molstar 2.3.7 → 2.3.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/viewer/molstar.css +1 -2
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.js +1 -1
- package/lib/apps/docking-viewer/index.js.map +1 -1
- package/lib/apps/viewer/index.d.ts +1 -1
- package/lib/apps/viewer/index.js +3 -3
- package/lib/apps/viewer/index.js.map +1 -1
- package/lib/cli/chem-comp-dict/create-ions.js +1 -1
- package/lib/cli/chem-comp-dict/create-ions.js.map +1 -1
- package/lib/cli/chem-comp-dict/create-table.js +3 -3
- package/lib/cli/chem-comp-dict/create-table.js.map +1 -1
- package/lib/cli/chem-comp-dict/util.js +2 -2
- package/lib/cli/chem-comp-dict/util.js.map +1 -1
- package/lib/cli/cif2bcif/converter.js +2 -2
- package/lib/cli/cif2bcif/converter.js.map +1 -1
- package/lib/cli/cifschema/index.js +12 -12
- package/lib/cli/cifschema/index.js.map +1 -1
- package/lib/cli/cifschema/util/cif-dic.js +19 -19
- package/lib/cli/cifschema/util/cif-dic.js.map +1 -1
- package/lib/cli/cifschema/util/generate.js +21 -21
- package/lib/cli/cifschema/util/generate.js.map +1 -1
- package/lib/cli/cifschema/util/schema.js +1 -1
- package/lib/cli/cifschema/util/schema.js.map +1 -1
- package/lib/cli/lipid-params/index.js +3 -3
- package/lib/cli/lipid-params/index.js.map +1 -1
- package/lib/cli/state-docs/index.js +4 -4
- package/lib/cli/state-docs/index.js.map +1 -1
- package/lib/cli/state-docs/pd-to-md.js +10 -10
- package/lib/cli/state-docs/pd-to-md.js.map +1 -1
- package/lib/cli/structure-info/model.js +18 -18
- package/lib/cli/structure-info/model.js.map +1 -1
- package/lib/cli/structure-info/volume.js +1 -1
- package/lib/cli/structure-info/volume.js.map +1 -1
- package/lib/commonjs/apps/docking-viewer/index.js +1 -1
- package/lib/commonjs/apps/docking-viewer/index.js.map +1 -1
- package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -2
- package/lib/commonjs/apps/viewer/index.d.ts +7 -7
- package/lib/commonjs/apps/viewer/index.js +3 -3
- package/lib/commonjs/apps/viewer/index.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-table.js +3 -3
- package/lib/commonjs/cli/chem-comp-dict/create-table.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
- package/lib/commonjs/cli/chem-comp-dict/util.js +2 -2
- package/lib/commonjs/cli/chem-comp-dict/util.js.map +1 -1
- package/lib/commonjs/cli/cif2bcif/converter.js +2 -2
- package/lib/commonjs/cli/cif2bcif/converter.js.map +1 -1
- package/lib/commonjs/cli/cifschema/index.js +12 -12
- package/lib/commonjs/cli/cifschema/index.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +19 -19
- package/lib/commonjs/cli/cifschema/util/cif-dic.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/generate.js +21 -21
- package/lib/commonjs/cli/cifschema/util/generate.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
- package/lib/commonjs/cli/cifschema/util/schema.js.map +1 -1
- package/lib/commonjs/cli/lipid-params/index.js +3 -3
- package/lib/commonjs/cli/lipid-params/index.js.map +1 -1
- package/lib/commonjs/cli/state-docs/index.js +4 -4
- package/lib/commonjs/cli/state-docs/index.js.map +1 -1
- package/lib/commonjs/cli/state-docs/pd-to-md.js +10 -10
- package/lib/commonjs/cli/state-docs/pd-to-md.js.map +1 -1
- package/lib/commonjs/cli/structure-info/model.js +18 -18
- package/lib/commonjs/cli/structure-info/model.js.map +1 -1
- package/lib/commonjs/cli/structure-info/volume.js +1 -1
- package/lib/commonjs/cli/structure-info/volume.js.map +1 -1
- package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
- package/lib/commonjs/examples/basic-wrapper/superposition.js.map +1 -1
- package/lib/commonjs/examples/domain-annotation-server/mapping.js +2 -2
- package/lib/commonjs/examples/domain-annotation-server/mapping.js.map +1 -1
- package/lib/commonjs/examples/domain-annotation-server/server.js +3 -3
- package/lib/commonjs/examples/domain-annotation-server/server.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +3 -3
- package/lib/commonjs/examples/proteopedia-wrapper/annotation.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +2 -2
- package/lib/commonjs/examples/proteopedia-wrapper/index.js.map +1 -1
- package/lib/commonjs/examples/task.js +6 -6
- package/lib/commonjs/examples/task.js.map +1 -1
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js +2 -2
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js.map +1 -1
- package/lib/commonjs/extensions/anvil/behavior.d.ts +2 -2
- package/lib/commonjs/extensions/anvil/representation.d.ts +5 -5
- package/lib/commonjs/extensions/anvil/representation.js +1 -1
- package/lib/commonjs/extensions/anvil/representation.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/model.js +15 -15
- package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/representation.d.ts +2 -2
- package/lib/commonjs/extensions/cellpack/state.js +5 -5
- package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/util.js +4 -4
- package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +6 -6
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +7 -7
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js.map +1 -1
- package/lib/commonjs/extensions/g3d/data.js +2 -2
- package/lib/commonjs/extensions/g3d/data.js.map +1 -1
- package/lib/commonjs/extensions/g3d/model.js +2 -2
- package/lib/commonjs/extensions/g3d/model.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/controls.js +2 -2
- package/lib/commonjs/extensions/geo-export/controls.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/glb-exporter.js +1 -1
- package/lib/commonjs/extensions/geo-export/glb-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/obj-exporter.js +3 -3
- package/lib/commonjs/extensions/geo-export/obj-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/stl-exporter.js +1 -1
- package/lib/commonjs/extensions/geo-export/stl-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +5 -5
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js.map +1 -1
- package/lib/commonjs/extensions/mp4-export/controls.js +1 -1
- package/lib/commonjs/extensions/mp4-export/controls.js.map +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js.map +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -6
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +3 -3
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +2 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +7 -7
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -3
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +11 -11
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +10 -10
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +8 -8
- package/lib/commonjs/mol-canvas3d/canvas3d.js +3 -3
- package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/controls/trackball.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +3 -3
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +1 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/passes/wboit.js +1 -1
- package/lib/commonjs/mol-canvas3d/passes/wboit.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/util.js +1 -1
- package/lib/commonjs/mol-canvas3d/util.js.map +1 -1
- package/lib/commonjs/mol-data/db/table.js +1 -1
- package/lib/commonjs/mol-data/db/table.js.map +1 -1
- package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js +1 -1
- package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js.map +1 -1
- package/lib/commonjs/mol-data/int/impl/ordered-set.d.ts +3 -3
- package/lib/commonjs/mol-data/int/impl/sorted-array.d.ts +1 -1
- package/lib/commonjs/mol-data/int/impl/sorted-array.js +2 -2
- package/lib/commonjs/mol-data/int/impl/sorted-array.js.map +1 -1
- package/lib/commonjs/mol-data/int/tuple.js +1 -1
- package/lib/commonjs/mol-data/int/tuple.js.map +1 -1
- package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js +1 -1
- package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/base.d.ts +3 -3
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +3 -3
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +3 -3
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
- package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
- package/lib/commonjs/mol-geo/primitive/polyhedron.js.map +1 -1
- package/lib/commonjs/mol-gl/_spec/gl.shim.js +4 -4
- package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
- package/lib/commonjs/mol-gl/compute/grid3d.js +3 -3
- package/lib/commonjs/mol-gl/compute/grid3d.js.map +1 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +4 -4
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js.map +1 -1
- package/lib/commonjs/mol-gl/renderable/util.js +1 -1
- package/lib/commonjs/mol-gl/renderable/util.js.map +1 -1
- package/lib/commonjs/mol-gl/renderer.d.ts +2 -2
- package/lib/commonjs/mol-gl/scene.js +1 -1
- package/lib/commonjs/mol-gl/scene.js.map +1 -1
- package/lib/commonjs/mol-gl/shader-code.js +8 -8
- package/lib/commonjs/mol-gl/shader-code.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/buffer.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/buffer.js +5 -5
- package/lib/commonjs/mol-gl/webgl/buffer.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/compat.js +3 -3
- package/lib/commonjs/mol-gl/webgl/compat.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/context.js +2 -2
- package/lib/commonjs/mol-gl/webgl/context.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/framebuffer.js +1 -1
- package/lib/commonjs/mol-gl/webgl/framebuffer.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/program.js +14 -12
- package/lib/commonjs/mol-gl/webgl/program.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/render-item.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/render-item.js +6 -3
- package/lib/commonjs/mol-gl/webgl/render-item.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/resources.js +1 -1
- package/lib/commonjs/mol-gl/webgl/resources.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/shader.js +3 -3
- package/lib/commonjs/mol-gl/webgl/shader.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/state.d.ts +4 -1
- package/lib/commonjs/mol-gl/webgl/state.js +25 -1
- package/lib/commonjs/mol-gl/webgl/state.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/texture.js +2 -2
- package/lib/commonjs/mol-gl/webgl/texture.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/uniform.js +2 -2
- package/lib/commonjs/mol-gl/webgl/uniform.js.map +1 -1
- package/lib/commonjs/mol-io/common/file-handle.js +1 -1
- package/lib/commonjs/mol-io/common/file-handle.js.map +1 -1
- package/lib/commonjs/mol-io/common/typed-array.js +1 -1
- package/lib/commonjs/mol-io/common/typed-array.js.map +1 -1
- package/lib/commonjs/mol-io/reader/ccp4/parser.js +1 -1
- package/lib/commonjs/mol-io/reader/ccp4/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/binary/parser.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/binary/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/data-model.js +7 -7
- package/lib/commonjs/mol-io/reader/cif/data-model.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +14 -14
- package/lib/commonjs/mol-io/reader/cif/schema.js +7 -7
- package/lib/commonjs/mol-io/reader/cif/schema.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/text/parser.js +2 -2
- package/lib/commonjs/mol-io/reader/cif/text/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
- package/lib/commonjs/mol-io/reader/dcd/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.js +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.js.map +1 -1
- package/lib/commonjs/mol-io/reader/result.js +1 -1
- package/lib/commonjs/mol-io/reader/result.js.map +1 -1
- package/lib/commonjs/mol-io/writer/cif/encoder/text.js +3 -3
- package/lib/commonjs/mol-io/writer/cif/encoder/text.js.map +1 -1
- package/lib/commonjs/mol-io/writer/cif/encoder.js +5 -5
- package/lib/commonjs/mol-io/writer/cif/encoder.js.map +1 -1
- package/lib/commonjs/mol-io/writer/mol/encoder.js +4 -4
- package/lib/commonjs/mol-io/writer/mol/encoder.js.map +1 -1
- package/lib/commonjs/mol-io/writer/mol2/encoder.js +6 -6
- package/lib/commonjs/mol-io/writer/mol2/encoder.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +1 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/construction.js +8 -8
- package/lib/commonjs/mol-math/geometry/spacegroup/construction.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/tables.js +1 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/tables.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/symmetry-operator.js +4 -4
- package/lib/commonjs/mol-math/geometry/symmetry-operator.js.map +1 -1
- package/lib/commonjs/mol-math/graph/inter-unit-graph.js +2 -2
- package/lib/commonjs/mol-math/graph/inter-unit-graph.js.map +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.js.map +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec2.js +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec2.js.map +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec4.js +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec4.js.map +1 -1
- package/lib/commonjs/mol-model/loci.d.ts +20 -20
- package/lib/commonjs/mol-model/sequence/sequence.js +2 -2
- package/lib/commonjs/mol-model/sequence/sequence.js.map +1 -1
- package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/export/categories/atom_site.js +2 -2
- package/lib/commonjs/mol-model/structure/export/categories/atom_site.js.map +1 -1
- package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js +1 -1
- package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js.map +1 -1
- package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +1 -1
- package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js.map +1 -1
- package/lib/commonjs/mol-model/structure/export/mmcif.js +1 -1
- package/lib/commonjs/mol-model/structure/export/mmcif.js.map +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/atomic/bonds.js +2 -2
- package/lib/commonjs/mol-model/structure/model/properties/atomic/bonds.js.map +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/symmetry.js +3 -3
- package/lib/commonjs/mol-model/structure/model/properties/symmetry.js.map +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +2 -2
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js.map +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/coarse-keys.js +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/coarse-keys.js.map +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/residue-set.js +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/residue-set.js.map +1 -1
- package/lib/commonjs/mol-model/structure/query/context.js +1 -1
- package/lib/commonjs/mol-model/structure/query/context.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/compute.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/compute.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/element/loci.js +2 -2
- package/lib/commonjs/mol-model/structure/structure/element/loci.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/element/util.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/element/util.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/properties.d.ts +2 -2
- package/lib/commonjs/mol-model/structure/structure/properties.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/properties.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/structure.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/structure.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/symmetry.js +3 -3
- package/lib/commonjs/mol-model/structure/structure/symmetry.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit.d.ts +4 -4
- package/lib/commonjs/mol-model/structure/structure/util/superposition-db-mapping.js +1 -1
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- package/lib/mol-repr/volume/registry.d.ts +2 -2
- package/lib/mol-repr/volume/registry.js +1 -1
- package/lib/mol-repr/volume/registry.js.map +1 -1
- package/lib/mol-repr/volume/slice.d.ts +6 -6
- package/lib/mol-script/language/expression-formatter.js +6 -6
- package/lib/mol-script/language/expression-formatter.js.map +1 -1
- package/lib/mol-script/language/helpers.js +4 -4
- package/lib/mol-script/language/helpers.js.map +1 -1
- package/lib/mol-script/language/parser.js +1 -1
- package/lib/mol-script/language/parser.js.map +1 -1
- package/lib/mol-script/language/symbol-table/structure-query.js +3 -3
- package/lib/mol-script/language/symbol-table/structure-query.js.map +1 -1
- package/lib/mol-script/language/symbol.js +1 -1
- package/lib/mol-script/language/symbol.js.map +1 -1
- package/lib/mol-script/runtime/query/base.js +2 -2
- package/lib/mol-script/runtime/query/base.js.map +1 -1
- package/lib/mol-script/script/mol-script/symbols.js +3 -3
- package/lib/mol-script/script/mol-script/symbols.js.map +1 -1
- package/lib/mol-state/state/builder.js +1 -1
- package/lib/mol-state/state/builder.js.map +1 -1
- package/lib/mol-state/state.js +7 -7
- package/lib/mol-state/state.js.map +1 -1
- package/lib/mol-state/transformer.js +3 -3
- package/lib/mol-state/transformer.js.map +1 -1
- package/lib/mol-state/tree/transient.js +3 -3
- package/lib/mol-state/tree/transient.js.map +1 -1
- package/lib/mol-task/execution/progress.js +4 -4
- package/lib/mol-task/execution/progress.js.map +1 -1
- package/lib/mol-task/task.js +1 -1
- package/lib/mol-task/task.js.map +1 -1
- package/lib/mol-task/util/multistep.js +1 -1
- package/lib/mol-task/util/multistep.js.map +1 -1
- package/lib/mol-task/util/scheduler.d.ts +1 -0
- package/lib/mol-task/util/user-timing.js +3 -3
- package/lib/mol-task/util/user-timing.js.map +1 -1
- package/lib/mol-theme/color/chain-id.js +1 -1
- package/lib/mol-theme/color/chain-id.js.map +1 -1
- package/lib/mol-theme/color/element-symbol.d.ts +4 -4
- package/lib/mol-theme/color/entity-id.js +1 -1
- package/lib/mol-theme/color/entity-id.js.map +1 -1
- package/lib/mol-theme/color/entity-source.js +4 -4
- package/lib/mol-theme/color/entity-source.js.map +1 -1
- package/lib/mol-theme/color/operator-hkl.js +2 -2
- package/lib/mol-theme/color/operator-hkl.js.map +1 -1
- package/lib/mol-theme/color.d.ts +2 -2
- package/lib/mol-theme/label.js +27 -27
- package/lib/mol-theme/label.js.map +1 -1
- package/lib/mol-theme/theme.js +3 -3
- package/lib/mol-theme/theme.js.map +1 -1
- package/lib/mol-util/assets.js +3 -3
- package/lib/mol-util/assets.js.map +1 -1
- package/lib/mol-util/color/color.js +2 -2
- package/lib/mol-util/color/color.js.map +1 -1
- package/lib/mol-util/color/lists.js +1 -1
- package/lib/mol-util/color/lists.js.map +1 -1
- package/lib/mol-util/color/palette.js +2 -2
- package/lib/mol-util/color/palette.js.map +1 -1
- package/lib/mol-util/color/scale.d.ts +1 -1
- package/lib/mol-util/console-logger.js +9 -9
- package/lib/mol-util/console-logger.js.map +1 -1
- package/lib/mol-util/data-source.js +5 -5
- package/lib/mol-util/data-source.js.map +1 -1
- package/lib/mol-util/download.js +1 -1
- package/lib/mol-util/download.js.map +1 -1
- package/lib/mol-util/graphql-client.js +2 -2
- package/lib/mol-util/graphql-client.js.map +1 -1
- package/lib/mol-util/index.js +2 -2
- package/lib/mol-util/index.js.map +1 -1
- package/lib/mol-util/monadic-parser.js +4 -4
- package/lib/mol-util/monadic-parser.js.map +1 -1
- package/lib/mol-util/now.js +4 -4
- package/lib/mol-util/now.js.map +1 -1
- package/lib/mol-util/object.js +1 -1
- package/lib/mol-util/object.js.map +1 -1
- package/lib/mol-util/performance-monitor.js +4 -4
- package/lib/mol-util/performance-monitor.js.map +1 -1
- package/lib/mol-util/string.js +3 -3
- package/lib/mol-util/string.js.map +1 -1
- package/lib/mol-util/url.js +2 -2
- package/lib/mol-util/url.js.map +1 -1
- package/lib/mol-util/zip/deflate.js +1 -1
- package/lib/mol-util/zip/deflate.js.map +1 -1
- package/lib/mol-util/zip/inflate.js +1 -1
- package/lib/mol-util/zip/inflate.js.map +1 -1
- package/lib/mol-util/zip/zip.js +1 -1
- package/lib/mol-util/zip/zip.js.map +1 -1
- package/lib/perf-tests/mol-script.js +1 -1
- package/lib/perf-tests/mol-script.js.map +1 -1
- package/lib/perf-tests/sets.js +1 -1
- package/lib/perf-tests/sets.js.map +1 -1
- package/lib/perf-tests/sort.js +1 -1
- package/lib/perf-tests/sort.js.map +1 -1
- package/lib/perf-tests/string-builder.js +2 -2
- package/lib/perf-tests/string-builder.js.map +1 -1
- package/lib/perf-tests/structure.js +7 -7
- package/lib/perf-tests/structure.js.map +1 -1
- package/lib/perf-tests/test-xtc.js +1 -1
- package/lib/perf-tests/test-xtc.js.map +1 -1
- package/lib/servers/common/file-handle.js +1 -1
- package/lib/servers/common/file-handle.js.map +1 -1
- package/lib/servers/common/util.js +1 -1
- package/lib/servers/common/util.js.map +1 -1
- package/lib/servers/model/config.d.ts +2 -2
- package/lib/servers/model/config.js +4 -4
- package/lib/servers/model/config.js.map +1 -1
- package/lib/servers/model/preprocess/master.js +1 -1
- package/lib/servers/model/preprocess/master.js.map +1 -1
- package/lib/servers/model/preprocess/parallel.js +2 -2
- package/lib/servers/model/preprocess/parallel.js.map +1 -1
- package/lib/servers/model/preprocess/util.js +3 -3
- package/lib/servers/model/preprocess/util.js.map +1 -1
- package/lib/servers/model/properties/providers/pdbe.js +5 -5
- package/lib/servers/model/properties/providers/pdbe.js.map +1 -1
- package/lib/servers/model/property-provider.js +2 -2
- package/lib/servers/model/property-provider.js.map +1 -1
- package/lib/servers/model/query.js +1 -1
- package/lib/servers/model/query.js.map +1 -1
- package/lib/servers/model/server/api-local.js +2 -2
- package/lib/servers/model/server/api-local.js.map +1 -1
- package/lib/servers/model/server/api-schema.js +2 -2
- package/lib/servers/model/server/api-schema.js.map +1 -1
- package/lib/servers/model/server/api-web-multiple.js +1 -1
- package/lib/servers/model/server/api-web-multiple.js.map +1 -1
- package/lib/servers/model/server/api-web.js +4 -4
- package/lib/servers/model/server/api-web.js.map +1 -1
- package/lib/servers/model/server/api.js +1 -1
- package/lib/servers/model/server/api.js.map +1 -1
- package/lib/servers/model/server/cache.js +3 -3
- package/lib/servers/model/server/cache.js.map +1 -1
- package/lib/servers/model/server/jobs.js +3 -3
- package/lib/servers/model/server/jobs.js.map +1 -1
- package/lib/servers/model/server/query.js +10 -10
- package/lib/servers/model/server/query.js.map +1 -1
- package/lib/servers/model/server/structure-wrapper.js +6 -6
- package/lib/servers/model/server/structure-wrapper.js.map +1 -1
- package/lib/servers/model/server.js +3 -3
- package/lib/servers/model/server.js.map +1 -1
- package/lib/servers/model/utils/fetch-props-pdbe.js +4 -4
- package/lib/servers/model/utils/fetch-props-pdbe.js.map +1 -1
- package/lib/servers/model/utils/writer.js +2 -2
- package/lib/servers/model/utils/writer.js.map +1 -1
- package/lib/servers/plugin-state/api-schema.js +2 -2
- package/lib/servers/plugin-state/api-schema.js.map +1 -1
- package/lib/servers/plugin-state/index.js +1 -1
- package/lib/servers/plugin-state/index.js.map +1 -1
- package/lib/servers/volume/pack/format/dsn6.js +1 -1
- package/lib/servers/volume/pack/format/dsn6.js.map +1 -1
- package/lib/servers/volume/pack/main.js +4 -4
- package/lib/servers/volume/pack/main.js.map +1 -1
- package/lib/servers/volume/pack/writer.js +1 -1
- package/lib/servers/volume/pack/writer.js.map +1 -1
- package/lib/servers/volume/pack.js +1 -1
- package/lib/servers/volume/pack.js.map +1 -1
- package/lib/servers/volume/server/api.js +7 -7
- package/lib/servers/volume/server/api.js.map +1 -1
- package/lib/servers/volume/server/local-api.js +1 -1
- package/lib/servers/volume/server/local-api.js.map +1 -1
- package/lib/servers/volume/server/query/encode.js +3 -3
- package/lib/servers/volume/server/query/encode.js.map +1 -1
- package/lib/servers/volume/server/query/execute.js +5 -5
- package/lib/servers/volume/server/query/execute.js.map +1 -1
- package/lib/servers/volume/server/version.js +1 -1
- package/lib/servers/volume/server/version.js.map +1 -1
- package/lib/servers/volume/server/web-api.js +7 -7
- package/lib/servers/volume/server/web-api.js.map +1 -1
- package/lib/servers/volume/server/web-schema.js +6 -6
- package/lib/servers/volume/server/web-schema.js.map +1 -1
- package/lib/servers/volume/server.js +2 -2
- package/lib/servers/volume/server.js.map +1 -1
- package/lib/tests/browser/font-atlas.js +1 -1
- package/lib/tests/browser/font-atlas.js.map +1 -1
- package/lib/tests/browser/render-shape.js +1 -1
- package/lib/tests/browser/render-shape.js.map +1 -1
- package/lib/tests/browser/render-structure.js +1 -1
- package/lib/tests/browser/render-structure.js.map +1 -1
- package/lib/tsconfig.commonjs.tsbuildinfo +1 -1
- package/package.json +6 -7
- package/CHANGELOG.md +0 -191
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export declare function getIsosurfaceParams(ctx: ThemeRegistryContext, volume: Volume): {
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visuals: PD.MultiSelect<"
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type: "select";
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options: readonly (readonly ["
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options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
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defaultValue: "
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label?: string | undefined;
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description?: string | undefined;
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@@ -325,14 +325,14 @@ export declare function getIsosurfaceParams(ctx: ThemeRegistryContext, volume: V
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export declare type IsosurfaceRepresentation = VolumeRepresentation<IsosurfaceParams>;
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export declare function IsosurfaceRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Volume, IsosurfaceParams>): IsosurfaceRepresentation;
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type: "select";
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options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
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@@ -11,14 +11,14 @@ export declare class VolumeRepresentationRegistry extends RepresentationRegistry
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export declare namespace VolumeRepresentationRegistry {
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export const BuiltIn: {
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isosurface: import("./representation").VolumeRepresentationProvider<{
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visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"
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visuals: import("../../mol-util/param-definition").ParamDefinition.MultiSelect<"solid" | "wireframe">;
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quality: {
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isEssential: boolean;
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type: "select";
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options: readonly (readonly ["
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+
options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
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@@ -71,10 +71,10 @@ export declare namespace VolumeRepresentationRegistry {
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type: "select";
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options: readonly (readonly ["
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options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
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@@ -91,7 +91,7 @@ export declare namespace VolumeRepresentationRegistry {
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}) | undefined;
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};
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dimension: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "
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dimension: import("../../mol-util/param-definition").ParamDefinition.Mapped<import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "x"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "y"> | import("../../mol-util/param-definition").ParamDefinition.NamedParams<number, "z">>;
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isoValue: import("../../mol-util/param-definition").ParamDefinition.Conditioned<Readonly<{
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kind: "absolute";
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absoluteValue: number;
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@@ -114,17 +114,17 @@ export declare namespace VolumeRepresentationRegistry {
|
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relativeValue: number;
|
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}>, number>;
|
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}>;
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interpolation: import("../../mol-util/param-definition").ParamDefinition.Select<"nearest" | "
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interpolation: import("../../mol-util/param-definition").ParamDefinition.Select<"nearest" | "bspline" | "catmulrom" | "mitchell">;
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alpha: import("../../mol-util/param-definition").ParamDefinition.Numeric;
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}, "slice">;
|
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'direct-volume': import("./representation").VolumeRepresentationProvider<{
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quality: {
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type: "select";
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options: readonly (readonly ["
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+
options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
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defaultValue: "
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defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
|
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label?: string | undefined;
|
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|
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|
|
@@ -18,7 +18,7 @@ var VolumeRepresentationRegistry = /** @class */ (function (_super) {
|
|
|
18
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|
var _this = _super.call(this) || this;
|
|
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|
(0, object_1.objectForEach)(VolumeRepresentationRegistry.BuiltIn, function (p, k) {
|
|
20
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|
if (p.name !== k)
|
|
21
|
-
throw new Error("Fix BuiltInVolumeRepresentations to have matching names. "
|
|
21
|
+
throw new Error("Fix BuiltInVolumeRepresentations to have matching names. ".concat(p.name, " ").concat(k));
|
|
22
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|
_this.add(p);
|
|
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|
});
|
|
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|
return _this;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"registry.js","sourceRoot":"","sources":["../../../../src/mol-repr/volume/registry.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,oDAAmG;AAEnG,2CAAgE;AAChE,gDAAsD;AACtD,iCAAsD;AACtD,iDAAqE;AAErE;IAAkD,6DAAoD;IAClG;QAAA,YACI,iBAAO,SAKV;QAJG,IAAA,sBAAa,EAAC,4BAA4B,CAAC,OAAO,EAAE,UAAC,CAAC,EAAE,CAAC;YACrD,IAAI,CAAC,CAAC,IAAI,KAAK,CAAC;gBAAE,MAAM,IAAI,KAAK,CAAC,
|
|
1
|
+
{"version":3,"file":"registry.js","sourceRoot":"","sources":["../../../../src/mol-repr/volume/registry.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,oDAAmG;AAEnG,2CAAgE;AAChE,gDAAsD;AACtD,iCAAsD;AACtD,iDAAqE;AAErE;IAAkD,6DAAoD;IAClG;QAAA,YACI,iBAAO,SAKV;QAJG,IAAA,sBAAa,EAAC,4BAA4B,CAAC,OAAO,EAAE,UAAC,CAAC,EAAE,CAAC;YACrD,IAAI,CAAC,CAAC,IAAI,KAAK,CAAC;gBAAE,MAAM,IAAI,KAAK,CAAC,mEAA4D,CAAC,CAAC,IAAI,cAAI,CAAC,CAAE,CAAC,CAAC;YAC7G,KAAI,CAAC,GAAG,CAAC,CAAQ,CAAC,CAAC;QACvB,CAAC,CAAC,CAAC;;IACP,CAAC;IACL,mCAAC;AAAD,CAAC,AARD,CAAkD,uCAAsB,GAQvE;AARY,oEAA4B;AAUzC,WAAiB,4BAA4B;IAC5B,oCAAO,GAAG;QACnB,YAAY,EAAE,6CAAgC;QAC9C,OAAO,EAAE,mCAA2B;QACpC,eAAe,EAAE,kDAAkC;KACtD,CAAC;AAKN,CAAC,EAVgB,4BAA4B,GAA5B,oCAA4B,KAA5B,oCAA4B,QAU5C;AApBY,oEAA4B"}
|
|
@@ -37,7 +37,7 @@ export declare type VolumeRepresentationProvider<P extends VolumeParams, Id exte
|
|
|
37
37
|
export declare function VolumeRepresentationProvider<P extends VolumeParams, Id extends string>(p: VolumeRepresentationProvider<P, Id>): VolumeRepresentationProvider<P, Id>;
|
|
38
38
|
export declare const VolumeParams: {
|
|
39
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|
alpha: PD.Numeric;
|
|
40
|
-
quality: PD.Select<"
|
|
40
|
+
quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
|
|
41
41
|
};
|
|
42
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|
export declare type VolumeParams = typeof VolumeParams;
|
|
43
43
|
export declare function VolumeRepresentation<P extends VolumeParams>(label: string, ctx: RepresentationContext, getParams: RepresentationParamsGetter<Volume, P>, visualCtor: (materialId: number, volume: Volume, props: PD.Values<P>, webgl?: WebGLContext) => VolumeVisual<P>, getLoci: (volume: Volume, props: PD.Values<P>) => Loci): VolumeRepresentation<P>;
|
|
@@ -15,10 +15,10 @@ export declare const SliceParams: {
|
|
|
15
15
|
quality: {
|
|
16
16
|
isEssential: boolean;
|
|
17
17
|
type: "select";
|
|
18
|
-
options: readonly (readonly ["
|
|
18
|
+
options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
|
|
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|
cycle?: boolean | undefined;
|
|
20
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|
isOptional?: boolean | undefined;
|
|
21
|
-
defaultValue: "
|
|
21
|
+
defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
|
|
22
22
|
label?: string | undefined;
|
|
23
23
|
description?: string | undefined;
|
|
24
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|
legend?: import("../../mol-util/legend").Legend | undefined;
|
|
@@ -35,7 +35,7 @@ export declare const SliceParams: {
|
|
|
35
35
|
legend?: import("../../mol-util/legend").Legend | undefined;
|
|
36
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|
}) | undefined;
|
|
37
37
|
};
|
|
38
|
-
dimension: PD.Mapped<PD.NamedParams<number, "
|
|
38
|
+
dimension: PD.Mapped<PD.NamedParams<number, "x"> | PD.NamedParams<number, "y"> | PD.NamedParams<number, "z">>;
|
|
39
39
|
isoValue: PD.Conditioned<Readonly<{
|
|
40
40
|
kind: "absolute";
|
|
41
41
|
absoluteValue: number;
|
|
@@ -58,7 +58,7 @@ export declare const SliceParams: {
|
|
|
58
58
|
relativeValue: number;
|
|
59
59
|
}>, number>;
|
|
60
60
|
}>;
|
|
61
|
-
interpolation: PD.Select<"nearest" | "
|
|
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|
+
interpolation: PD.Select<"nearest" | "bspline" | "catmulrom" | "mitchell">;
|
|
62
62
|
alpha: PD.Numeric;
|
|
63
63
|
};
|
|
64
64
|
export declare type SliceParams = typeof SliceParams;
|
|
@@ -66,10 +66,10 @@ export declare function getSliceParams(ctx: ThemeRegistryContext, volume: Volume
|
|
|
66
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|
quality: {
|
|
67
67
|
isEssential: boolean;
|
|
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|
type: "select";
|
|
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|
-
options: readonly (readonly ["
|
|
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|
+
options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
|
|
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|
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|
|
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71
|
isOptional?: boolean | undefined;
|
|
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|
-
defaultValue: "
|
|
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|
+
defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
|
|
73
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|
label?: string | undefined;
|
|
74
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|
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|
|
75
75
|
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|
|
@@ -86,7 +86,7 @@ export declare function getSliceParams(ctx: ThemeRegistryContext, volume: Volume
|
|
|
86
86
|
legend?: import("../../mol-util/legend").Legend | undefined;
|
|
87
87
|
}) | undefined;
|
|
88
88
|
};
|
|
89
|
-
dimension: PD.Mapped<PD.NamedParams<number, "
|
|
89
|
+
dimension: PD.Mapped<PD.NamedParams<number, "x"> | PD.NamedParams<number, "y"> | PD.NamedParams<number, "z">>;
|
|
90
90
|
isoValue: PD.Conditioned<Readonly<{
|
|
91
91
|
kind: "absolute";
|
|
92
92
|
absoluteValue: number;
|
|
@@ -109,7 +109,7 @@ export declare function getSliceParams(ctx: ThemeRegistryContext, volume: Volume
|
|
|
109
109
|
relativeValue: number;
|
|
110
110
|
}>, number>;
|
|
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|
}>;
|
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|
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interpolation: PD.Select<"nearest" | "
|
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|
+
interpolation: PD.Select<"nearest" | "bspline" | "catmulrom" | "mitchell">;
|
|
113
113
|
alpha: PD.Numeric;
|
|
114
114
|
};
|
|
115
115
|
export declare function SliceVisual(materialId: number): VolumeVisual<SliceParams>;
|
|
@@ -118,10 +118,10 @@ export declare const SliceRepresentationProvider: VolumeRepresentationProvider<{
|
|
|
118
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|
quality: {
|
|
119
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|
isEssential: boolean;
|
|
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|
type: "select";
|
|
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|
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options: readonly (readonly ["
|
|
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|
+
options: readonly (readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string] | readonly ["auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest", string, string | undefined])[];
|
|
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|
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|
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|
isOptional?: boolean | undefined;
|
|
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|
-
defaultValue: "
|
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|
+
defaultValue: "auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest";
|
|
125
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|
label?: string | undefined;
|
|
126
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|
description?: string | undefined;
|
|
127
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|
legend?: import("../../mol-util/legend").Legend | undefined;
|
|
@@ -138,7 +138,7 @@ export declare const SliceRepresentationProvider: VolumeRepresentationProvider<{
|
|
|
138
138
|
legend?: import("../../mol-util/legend").Legend | undefined;
|
|
139
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|
}) | undefined;
|
|
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|
};
|
|
141
|
-
dimension: PD.Mapped<PD.NamedParams<number, "
|
|
141
|
+
dimension: PD.Mapped<PD.NamedParams<number, "x"> | PD.NamedParams<number, "y"> | PD.NamedParams<number, "z">>;
|
|
142
142
|
isoValue: PD.Conditioned<Readonly<{
|
|
143
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|
kind: "absolute";
|
|
144
144
|
absoluteValue: number;
|
|
@@ -161,6 +161,6 @@ export declare const SliceRepresentationProvider: VolumeRepresentationProvider<{
|
|
|
161
161
|
relativeValue: number;
|
|
162
162
|
}>, number>;
|
|
163
163
|
}>;
|
|
164
|
-
interpolation: PD.Select<"nearest" | "
|
|
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|
+
interpolation: PD.Select<"nearest" | "bspline" | "catmulrom" | "mitchell">;
|
|
165
165
|
alpha: PD.Numeric;
|
|
166
166
|
}, "slice">;
|
|
@@ -20,7 +20,7 @@ var Writer = /** @class */ (function () {
|
|
|
20
20
|
this.localPrefix = ' ';
|
|
21
21
|
};
|
|
22
22
|
Writer.prototype.newline = function () {
|
|
23
|
-
this.value.push("\n"
|
|
23
|
+
this.value.push("\n".concat(this._prefix).concat(this.localPrefix));
|
|
24
24
|
this.currentLineLength = 0;
|
|
25
25
|
};
|
|
26
26
|
Writer.prototype.push = function () {
|
|
@@ -64,13 +64,13 @@ var Writer = /** @class */ (function () {
|
|
|
64
64
|
function _format(e, writer) {
|
|
65
65
|
if (isLiteral(e)) {
|
|
66
66
|
if (typeof e === 'string' && (/\s/.test(e) || !e.length))
|
|
67
|
-
writer.append("`"
|
|
67
|
+
writer.append("`".concat(e, "`"));
|
|
68
68
|
else
|
|
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|
-
writer.append(""
|
|
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|
+
writer.append("".concat(e));
|
|
70
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|
return;
|
|
71
71
|
}
|
|
72
72
|
if (isSymbol(e)) {
|
|
73
|
-
writer.append(""
|
|
73
|
+
writer.append("".concat(e.name));
|
|
74
74
|
return;
|
|
75
75
|
}
|
|
76
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|
writer.push();
|
|
@@ -106,7 +106,7 @@ function _format(e, writer) {
|
|
|
106
106
|
}
|
|
107
107
|
if (keys.length === 1 && isLiteral(e.args[keys[0]])) {
|
|
108
108
|
writer.whitespace();
|
|
109
|
-
writer.append(":"
|
|
109
|
+
writer.append(":".concat(keys[0]));
|
|
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110
|
writer.whitespace();
|
|
111
111
|
_format(e.args[keys[0]], writer);
|
|
112
112
|
writer.pop();
|
|
@@ -115,7 +115,7 @@ function _format(e, writer) {
|
|
|
115
115
|
for (var _b = 0, keys_1 = keys; _b < keys_1.length; _b++) {
|
|
116
116
|
var a = keys_1[_b];
|
|
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117
|
writer.newline();
|
|
118
|
-
writer.append(":"
|
|
118
|
+
writer.append(":".concat(a));
|
|
119
119
|
writer.whitespace();
|
|
120
120
|
_format(e.args[a], writer);
|
|
121
121
|
}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"expression-formatter.js","sourceRoot":"","sources":["../../../../src/mol-script/language/expression-formatter.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,2CAA0C;AAElC,IAAA,SAAS,GAAiC,uBAAU,UAA3C,EAAE,QAAQ,GAAuB,uBAAU,SAAjC,EAAE,gBAAgB,GAAK,uBAAU,iBAAf,CAAgB;AAE7D;IAAA;QACY,UAAK,GAAa,EAAE,CAAC;QACrB,sBAAiB,GAAG,CAAC,CAAC;QACtB,iBAAY,GAAG,CAAC,CAAC;QACjB,YAAO,GAAW,EAAE,CAAC;QACrB,gBAAW,GAAW,EAAE,CAAC;IAiDrC,CAAC;IA/CW,yBAAQ,GAAhB;QACI,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC;IAC5B,CAAC;IAED,wBAAO,GAAP;QACI,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,
|
|
1
|
+
{"version":3,"file":"expression-formatter.js","sourceRoot":"","sources":["../../../../src/mol-script/language/expression-formatter.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,2CAA0C;AAElC,IAAA,SAAS,GAAiC,uBAAU,UAA3C,EAAE,QAAQ,GAAuB,uBAAU,SAAjC,EAAE,gBAAgB,GAAK,uBAAU,iBAAf,CAAgB;AAE7D;IAAA;QACY,UAAK,GAAa,EAAE,CAAC;QACrB,sBAAiB,GAAG,CAAC,CAAC;QACtB,iBAAY,GAAG,CAAC,CAAC;QACjB,YAAO,GAAW,EAAE,CAAC;QACrB,gBAAW,GAAW,EAAE,CAAC;IAiDrC,CAAC;IA/CW,yBAAQ,GAAhB;QACI,IAAI,CAAC,WAAW,GAAG,IAAI,CAAC;IAC5B,CAAC;IAED,wBAAO,GAAP;QACI,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,YAAK,IAAI,CAAC,OAAO,SAAG,IAAI,CAAC,WAAW,CAAE,CAAC,CAAC;QACxD,IAAI,CAAC,iBAAiB,GAAG,CAAC,CAAC;IAC/B,CAAC;IAED,qBAAI,GAAJ;QACI,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACrB,IAAI,CAAC,iBAAiB,GAAG,CAAC,CAAC;QAC3B,IAAI,CAAC,WAAW,GAAG,EAAE,CAAC;QACtB,IAAI,CAAC,YAAY,IAAI,CAAC,CAAC;QACvB,IAAI,CAAC,OAAO,GAAG,IAAI,KAAK,CAAC,IAAI,CAAC,YAAY,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IAC9D,CAAC;IAED,oBAAG,GAAH;QACI,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACrB,IAAI,CAAC,YAAY,IAAI,CAAC,CAAC;QACvB,IAAI,CAAC,OAAO,GAAG,IAAI,KAAK,CAAC,IAAI,CAAC,YAAY,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;IAC9D,CAAC;IAED,uBAAM,GAAN,UAAO,GAAW;QACd,IAAI,CAAC,IAAI,CAAC,iBAAiB,EAAE;YACzB,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;YACrB,IAAI,CAAC,iBAAiB,GAAG,GAAG,CAAC,MAAM,CAAC;SACvC;aAAM,IAAI,IAAI,CAAC,iBAAiB,GAAG,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC,WAAW,CAAC,MAAM,GAAG,GAAG,CAAC,MAAM,GAAG,EAAE,EAAE;YAC/F,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;YACrB,IAAI,CAAC,iBAAiB,IAAI,GAAG,CAAC,MAAM,CAAC;SACxC;aAAM;YACH,IAAI,CAAC,QAAQ,EAAE,CAAC;YAChB,IAAI,CAAC,OAAO,EAAE,CAAC;YACf,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;YACrB,IAAI,CAAC,iBAAiB,GAAG,GAAG,CAAC,MAAM,CAAC;SACvC;IACL,CAAC;IAED,2BAAU,GAAV;QACI,IAAI,IAAI,CAAC,iBAAiB,GAAG,IAAI,CAAC,YAAY,GAAG,IAAI,CAAC,WAAW,CAAC,MAAM,GAAG,CAAC,GAAG,EAAE,EAAE;YAC/E,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;SACxB;IACL,CAAC;IAED,uBAAM,GAAN;QACI,OAAO,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;IAC/B,CAAC;IACL,aAAC;AAAD,CAAC,AAtDD,IAsDC;AAED,SAAS,OAAO,CAAC,CAAa,EAAE,MAAc;IAC1C,IAAI,SAAS,CAAC,CAAC,CAAC,EAAE;QACd,IAAI,OAAO,CAAC,KAAK,QAAQ,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,MAAM,CAAC;YAAE,MAAM,CAAC,MAAM,CAAC,WAAK,CAAC,MAAI,CAAC,CAAC;;YAC/E,MAAM,CAAC,MAAM,CAAC,UAAG,CAAC,CAAE,CAAC,CAAC;QAC3B,OAAO;KACV;IACD,IAAI,QAAQ,CAAC,CAAC,CAAC,EAAE;QACb,MAAM,CAAC,MAAM,CAAC,UAAG,CAAC,CAAC,IAAI,CAAE,CAAC,CAAC;QAC3B,OAAO;KACV;IAED,MAAM,CAAC,IAAI,EAAE,CAAC;IACd,OAAO,CAAC,CAAC,CAAC,IAAI,EAAE,MAAM,CAAC,CAAC;IAExB,IAAI,CAAC,CAAC,CAAC,IAAI,EAAE;QACT,MAAM,CAAC,GAAG,EAAE,CAAC;QACb,OAAO;KACV;IAED,IAAI,gBAAgB,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE;QAC1B,IAAI,WAAW,GAAG,IAAI,CAAC;QACvB,KAAgB,UAAM,EAAN,KAAA,CAAC,CAAC,IAAI,EAAN,cAAM,EAAN,IAAM,EAAE;YAAnB,IAAM,CAAC,SAAA;YACR,IAAI,SAAS,CAAC,CAAC,CAAC,EAAE;gBACd,IAAI,WAAW;oBAAE,MAAM,CAAC,UAAU,EAAE,CAAC;;oBAChC,MAAM,CAAC,OAAO,EAAE,CAAC;gBACtB,WAAW,GAAG,IAAI,CAAC;aACtB;iBAAM;gBACH,WAAW,GAAG,KAAK,CAAC;gBACpB,MAAM,CAAC,OAAO,EAAE,CAAC;aACpB;YACD,OAAO,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC;SACtB;QACD,MAAM,CAAC,GAAG,EAAE,CAAC;QACb,OAAO;KACV;IAED,IAAM,IAAI,GAAG,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;IACjC,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;QACd,MAAM,CAAC,GAAG,EAAE,CAAC;QACb,OAAO;KACV;IAED,IAAI,IAAI,CAAC,MAAM,KAAK,CAAC,IAAI,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE;QACjD,MAAM,CAAC,UAAU,EAAE,CAAC;QACpB,MAAM,CAAC,MAAM,CAAC,WAAI,IAAI,CAAC,CAAC,CAAC,CAAE,CAAC,CAAC;QAC7B,MAAM,CAAC,UAAU,EAAE,CAAC;QACpB,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC;QACjC,MAAM,CAAC,GAAG,EAAE,CAAC;QACb,OAAO;KACV;IAED,KAAgB,UAAI,EAAJ,aAAI,EAAJ,kBAAI,EAAJ,IAAI,EAAE;QAAjB,IAAM,CAAC,aAAA;QACR,MAAM,CAAC,OAAO,EAAE,CAAC;QACjB,MAAM,CAAC,MAAM,CAAC,WAAI,CAAC,CAAE,CAAC,CAAC;QACvB,MAAM,CAAC,UAAU,EAAE,CAAC;QACpB,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC;KAC9B;IACD,MAAM,CAAC,GAAG,EAAE,CAAC;AACjB,CAAC;AAED,SAAgB,eAAe,CAAC,CAAa;IACzC,IAAM,MAAM,GAAG,IAAI,MAAM,EAAE,CAAC;IAC5B,OAAO,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC;IACnB,OAAO,MAAM,CAAC,MAAM,EAAE,CAAC;AAC3B,CAAC;AAJD,0CAIC"}
|
|
@@ -24,17 +24,17 @@ exports.symbolList = symbolList;
|
|
|
24
24
|
function formatKey(key) {
|
|
25
25
|
var regex = /([a-z])([A-Z])([a-z]|$)/g;
|
|
26
26
|
// do this twice because 'xXxX'
|
|
27
|
-
return key.replace(regex, function (s, a, b, c) { return a
|
|
27
|
+
return key.replace(regex, function (s, a, b, c) { return "".concat(a, "-").concat(b.toLocaleLowerCase()).concat(c); }).replace(regex, function (s, a, b, c) { return "".concat(a, "-").concat(b.toLocaleLowerCase()).concat(c); });
|
|
28
28
|
}
|
|
29
29
|
function _normalizeTable(namespace, key, obj) {
|
|
30
30
|
if ((0, symbol_1.isSymbol)(obj)) {
|
|
31
31
|
obj.info.namespace = namespace;
|
|
32
32
|
obj.info.name = obj.info.name || formatKey(key);
|
|
33
|
-
obj.id = obj.info.namespace
|
|
33
|
+
obj.id = "".concat(obj.info.namespace, ".").concat(obj.info.name);
|
|
34
34
|
return;
|
|
35
35
|
}
|
|
36
|
-
var currentNs = ""
|
|
37
|
-
var newNs = namespace ? namespace
|
|
36
|
+
var currentNs = "".concat(obj['@namespace'] || formatKey(key));
|
|
37
|
+
var newNs = namespace ? "".concat(namespace, ".").concat(currentNs) : currentNs;
|
|
38
38
|
for (var _i = 0, _a = Object.keys(obj); _i < _a.length; _i++) {
|
|
39
39
|
var childKey = _a[_i];
|
|
40
40
|
if (typeof obj[childKey] !== 'object' && !(0, symbol_1.isSymbol)(obj[childKey]))
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"helpers.js","sourceRoot":"","sources":["../../../../src/mol-script/language/helpers.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAGH,mCAAwD;AAExD,SAAgB,MAAM,CAA4C,IAAO,EAAE,IAAO,EAAE,WAAoB;IACpG,OAAO,IAAA,gBAAO,EAAC,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,WAAW,CAAC,CAAC;AAChD,CAAC;AAFD,wBAEC;AAED,SAAgB,cAAc,CAAC,KAAU;IACrC,eAAe,CAAC,EAAE,EAAE,EAAE,EAAE,KAAK,CAAC,CAAC;AACnC,CAAC;AAFD,wCAEC;AAED,SAAgB,UAAU,CAAC,KAAU;IACjC,IAAM,IAAI,GAAc,EAAE,CAAC;IAC3B,WAAW,CAAC,KAAK,EAAE,IAAI,CAAC,CAAC;IACzB,OAAO,IAAI,CAAC;AAChB,CAAC;AAJD,gCAIC;AAED,SAAS,SAAS,CAAC,GAAW;IAC1B,IAAM,KAAK,GAAG,0BAA0B,CAAC;IACzC,+BAA+B;IAC/B,OAAO,GAAG,CAAC,OAAO,CAAC,KAAK,EAAE,UAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,IAAK,
|
|
1
|
+
{"version":3,"file":"helpers.js","sourceRoot":"","sources":["../../../../src/mol-script/language/helpers.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAGH,mCAAwD;AAExD,SAAgB,MAAM,CAA4C,IAAO,EAAE,IAAO,EAAE,WAAoB;IACpG,OAAO,IAAA,gBAAO,EAAC,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,WAAW,CAAC,CAAC;AAChD,CAAC;AAFD,wBAEC;AAED,SAAgB,cAAc,CAAC,KAAU;IACrC,eAAe,CAAC,EAAE,EAAE,EAAE,EAAE,KAAK,CAAC,CAAC;AACnC,CAAC;AAFD,wCAEC;AAED,SAAgB,UAAU,CAAC,KAAU;IACjC,IAAM,IAAI,GAAc,EAAE,CAAC;IAC3B,WAAW,CAAC,KAAK,EAAE,IAAI,CAAC,CAAC;IACzB,OAAO,IAAI,CAAC;AAChB,CAAC;AAJD,gCAIC;AAED,SAAS,SAAS,CAAC,GAAW;IAC1B,IAAM,KAAK,GAAG,0BAA0B,CAAC;IACzC,+BAA+B;IAC/B,OAAO,GAAG,CAAC,OAAO,CAAC,KAAK,EAAE,UAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,IAAK,OAAA,UAAG,CAAC,cAAI,CAAC,CAAC,iBAAiB,EAAE,SAAG,CAAC,CAAE,EAAnC,CAAmC,CAAC,CAAC,OAAO,CAAC,KAAK,EAAE,UAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,IAAK,OAAA,UAAG,CAAC,cAAI,CAAC,CAAC,iBAAiB,EAAE,SAAG,CAAC,CAAE,EAAnC,CAAmC,CAAC,CAAC;AACvJ,CAAC;AAED,SAAS,eAAe,CAAC,SAAiB,EAAE,GAAW,EAAE,GAAQ;IAC7D,IAAI,IAAA,iBAAQ,EAAC,GAAG,CAAC,EAAE;QACf,GAAG,CAAC,IAAI,CAAC,SAAS,GAAG,SAAS,CAAC;QAC/B,GAAG,CAAC,IAAI,CAAC,IAAI,GAAG,GAAG,CAAC,IAAI,CAAC,IAAI,IAAI,SAAS,CAAC,GAAG,CAAC,CAAC;QAChD,GAAG,CAAC,EAAE,GAAG,UAAG,GAAG,CAAC,IAAI,CAAC,SAAS,cAAI,GAAG,CAAC,IAAI,CAAC,IAAI,CAAE,CAAC;QAClD,OAAO;KACV;IACD,IAAM,SAAS,GAAG,UAAG,GAAG,CAAC,YAAY,CAAC,IAAI,SAAS,CAAC,GAAG,CAAC,CAAE,CAAC;IAC3D,IAAM,KAAK,GAAG,SAAS,CAAC,CAAC,CAAC,UAAG,SAAS,cAAI,SAAS,CAAE,CAAC,CAAC,CAAC,SAAS,CAAC;IAClE,KAAuB,UAAgB,EAAhB,KAAA,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,EAAhB,cAAgB,EAAhB,IAAgB,EAAE;QAApC,IAAM,QAAQ,SAAA;QACf,IAAI,OAAO,GAAG,CAAC,QAAQ,CAAC,KAAK,QAAQ,IAAI,CAAC,IAAA,iBAAQ,EAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;YAAE,SAAS;QAC5E,eAAe,CAAC,KAAK,EAAE,QAAQ,EAAE,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC;KACnD;AACL,CAAC;AAED,SAAS,WAAW,CAAC,GAAQ,EAAE,IAAe;IAC1C,IAAI,IAAA,iBAAQ,EAAC,GAAG,CAAC,EAAE;QACf,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;QACf,OAAO;KACV;IACD,KAAuB,UAAgB,EAAhB,KAAA,MAAM,CAAC,IAAI,CAAC,GAAG,CAAC,EAAhB,cAAgB,EAAhB,IAAgB,EAAE;QAApC,IAAM,QAAQ,SAAA;QACf,IAAI,OAAO,GAAG,CAAC,QAAQ,CAAC,KAAK,QAAQ,IAAI,CAAC,IAAA,iBAAQ,EAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;YAAE,SAAS;QAC5E,WAAW,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,IAAI,CAAC,CAAC;KACpC;AACL,CAAC"}
|
|
@@ -101,7 +101,7 @@ var Language;
|
|
|
101
101
|
i++;
|
|
102
102
|
}
|
|
103
103
|
if (i >= _i)
|
|
104
|
-
throw new Error("There must be a value foolowed a named arg ':"
|
|
104
|
+
throw new Error("There must be a value foolowed a named arg ':".concat(name_1, "'."));
|
|
105
105
|
args[name_1] = visitExpr(nodes[i]);
|
|
106
106
|
if (isNaN(+name_1))
|
|
107
107
|
allNumeric = false;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
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1
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+
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@@ -34,10 +34,10 @@ var type = {
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34
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'@header': 'Types',
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35
35
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elementSymbol: (0, helpers_1.symbol)(symbol_1.Arguments.Dictionary({ 0: (0, symbol_1.Argument)(type_1.Type.Str) }), Types.ElementSymbol, 'Create element symbol representation from a string value.'),
|
|
36
36
|
atomName: (0, helpers_1.symbol)(symbol_1.Arguments.Dictionary({ 0: (0, symbol_1.Argument)(type_1.Type.AnyValue) }), Types.AtomName, 'Convert a value to an atom name.'),
|
|
37
|
-
entityType: (0, helpers_1.symbol)(symbol_1.Arguments.Dictionary({ 0: (0, symbol_1.Argument)(Types.EntityType) }), Types.EntityType, "Create normalized representation of entity type: "
|
|
38
|
-
bondFlags: (0, helpers_1.symbol)(symbol_1.Arguments.List(Types.BondFlag), Types.BondFlags, "Create bond flags representation from a list of strings. Allowed flags: "
|
|
37
|
+
entityType: (0, helpers_1.symbol)(symbol_1.Arguments.Dictionary({ 0: (0, symbol_1.Argument)(Types.EntityType) }), Types.EntityType, "Create normalized representation of entity type: ".concat(type_1.Type.oneOfValues(Types.EntityType).join(', '), ".")),
|
|
38
|
+
bondFlags: (0, helpers_1.symbol)(symbol_1.Arguments.List(Types.BondFlag), Types.BondFlags, "Create bond flags representation from a list of strings. Allowed flags: ".concat(type_1.Type.oneOfValues(Types.BondFlag).join(', '), ".")),
|
|
39
39
|
ringFingerprint: (0, helpers_1.symbol)(symbol_1.Arguments.List(Types.ElementSymbol, { nonEmpty: true }), Types.RingFingerprint, 'Create ring fingerprint from the supplied atom element list.'),
|
|
40
|
-
secondaryStructureFlags: (0, helpers_1.symbol)(symbol_1.Arguments.List(Types.SecondaryStructureFlag), Types.SecondaryStructureFlags, "Create secondary structure flags representation from a list of strings. Allowed flags: "
|
|
40
|
+
secondaryStructureFlags: (0, helpers_1.symbol)(symbol_1.Arguments.List(Types.SecondaryStructureFlag), Types.SecondaryStructureFlags, "Create secondary structure flags representation from a list of strings. Allowed flags: ".concat(type_1.Type.oneOfValues(Types.SecondaryStructureFlag).join(', '), ".")),
|
|
41
41
|
authResidueId: (0, helpers_1.symbol)(symbol_1.Arguments.Dictionary({
|
|
42
42
|
0: (0, symbol_1.Argument)(type_1.Type.Str, { description: 'auth_asym_id' }),
|
|
43
43
|
1: (0, symbol_1.Argument)(type_1.Type.Num, { description: 'auth_seq_id' }),
|