molstar 2.3.7 → 2.3.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1415) hide show
  1. package/build/viewer/molstar.css +1 -2
  2. package/build/viewer/molstar.js +1 -1
  3. package/lib/apps/docking-viewer/index.js +1 -1
  4. package/lib/apps/docking-viewer/index.js.map +1 -1
  5. package/lib/apps/viewer/index.d.ts +1 -1
  6. package/lib/apps/viewer/index.js +3 -3
  7. package/lib/apps/viewer/index.js.map +1 -1
  8. package/lib/cli/chem-comp-dict/create-ions.js +1 -1
  9. package/lib/cli/chem-comp-dict/create-ions.js.map +1 -1
  10. package/lib/cli/chem-comp-dict/create-table.js +3 -3
  11. package/lib/cli/chem-comp-dict/create-table.js.map +1 -1
  12. package/lib/cli/chem-comp-dict/util.js +2 -2
  13. package/lib/cli/chem-comp-dict/util.js.map +1 -1
  14. package/lib/cli/cif2bcif/converter.js +2 -2
  15. package/lib/cli/cif2bcif/converter.js.map +1 -1
  16. package/lib/cli/cifschema/index.js +12 -12
  17. package/lib/cli/cifschema/index.js.map +1 -1
  18. package/lib/cli/cifschema/util/cif-dic.js +19 -19
  19. package/lib/cli/cifschema/util/cif-dic.js.map +1 -1
  20. package/lib/cli/cifschema/util/generate.js +21 -21
  21. package/lib/cli/cifschema/util/generate.js.map +1 -1
  22. package/lib/cli/cifschema/util/schema.js +1 -1
  23. package/lib/cli/cifschema/util/schema.js.map +1 -1
  24. package/lib/cli/lipid-params/index.js +3 -3
  25. package/lib/cli/lipid-params/index.js.map +1 -1
  26. package/lib/cli/state-docs/index.js +4 -4
  27. package/lib/cli/state-docs/index.js.map +1 -1
  28. package/lib/cli/state-docs/pd-to-md.js +10 -10
  29. package/lib/cli/state-docs/pd-to-md.js.map +1 -1
  30. package/lib/cli/structure-info/model.js +18 -18
  31. package/lib/cli/structure-info/model.js.map +1 -1
  32. package/lib/cli/structure-info/volume.js +1 -1
  33. package/lib/cli/structure-info/volume.js.map +1 -1
  34. package/lib/commonjs/apps/docking-viewer/index.js +1 -1
  35. package/lib/commonjs/apps/docking-viewer/index.js.map +1 -1
  36. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -2
  37. package/lib/commonjs/apps/viewer/index.d.ts +7 -7
  38. package/lib/commonjs/apps/viewer/index.js +3 -3
  39. package/lib/commonjs/apps/viewer/index.js.map +1 -1
  40. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +1 -1
  41. package/lib/commonjs/cli/chem-comp-dict/create-ions.js.map +1 -1
  42. package/lib/commonjs/cli/chem-comp-dict/create-table.js +3 -3
  43. package/lib/commonjs/cli/chem-comp-dict/create-table.js.map +1 -1
  44. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
  45. package/lib/commonjs/cli/chem-comp-dict/util.js +2 -2
  46. package/lib/commonjs/cli/chem-comp-dict/util.js.map +1 -1
  47. package/lib/commonjs/cli/cif2bcif/converter.js +2 -2
  48. package/lib/commonjs/cli/cif2bcif/converter.js.map +1 -1
  49. package/lib/commonjs/cli/cifschema/index.js +12 -12
  50. package/lib/commonjs/cli/cifschema/index.js.map +1 -1
  51. package/lib/commonjs/cli/cifschema/util/cif-dic.js +19 -19
  52. package/lib/commonjs/cli/cifschema/util/cif-dic.js.map +1 -1
  53. package/lib/commonjs/cli/cifschema/util/generate.js +21 -21
  54. package/lib/commonjs/cli/cifschema/util/generate.js.map +1 -1
  55. package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
  56. package/lib/commonjs/cli/cifschema/util/schema.js.map +1 -1
  57. package/lib/commonjs/cli/lipid-params/index.js +3 -3
  58. package/lib/commonjs/cli/lipid-params/index.js.map +1 -1
  59. package/lib/commonjs/cli/state-docs/index.js +4 -4
  60. package/lib/commonjs/cli/state-docs/index.js.map +1 -1
  61. package/lib/commonjs/cli/state-docs/pd-to-md.js +10 -10
  62. package/lib/commonjs/cli/state-docs/pd-to-md.js.map +1 -1
  63. package/lib/commonjs/cli/structure-info/model.js +18 -18
  64. package/lib/commonjs/cli/structure-info/model.js.map +1 -1
  65. package/lib/commonjs/cli/structure-info/volume.js +1 -1
  66. package/lib/commonjs/cli/structure-info/volume.js.map +1 -1
  67. package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
  68. package/lib/commonjs/examples/basic-wrapper/superposition.js.map +1 -1
  69. package/lib/commonjs/examples/domain-annotation-server/mapping.js +2 -2
  70. package/lib/commonjs/examples/domain-annotation-server/mapping.js.map +1 -1
  71. package/lib/commonjs/examples/domain-annotation-server/server.js +3 -3
  72. package/lib/commonjs/examples/domain-annotation-server/server.js.map +1 -1
  73. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +3 -3
  74. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js.map +1 -1
  75. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +1 -1
  76. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js.map +1 -1
  77. package/lib/commonjs/examples/proteopedia-wrapper/index.js +2 -2
  78. package/lib/commonjs/examples/proteopedia-wrapper/index.js.map +1 -1
  79. package/lib/commonjs/examples/task.js +6 -6
  80. package/lib/commonjs/examples/task.js.map +1 -1
  81. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +2 -2
  82. package/lib/commonjs/extensions/alpha-orbitals/transforms.js.map +1 -1
  83. package/lib/commonjs/extensions/anvil/behavior.d.ts +2 -2
  84. package/lib/commonjs/extensions/anvil/representation.d.ts +5 -5
  85. package/lib/commonjs/extensions/anvil/representation.js +1 -1
  86. package/lib/commonjs/extensions/anvil/representation.js.map +1 -1
  87. package/lib/commonjs/extensions/cellpack/model.js +15 -15
  88. package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
  89. package/lib/commonjs/extensions/cellpack/representation.d.ts +2 -2
  90. package/lib/commonjs/extensions/cellpack/state.js +5 -5
  91. package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
  92. package/lib/commonjs/extensions/cellpack/util.js +4 -4
  93. package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
  94. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -1
  95. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +6 -6
  96. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +7 -7
  97. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js.map +1 -1
  98. package/lib/commonjs/extensions/g3d/data.js +2 -2
  99. package/lib/commonjs/extensions/g3d/data.js.map +1 -1
  100. package/lib/commonjs/extensions/g3d/model.js +2 -2
  101. package/lib/commonjs/extensions/g3d/model.js.map +1 -1
  102. package/lib/commonjs/extensions/geo-export/controls.js +2 -2
  103. package/lib/commonjs/extensions/geo-export/controls.js.map +1 -1
  104. package/lib/commonjs/extensions/geo-export/glb-exporter.js +1 -1
  105. package/lib/commonjs/extensions/geo-export/glb-exporter.js.map +1 -1
  106. package/lib/commonjs/extensions/geo-export/obj-exporter.js +3 -3
  107. package/lib/commonjs/extensions/geo-export/obj-exporter.js.map +1 -1
  108. package/lib/commonjs/extensions/geo-export/stl-exporter.js +1 -1
  109. package/lib/commonjs/extensions/geo-export/stl-exporter.js.map +1 -1
  110. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +5 -5
  111. package/lib/commonjs/extensions/geo-export/usdz-exporter.js.map +1 -1
  112. package/lib/commonjs/extensions/mp4-export/controls.js +1 -1
  113. package/lib/commonjs/extensions/mp4-export/controls.js.map +1 -1
  114. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
  115. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js.map +1 -1
  116. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
  117. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js.map +1 -1
  118. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -6
  119. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +3 -3
  120. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js.map +1 -1
  121. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +1 -1
  122. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js.map +1 -1
  123. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +2 -2
  124. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js.map +1 -1
  125. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
  126. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +7 -7
  127. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js.map +1 -1
  128. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -3
  129. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +11 -11
  130. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js.map +1 -1
  131. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +2 -2
  132. package/lib/commonjs/extensions/rcsb/validation-report/prop.js.map +1 -1
  133. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +10 -10
  134. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
  135. package/lib/commonjs/extensions/rcsb/validation-report/representation.js.map +1 -1
  136. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +8 -8
  137. package/lib/commonjs/mol-canvas3d/canvas3d.js +3 -3
  138. package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
  139. package/lib/commonjs/mol-canvas3d/controls/trackball.d.ts +2 -2
  140. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +3 -3
  141. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
  142. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +1 -1
  143. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js.map +1 -1
  144. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
  145. package/lib/commonjs/mol-canvas3d/passes/wboit.js +1 -1
  146. package/lib/commonjs/mol-canvas3d/passes/wboit.js.map +1 -1
  147. package/lib/commonjs/mol-canvas3d/util.js +1 -1
  148. package/lib/commonjs/mol-canvas3d/util.js.map +1 -1
  149. package/lib/commonjs/mol-data/db/table.js +1 -1
  150. package/lib/commonjs/mol-data/db/table.js.map +1 -1
  151. package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js +1 -1
  152. package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js.map +1 -1
  153. package/lib/commonjs/mol-data/int/impl/ordered-set.d.ts +3 -3
  154. package/lib/commonjs/mol-data/int/impl/sorted-array.d.ts +1 -1
  155. package/lib/commonjs/mol-data/int/impl/sorted-array.js +2 -2
  156. package/lib/commonjs/mol-data/int/impl/sorted-array.js.map +1 -1
  157. package/lib/commonjs/mol-data/int/tuple.js +1 -1
  158. package/lib/commonjs/mol-data/int/tuple.js.map +1 -1
  159. package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js +1 -1
  160. package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js.map +1 -1
  161. package/lib/commonjs/mol-geo/geometry/base.d.ts +3 -3
  162. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
  163. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -1
  164. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +3 -3
  165. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -1
  166. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -1
  167. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +1 -1
  168. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js.map +1 -1
  169. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +3 -3
  170. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -1
  171. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
  172. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js.map +1 -1
  173. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +1 -1
  174. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
  175. package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
  176. package/lib/commonjs/mol-geo/primitive/polyhedron.js.map +1 -1
  177. package/lib/commonjs/mol-gl/_spec/gl.shim.js +4 -4
  178. package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
  179. package/lib/commonjs/mol-gl/compute/grid3d.js +3 -3
  180. package/lib/commonjs/mol-gl/compute/grid3d.js.map +1 -1
  181. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +4 -4
  182. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js.map +1 -1
  183. package/lib/commonjs/mol-gl/renderable/util.js +1 -1
  184. package/lib/commonjs/mol-gl/renderable/util.js.map +1 -1
  185. package/lib/commonjs/mol-gl/renderer.d.ts +2 -2
  186. package/lib/commonjs/mol-gl/scene.js +1 -1
  187. package/lib/commonjs/mol-gl/scene.js.map +1 -1
  188. package/lib/commonjs/mol-gl/shader-code.js +8 -8
  189. package/lib/commonjs/mol-gl/shader-code.js.map +1 -1
  190. package/lib/commonjs/mol-gl/webgl/buffer.d.ts +3 -2
  191. package/lib/commonjs/mol-gl/webgl/buffer.js +5 -5
  192. package/lib/commonjs/mol-gl/webgl/buffer.js.map +1 -1
  193. package/lib/commonjs/mol-gl/webgl/compat.js +3 -3
  194. package/lib/commonjs/mol-gl/webgl/compat.js.map +1 -1
  195. package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
  196. package/lib/commonjs/mol-gl/webgl/context.js +2 -2
  197. package/lib/commonjs/mol-gl/webgl/context.js.map +1 -1
  198. package/lib/commonjs/mol-gl/webgl/framebuffer.js +1 -1
  199. package/lib/commonjs/mol-gl/webgl/framebuffer.js.map +1 -1
  200. package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
  201. package/lib/commonjs/mol-gl/webgl/program.js +14 -12
  202. package/lib/commonjs/mol-gl/webgl/program.js.map +1 -1
  203. package/lib/commonjs/mol-gl/webgl/render-item.d.ts +3 -2
  204. package/lib/commonjs/mol-gl/webgl/render-item.js +6 -3
  205. package/lib/commonjs/mol-gl/webgl/render-item.js.map +1 -1
  206. package/lib/commonjs/mol-gl/webgl/resources.js +1 -1
  207. package/lib/commonjs/mol-gl/webgl/resources.js.map +1 -1
  208. package/lib/commonjs/mol-gl/webgl/shader.js +3 -3
  209. package/lib/commonjs/mol-gl/webgl/shader.js.map +1 -1
  210. package/lib/commonjs/mol-gl/webgl/state.d.ts +4 -1
  211. package/lib/commonjs/mol-gl/webgl/state.js +25 -1
  212. package/lib/commonjs/mol-gl/webgl/state.js.map +1 -1
  213. package/lib/commonjs/mol-gl/webgl/texture.js +2 -2
  214. package/lib/commonjs/mol-gl/webgl/texture.js.map +1 -1
  215. package/lib/commonjs/mol-gl/webgl/uniform.js +2 -2
  216. package/lib/commonjs/mol-gl/webgl/uniform.js.map +1 -1
  217. package/lib/commonjs/mol-io/common/file-handle.js +1 -1
  218. package/lib/commonjs/mol-io/common/file-handle.js.map +1 -1
  219. package/lib/commonjs/mol-io/common/typed-array.js +1 -1
  220. package/lib/commonjs/mol-io/common/typed-array.js.map +1 -1
  221. package/lib/commonjs/mol-io/reader/ccp4/parser.js +1 -1
  222. package/lib/commonjs/mol-io/reader/ccp4/parser.js.map +1 -1
  223. package/lib/commonjs/mol-io/reader/cif/binary/parser.js +1 -1
  224. package/lib/commonjs/mol-io/reader/cif/binary/parser.js.map +1 -1
  225. package/lib/commonjs/mol-io/reader/cif/data-model.js +7 -7
  226. package/lib/commonjs/mol-io/reader/cif/data-model.js.map +1 -1
  227. package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +2 -2
  228. package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +2 -2
  229. package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
  230. package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +14 -14
  231. package/lib/commonjs/mol-io/reader/cif/schema.js +7 -7
  232. package/lib/commonjs/mol-io/reader/cif/schema.js.map +1 -1
  233. package/lib/commonjs/mol-io/reader/cif/text/parser.js +2 -2
  234. package/lib/commonjs/mol-io/reader/cif/text/parser.js.map +1 -1
  235. package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
  236. package/lib/commonjs/mol-io/reader/dcd/parser.js.map +1 -1
  237. package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
  238. package/lib/commonjs/mol-io/reader/ply/schema.js +1 -1
  239. package/lib/commonjs/mol-io/reader/ply/schema.js.map +1 -1
  240. package/lib/commonjs/mol-io/reader/result.js +1 -1
  241. package/lib/commonjs/mol-io/reader/result.js.map +1 -1
  242. package/lib/commonjs/mol-io/writer/cif/encoder/text.js +3 -3
  243. package/lib/commonjs/mol-io/writer/cif/encoder/text.js.map +1 -1
  244. package/lib/commonjs/mol-io/writer/cif/encoder.js +5 -5
  245. package/lib/commonjs/mol-io/writer/cif/encoder.js.map +1 -1
  246. package/lib/commonjs/mol-io/writer/mol/encoder.js +4 -4
  247. package/lib/commonjs/mol-io/writer/mol/encoder.js.map +1 -1
  248. package/lib/commonjs/mol-io/writer/mol2/encoder.js +6 -6
  249. package/lib/commonjs/mol-io/writer/mol2/encoder.js.map +1 -1
  250. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +1 -1
  251. package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js.map +1 -1
  252. package/lib/commonjs/mol-math/geometry/spacegroup/construction.js +8 -8
  253. package/lib/commonjs/mol-math/geometry/spacegroup/construction.js.map +1 -1
  254. package/lib/commonjs/mol-math/geometry/spacegroup/tables.js +1 -1
  255. package/lib/commonjs/mol-math/geometry/spacegroup/tables.js.map +1 -1
  256. package/lib/commonjs/mol-math/geometry/symmetry-operator.js +4 -4
  257. package/lib/commonjs/mol-math/geometry/symmetry-operator.js.map +1 -1
  258. package/lib/commonjs/mol-math/graph/inter-unit-graph.js +2 -2
  259. package/lib/commonjs/mol-math/graph/inter-unit-graph.js.map +1 -1
  260. package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +1 -1
  261. package/lib/commonjs/mol-math/linear-algebra/3d/quat.js.map +1 -1
  262. package/lib/commonjs/mol-math/linear-algebra/3d/vec2.js +1 -1
  263. package/lib/commonjs/mol-math/linear-algebra/3d/vec2.js.map +1 -1
  264. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +1 -1
  265. package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map +1 -1
  266. package/lib/commonjs/mol-math/linear-algebra/3d/vec4.js +1 -1
  267. package/lib/commonjs/mol-math/linear-algebra/3d/vec4.js.map +1 -1
  268. package/lib/commonjs/mol-model/loci.d.ts +20 -20
  269. package/lib/commonjs/mol-model/sequence/sequence.js +2 -2
  270. package/lib/commonjs/mol-model/sequence/sequence.js.map +1 -1
  271. package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
  272. package/lib/commonjs/mol-model/structure/export/categories/atom_site.js +2 -2
  273. package/lib/commonjs/mol-model/structure/export/categories/atom_site.js.map +1 -1
  274. package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js +1 -1
  275. package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js.map +1 -1
  276. package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +1 -1
  277. package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js.map +1 -1
  278. package/lib/commonjs/mol-model/structure/export/mmcif.js +1 -1
  279. package/lib/commonjs/mol-model/structure/export/mmcif.js.map +1 -1
  280. package/lib/commonjs/mol-model/structure/model/properties/atomic/bonds.js +2 -2
  281. package/lib/commonjs/mol-model/structure/model/properties/atomic/bonds.js.map +1 -1
  282. package/lib/commonjs/mol-model/structure/model/properties/symmetry.js +3 -3
  283. package/lib/commonjs/mol-model/structure/model/properties/symmetry.js.map +1 -1
  284. package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +2 -2
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