npm - molstar - Versions diffs - 2.3.7 → 2.3.8 - Mend

molstar 2.3.7 → 2.3.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1415) hide show

package/lib/extensions/geo-export/usdz-exporter.js CHANGED Viewed

@@ -42,7 +42,7 @@ var UsdzExporter = /** @class */ (function (_super) {
             return;
         this.materialSet.add(materialKey);
         var _a = Color.toRgbNormalized(color), r = _a[0], g = _a[1], b = _a[2];
-        this.materials.push("\ndef Material \"material" + materialKey + "\"\n{\n    token outputs:surface.connect = </material" + materialKey + "/shader.outputs:surface>\n    def Shader \"shader\"\n    {\n        uniform token info:id = \"UsdPreviewSurface\"\n        color3f inputs:diffuseColor = (" + r + "," + g + "," + b + ")\n        float inputs:opacity = " + alpha + "\n        float inputs:metallic = " + this.style.metalness + "\n        float inputs:roughness = " + this.style.roughness + "\n        token outputs:surface\n    }\n}\n");
+        this.materials.push("\ndef Material \"material".concat(materialKey, "\"\n{\n    token outputs:surface.connect = </material").concat(materialKey, "/shader.outputs:surface>\n    def Shader \"shader\"\n    {\n        uniform token info:id = \"UsdPreviewSurface\"\n        color3f inputs:diffuseColor = (").concat(r, ",").concat(g, ",").concat(b, ")\n        float inputs:opacity = ").concat(alpha, "\n        float inputs:metallic = ").concat(this.style.metalness, "\n        float inputs:roughness = ").concat(this.style.roughness, "\n        token outputs:surface\n    }\n}\n"));
     };
     UsdzExporter.prototype.addMeshWithColors = function (input) {
         return __awaiter(this, void 0, void 0, function () {
@@ -138,16 +138,16 @@ var UsdzExporter = /** @class */ (function (_super) {
                                         materialBinding = void 0;
                                         if (faceIndicesByMaterial.size === 1) {
                                             materialKey = faceIndicesByMaterial.keys().next().value;
-                                            materialBinding = "rel material:binding = </material" + materialKey + ">";
+                                            materialBinding = "rel material:binding = </material".concat(materialKey, ">");
                                         }
                                         else {
                                             geomSubsets_1 = [];
                                             faceIndicesByMaterial.forEach(function (faceIndices, materialKey) {
-                                                geomSubsets_1.push("\n    def GeomSubset \"g" + materialKey + "\"\n    {\n        uniform token elementType = \"face\"\n        uniform token familyName = \"materialBind\"\n        int[] indices = [" + faceIndices.join(',') + "]\n        rel material:binding = </material" + materialKey + ">\n    }\n");
+                                                geomSubsets_1.push("\n    def GeomSubset \"g".concat(materialKey, "\"\n    {\n        uniform token elementType = \"face\"\n        uniform token familyName = \"materialBind\"\n        int[] indices = [").concat(faceIndices.join(','), "]\n        rel material:binding = </material").concat(materialKey, ">\n    }\n"));
                                             });
                                             materialBinding = geomSubsets_1.join('');
                                         }
-                                        this_1.meshes.push("\ndef Mesh \"mesh" + this_1.meshes.length + "\"\n{\n    int[] faceVertexCounts = [" + new Array(drawCount / 3).fill(3).join(',') + "]\n    int[] faceVertexIndices = [" + StringBuilder.getString(indexBuilder) + "]\n    point3f[] points = [" + StringBuilder.getString(vertexBuilder) + "]\n    normal3f[] primvars:normals = [" + StringBuilder.getString(normalBuilder) + "] (\n        interpolation = \"vertex\"\n    )\n    uniform token subdivisionScheme = \"none\"\n    " + materialBinding + "\n}\n");
+                                        this_1.meshes.push("\ndef Mesh \"mesh".concat(this_1.meshes.length, "\"\n{\n    int[] faceVertexCounts = [").concat(new Array(drawCount / 3).fill(3).join(','), "]\n    int[] faceVertexIndices = [").concat(StringBuilder.getString(indexBuilder), "]\n    point3f[] points = [").concat(StringBuilder.getString(vertexBuilder), "]\n    normal3f[] primvars:normals = [").concat(StringBuilder.getString(normalBuilder), "] (\n        interpolation = \"vertex\"\n    )\n    uniform token subdivisionScheme = \"none\"\n    ").concat(materialBinding, "\n}\n"));
                                         return [2 /*return*/];
                                 }
                             });
@@ -176,7 +176,7 @@ var UsdzExporter = /** @class */ (function (_super) {
             return __generator(this, function (_c) {
                 switch (_c.label) {
                     case 0:
-                        header = "#usda 1.0\n(\n    customLayerData = {\n        string creator = \"Mol* " + PLUGIN_VERSION + "\"\n    }\n    metersPerUnit = 1\n)\n";
+                        header = "#usda 1.0\n(\n    customLayerData = {\n        string creator = \"Mol* ".concat(PLUGIN_VERSION, "\"\n    }\n    metersPerUnit = 1\n)\n");
                         usda = __spreadArray(__spreadArray([header], this.materials, true), this.meshes, true).join('');
                         usdaData = new Uint8Array(usda.length);
                         asciiWrite(usdaData, usda);

package/lib/extensions/geo-export/usdz-exporter.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/lib/extensions/mp4-export/controls.js CHANGED Viewed

@@ -69,7 +69,7 @@ var Mp4Controls = /** @class */ (function (_super) {
                     case 1:
                         movie = _d.sent();
                         filename = anim.anim.display.name.toLowerCase().replace(/\s/g, '-').replace(/[^a-z0-9_\-]/g, '');
-                        return [2 /*return*/, { movie: movie, filename: ((_c = this.plugin.helpers.viewportScreenshot) === null || _c === void 0 ? void 0 : _c.getFilename('')) + "_" + filename + ".mp4" }];
+                        return [2 /*return*/, { movie: movie, filename: "".concat((_c = this.plugin.helpers.viewportScreenshot) === null || _c === void 0 ? void 0 : _c.getFilename(''), "_").concat(filename, ".mp4") }];
                     case 2:
                         e_1 = _d.sent();
                         this.plugin.log.error('' + e_1);

package/lib/extensions/mp4-export/controls.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"controls.js","sourceRoot":"","sources":["../../../src/extensions/mp4-export/controls.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,EAAE,YAAY,EAAE,MAAM,gBAAgB,CAAC;AAE9C,OAAO,EAAE,eAAe,EAAE,MAAM,kCAAkC,CAAC;AAEnE,OAAO,EAAE,IAAI,EAAE,MAAM,gBAAgB,CAAC;AACtC,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,iCAAiC,CAAC;AACxE,OAAO,EAAE,kBAAkB,EAAE,MAAM,WAAW,CAAC;AAO/C,MAAM,CAAC,IAAM,kBAAkB,GAAG;IAC9B,YAAY,EAAE,EAAE,CAAC,OAAO,CAAC,EAAE,EAAE,EAAE,GAAG,EAAE,EAAE,EAAE,GAAG,EAAE,EAAE,EAAE,EAAE,EAAE,WAAW,EAAE,8BAA8B,EAAE,CAAC;CACtG,CAAC;AAEF;IAAiC,+BAAe;IAmH5C,qBAAoB,MAAqB;QAAzC,YACI,iBAAO,SAGV;QAJmB,YAAM,GAAN,MAAM,CAAe;QAlHjC,kBAAY,GAAG,IAAI,GAAG,EAAU,CAAC;QACjC,gBAAU,GAA2B,EAAE,CAAC;QAEvC,eAAS,GAAG;YACjB,UAAU,EAAE,KAAI,CAAC,EAAE,CAAC,QAAQ,CAAY,EAAG,CAAC;YAC5C,OAAO,EAAE,KAAI,CAAC,EAAE,CAAC,QAAQ,CAA6E,KAAK,CAAC,CAAC;YAC7G,QAAQ,EAAE,KAAI,CAAC,EAAE,CAAC,QAAQ,CAAgC,EAAE,QAAQ,EAAE,KAAK,EAAE,CAAC;YAC9E,IAAI,EAAE,KAAI,CAAC,EAAE,CAAC,QAAQ,CAAmB,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC;YACjE,MAAM,EAAE,KAAI,CAAC,EAAE,CAAC,QAAQ,CAAuC,EAAE,CAAC,gBAAgB,CAAC,kBAAkB,CAAC,CAAC;SAC1G,CAAA;QA4GG,KAAI,CAAC,IAAI,EAAE,CAAC;;IAChB,CAAC;IA3GD,gCAAU,GAAV,UAAW,IAAa;;QACpB,IAAM,IAAI,GAAG,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,IAAI,KAAK,IAAI,EAAf,CAAe,CAAC,CAAC;QACxD,IAAI,CAAC,IAAI,EAAE;YACP,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;YAClC,OAAO;SACV;QAED,IAAM,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC,IAAI,CAAC,MAAM,CAAc,CAAC;QACrD,IAAM,MAAM,GAAG,EAAE,CAAC,gBAAgB,CAAC,MAAM,CAAC,CAAC;QAE3C,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,IAAI,CAAC,EAAE,IAAI,MAAA,EAAE,MAAM,QAAA,EAAE,MAAM,QAAA,EAAE,CAAC,CAAC;QACtD,IAAI,CAAC,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAA,MAAA,IAAI,CAAC,QAAQ,+CAAb,IAAI,EAAY,IAAI,CAAC,MAAM,CAAC,mCAAI,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC,CAAC;IACrF,CAAC;IAED,sCAAgB,GAAhB,UAAiB,MAAW;QACxB,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,IAAI,uBAAM,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,KAAM,KAAE,MAAM,QAAA,IAAG,CAAC;IAC9E,CAAC;IAED,sBAAI,gCAAO;aAAX;YACI,OAAO,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,KAAK,CAAC;QACxC,CAAC;;;OAAA;IAED,4BAAM,GAAN;QAAA,iBAwBC;QAvBG,IAAM,IAAI,GAAG,IAAI,CAAC,MAAM,CAAC,kBAAkB,EAAE,UAAM,GAAG;;;;;;;wBAExC,UAAU,GAAG,MAAA,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,kBAAkB,0CAAE,kBAAkB,EAAG,CAAC;wBAC3E,IAAI,GAAG,IAAI,CAAC,OAAQ,CAAC;wBACb,qBAAM,kBAAkB,CAAC,IAAI,CAAC,MAAM,EAAE,GAAG,sBACnD,SAAS,EAAE;oCACP,UAAU,EAAE,IAAI,CAAC,IAAI;oCACrB,MAAM,EAAE,IAAI,CAAC,MAAM;iCACtB,IACE,UAAU,KACb,qBAAqB,EAAE,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,KAAK,CAAC,YAAY,EAC/D,IAAI,EAAE,MAAA,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,kBAAkB,0CAAE,SAAU,IAC1D,EAAA;;wBARI,KAAK,GAAG,SAQZ;wBAEI,QAAQ,GAAG,IAAI,CAAC,IAAI,CAAC,OAAO,CAAC,IAAI,CAAC,WAAW,EAAE,CAAC,OAAO,CAAC,KAAK,EAAE,GAAG,CAAC,CAAC,OAAO,CAAC,eAAe,EAAE,EAAE,CAAC,CAAC;wBACvG,sBAAO,EAAE,KAAK,OAAA,EAAE,QAAQ,EAAE,UAAG,MAAA,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,kBAAkB,0CAAE,WAAW,CAAC,EAAE,CAAC,cAAI,QAAQ,SAAM,EAAE,EAAC;;;wBAEzG,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,EAAE,GAAG,GAAC,CAAC,CAAC;wBAC9B,MAAM,GAAC,CAAC;;;;aAEf,CAAC,CAAC;QAEH,OAAO,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,UAAU,EAAE,IAAI,EAAE,CAAC,CAAC;IAC3D,CAAC;IAED,sBAAY,gCAAO;aAAnB;YACI,OAAO,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC;QAC1C,CAAC;;;OAAA;IAEO,8BAAQ,GAAhB;QACI,IAAM,MAAM,GAAG,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,kBAAkB,CAAC;QACtD,IAAM,IAAI,GAAG,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,kBAAkB,EAAE,CAAC;QAC1C,IAAI,CAAC,IAAI;YAAE,OAAO;QAElB,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,KAAK,EAAE,IAAI,CAAC,QAAQ,CAAC,KAAK,EAAE,MAAM,EAAE,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,CAAC;IAC3F,CAAC;IAEO,0BAAI,GAAZ;QAAA,iBAsBC;;QArBG,IAAM,UAAU,GAAG,IAAI,CAAC,OAAO,CAAC,UAAU,CAAC,MAAM,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,YAAY,EAAd,CAAc,CAAC,CAAC;QAEvE,IAAM,MAAM,GAAG,UAAU,CAAC,KAAK,CAAC,UAAA,CAAC,IAAI,OAAA,KAAI,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,EAA7B,CAA6B,CAAC,CAAC;QACpE,IAAI,MAAM,IAAI,IAAI,CAAC,YAAY,CAAC,IAAI,KAAK,UAAU,CAAC,MAAM,EAAE;YACxD,OAAO;SACV;QAED,IAAM,MAAM,GAAG;YACX,OAAO,EAAE,EAAE,CAAC,MAAM,CAAC,MAAA,UAAU,CAAC,CAAC,CAAC,0CAAE,IAAI,EAClC,UAAU,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,OAAO,CAAC,IAAI,CAAqB,EAA5C,CAA4C,CAAC,EACjE,EAAE,KAAK,EAAE,WAAW,EAAE,CAAC;SAC9B,CAAC;QAEF,IAAM,OAAO,GAAG,IAAI,CAAC,SAAS,CAAC,OAAO,CAAC,KAAK,CAAC;QAC7C,IAAM,UAAU,GAAG,CAAC,CAAC,UAAU,CAAC,IAAI,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,IAAI,MAAK,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,IAAI,CAAC,IAAI,CAAA,EAA7B,CAA6B,CAAC,CAAC;QAEzE,IAAI,CAAC,UAAU,GAAG,UAAU,CAAC;QAC7B,IAAI,CAAC,UAAU,EAAE;YACb,IAAI,CAAC,UAAU,CAAC,MAAA,UAAU,CAAC,CAAC,CAAC,0CAAE,IAAI,CAAC,CAAC;SACxC;QACD,IAAI,CAAC,SAAS,CAAC,UAAU,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;IAC3C,CAAC;IAEO,0BAAI,GAAZ;QAAA,iBAiBC;;QAhBG,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,YAAY,CAAC,EAAE,CAAC,CAAC,EAAE;YACjF,KAAI,CAAC,IAAI,EAAE,CAAC;QAChB,CAAC,CAAC,CAAC;QAEH,IAAI,CAAC,SAAS,CAAC,MAAA,IAAI,CAAC,MAAM,CAAC,QAAQ,0CAAE,OAAQ,EAAE,cAAM,OAAA,KAAI,CAAC,QAAQ,EAAE,EAAf,CAAe,CAAC,CAAC;QACtE,IAAI,CAAC,SAAS,CAAC,MAAA,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,kBAAkB,0CAAE,MAAM,CAAC,SAAU,EAAE,cAAM,OAAA,KAAI,CAAC,QAAQ,EAAE,EAAf,CAAe,CAAC,CAAC;QAEjG,IAAI,CAAC,SA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package/lib/extensions/pdbe/structure-quality-report/behavior.js CHANGED Viewed

@@ -38,7 +38,7 @@ export var PDBeStructureQualityReport = PluginBehavior.create({
                             var issues = StructureQualityReport.getIssues(se);
                             if (issues.length === 0)
                                 return 'Validation: No Issues';
-                            return "Validation: " + issues.join(', ');
+                            return "Validation: ".concat(issues.join(', '));
                         default: return void 0;
                     }
                 }

package/lib/extensions/pdbe/structure-quality-report/behavior.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/extensions/pdbe/structure-quality-report/prop.js CHANGED Viewed

@@ -26,7 +26,7 @@ var StructureQualityReport;
 (function (StructureQualityReport) {
     StructureQualityReport.DefaultServerUrl = 'https://www.ebi.ac.uk/pdbe/api/validation/residuewise_outlier_summary/entry/';
     function getEntryUrl(pdbId, serverUrl) {
-        return serverUrl + "/" + pdbId.toLowerCase();
+        return "".concat(serverUrl, "/").concat(pdbId.toLowerCase());
     }
     StructureQualityReport.getEntryUrl = getEntryUrl;
     function isApplicable(model) {

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package/lib/extensions/rcsb/assembly-symmetry/behavior.d.ts CHANGED Viewed

@@ -26,17 +26,17 @@ declare const AssemblySymmetry3D: StateTransformer<PluginStateObject.Molecule.St
     xrayShaded: boolean;
     alpha: number;
     quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
-    axesColor: PD.NamedParams<PD.Normalize<unknown>, "byOrder"> | PD.NamedParams<PD.Normalize<{
+    axesColor: PD.NamedParams<PD.Normalize<{
         colorValue: any;
-    }>, "uniform">;
+    }>, "uniform"> | PD.NamedParams<PD.Normalize<unknown>, "byOrder">;
 }>>;
 export declare const AssemblySymmetryPresetParams: {
     ignoreHydrogens: PD.Base<boolean | undefined>;
     quality: PD.Base<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest" | undefined>;
     theme: PD.Base<PD.Normalize<{
-        globalName: "occupancy" | "uniform" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | undefined;
-        carbonColor: "chain-id" | "operator-name" | "element-symbol" | undefined;
-        symmetryColor: "occupancy" | "uniform" | "atom-id" | "carbohydrate-symbol" | "chain-id" | "element-index" | "operator-name" | "element-symbol" | "entity-id" | "entity-source" | "hydrophobicity" | "illustrative" | "model-index" | "molecule-type" | "operator-hkl" | "partial-charge" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "uncertainty" | "unit-index" | undefined;
+        globalName: "uniform" | "occupancy" | "element-symbol" | "element-index" | "carbohydrate-symbol" | "chain-id" | "operator-name" | "molecule-type" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "unit-index" | "uncertainty" | "entity-source" | "illustrative" | "hydrophobicity" | "model-index" | "operator-hkl" | "partial-charge" | "atom-id" | "entity-id" | undefined;
+        carbonColor: "element-symbol" | "chain-id" | "operator-name" | undefined;
+        symmetryColor: "uniform" | "occupancy" | "element-symbol" | "element-index" | "carbohydrate-symbol" | "chain-id" | "operator-name" | "molecule-type" | "polymer-id" | "polymer-index" | "residue-name" | "secondary-structure" | "sequence-id" | "shape-group" | "unit-index" | "uncertainty" | "entity-source" | "illustrative" | "hydrophobicity" | "model-index" | "operator-hkl" | "partial-charge" | "atom-id" | "entity-id" | undefined;
         focus: PD.Normalize<{
             name: any;
             params: any;

package/lib/extensions/rcsb/assembly-symmetry/behavior.js CHANGED Viewed

@@ -95,7 +95,7 @@ export var InitAssemblySymmetry3D = StateAction.build({
                     return [3 /*break*/, 4];
                 case 3:
                     e_1 = _a.sent();
-                    plugin.log.error("Assembly Symmetry: " + e_1);
+                    plugin.log.error("Assembly Symmetry: ".concat(e_1));
                     return [2 /*return*/];
                 case 4:
                     tree = state.build().to(ref)
@@ -145,7 +145,7 @@ var AssemblySymmetry3D = PluginStateTransform.BuiltIn({
                     case 2:
                         _b.sent();
                         type = assemblySymmetry.type, kind = assemblySymmetry.kind, symbol = assemblySymmetry.symbol;
-                        return [2 /*return*/, new PluginStateObject.Shape.Representation3D({ repr: repr, sourceData: a.data }, { label: kind, description: type + " (" + symbol + ")" })];
+                        return [2 /*return*/, new PluginStateObject.Shape.Representation3D({ repr: repr, sourceData: a.data }, { label: kind, description: "".concat(type, " (").concat(symbol, ")") })];
                 }
             });
         }); });
@@ -173,7 +173,7 @@ var AssemblySymmetry3D = PluginStateTransform.BuiltIn({
                         b.data.sourceData = a.data;
                         type = assemblySymmetry.type, kind = assemblySymmetry.kind, symbol = assemblySymmetry.symbol;
                         b.label = kind;
-                        b.description = type + " (" + symbol + ")";
+                        b.description = "".concat(type, " (").concat(symbol, ")");
                         return [2 /*return*/, StateTransformer.UpdateResult.Updated];
                 }
             });

package/lib/extensions/rcsb/assembly-symmetry/behavior.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/lib/extensions/rcsb/assembly-symmetry/color.js CHANGED Viewed

@@ -20,7 +20,7 @@ function getAsymId(unit) {
     }
 }
 function clusterMemberKey(asymId, operList) {
-    return asymId + "-" + operList.join('|');
+    return "".concat(asymId, "-").concat(operList.join('|'));
 }
 export var AssemblySymmetryClusterColorThemeParams = __assign({}, getPaletteParams({ colorList: 'red-yellow-blue' }));
 export function getAssemblySymmetryClusterColorThemeParams(ctx) {

package/lib/extensions/rcsb/assembly-symmetry/color.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"color.js","sourceRoot":"","sources":["../../../../src/extensions/rcsb/assembly-symmetry/color.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAIH,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,oCAAoC,CAAC;AAC3E,OAAO,EAAE,wBAAwB,EAAE,gBAAgB,EAAE,MAAM,QAAQ,CAAC;AACpE,OAAO,EAAE,KAAK,EAAE,MAAM,yBAAyB,CAAC;AAChD,OAAO,EAAQ,gBAAgB,EAAE,mBAAmB,EAAE,IAAI,EAAE,MAAM,8BAA8B,CAAC;AAGjG,OAAO,EAAE,UAAU,EAAE,gBAAgB,EAAE,MAAM,iCAAiC,CAAC;AAG/E,IAAM,YAAY,GAAG,KAAK,CAAC,QAAQ,CAAC,CAAC;AAErC,SAAS,SAAS,CAAC,IAAU;IACzB,QAAQ,IAAI,CAAC,IAAI,EAAE;QACf;YACI,OAAO,mBAAmB,CAAC,KAAK,CAAC,aAAa,CAAC;QACnD,qBAAuB;QACvB;YACI,OAAO,mBAAmB,CAAC,MAAM,CAAC,OAAO,CAAC;KACjD;AACL,CAAC;AAED,SAAS,gBAAgB,CAAC,MAAc,EAAE,QAAkB;IACxD,OAAO,UAAG,MAAM,cAAI,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,CAAE,CAAC;AAC7C,CAAC;AAED,MAAM,CAAC,IAAM,uCAAuC,gBAC7C,gBAAgB,CAAC,EAAE,SAAS,EAAE,iBAAiB,EAAE,CAAC,CACxD,CAAC;AAEF,MAAM,UAAU,0CAA0C,CAAC,GAAqB;IAC5E,IAAM,MAAM,GAAG,EAAE,CAAC,KAAK,CAAC,uCAAuC,CAAC,CAAC;IACjE,OAAO,MAAM,CAAC;AAClB,CAAC;AAED,MAAM,UAAU,iCAAiC,CAAC,GAAqB,EAAE,KAAyD;;IAC9H,IAAI,KAAK,GAAkB,cAAM,OAAA,YAAY,EAAZ,CAAY,CAAC;IAC9C,IAAI,MAA6C,CAAC;IAElD,IAAM,gBAAgB,GAAG,GAAG,CAAC,SAAS,IAAI,wBAAwB,CAAC,GAAG,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;IACtF,IAAM,WAAW,GAAG,gBAAgB,aAAhB,gBAAgB,uBAAhB,gBAAgB,CAAE,OAAO,CAAC;IAE9C,IAAM,QAAQ,GAAG,MAAA,gBAAgB,aAAhB,gBAAgB,uBAAhB,gBAAgB,CAAE,KAAK,0CAAE,QAAQ,CAAC;IAEnD,IAAI,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,MAAM,KAAI,GAAG,CAAC,SAAS,EAAE;QACnC,IAAM,GAAC,GAAG,gBAAgB,CAAC,QAAQ,CAAC,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;QAE1D,IAAM,iBAAe,GAAG,IAAI,GAAG,EAAkB,CAAC;QAClD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,QAAQ,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YACvC,IAAA,OAAO,GAAK,QAAQ,CAAC,CAAC,CAAE,QAAjB,CAAkB;YACjC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;gBAC9C,IAAM,MAAM,GAAG,OAAO,CAAC,CAAC,CAAE,CAAC,OAAO,CAAC;gBACnC,IAAM,QAAQ,GAAG,kBAAI,OAAO,CAAC,CAAC,CAAE,CAAC,yBAAyB,IAAI,EAAE,OAAa,CAAC;gBAC9E,iBAAe,CAAC,GAAG,CAAC,gBAAgB,CAAC,MAAM,EAAE,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC;gBAC3D,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC,EAAE;oBACvB,QAAQ,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,4DAA4D;oBAChF,iBAAe,CAAC,GAAG,CAAC,gBAAgB,CAAC,MAAM,EAAE,QAAQ,CAAC,EAAE,CAAC,CAAC,CAAC;iBAC9D;aACJ;SACJ;QACD,IAAM,SAAO,GAAG,UAAU,CAAC,QAAQ,CAAC,MAAM,EAAE,KAAK,CAAC,CAAC;QACnD,MAAM,GAAG,SAAO,CAAC,MAAM,CAAC;QAExB,IAAM,YAAU,GAAU,EAAE,CAAC;QAC7B,IAAM,UAAQ,GAAG,UAAC,QAAmC;YACzC,IAAA,QAAQ,GAAK,QAAQ,CAAC,IAAI,CAAC,YAAY,CAAC,QAAQ,SAAxC,CAAyC;YACzD,IAAM,MAAM,GAAG,SAAS,CAAC,QAAQ,CAAC,IAAI,CAAC,CAAC,QAAQ,CAAC,CAAC;YAClD,IAAM,OAAO,GAAG,iBAAe,CAAC,GAAG,CAAC,gBAAgB,CAAC,MAAM,EAAE,CAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,QAAQ,KAAI,YAAU,CAAC,CAAC,CAAC;YAChG,OAAO,OAAO,KAAK,SAAS,CAAC,CAAC,CAAC,SAAO,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,YAAY,CAAC;QACzE,CAAC,CAAC;QAEF,KAAK,GAAG,UAAC,QAAkB;YACvB,IAAI,gBAAgB,CAAC,QAAQ,CAAC,EAAE,CAAC,QAAQ,CAAC,EAAE;gBACxC,OAAO,UAAQ,CAAC,QAAQ,CAAC,CAAC;aAC7B;iBAAM,IAAI,IAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE;gBAClC,GAAC,CAAC,IAAI,GAAG,QAAQ,CAAC,KAAK,CAAC;gBACxB,GAAC,CAAC,OAAO,GAAG,QAAQ,CAAC,KAAK,CAAC,QAAQ,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC;gBACrD,OAAO,UAAQ,CAAC,GAAC,CAAC,CAAC;aACtB;YACD,OAAO,YAAY,CAAC;QACxB,CAAC,CAAC;KACL;IAED,OAAO;QACH,OAAO,EAAE,iCAAiC;QAC1C,WAAW,EAAE,UAAU;QACvB,KAAK,OAAA;QACL,KAAK,OAAA;QACL,WAAW,aAAA;QACX,WAAW,EAAE,2HAA2H;QACxI,MAAM,QAAA;KACT,CAAC;AACN,CAAC;AAED,MAAM,CAAC,IAAM,yCAAyC,GAA+F;IACjJ,IAAI,EAAE,gBAAgB,CAAC,GAAG,CAAC,OAAO;IAClC,KAAK,EAAE,2BAA2B;IAClC,QAAQ,2BAA8B;IACtC,OAAO,EAAE,iCAAiC;IAC1C,SAAS,EAAE,0CAA0C;IACrD,aAAa,EAAE,EAAE,CAAC,gBAAgB,CAAC,uCAAuC,CAAC;IAC3E,YAAY,EAAE,UAAC,GAAqB,IAAK,OAAA,gBAAgB,CAAC,YAAY,CAAC,GAAG,CAAC,SAAS,CAAC,EAA5C,CAA4C;IACrF,sBAAsB,EAAE;QACpB,MAAM,EAAE,UAAC,GAA2B,EAAE,IAAsB,IAAK,OAAA,IAAI,CAAC,SAAS,CAAC,CAAC,CAAC,wBAAwB,CAAC,MAAM,CAAC,GAAG,EAAE,IAAI,CAAC,SAAS,EAAE,KAAK,CAAC,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,OAAO,EAAE,EAAvG,CAAuG;QACxK,MAAM,EAAE,UAAC,IAAI,IAAK,OAAA,IAAI,CAAC,SAAS,IAAI,wBAAwB,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,EAAE,KAAK,CAAC,EAArE,CAAqE;KAC1F;CACJ,CAAC"}

package/lib/extensions/rcsb/assembly-symmetry/prop.js CHANGED Viewed

@@ -139,7 +139,7 @@ export function getSymmetrySelectParam(structure) {
             for (var i = 0, il = assemblySymmetryData.length; i < il; ++i) {
                 var _a = assemblySymmetryData[i], symbol = _a.symbol, kind = _a.kind;
                 if (symbol !== 'C1') {
-                    options.push([i, i + 1 + ": " + symbol + " " + kind]);
+                    options.push([i, "".concat(i + 1, ": ").concat(symbol, " ").concat(kind)]);
                 }
             }
             if (options.length > 1) {
@@ -206,7 +206,7 @@ export var AssemblySymmetryProvider = CustomStructureProperty.createProvider({
                     assemblySymmetryData = AssemblySymmetryDataProvider.get(data).value;
                     assemblySymmetry = assemblySymmetryData === null || assemblySymmetryData === void 0 ? void 0 : assemblySymmetryData[p.symmetryIndex];
                     if (!assemblySymmetry)
-                        new Error("No assembly symmetry found for index " + p.symmetryIndex);
+                        new Error("No assembly symmetry found for index ".concat(p.symmetryIndex));
                     return [2 /*return*/, { value: assemblySymmetry }];
             }
         });

package/lib/extensions/rcsb/assembly-symmetry/prop.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/extensions/rcsb/assembly-symmetry/representation.d.ts CHANGED Viewed

@@ -18,9 +18,9 @@ export declare const AssemblySymmetryParams: {
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
     quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
-    axesColor: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "byOrder"> | PD.NamedParams<PD.Normalize<{
+    axesColor: PD.Mapped<PD.NamedParams<PD.Normalize<{
         colorValue: Color;
-    }>, "uniform">>;
+    }>, "uniform"> | PD.NamedParams<PD.Normalize<unknown>, "byOrder">>;
 };
 export declare type AssemblySymmetryParams = typeof AssemblySymmetryParams;
 export declare type AssemblySymmetryProps = PD.Values<AssemblySymmetryParams>;

package/lib/extensions/rcsb/assembly-symmetry/representation.js CHANGED Viewed

@@ -61,7 +61,7 @@ export var AssemblySymmetryParams = __assign(__assign(__assign({}, AxesParams),
 function getAssemblyName(s) {
     var _a;
     var id = ((_a = s.units[0].conformation.operator.assembly) === null || _a === void 0 ? void 0 : _a.id) || '';
-    return isInteger(id) ? "Assembly " + id : id;
+    return isInteger(id) ? "Assembly ".concat(id) : id;
 }
 var t = Mat4.identity();
 var tmpV = Vec3();
@@ -143,9 +143,9 @@ function getAxesShape(ctx, data, props, shape) {
         var type = assemblySymmetry.type, symbol = assemblySymmetry.symbol, kind = assemblySymmetry.kind, rotation_axes = assemblySymmetry.rotation_axes;
         var order = (_a = rotation_axes[groupId]) === null || _a === void 0 ? void 0 : _a.order;
         return [
-            "<small>" + data.model.entryId + "</small>",
-            "<small>" + getAssemblyName(data) + "</small>",
-            "Axis " + (groupId + 1) + " with Order " + order + " of " + type + " " + kind + " (" + symbol + ")"
+            "<small>".concat(data.model.entryId, "</small>"),
+            "<small>".concat(getAssemblyName(data), "</small>"),
+            "Axis ".concat(groupId + 1, " with Order ").concat(order, " of ").concat(type, " ").concat(kind, " (").concat(symbol, ")")
         ].join(' | ');
     };
     return Shape.create('Axes', data, geo, getColor, function () { return 1; }, getLabel);
@@ -346,9 +346,9 @@ function getCageShape(ctx, data, props, shape) {
         var type = assemblySymmetry.type, symbol = assemblySymmetry.symbol, kind = assemblySymmetry.kind;
         data.model.entryId;
         return [
-            "<small>" + data.model.entryId + "</small>",
-            "<small>" + getAssemblyName(data) + "</small>",
-            "Cage of " + type + " " + kind + " (" + symbol + ")"
+            "<small>".concat(data.model.entryId, "</small>"),
+            "<small>".concat(getAssemblyName(data), "</small>"),
+            "Cage of ".concat(type, " ").concat(kind, " (").concat(symbol, ")")
         ].join(' | ');
     };
     return Shape.create('Cage', data, geo, getColor, function () { return 1; }, getLabel);

package/lib/extensions/rcsb/assembly-symmetry/representation.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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