npm - molstar - Versions diffs - 2.3.7 → 2.3.8 - Mend

molstar 2.3.7 → 2.3.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1415) hide show

package/lib/extensions/cellpack/state.js CHANGED Viewed

@@ -134,7 +134,7 @@ var ParseCellPack = PluginStateTransform.BuiltIn({
                         return [3 /*break*/, 4];
                     case 2:
                         if (!(options === null || options === void 0 ? void 0 : options.resultfile)) return [3 /*break*/, 4];
-                        url = params.baseUrl + "/results/" + options.resultfile;
+                        url = "".concat(params.baseUrl, "/results/").concat(options.resultfile);
                         return [4 /*yield*/, plugin.runTask(plugin.managers.asset.resolve(Asset.getUrlAsset(plugin.managers.asset, url), 'binary', true))];
                     case 3:
                         resultsAsset = _b.sent();
@@ -189,7 +189,7 @@ var ParseCellPack = PluginStateTransform.BuiltIn({
                                     // console.log("cid ",cid,ctype,prev_cid,prev_ctype);//165,148
                                     if (prev_ctype !== ctype) {
                                         pid_1 = cell.mapping_ids[-prev_ctype - 1];
-                                        cname_1 = "curve" + counter;
+                                        cname_1 = "curve".concat(counter);
                                         packings[pid_1[0]].ingredients[pid_1[1]].nbCurve = counter + 1;
                                         packings[pid_1[0]].ingredients[pid_1[1]][cname_1] = ctr_points;
                                         ctr_points = [];
@@ -198,7 +198,7 @@ var ParseCellPack = PluginStateTransform.BuiltIn({
                                     else if (prev_cid !== cid) {
                                         ctr_points = [];
                                         pid_2 = cell.mapping_ids[-prev_ctype - 1];
-                                        cname_2 = "curve" + counter;
+                                        cname_2 = "curve".concat(counter);
                                         packings[pid_2[0]].ingredients[pid_2[1]][cname_2] = ctr_points;
                                         counter += 1;
                                     }
@@ -207,7 +207,7 @@ var ParseCellPack = PluginStateTransform.BuiltIn({
                                     prev_cid = cid;
                                 }
                                 pid = cell.mapping_ids[-prev_ctype - 1];
-                                cname = "curve" + counter;
+                                cname = "curve".concat(counter);
                                 packings[pid[0]].ingredients[pid[1]].nbCurve = counter + 1;
                                 packings[pid[0]].ingredients[pid[1]][cname] = ctr_points;
                             }
@@ -345,7 +345,7 @@ var StructureFromAssemblies = PluginStateTransform.BuiltIn({
                             Model.TrajectoryInfo.set(structure.models[i], { size: il, index: i });
                         }
                         _e.label = 5;
-                    case 5: return [2 /*return*/, new PSO.Molecule.Structure(structure, { label: a.label, description: "" + a.description })];
+                    case 5: return [2 /*return*/, new PSO.Molecule.Structure(structure, { label: a.label, description: "".concat(a.description) })];
                 }
             });
         }); });

package/lib/extensions/cellpack/state.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/extensions/cellpack/util.js CHANGED Viewed

@@ -82,7 +82,7 @@ export function getFromPdb(plugin, pdbId, assetManager) {
         var _a, cif, asset;
         return __generator(this, function (_b) {
             switch (_b.label) {
-                case 0: return [4 /*yield*/, downloadCif(plugin, "https://models.rcsb.org/" + pdbId + ".bcif", true, assetManager)];
+                case 0: return [4 /*yield*/, downloadCif(plugin, "https://models.rcsb.org/".concat(pdbId, ".bcif"), true, assetManager)];
                 case 1:
                     _a = _b.sent(), cif = _a.cif, asset = _a.asset;
                     return [2 /*return*/, { mmcif: cif.blocks[0], asset: asset }];
@@ -96,7 +96,7 @@ export function getFromOPM(plugin, pdbId, assetManager) {
         var _a;
         return __generator(this, function (_b) {
             switch (_b.label) {
-                case 0: return [4 /*yield*/, plugin.runTask(assetManager.resolve(Asset.getUrlAsset(assetManager, "https://opm-assets.storage.googleapis.com/pdb/" + pdbId.toLowerCase() + ".pdb"), 'string'))];
+                case 0: return [4 /*yield*/, plugin.runTask(assetManager.resolve(Asset.getUrlAsset(assetManager, "https://opm-assets.storage.googleapis.com/pdb/".concat(pdbId.toLowerCase(), ".pdb")), 'string'))];
                 case 1:
                     asset = _b.sent();
                     _a = {};
@@ -114,13 +114,13 @@ export function getFromCellPackDB(plugin, id, baseUrl, assetManager) {
                 case 0:
                     if (!(id.toLowerCase().endsWith('.cif') || id.toLowerCase().endsWith('.bcif'))) return [3 /*break*/, 2];
                     isBinary = id.toLowerCase().endsWith('.bcif');
-                    return [4 /*yield*/, downloadCif(plugin, baseUrl + "/other/" + id, isBinary, assetManager)];
+                    return [4 /*yield*/, downloadCif(plugin, "".concat(baseUrl, "/other/").concat(id), isBinary, assetManager)];
                 case 1:
                     _a = _b.sent(), cif = _a.cif, asset = _a.asset;
                     return [2 /*return*/, { mmcif: cif.blocks[0], asset: asset }];
                 case 2:
                     name_1 = id.endsWith('.pdb') ? id.substring(0, id.length - 4) : id;
-                    return [4 /*yield*/, downloadPDB(plugin, baseUrl + "/other/" + name_1 + ".pdb", name_1, assetManager)];
+                    return [4 /*yield*/, downloadPDB(plugin, "".concat(baseUrl, "/other/").concat(name_1, ".pdb"), name_1, assetManager)];
                 case 3: return [2 /*return*/, _b.sent()];
             }
         });

package/lib/extensions/cellpack/util.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/extensions/dnatco/confal-pyramids/representation.d.ts CHANGED Viewed

@@ -10,7 +10,7 @@ import { StructureRepresentation, StructureRepresentationProvider } from '../../
 import { ParamDefinition as PD } from '../../../mol-util/param-definition';
 import { ThemeRegistryContext } from '../../../mol-theme/theme';
 export declare const ConfalPyramidsParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -22,7 +22,7 @@ export declare const ConfalPyramidsParams: {
 };
 export declare type ConfalPyramidsParams = typeof ConfalPyramidsParams;
 export declare function getConfalPyramidsParams(ctx: ThemeRegistryContext, structure: Structure): {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -35,7 +35,7 @@ export declare function getConfalPyramidsParams(ctx: ThemeRegistryContext, struc
 export declare type ConfalPyramidsRepresentation = StructureRepresentation<ConfalPyramidsParams>;
 export declare function ConfalPyramidsRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, ConfalPyramidsParams>): ConfalPyramidsRepresentation;
 export declare const ConfalPyramidsRepresentationProvider: StructureRepresentationProvider<{
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;

package/lib/extensions/dnatco/confal-pyramids/util.js CHANGED Viewed

@@ -65,12 +65,12 @@ export var ConfalPyramidsUtil;
         Utility.prototype.stepToName = function (entry_id, modelNum, locFirst, locSecond, fakeAltId_1, fakeAltId_2) {
             var first = residueInfoFromLocation(locFirst);
             var second = residueInfoFromLocation(locSecond);
-            var model_id = this.hasMultipleModels ? "-m" + modelNum : '';
-            var alt_id_1 = fakeAltId_1 !== '' ? "." + fakeAltId_1 : (first.alt_id.length ? "." + first.alt_id : '');
-            var alt_id_2 = fakeAltId_2 !== '' ? "." + fakeAltId_2 : (second.alt_id.length ? "." + second.alt_id : '');
-            var ins_code_1 = first.ins_code.length ? "." + first.ins_code : '';
-            var ins_code_2 = second.ins_code.length ? "." + second.ins_code : '';
-            return "" + entry_id + model_id + "_" + first.auth_asym_id + "_" + first.comp_id + alt_id_1 + "_" + first.auth_seq_id + ins_code_1 + "_" + second.comp_id + alt_id_2 + "_" + second.auth_seq_id + ins_code_2;
+            var model_id = this.hasMultipleModels ? "-m".concat(modelNum) : '';
+            var alt_id_1 = fakeAltId_1 !== '' ? ".".concat(fakeAltId_1) : (first.alt_id.length ? ".".concat(first.alt_id) : '');
+            var alt_id_2 = fakeAltId_2 !== '' ? ".".concat(fakeAltId_2) : (second.alt_id.length ? ".".concat(second.alt_id) : '');
+            var ins_code_1 = first.ins_code.length ? ".".concat(first.ins_code) : '';
+            var ins_code_2 = second.ins_code.length ? ".".concat(second.ins_code) : '';
+            return "".concat(entry_id).concat(model_id, "_").concat(first.auth_asym_id, "_").concat(first.comp_id).concat(alt_id_1, "_").concat(first.auth_seq_id).concat(ins_code_1, "_").concat(second.comp_id).concat(alt_id_2, "_").concat(second.auth_seq_id).concat(ins_code_2);
         };
         return Utility;
     }());
@@ -97,7 +97,7 @@ export var ConfalPyramidsUtil;
                     indices.push(eI);
             }
             if (indices.length === 0)
-                throw new Error("Element " + name + " not found on residue " + residue.index);
+                throw new Error("Element ".concat(name, " not found on residue ").concat(residue.index));
             return indices;
         };
         UnitWalker.prototype.getAtomPositions = function (indices) {

package/lib/extensions/dnatco/confal-pyramids/util.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/extensions/g3d/data.js CHANGED Viewed

@@ -34,7 +34,7 @@ export function getG3dDataBlock(ctx, header, urlOrData, resolution) {
             switch (_a.label) {
                 case 0:
                     if (!header.offsets[resolution])
-                        throw new Error("Resolution " + resolution + " not available.");
+                        throw new Error("Resolution ".concat(resolution, " not available."));
                     return [4 /*yield*/, getRawData(ctx, urlOrData, header.offsets[resolution])];
                 case 1:
                     data = _a.sent();
@@ -56,7 +56,7 @@ function getRawData(ctx, urlOrData, range) {
             switch (_a.label) {
                 case 0:
                     if (!(typeof urlOrData === 'string')) return [3 /*break*/, 2];
-                    return [4 /*yield*/, ctx.runTask(ctx.fetch({ url: urlOrData, headers: [['Range', "bytes=" + range.offset + "-" + (range.offset + range.size - 1)]], type: 'binary' }))];
+                    return [4 /*yield*/, ctx.runTask(ctx.fetch({ url: urlOrData, headers: [['Range', "bytes=".concat(range.offset, "-").concat(range.offset + range.size - 1)]], type: 'binary' }))];
                 case 1: return [2 /*return*/, _a.sent()];
                 case 2: return [2 /*return*/, urlOrData.slice(range.offset, range.offset + range.size)];
             }

package/lib/extensions/g3d/data.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/extensions/g3d/model.js CHANGED Viewed

@@ -39,7 +39,7 @@ function getColumns(block) {
     var o = 0;
     objectForEach(data, function (hs, h) {
         objectForEach(hs, function (chs, ch) {
-            var entity_id = ch + "-" + h;
+            var entity_id = "".concat(ch, "-").concat(h);
             var l = chs.start.length;
             if (l === 0)
                 return;
@@ -202,7 +202,7 @@ export var G3dLabelProvider = {
             return;
         var eI = first.unit.elements[OrderedSet.getAt(first.indices, 0)];
         var seqId = first.unit.model.coarseHierarchy.spheres.seq_id_begin.value(eI);
-        return "<b>Start:</b> " + info.start[seqId] + " <small>| resolution " + info.resolution + "<small>";
+        return "<b>Start:</b> ".concat(info.start[seqId], " <small>| resolution ").concat(info.resolution, "<small>");
     }
 };
 //# sourceMappingURL=model.js.map

package/lib/extensions/g3d/model.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/extensions/geo-export/controls.js CHANGED Viewed

@@ -39,7 +39,7 @@ var GeometryControls = /** @class */ (function (_super) {
         var uniqueIds = new Set();
         models.forEach(function (m) { return uniqueIds.add(m.entryId.toUpperCase()); });
         var idString = SetUtils.toArray(uniqueIds).join('-');
-        return "" + (idString || 'molstar-model');
+        return "".concat(idString || 'molstar-model');
     };
     GeometryControls.prototype.exportGeometry = function () {
         var _this = this;
@@ -75,7 +75,7 @@ var GeometryControls = /** @class */ (function (_super) {
                         _e.label = 1;
                     case 1:
                         if (!(i < il)) return [3 /*break*/, 5];
-                        return [4 /*yield*/, ctx.update({ message: "Exporting object " + i + "/" + il })];
+                        return [4 /*yield*/, ctx.update({ message: "Exporting object ".concat(i, "/").concat(il) })];
                     case 2:
                         _e.sent();
                         return [4 /*yield*/, renderObjectExporter.add(renderObjects[i], (_d = this.plugin.canvas3d) === null || _d === void 0 ? void 0 : _d.webgl, ctx)];

package/lib/extensions/geo-export/controls.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/extensions/geo-export/glb-exporter.js CHANGED Viewed

@@ -218,7 +218,7 @@ var GlbExporter = /** @class */ (function (_super) {
                 gltf = {
                     asset: {
                         version: '2.0',
-                        generator: "Mol* " + PLUGIN_VERSION
+                        generator: "Mol* ".concat(PLUGIN_VERSION)
                     },
                     scenes: [{
                             nodes: fillSerial(new Array(this.nodes.length))

package/lib/extensions/geo-export/glb-exporter.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/extensions/geo-export/obj-exporter.js CHANGED Viewed

@@ -25,7 +25,7 @@ var ObjExporter = /** @class */ (function (_super) {
         _this.mtl = StringBuilder.create();
         _this.vertexOffset = 0;
         _this.materialSet = new Set();
-        StringBuilder.writeSafe(_this.obj, "mtllib " + filename + ".mtl\n");
+        StringBuilder.writeSafe(_this.obj, "mtllib ".concat(filename, ".mtl\n"));
         var tmpV = Vec3();
         Vec3.add(tmpV, boundingBox.min, boundingBox.max);
         Vec3.scale(tmpV, tmpV, -0.5);
@@ -38,13 +38,13 @@ var ObjExporter = /** @class */ (function (_super) {
         this.currentColor = color;
         this.currentAlpha = alpha;
         var material = Color.toHexString(color) + alpha;
-        StringBuilder.writeSafe(this.obj, "usemtl " + material);
+        StringBuilder.writeSafe(this.obj, "usemtl ".concat(material));
         StringBuilder.newline(this.obj);
         if (!this.materialSet.has(material)) {
             this.materialSet.add(material);
             var _a = Color.toRgbNormalized(color), r = _a[0], g = _a[1], b = _a[2];
             var mtl = this.mtl;
-            StringBuilder.writeSafe(mtl, "newmtl " + material + "\n");
+            StringBuilder.writeSafe(mtl, "newmtl ".concat(material, "\n"));
             StringBuilder.writeSafe(mtl, 'illum 2\n'); // illumination model
             StringBuilder.writeSafe(mtl, 'Ns 163\n'); // specular exponent
             StringBuilder.writeSafe(mtl, 'Ni 0.001\n'); // optical density a.k.a. index of refraction

package/lib/extensions/geo-export/obj-exporter.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ 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package/lib/extensions/geo-export/stl-exporter.js CHANGED Viewed

@@ -96,7 +96,7 @@ var StlExporter = /** @class */ (function (_super) {
             var stl, dataView, byteOffset, _i, _a, buffer;
             return __generator(this, function (_b) {
                 stl = new Uint8Array(84 + 50 * this.triangleCount);
-                asciiWrite(stl, "Exported from Mol* " + PLUGIN_VERSION);
+                asciiWrite(stl, "Exported from Mol* ".concat(PLUGIN_VERSION));
                 dataView = new DataView(stl.buffer);
                 dataView.setUint32(80, this.triangleCount, true);
                 byteOffset = 84;

package/lib/extensions/geo-export/stl-exporter.js.map CHANGED Viewed

	@@ -1 +1 @@
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