npm - molstar - Versions diffs - 2.3.7 → 2.3.8 - Mend

molstar 2.3.7 → 2.3.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1415) hide show

package/lib/commonjs/mol-model/structure/structure/properties.js CHANGED Viewed

@@ -22,7 +22,7 @@ function notAtomic() {
 }
 function notCoarse(kind) {
     if (!!kind)
-        throw new Error("Property only available for coarse models (" + kind + ").");
+        throw new Error("Property only available for coarse models (".concat(kind, ")."));
     throw new Error('Property only available for coarse models.');
 }
 // TODO: remove the type checks?

package/lib/commonjs/mol-model/structure/structure/properties.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-model/structure/structure/structure.js CHANGED Viewed

@@ -1228,7 +1228,7 @@ function getSerialMapping(structure) {
     }
     Structure.distance = distance;
     function elementDescription(s) {
-        return s.elementCount === 1 ? '1 element' : s.elementCount + " elements";
+        return s.elementCount === 1 ? '1 element' : "".concat(s.elementCount, " elements");
     }
     Structure.elementDescription = elementDescription;
     function validUnitPair(s, a, b) {

package/lib/commonjs/mol-model/structure/structure/structure.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-model/structure/structure/symmetry.js CHANGED Viewed

@@ -31,7 +31,7 @@ var StructureSymmetry;
                     throw new Error('Can only build assemblies from structures based on 1 model.');
                 assembly = model_1.Symmetry.findAssembly(models[0], asmName);
                 if (!assembly)
-                    throw new Error("Assembly '" + asmName + "' is not defined.");
+                    throw new Error("Assembly '".concat(asmName, "' is not defined."));
                 coordinateSystem = geometry_1.SymmetryOperator.create(assembly.id, linear_algebra_1.Mat4.identity(), { assembly: { id: assembly.id, operId: 0, operList: [] } });
                 assembler = structure_1.Structure.Builder({
                     coordinateSystem: coordinateSystem,
@@ -167,7 +167,7 @@ function getOperatorsForIndex(symmetry, index, i, j, k, modelCenter) {
         for (var u = 0, ul = ncsOperators.length; u < ul; ++u) {
             var ncsOp = ncsOperators[u];
             var matrix = linear_algebra_1.Mat4.mul((0, linear_algebra_1.Mat4)(), symOp.matrix, ncsOp.matrix);
-            var operator = geometry_1.SymmetryOperator.create(symOp.name + " " + ncsOp.name, matrix, {
+            var operator = geometry_1.SymmetryOperator.create("".concat(symOp.name, " ").concat(ncsOp.name), matrix, {
                 assembly: symOp.assembly,
                 ncsId: ncsOp.ncsId,
                 hkl: symOp.hkl,
@@ -271,7 +271,7 @@ function findSymmetryRange(ctx, structure, ijkMin, ijkMax) {
 function findMatesRadius(ctx, structure, radius) {
     return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
         function hash(unit, oper) {
-            return unit.invariantId + "|" + oper.name;
+            return "".concat(unit.invariantId, "|").concat(oper.name);
         }
         var models, symmetry, spacegroup, modelCenter, operators, lookup, added, assembler, units, center, _i, operators_3, oper, _a, units_4, unit, boundingSphere, closeUnits, uI, _uI, closeUnit, h;
         return (0, tslib_1.__generator)(this, function (_b) {

package/lib/commonjs/mol-model/structure/structure/symmetry.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-model/structure/structure/unit.d.ts CHANGED Viewed

@@ -181,10 +181,10 @@ declare namespace Unit {
     export function areOperatorsEqual(a: Unit, b: Unit): boolean;
     export function areConformationsEqual(a: Unit, b: Unit): boolean;
     export function isSameConformation(u: Unit, model: Model): boolean;
-    export function getModelConformationOfKind(kind: Unit.Kind, model: Model): CoarseSphereConformation | CoarseGaussianConformation | import("../model/properties/atomic").AtomicConformation;
-    export function getConformation(u: Unit): CoarseSphereConformation | CoarseGaussianConformation | import("../model/properties/atomic").AtomicConformation;
-    export function getModelHierarchyOfKind(kind: Unit.Kind, model: Model): CoarseElements | import("../model/properties/atomic").AtomicHierarchy;
-    export function getHierarchy(u: Unit): CoarseElements | import("../model/properties/atomic").AtomicHierarchy;
+    export function getModelConformationOfKind(kind: Unit.Kind, model: Model): import("../model/properties/atomic").AtomicConformation | CoarseSphereConformation | CoarseGaussianConformation;
+    export function getConformation(u: Unit): import("../model/properties/atomic").AtomicConformation | CoarseSphereConformation | CoarseGaussianConformation;
+    export function getModelHierarchyOfKind(kind: Unit.Kind, model: Model): import("../model/properties/atomic").AtomicHierarchy | CoarseElements;
+    export function getHierarchy(u: Unit): import("../model/properties/atomic").AtomicHierarchy | CoarseElements;
     export {};
 }
 export { Unit };

package/lib/commonjs/mol-model/structure/structure/util/superposition-db-mapping.js CHANGED Viewed

@@ -113,7 +113,7 @@ function buildIndex(structure, index, sI) {
                 var rI = residueOffset[eI];
                 if (!dbName[rI])
                     continue;
-                var key = dbName[rI] + "-" + accession[rI] + "-" + num[rI];
+                var key = "".concat(dbName[rI], "-").concat(accession[rI], "-").concat(num[rI]);
                 if (!index.has(key)) {
                     index.set(key, { key: key, pivots: (_a = {}, _a[sI] = [unit, eI, elements[residueSegment.end]], _a) });
                 }

package/lib/commonjs/mol-model/structure/structure/util/superposition-db-mapping.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/lib/commonjs/mol-model/volume/volume.js CHANGED Viewed

@@ -55,8 +55,8 @@ var Volume;
         IsoValue.toRelative = toRelative;
         function toString(value) {
             return value.kind === 'relative'
-                ? value.relativeValue.toFixed(2) + " \u03C3"
-                : "" + value.absoluteValue.toPrecision(4);
+                ? "".concat(value.relativeValue.toFixed(2), " \u03C3")
+                : "".concat(value.absoluteValue.toPrecision(4));
         }
         IsoValue.toString = toString;
     })(IsoValue = Volume.IsoValue || (Volume.IsoValue = {}));

package/lib/commonjs/mol-model/volume/volume.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-model-formats/shape/ply.d.ts CHANGED Viewed

@@ -31,7 +31,7 @@ export declare const PlyShapeParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type PlyShapeParams = typeof PlyShapeParams;
 export declare function shapeFromPly(source: PlyFile, params?: {}): Task<ShapeProvider<PlyFile, Mesh, {
@@ -55,5 +55,5 @@ export declare function shapeFromPly(source: PlyFile, params?: {}): Task<ShapePr
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 }>>;

package/lib/commonjs/mol-model-formats/shape/ply.js CHANGED Viewed

@@ -220,7 +220,7 @@ function createShape(plyFile, mesh, coloring, grouping) {
         return color_1.Color.fromRgb(red.value(idx), green.value(idx), blue.value(idx));
     }, function () { return 1; }, // size: constant
     function (groupId) {
-        return label + " " + ids[groupId];
+        return "".concat(label, " ").concat(ids[groupId]);
     });
 }
 function makeShapeGetter() {

package/lib/commonjs/mol-model-formats/shape/ply.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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