
|
38
38
|
sizeFactor: PD.Numeric;
|
|
39
|
-
unitKinds: PD.MultiSelect<"spheres" | "
|
|
39
|
+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
40
40
|
visuals: PD.MultiSelect<"intra-bond" | "inter-bond" | "element-point" | "element-cross">;
|
|
41
41
|
lineSizeAttenuation: PD.BooleanParam;
|
|
42
42
|
ignoreHydrogens: PD.BooleanParam;
|
|
@@ -44,11 +44,11 @@ export declare function getLineParams(ctx: ThemeRegistryContext, structure: Stru
|
|
|
44
44
|
crosses: PD.Select<"all" | "lone">;
|
|
45
45
|
crossSize: PD.Numeric;
|
|
46
46
|
alpha: PD.Numeric;
|
|
47
|
-
quality: PD.Select<"
|
|
47
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
48
48
|
pointSizeAttenuation: PD.BooleanParam;
|
|
49
|
-
pointStyle: PD.Select<"
|
|
50
|
-
includeTypes: PD.MultiSelect<"covalent" | "
|
|
51
|
-
excludeTypes: PD.MultiSelect<"covalent" | "
|
|
49
|
+
pointStyle: PD.Select<"circle" | "square" | "fuzzy">;
|
|
50
|
+
includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
|
|
51
|
+
excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
|
|
52
52
|
aromaticBonds: PD.BooleanParam;
|
|
53
53
|
linkScale: PD.Numeric;
|
|
54
54
|
linkSpacing: PD.Numeric;
|
|
@@ -58,10 +58,10 @@ export declare function getLineParams(ctx: ThemeRegistryContext, structure: Stru
|
|
|
58
58
|
export declare type LineRepresentation = StructureRepresentation<LineParams>;
|
|
59
59
|
export declare function LineRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, LineParams>): LineRepresentation;
|
|
60
60
|
export declare const LineRepresentationProvider: StructureRepresentationProvider<{
|
|
61
|
-
multipleBonds: PD.Select<"
|
|
61
|
+
multipleBonds: PD.Select<"offset" | "off" | "symmetric">;
|
|
62
62
|
includeParent: PD.BooleanParam;
|
|
63
63
|
sizeFactor: PD.Numeric;
|
|
64
|
-
unitKinds: PD.MultiSelect<"spheres" | "
|
|
64
|
+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
65
65
|
visuals: PD.MultiSelect<"intra-bond" | "inter-bond" | "element-point" | "element-cross">;
|
|
66
66
|
lineSizeAttenuation: PD.BooleanParam;
|
|
67
67
|
ignoreHydrogens: PD.BooleanParam;
|
|
@@ -69,11 +69,11 @@ export declare const LineRepresentationProvider: StructureRepresentationProvider
|
|
|
69
69
|
crosses: PD.Select<"all" | "lone">;
|
|
70
70
|
crossSize: PD.Numeric;
|
|
71
71
|
alpha: PD.Numeric;
|
|
72
|
-
quality: PD.Select<"
|
|
72
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
73
73
|
pointSizeAttenuation: PD.BooleanParam;
|
|
74
|
-
pointStyle: PD.Select<"
|
|
75
|
-
includeTypes: PD.MultiSelect<"covalent" | "
|
|
76
|
-
excludeTypes: PD.MultiSelect<"covalent" | "
|
|
74
|
+
pointStyle: PD.Select<"circle" | "square" | "fuzzy">;
|
|
75
|
+
includeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
|
|
76
|
+
excludeTypes: PD.MultiSelect<"covalent" | "metal-coordination" | "hydrogen-bond" | "disulfide" | "aromatic" | "computed">;
|
|
77
77
|
aromaticBonds: PD.BooleanParam;
|
|
78
78
|
linkScale: PD.Numeric;
|
|
79
79
|
linkSpacing: PD.Numeric;
|
|
@@ -17,14 +17,14 @@ export declare const MolecularSurfaceParams: {
|
|
|
17
17
|
probeRadius: PD.Numeric;
|
|
18
18
|
resolution: PD.Numeric;
|
|
19
19
|
probePositions: PD.Numeric;
|
|
20
|
-
unitKinds: PD.MultiSelect<"spheres" | "
|
|
20
|
+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
21
21
|
lineSizeAttenuation: PD.BooleanParam;
|
|
22
22
|
alpha: PD.Numeric;
|
|
23
|
-
quality: PD.Select<"
|
|
24
|
-
smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
|
|
23
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
24
|
+
smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
|
|
25
25
|
resolutionFactor: number;
|
|
26
26
|
sampleStride: number;
|
|
27
|
-
}>, "on"
|
|
27
|
+
}>, "on">>;
|
|
28
28
|
doubleSided: PD.BooleanParam;
|
|
29
29
|
flipSided: PD.BooleanParam;
|
|
30
30
|
flatShaded: PD.BooleanParam;
|
|
@@ -41,14 +41,14 @@ export declare function getMolecularSurfaceParams(ctx: ThemeRegistryContext, str
|
|
|
41
41
|
probeRadius: PD.Numeric;
|
|
42
42
|
resolution: PD.Numeric;
|
|
43
43
|
probePositions: PD.Numeric;
|
|
44
|
-
unitKinds: PD.MultiSelect<"spheres" | "
|
|
44
|
+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
45
45
|
lineSizeAttenuation: PD.BooleanParam;
|
|
46
46
|
alpha: PD.Numeric;
|
|
47
|
-
quality: PD.Select<"
|
|
48
|
-
smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
|
|
47
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
48
|
+
smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
|
|
49
49
|
resolutionFactor: number;
|
|
50
50
|
sampleStride: number;
|
|
51
|
-
}>, "on"
|
|
51
|
+
}>, "on">>;
|
|
52
52
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doubleSided: PD.BooleanParam;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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@@ -66,14 +66,14 @@ export declare const MolecularSurfaceRepresentationProvider: StructureRepresenta
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probeRadius: PD.Numeric;
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resolution: PD.Numeric;
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probePositions: PD.Numeric;
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69
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-
unitKinds: PD.MultiSelect<"spheres" | "
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69
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+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
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lineSizeAttenuation: PD.BooleanParam;
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alpha: PD.Numeric;
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72
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-
quality: PD.Select<"
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73
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-
smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
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72
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+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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73
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+
smoothColors: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<unknown>, "auto"> | PD.NamedParams<PD.Normalize<{
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resolutionFactor: number;
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sampleStride: number;
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76
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-
}>, "on"
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76
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+
}>, "on">>;
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doubleSided: PD.BooleanParam;
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flipSided: PD.BooleanParam;
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flatShaded: PD.BooleanParam;
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@@ -12,7 +12,7 @@ export declare const OrientationParams: {
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12
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visuals: PD.MultiSelect<"orientation-ellipsoid-mesh">;
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13
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sizeFactor: PD.Numeric;
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14
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detail: PD.Numeric;
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15
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-
unitKinds: PD.MultiSelect<"spheres" | "
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15
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+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
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16
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includeParent: PD.BooleanParam;
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17
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doubleSided: PD.BooleanParam;
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flipSided: PD.BooleanParam;
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@@ -20,14 +20,14 @@ export declare const OrientationParams: {
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ignoreLight: PD.BooleanParam;
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xrayShaded: PD.BooleanParam;
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22
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alpha: PD.Numeric;
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23
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-
quality: PD.Select<"
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23
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+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
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24
24
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};
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export declare type OrientationParams = typeof OrientationParams;
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26
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export declare function getOrientationParams(ctx: ThemeRegistryContext, structure: Structure): {
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visuals: PD.MultiSelect<"orientation-ellipsoid-mesh">;
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sizeFactor: PD.Numeric;
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detail: PD.Numeric;
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30
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-
unitKinds: PD.MultiSelect<"spheres" | "
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30
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+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
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31
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includeParent: PD.BooleanParam;
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32
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doubleSided: PD.BooleanParam;
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33
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flipSided: PD.BooleanParam;
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@@ -35,7 +35,7 @@ export declare function getOrientationParams(ctx: ThemeRegistryContext, structur
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35
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ignoreLight: PD.BooleanParam;
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36
36
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xrayShaded: PD.BooleanParam;
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37
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alpha: PD.Numeric;
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|
38
|
-
quality: PD.Select<"
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38
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
39
39
|
};
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40
40
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export declare type OrientationRepresentation = StructureRepresentation<OrientationParams>;
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41
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export declare function OrientationRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, OrientationParams>): OrientationRepresentation;
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@@ -43,7 +43,7 @@ export declare const OrientationRepresentationProvider: StructureRepresentationP
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43
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visuals: PD.MultiSelect<"orientation-ellipsoid-mesh">;
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44
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sizeFactor: PD.Numeric;
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45
45
|
detail: PD.Numeric;
|
|
46
|
-
unitKinds: PD.MultiSelect<"spheres" | "
|
|
46
|
+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
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47
47
|
includeParent: PD.BooleanParam;
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48
48
|
doubleSided: PD.BooleanParam;
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49
49
|
flipSided: PD.BooleanParam;
|
|
@@ -51,5 +51,5 @@ export declare const OrientationRepresentationProvider: StructureRepresentationP
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51
51
|
ignoreLight: PD.BooleanParam;
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52
52
|
xrayShaded: PD.BooleanParam;
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53
53
|
alpha: PD.Numeric;
|
|
54
|
-
quality: PD.Select<"
|
|
54
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
55
55
|
}, "orientation">;
|
|
@@ -12,24 +12,24 @@ export declare const PointParams: {
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|
|
12
12
|
pointSizeAttenuation: PD.BooleanParam;
|
|
13
13
|
ignoreHydrogens: PD.BooleanParam;
|
|
14
14
|
traceOnly: PD.BooleanParam;
|
|
15
|
-
unitKinds: PD.MultiSelect<"spheres" | "
|
|
15
|
+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
16
16
|
includeParent: PD.BooleanParam;
|
|
17
17
|
sizeFactor: PD.Numeric;
|
|
18
|
-
pointStyle: PD.Select<"
|
|
18
|
+
pointStyle: PD.Select<"circle" | "square" | "fuzzy">;
|
|
19
19
|
alpha: PD.Numeric;
|
|
20
|
-
quality: PD.Select<"
|
|
20
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
21
21
|
};
|
|
22
22
|
export declare type PointParams = typeof PointParams;
|
|
23
23
|
export declare function getPointParams(ctx: ThemeRegistryContext, structure: Structure): {
|
|
24
24
|
pointSizeAttenuation: PD.BooleanParam;
|
|
25
25
|
ignoreHydrogens: PD.BooleanParam;
|
|
26
26
|
traceOnly: PD.BooleanParam;
|
|
27
|
-
unitKinds: PD.MultiSelect<"spheres" | "
|
|
27
|
+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
28
28
|
includeParent: PD.BooleanParam;
|
|
29
29
|
sizeFactor: PD.Numeric;
|
|
30
|
-
pointStyle: PD.Select<"
|
|
30
|
+
pointStyle: PD.Select<"circle" | "square" | "fuzzy">;
|
|
31
31
|
alpha: PD.Numeric;
|
|
32
|
-
quality: PD.Select<"
|
|
32
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
33
33
|
};
|
|
34
34
|
export declare type PointRepresentation = StructureRepresentation<PointParams>;
|
|
35
35
|
export declare function PointRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, PointParams>): PointRepresentation;
|
|
@@ -37,10 +37,10 @@ export declare const PointRepresentationProvider: StructureRepresentationProvide
|
|
|
37
37
|
pointSizeAttenuation: PD.BooleanParam;
|
|
38
38
|
ignoreHydrogens: PD.BooleanParam;
|
|
39
39
|
traceOnly: PD.BooleanParam;
|
|
40
|
-
unitKinds: PD.MultiSelect<"spheres" | "
|
|
40
|
+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
41
41
|
includeParent: PD.BooleanParam;
|
|
42
42
|
sizeFactor: PD.Numeric;
|
|
43
|
-
pointStyle: PD.Select<"
|
|
43
|
+
pointStyle: PD.Select<"circle" | "square" | "fuzzy">;
|
|
44
44
|
alpha: PD.Numeric;
|
|
45
|
-
quality: PD.Select<"
|
|
45
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
46
46
|
}, "point">;
|
|
@@ -12,7 +12,7 @@ export declare const PuttyParams: {
|
|
|
12
12
|
sizeFactor: PD.Numeric;
|
|
13
13
|
visuals: PD.MultiSelect<"polymer-gap" | "polymer-tube">;
|
|
14
14
|
radialSegments: PD.Numeric;
|
|
15
|
-
unitKinds: PD.MultiSelect<"spheres" | "
|
|
15
|
+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
16
16
|
includeParent: PD.BooleanParam;
|
|
17
17
|
doubleSided: PD.BooleanParam;
|
|
18
18
|
flipSided: PD.BooleanParam;
|
|
@@ -20,7 +20,7 @@ export declare const PuttyParams: {
|
|
|
20
20
|
ignoreLight: PD.BooleanParam;
|
|
21
21
|
xrayShaded: PD.BooleanParam;
|
|
22
22
|
alpha: PD.Numeric;
|
|
23
|
-
quality: PD.Select<"
|
|
23
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
24
24
|
detail: PD.Numeric;
|
|
25
25
|
linearSegments: PD.Numeric;
|
|
26
26
|
};
|
|
@@ -29,7 +29,7 @@ export declare function getPuttyParams(ctx: ThemeRegistryContext, structure: Str
|
|
|
29
29
|
sizeFactor: PD.Numeric;
|
|
30
30
|
visuals: PD.MultiSelect<"polymer-gap" | "polymer-tube">;
|
|
31
31
|
radialSegments: PD.Numeric;
|
|
32
|
-
unitKinds: PD.MultiSelect<"spheres" | "
|
|
32
|
+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
33
33
|
includeParent: PD.BooleanParam;
|
|
34
34
|
doubleSided: PD.BooleanParam;
|
|
35
35
|
flipSided: PD.BooleanParam;
|
|
@@ -37,7 +37,7 @@ export declare function getPuttyParams(ctx: ThemeRegistryContext, structure: Str
|
|
|
37
37
|
ignoreLight: PD.BooleanParam;
|
|
38
38
|
xrayShaded: PD.BooleanParam;
|
|
39
39
|
alpha: PD.Numeric;
|
|
40
|
-
quality: PD.Select<"
|
|
40
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
41
41
|
detail: PD.Numeric;
|
|
42
42
|
linearSegments: PD.Numeric;
|
|
43
43
|
};
|
|
@@ -47,7 +47,7 @@ export declare const PuttyRepresentationProvider: StructureRepresentationProvide
|
|
|
47
47
|
sizeFactor: PD.Numeric;
|
|
48
48
|
visuals: PD.MultiSelect<"polymer-gap" | "polymer-tube">;
|
|
49
49
|
radialSegments: PD.Numeric;
|
|
50
|
-
unitKinds: PD.MultiSelect<"spheres" | "
|
|
50
|
+
unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
|
|
51
51
|
includeParent: PD.BooleanParam;
|
|
52
52
|
doubleSided: PD.BooleanParam;
|
|
53
53
|
flipSided: PD.BooleanParam;
|
|
@@ -55,7 +55,7 @@ export declare const PuttyRepresentationProvider: StructureRepresentationProvide
|
|
|
55
55
|
ignoreLight: PD.BooleanParam;
|
|
56
56
|
xrayShaded: PD.BooleanParam;
|
|
57
57
|
alpha: PD.Numeric;
|
|
58
|
-
quality: PD.Select<"
|
|
58
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
59
59
|
detail: PD.Numeric;
|
|
60
60
|
linearSegments: PD.Numeric;
|
|
61
61
|
}, "putty">;
|