molstar 2.3.7 → 2.3.8
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/viewer/molstar.css +1 -2
- package/build/viewer/molstar.js +1 -1
- package/lib/apps/docking-viewer/index.js +1 -1
- package/lib/apps/docking-viewer/index.js.map +1 -1
- package/lib/apps/viewer/index.d.ts +1 -1
- package/lib/apps/viewer/index.js +3 -3
- package/lib/apps/viewer/index.js.map +1 -1
- package/lib/cli/chem-comp-dict/create-ions.js +1 -1
- package/lib/cli/chem-comp-dict/create-ions.js.map +1 -1
- package/lib/cli/chem-comp-dict/create-table.js +3 -3
- package/lib/cli/chem-comp-dict/create-table.js.map +1 -1
- package/lib/cli/chem-comp-dict/util.js +2 -2
- package/lib/cli/chem-comp-dict/util.js.map +1 -1
- package/lib/cli/cif2bcif/converter.js +2 -2
- package/lib/cli/cif2bcif/converter.js.map +1 -1
- package/lib/cli/cifschema/index.js +12 -12
- package/lib/cli/cifschema/index.js.map +1 -1
- package/lib/cli/cifschema/util/cif-dic.js +19 -19
- package/lib/cli/cifschema/util/cif-dic.js.map +1 -1
- package/lib/cli/cifschema/util/generate.js +21 -21
- package/lib/cli/cifschema/util/generate.js.map +1 -1
- package/lib/cli/cifschema/util/schema.js +1 -1
- package/lib/cli/cifschema/util/schema.js.map +1 -1
- package/lib/cli/lipid-params/index.js +3 -3
- package/lib/cli/lipid-params/index.js.map +1 -1
- package/lib/cli/state-docs/index.js +4 -4
- package/lib/cli/state-docs/index.js.map +1 -1
- package/lib/cli/state-docs/pd-to-md.js +10 -10
- package/lib/cli/state-docs/pd-to-md.js.map +1 -1
- package/lib/cli/structure-info/model.js +18 -18
- package/lib/cli/structure-info/model.js.map +1 -1
- package/lib/cli/structure-info/volume.js +1 -1
- package/lib/cli/structure-info/volume.js.map +1 -1
- package/lib/commonjs/apps/docking-viewer/index.js +1 -1
- package/lib/commonjs/apps/docking-viewer/index.js.map +1 -1
- package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -2
- package/lib/commonjs/apps/viewer/index.d.ts +7 -7
- package/lib/commonjs/apps/viewer/index.js +3 -3
- package/lib/commonjs/apps/viewer/index.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-ions.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/create-table.js +3 -3
- package/lib/commonjs/cli/chem-comp-dict/create-table.js.map +1 -1
- package/lib/commonjs/cli/chem-comp-dict/util.d.ts +4 -4
- package/lib/commonjs/cli/chem-comp-dict/util.js +2 -2
- package/lib/commonjs/cli/chem-comp-dict/util.js.map +1 -1
- package/lib/commonjs/cli/cif2bcif/converter.js +2 -2
- package/lib/commonjs/cli/cif2bcif/converter.js.map +1 -1
- package/lib/commonjs/cli/cifschema/index.js +12 -12
- package/lib/commonjs/cli/cifschema/index.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/cif-dic.js +19 -19
- package/lib/commonjs/cli/cifschema/util/cif-dic.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/generate.js +21 -21
- package/lib/commonjs/cli/cifschema/util/generate.js.map +1 -1
- package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
- package/lib/commonjs/cli/cifschema/util/schema.js.map +1 -1
- package/lib/commonjs/cli/lipid-params/index.js +3 -3
- package/lib/commonjs/cli/lipid-params/index.js.map +1 -1
- package/lib/commonjs/cli/state-docs/index.js +4 -4
- package/lib/commonjs/cli/state-docs/index.js.map +1 -1
- package/lib/commonjs/cli/state-docs/pd-to-md.js +10 -10
- package/lib/commonjs/cli/state-docs/pd-to-md.js.map +1 -1
- package/lib/commonjs/cli/structure-info/model.js +18 -18
- package/lib/commonjs/cli/structure-info/model.js.map +1 -1
- package/lib/commonjs/cli/structure-info/volume.js +1 -1
- package/lib/commonjs/cli/structure-info/volume.js.map +1 -1
- package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
- package/lib/commonjs/examples/basic-wrapper/superposition.js.map +1 -1
- package/lib/commonjs/examples/domain-annotation-server/mapping.js +2 -2
- package/lib/commonjs/examples/domain-annotation-server/mapping.js.map +1 -1
- package/lib/commonjs/examples/domain-annotation-server/server.js +3 -3
- package/lib/commonjs/examples/domain-annotation-server/server.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +3 -3
- package/lib/commonjs/examples/proteopedia-wrapper/annotation.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/helpers.js.map +1 -1
- package/lib/commonjs/examples/proteopedia-wrapper/index.js +2 -2
- package/lib/commonjs/examples/proteopedia-wrapper/index.js.map +1 -1
- package/lib/commonjs/examples/task.js +6 -6
- package/lib/commonjs/examples/task.js.map +1 -1
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js +2 -2
- package/lib/commonjs/extensions/alpha-orbitals/transforms.js.map +1 -1
- package/lib/commonjs/extensions/anvil/behavior.d.ts +2 -2
- package/lib/commonjs/extensions/anvil/representation.d.ts +5 -5
- package/lib/commonjs/extensions/anvil/representation.js +1 -1
- package/lib/commonjs/extensions/anvil/representation.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/model.js +15 -15
- package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/representation.d.ts +2 -2
- package/lib/commonjs/extensions/cellpack/state.js +5 -5
- package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
- package/lib/commonjs/extensions/cellpack/util.js +4 -4
- package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -1
- package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +6 -6
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +7 -7
- package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js.map +1 -1
- package/lib/commonjs/extensions/g3d/data.js +2 -2
- package/lib/commonjs/extensions/g3d/data.js.map +1 -1
- package/lib/commonjs/extensions/g3d/model.js +2 -2
- package/lib/commonjs/extensions/g3d/model.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/controls.js +2 -2
- package/lib/commonjs/extensions/geo-export/controls.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/glb-exporter.js +1 -1
- package/lib/commonjs/extensions/geo-export/glb-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/obj-exporter.js +3 -3
- package/lib/commonjs/extensions/geo-export/obj-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/stl-exporter.js +1 -1
- package/lib/commonjs/extensions/geo-export/stl-exporter.js.map +1 -1
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js +5 -5
- package/lib/commonjs/extensions/geo-export/usdz-exporter.js.map +1 -1
- package/lib/commonjs/extensions/mp4-export/controls.js +1 -1
- package/lib/commonjs/extensions/mp4-export/controls.js.map +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js.map +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
- package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -6
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +3 -3
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +2 -2
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +7 -7
- package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -3
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +11 -11
- package/lib/commonjs/extensions/rcsb/validation-report/behavior.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/prop.js.map +1 -1
- package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +10 -10
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js +2 -2
- package/lib/commonjs/extensions/rcsb/validation-report/representation.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +8 -8
- package/lib/commonjs/mol-canvas3d/canvas3d.js +3 -3
- package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/controls/trackball.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +3 -3
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +1 -1
- package/lib/commonjs/mol-canvas3d/helper/handle-helper.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
- package/lib/commonjs/mol-canvas3d/passes/wboit.js +1 -1
- package/lib/commonjs/mol-canvas3d/passes/wboit.js.map +1 -1
- package/lib/commonjs/mol-canvas3d/util.js +1 -1
- package/lib/commonjs/mol-canvas3d/util.js.map +1 -1
- package/lib/commonjs/mol-data/db/table.js +1 -1
- package/lib/commonjs/mol-data/db/table.js.map +1 -1
- package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js +1 -1
- package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js.map +1 -1
- package/lib/commonjs/mol-data/int/impl/ordered-set.d.ts +3 -3
- package/lib/commonjs/mol-data/int/impl/sorted-array.d.ts +1 -1
- package/lib/commonjs/mol-data/int/impl/sorted-array.js +2 -2
- package/lib/commonjs/mol-data/int/impl/sorted-array.js.map +1 -1
- package/lib/commonjs/mol-data/int/tuple.js +1 -1
- package/lib/commonjs/mol-data/int/tuple.js.map +1 -1
- package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js +1 -1
- package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/base.d.ts +3 -3
- package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/image/image.d.ts +3 -3
- package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +1 -1
- package/lib/commonjs/mol-geo/geometry/mesh/mesh.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/points/points.d.ts +3 -3
- package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
- package/lib/commonjs/mol-geo/geometry/text/font-atlas.js.map +1 -1
- package/lib/commonjs/mol-geo/geometry/text/text.d.ts +1 -1
- package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
- package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
- package/lib/commonjs/mol-geo/primitive/polyhedron.js.map +1 -1
- package/lib/commonjs/mol-gl/_spec/gl.shim.js +4 -4
- package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
- package/lib/commonjs/mol-gl/compute/grid3d.js +3 -3
- package/lib/commonjs/mol-gl/compute/grid3d.js.map +1 -1
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +4 -4
- package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js.map +1 -1
- package/lib/commonjs/mol-gl/renderable/util.js +1 -1
- package/lib/commonjs/mol-gl/renderable/util.js.map +1 -1
- package/lib/commonjs/mol-gl/renderer.d.ts +2 -2
- package/lib/commonjs/mol-gl/scene.js +1 -1
- package/lib/commonjs/mol-gl/scene.js.map +1 -1
- package/lib/commonjs/mol-gl/shader-code.js +8 -8
- package/lib/commonjs/mol-gl/shader-code.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/buffer.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/buffer.js +5 -5
- package/lib/commonjs/mol-gl/webgl/buffer.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/compat.js +3 -3
- package/lib/commonjs/mol-gl/webgl/compat.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/context.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/context.js +2 -2
- package/lib/commonjs/mol-gl/webgl/context.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/framebuffer.js +1 -1
- package/lib/commonjs/mol-gl/webgl/framebuffer.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/program.d.ts +1 -1
- package/lib/commonjs/mol-gl/webgl/program.js +14 -12
- package/lib/commonjs/mol-gl/webgl/program.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/render-item.d.ts +3 -2
- package/lib/commonjs/mol-gl/webgl/render-item.js +6 -3
- package/lib/commonjs/mol-gl/webgl/render-item.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/resources.js +1 -1
- package/lib/commonjs/mol-gl/webgl/resources.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/shader.js +3 -3
- package/lib/commonjs/mol-gl/webgl/shader.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/state.d.ts +4 -1
- package/lib/commonjs/mol-gl/webgl/state.js +25 -1
- package/lib/commonjs/mol-gl/webgl/state.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/texture.js +2 -2
- package/lib/commonjs/mol-gl/webgl/texture.js.map +1 -1
- package/lib/commonjs/mol-gl/webgl/uniform.js +2 -2
- package/lib/commonjs/mol-gl/webgl/uniform.js.map +1 -1
- package/lib/commonjs/mol-io/common/file-handle.js +1 -1
- package/lib/commonjs/mol-io/common/file-handle.js.map +1 -1
- package/lib/commonjs/mol-io/common/typed-array.js +1 -1
- package/lib/commonjs/mol-io/common/typed-array.js.map +1 -1
- package/lib/commonjs/mol-io/reader/ccp4/parser.js +1 -1
- package/lib/commonjs/mol-io/reader/ccp4/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/binary/parser.js +1 -1
- package/lib/commonjs/mol-io/reader/cif/binary/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/data-model.js +7 -7
- package/lib/commonjs/mol-io/reader/cif/data-model.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/schema/ccd.d.ts +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/density-server.d.ts +2 -2
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif-extras.d.ts +3 -3
- package/lib/commonjs/mol-io/reader/cif/schema/mmcif.d.ts +14 -14
- package/lib/commonjs/mol-io/reader/cif/schema.js +7 -7
- package/lib/commonjs/mol-io/reader/cif/schema.js.map +1 -1
- package/lib/commonjs/mol-io/reader/cif/text/parser.js +2 -2
- package/lib/commonjs/mol-io/reader/cif/text/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/dcd/parser.js +2 -2
- package/lib/commonjs/mol-io/reader/dcd/parser.js.map +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.d.ts +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.js +1 -1
- package/lib/commonjs/mol-io/reader/ply/schema.js.map +1 -1
- package/lib/commonjs/mol-io/reader/result.js +1 -1
- package/lib/commonjs/mol-io/reader/result.js.map +1 -1
- package/lib/commonjs/mol-io/writer/cif/encoder/text.js +3 -3
- package/lib/commonjs/mol-io/writer/cif/encoder/text.js.map +1 -1
- package/lib/commonjs/mol-io/writer/cif/encoder.js +5 -5
- package/lib/commonjs/mol-io/writer/cif/encoder.js.map +1 -1
- package/lib/commonjs/mol-io/writer/mol/encoder.js +4 -4
- package/lib/commonjs/mol-io/writer/mol/encoder.js.map +1 -1
- package/lib/commonjs/mol-io/writer/mol2/encoder.js +6 -6
- package/lib/commonjs/mol-io/writer/mol2/encoder.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js +1 -1
- package/lib/commonjs/mol-math/geometry/gaussian-density/gpu.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/construction.js +8 -8
- package/lib/commonjs/mol-math/geometry/spacegroup/construction.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/tables.js +1 -1
- package/lib/commonjs/mol-math/geometry/spacegroup/tables.js.map +1 -1
- package/lib/commonjs/mol-math/geometry/symmetry-operator.js +4 -4
- package/lib/commonjs/mol-math/geometry/symmetry-operator.js.map +1 -1
- package/lib/commonjs/mol-math/graph/inter-unit-graph.js +2 -2
- package/lib/commonjs/mol-math/graph/inter-unit-graph.js.map +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.js +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/quat.js.map +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec2.js +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec2.js.map +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec3.js.map +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec4.js +1 -1
- package/lib/commonjs/mol-math/linear-algebra/3d/vec4.js.map +1 -1
- package/lib/commonjs/mol-model/loci.d.ts +20 -20
- package/lib/commonjs/mol-model/sequence/sequence.js +2 -2
- package/lib/commonjs/mol-model/sequence/sequence.js.map +1 -1
- package/lib/commonjs/mol-model/shape/shape.d.ts +1 -1
- package/lib/commonjs/mol-model/structure/export/categories/atom_site.js +2 -2
- package/lib/commonjs/mol-model/structure/export/categories/atom_site.js.map +1 -1
- package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js +1 -1
- package/lib/commonjs/mol-model/structure/export/categories/atom_site_operator_mapping.js.map +1 -1
- package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js +1 -1
- package/lib/commonjs/mol-model/structure/export/categories/secondary-structure.js.map +1 -1
- package/lib/commonjs/mol-model/structure/export/mmcif.js +1 -1
- package/lib/commonjs/mol-model/structure/export/mmcif.js.map +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/atomic/bonds.js +2 -2
- package/lib/commonjs/mol-model/structure/model/properties/atomic/bonds.js.map +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/symmetry.js +3 -3
- package/lib/commonjs/mol-model/structure/model/properties/symmetry.js.map +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js +2 -2
- package/lib/commonjs/mol-model/structure/model/properties/utils/atomic-index.js.map +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/coarse-keys.js +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/coarse-keys.js.map +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/residue-set.js +1 -1
- package/lib/commonjs/mol-model/structure/model/properties/utils/residue-set.js.map +1 -1
- package/lib/commonjs/mol-model/structure/query/context.js +1 -1
- package/lib/commonjs/mol-model/structure/query/context.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/compute.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/carbohydrates/compute.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/element/loci.js +2 -2
- package/lib/commonjs/mol-model/structure/structure/element/loci.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/element/util.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/element/util.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/properties.d.ts +2 -2
- package/lib/commonjs/mol-model/structure/structure/properties.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/properties.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/structure.js +1 -1
- package/lib/commonjs/mol-model/structure/structure/structure.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/symmetry.js +3 -3
- package/lib/commonjs/mol-model/structure/structure/symmetry.js.map +1 -1
- package/lib/commonjs/mol-model/structure/structure/unit.d.ts +4 -4
- package/lib/commonjs/mol-model/structure/structure/util/superposition-db-mapping.js +1 -1
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GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,WAAW,EAAE,CAAC,CAAC;AACtC,CAAC;AAED,SAAS,cAAc,CAAC,GAAuB;IAC3C,MAAM,IAAI,KAAK,CAAC,qBAAc,GAAG,sCAAmC,CAAC,CAAC;AAC1E,CAAC;AAED,SAAS,gBAAgB,CAAC,GAAuB;IAC7C,MAAM,IAAI,KAAK,CAAC,kBAAW,GAAG,mCAAgC,CAAC,CAAC;AACpE,CAAC;AAED,SAAS,aAAa,CAAC,KAA2B,EAAE,GAAuB;IACvE,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE;QACjB,MAAM,IAAI,KAAK,CAAC,gBAAS,GAAG,kCAA+B,CAAC,CAAC;KAChE;AACL,CAAC"}
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@@ -13,14 +13,14 @@ var Progress;
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13
13
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var p = root.progress;
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14
14
|
if (!root.children.length) {
|
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15
15
|
if (p.isIndeterminate)
|
|
16
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-
return ""
|
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17
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-
return ""
|
|
16
|
+
return "".concat(prefix).concat(p.taskName, ": ").concat(p.message);
|
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17
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+
return "".concat(prefix).concat(p.taskName, ": [").concat(p.current, "/").concat(p.max, "] ").concat(p.message);
|
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18
18
|
}
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|
19
19
|
var newPrefix = prefix + ' |_ ';
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20
20
|
var subTree = root.children.map(function (c) { return _format(c, newPrefix); });
|
|
21
21
|
if (p.isIndeterminate)
|
|
22
|
-
return ""
|
|
23
|
-
return ""
|
|
22
|
+
return "".concat(prefix).concat(p.taskName, ": ").concat(p.message, "\n").concat(subTree.join('\n'));
|
|
23
|
+
return "".concat(prefix).concat(p.taskName, ": [").concat(p.current, "/").concat(p.max, "] ").concat(p.message, "\n").concat(subTree.join('\n'));
|
|
24
24
|
}
|
|
25
25
|
function format(p) { return _format(p.root); }
|
|
26
26
|
Progress.format = format;
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"progress.js","sourceRoot":"","sources":["../../../../src/mol-task/execution/progress.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAUH,IAAU,QAAQ,CAsBjB;AAtBD,WAAU,QAAQ;IAQd,SAAS,OAAO,CAAC,IAAmB,EAAE,MAAW;QAAX,uBAAA,EAAA,WAAW;QAC7C,IAAM,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC;QACxB,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE;YACvB,IAAI,CAAC,CAAC,eAAe;gBAAE,OAAO,
|
|
1
|
+
{"version":3,"file":"progress.js","sourceRoot":"","sources":["../../../../src/mol-task/execution/progress.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAUH,IAAU,QAAQ,CAsBjB;AAtBD,WAAU,QAAQ;IAQd,SAAS,OAAO,CAAC,IAAmB,EAAE,MAAW;QAAX,uBAAA,EAAA,WAAW;QAC7C,IAAM,CAAC,GAAG,IAAI,CAAC,QAAQ,CAAC;QACxB,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,MAAM,EAAE;YACvB,IAAI,CAAC,CAAC,eAAe;gBAAE,OAAO,UAAG,MAAM,SAAG,CAAC,CAAC,QAAQ,eAAK,CAAC,CAAC,OAAO,CAAE,CAAC;YACrE,OAAO,UAAG,MAAM,SAAG,CAAC,CAAC,QAAQ,gBAAM,CAAC,CAAC,OAAO,cAAI,CAAC,CAAC,GAAG,eAAK,CAAC,CAAC,OAAO,CAAE,CAAC;SACzE;QAED,IAAM,SAAS,GAAG,MAAM,GAAG,OAAO,CAAC;QACnC,IAAM,OAAO,GAAG,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,OAAO,CAAC,CAAC,EAAE,SAAS,CAAC,EAArB,CAAqB,CAAC,CAAC;QAC9D,IAAI,CAAC,CAAC,eAAe;YAAE,OAAO,UAAG,MAAM,SAAG,CAAC,CAAC,QAAQ,eAAK,CAAC,CAAC,OAAO,eAAK,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAE,CAAC;QAC5F,OAAO,UAAG,MAAM,SAAG,CAAC,CAAC,QAAQ,gBAAM,CAAC,CAAC,OAAO,cAAI,CAAC,CAAC,GAAG,eAAK,CAAC,CAAC,OAAO,eAAK,OAAO,CAAC,IAAI,CAAC,IAAI,CAAC,CAAE,CAAC;IACjG,CAAC;IAED,SAAgB,MAAM,CAAC,CAAW,IAAI,OAAO,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAA/C,eAAM,SAAyC,CAAA;AACnE,CAAC,EAtBS,QAAQ,KAAR,QAAQ,QAsBjB;AAEQ,4BAAQ"}
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@@ -44,7 +44,7 @@ var Task;
|
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|
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44
|
Task.is = is;
|
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45
|
function isAbort(e) { return !!e && !!e.isAborted; }
|
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Task.isAbort = isAbort;
|
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|
-
function Aborted(reason) { return { isAborted: true, reason: reason, toString: function () { return "Aborted"
|
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47
|
+
function Aborted(reason) { return { isAborted: true, reason: reason, toString: function () { return "Aborted".concat(reason ? ': ' + reason : ''); } }; }
|
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|
Task.Aborted = Aborted;
|
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|
function create(name, f, onAbort) {
|
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|
return new Impl(name, f, onAbort);
|
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@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"task.js","sourceRoot":"","sources":["../../../src/mol-task/task.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAIH,qDAAqG;AACrG,uDAA6D;AAC7D,qDAAmD;AAsBnD,IAAU,IAAI,CA0Db;AA1DD,WAAU,IAAI;IACV;QAkBI,cAAmB,IAAY,EAAS,CAAsC,EAAS,OAAoB;YAAxF,SAAI,GAAJ,IAAI,CAAQ;YAAS,MAAC,GAAD,CAAC,CAAqC;YAAS,YAAO,GAAP,OAAO,CAAa;YACvG,IAAI,CAAC,EAAE,GAAG,SAAS,EAAE,CAAC;QAC1B,CAAC;QAjBD,kBAAG,GAAH,UAAI,QAA4B,EAAE,YAAkB;YAAlB,6BAAA,EAAA,kBAAkB;YAChD,IAAI,QAAQ;gBAAE,OAAO,IAAA,8BAAiB,EAAC,IAAI,EAAE,QAAQ,EAAE,YAAY,CAAC,CAAC;YACrE,OAAO,IAAI,CAAC,CAAC,CAAC,gCAAkB,CAAC,CAAC;QACtC,CAAC;QAED,yBAAU,GAAV,UAAW,GAAmB,EAAE,QAA0D;YACtF,IAAI,GAAG,CAAC,aAAa;gBAAE,OAAO,IAAI,CAAC,CAAC,CAAC,gCAAkB,CAAC,CAAC;YACzD,OAAO,IAAA,mCAAsB,EAAC,GAAG,EAAE,IAAI,EAAE,QAA2D,CAAC,CAAC;QAC1G,CAAC;QAED,2BAAY,GAAZ,UAAa,GAAmB;YAC5B,IAAI,GAAG,CAAC,aAAa;gBAAE,OAAO,IAAI,CAAC,CAAC,CAAC,gCAAkB,CAAC,CAAC;YACzD,OAAO,IAAA,6BAAgB,EAAC,GAAG,EAAE,IAAI,CAAC,CAAC;QACvC,CAAC;QAKL,WAAC;IAAD,CAAC,AArBD,IAqBC;IAED,SAAgB,EAAE,CAAU,CAAM;QAC9B,IAAM,EAAE,GAAG,CAAc,CAAC;QAC1B,OAAO,CAAC,CAAC,CAAC,IAAI,OAAO,EAAE,CAAC,EAAE,KAAK,QAAQ,IAAI,OAAO,EAAE,CAAC,IAAI,KAAK,QAAQ,IAAI,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC;IACvF,CAAC;IAHe,OAAE,KAGjB,CAAA;IAGD,SAAgB,OAAO,CAAC,CAAM,IAAkB,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC;IAA9D,YAAO,UAAuD,CAAA;IAC9E,SAAgB,OAAO,CAAC,MAAc,IAAa,OAAO,EAAE,SAAS,EAAE,IAAI,EAAE,MAAM,QAAA,EAAE,QAAQ,gBAAK,OAAO,
|
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1
|
+
{"version":3,"file":"task.js","sourceRoot":"","sources":["../../../src/mol-task/task.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAIH,qDAAqG;AACrG,uDAA6D;AAC7D,qDAAmD;AAsBnD,IAAU,IAAI,CA0Db;AA1DD,WAAU,IAAI;IACV;QAkBI,cAAmB,IAAY,EAAS,CAAsC,EAAS,OAAoB;YAAxF,SAAI,GAAJ,IAAI,CAAQ;YAAS,MAAC,GAAD,CAAC,CAAqC;YAAS,YAAO,GAAP,OAAO,CAAa;YACvG,IAAI,CAAC,EAAE,GAAG,SAAS,EAAE,CAAC;QAC1B,CAAC;QAjBD,kBAAG,GAAH,UAAI,QAA4B,EAAE,YAAkB;YAAlB,6BAAA,EAAA,kBAAkB;YAChD,IAAI,QAAQ;gBAAE,OAAO,IAAA,8BAAiB,EAAC,IAAI,EAAE,QAAQ,EAAE,YAAY,CAAC,CAAC;YACrE,OAAO,IAAI,CAAC,CAAC,CAAC,gCAAkB,CAAC,CAAC;QACtC,CAAC;QAED,yBAAU,GAAV,UAAW,GAAmB,EAAE,QAA0D;YACtF,IAAI,GAAG,CAAC,aAAa;gBAAE,OAAO,IAAI,CAAC,CAAC,CAAC,gCAAkB,CAAC,CAAC;YACzD,OAAO,IAAA,mCAAsB,EAAC,GAAG,EAAE,IAAI,EAAE,QAA2D,CAAC,CAAC;QAC1G,CAAC;QAED,2BAAY,GAAZ,UAAa,GAAmB;YAC5B,IAAI,GAAG,CAAC,aAAa;gBAAE,OAAO,IAAI,CAAC,CAAC,CAAC,gCAAkB,CAAC,CAAC;YACzD,OAAO,IAAA,6BAAgB,EAAC,GAAG,EAAE,IAAI,CAAC,CAAC;QACvC,CAAC;QAKL,WAAC;IAAD,CAAC,AArBD,IAqBC;IAED,SAAgB,EAAE,CAAU,CAAM;QAC9B,IAAM,EAAE,GAAG,CAAc,CAAC;QAC1B,OAAO,CAAC,CAAC,CAAC,IAAI,OAAO,EAAE,CAAC,EAAE,KAAK,QAAQ,IAAI,OAAO,EAAE,CAAC,IAAI,KAAK,QAAQ,IAAI,CAAC,CAAC,EAAE,CAAC,GAAG,CAAC;IACvF,CAAC;IAHe,OAAE,KAGjB,CAAA;IAGD,SAAgB,OAAO,CAAC,CAAM,IAAkB,OAAO,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,CAAC,CAAC;IAA9D,YAAO,UAAuD,CAAA;IAC9E,SAAgB,OAAO,CAAC,MAAc,IAAa,OAAO,EAAE,SAAS,EAAE,IAAI,EAAE,MAAM,QAAA,EAAE,QAAQ,gBAAK,OAAO,iBAAU,MAAM,CAAC,CAAC,CAAC,IAAI,GAAG,MAAM,CAAC,CAAC,CAAC,EAAE,CAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;IAAxI,YAAO,UAAiI,CAAA;IAExJ,SAAgB,MAAM,CAAI,IAAY,EAAE,CAAsC,EAAE,OAAoB;QAChG,OAAO,IAAI,IAAI,CAAC,IAAI,EAAE,CAAC,EAAE,OAAO,CAAC,CAAC;IACtC,CAAC;IAFe,WAAM,SAErB,CAAA;IAED,SAAgB,QAAQ,CAAI,IAAY,EAAE,KAAQ;QAAlD,iBAAyG;QAA1C,OAAO,MAAM,CAAC,IAAI,EAAE,UAAM,GAAG;YAAI,sBAAA,KAAK,EAAA;iBAAA,CAAC,CAAC;IAAC,CAAC;IAAzF,aAAQ,WAAiF,CAAA;IACzG,SAAgB,KAAK;QAArB,iBAA2E;QAArC,OAAO,MAAM,CAAC,EAAE,EAAE,UAAM,GAAG;;iBAAM,CAAC,CAAC;IAAC,CAAC;IAA3D,UAAK,QAAsD,CAAA;IAC3E,SAAgB,IAAI,CAAC,IAAY,EAAE,MAAc;QAAjD,iBAAiI;QAAjE,OAAO,MAAM,CAAC,IAAI,EAAE,UAAM,GAAG;YAAM,MAAM,IAAI,KAAK,CAAC,MAAM,CAAC,CAAC;iBAAE,CAAC,CAAC;IAAC,CAAC;IAAjH,SAAI,OAA6G,CAAA;IAEjI,SAAgB,gBAAgB,CAAI,MAAmB,EAAE,GAAoB;QACzE,IAAI,EAAE,CAAC,MAAM,CAAC;YAAE,OAAO,GAAG,CAAC,CAAC,CAAC,MAAM,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC;QACrE,OAAO,MAAM,CAAC;IAClB,CAAC;IAHe,qBAAgB,mBAG/B,CAAA;IAaD,IAAM,SAAS,GAAG,IAAA,sBAAS,EAAC,CAAC,EAAE,UAAU,CAAC,CAAC;AAC/C,CAAC,EA1DS,IAAI,KAAJ,IAAI,QA0Db;AAEQ,oBAAI"}
|
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@@ -11,7 +11,7 @@ var task_1 = require("../task");
|
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|
11
11
|
function MultistepTask(name, steps, f, onAbort) {
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12
12
|
var _this = this;
|
|
13
13
|
return function (params) { return task_1.Task.create(name, function (ctx) { return (0, tslib_1.__awaiter)(_this, void 0, void 0, function () { return (0, tslib_1.__generator)(this, function (_a) {
|
|
14
|
-
return [2 /*return*/, f(params, function (n) { return ctx.update({ message: ""
|
|
14
|
+
return [2 /*return*/, f(params, function (n) { return ctx.update({ message: "".concat(steps[n]), current: n + 1, max: steps.length }); }, ctx)];
|
|
15
15
|
}); }); }, onAbort); };
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}
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17
|
exports.MultistepTask = MultistepTask;
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@@ -1 +1 @@
|
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1
|
-
{"version":3,"file":"multistep.js","sourceRoot":"","sources":["../../../../src/mol-task/util/multistep.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,gCAA+B;AAM/B,SAAS,aAAa,CAAO,IAAY,EAAE,KAAe,EAAE,CAAoB,EAAE,OAAoB;IAAtG,iBAEC;IADG,OAAO,UAAC,MAAS,IAAK,OAAA,WAAI,CAAC,MAAM,CAAC,IAAI,EAAE,UAAM,GAAG;QAAI,sBAAA,CAAC,CAAC,MAAM,EAAE,UAAA,CAAC,IAAI,OAAA,GAAG,CAAC,MAAM,CAAC,EAAE,OAAO,EAAE,
|
|
1
|
+
{"version":3,"file":"multistep.js","sourceRoot":"","sources":["../../../../src/mol-task/util/multistep.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,gCAA+B;AAM/B,SAAS,aAAa,CAAO,IAAY,EAAE,KAAe,EAAE,CAAoB,EAAE,OAAoB;IAAtG,iBAEC;IADG,OAAO,UAAC,MAAS,IAAK,OAAA,WAAI,CAAC,MAAM,CAAC,IAAI,EAAE,UAAM,GAAG;QAAI,sBAAA,CAAC,CAAC,MAAM,EAAE,UAAA,CAAC,IAAI,OAAA,GAAG,CAAC,MAAM,CAAC,EAAE,OAAO,EAAE,UAAG,KAAK,CAAC,CAAC,CAAC,CAAE,EAAE,OAAO,EAAE,CAAC,GAAG,CAAC,EAAE,GAAG,EAAE,KAAK,CAAC,MAAM,EAAE,CAAC,EAAzE,CAAyE,EAAE,GAAG,CAAC,EAAA;aAAA,EAAE,OAAO,CAAC,EAAvI,CAAuI,CAAC;AAClK,CAAC;AAEQ,sCAAa"}
|
|
@@ -11,8 +11,8 @@ var hasPerformance = (typeof performance !== 'undefined') && performance.mark &&
|
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|
11
11
|
var timingEnabled = hasPerformance && !debug_1.isProductionMode;
|
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12
12
|
var UserTiming;
|
|
13
13
|
(function (UserTiming) {
|
|
14
|
-
function startMarkName(task) { return "startTask"
|
|
15
|
-
function endMarkName(task) { return "endTask"
|
|
14
|
+
function startMarkName(task) { return "startTask".concat(task.id); }
|
|
15
|
+
function endMarkName(task) { return "endTask".concat(task.id); }
|
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16
16
|
function markStart(task) {
|
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17
|
if (timingEnabled)
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18
18
|
performance.mark(startMarkName(task));
|
|
@@ -25,7 +25,7 @@ var UserTiming;
|
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25
25
|
UserTiming.markEnd = markEnd;
|
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26
26
|
function measure(task) {
|
|
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27
|
if (timingEnabled)
|
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28
|
-
performance.measure("\u2733\uFE0F "
|
|
28
|
+
performance.measure("\u2733\uFE0F ".concat(task.name), startMarkName(task), endMarkName(task));
|
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|
}
|
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|
UserTiming.measure = measure;
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31
31
|
})(UserTiming = exports.UserTiming || (exports.UserTiming = {}));
|
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@@ -1 +1 @@
|
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|
1
|
-
{"version":3,"file":"user-timing.js","sourceRoot":"","sources":["../../../../src/mol-task/util/user-timing.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAGH,8CAAwD;AAExD,IAAM,cAAc,GAAG,CAAC,OAAO,WAAW,KAAK,WAAW,CAAC,IAAI,WAAW,CAAC,IAAI,IAAI,WAAW,CAAC,OAAO,CAAC;AACvG,IAAM,aAAa,GAAG,cAAc,IAAI,CAAC,wBAAgB,CAAC;AAE1D,IAAiB,UAAU,CAY1B;AAZD,WAAiB,UAAU;IACvB,SAAS,aAAa,CAAC,IAAe,IAAI,OAAO,
|
|
1
|
+
{"version":3,"file":"user-timing.js","sourceRoot":"","sources":["../../../../src/mol-task/util/user-timing.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAGH,8CAAwD;AAExD,IAAM,cAAc,GAAG,CAAC,OAAO,WAAW,KAAK,WAAW,CAAC,IAAI,WAAW,CAAC,IAAI,IAAI,WAAW,CAAC,OAAO,CAAC;AACvG,IAAM,aAAa,GAAG,cAAc,IAAI,CAAC,wBAAgB,CAAC;AAE1D,IAAiB,UAAU,CAY1B;AAZD,WAAiB,UAAU;IACvB,SAAS,aAAa,CAAC,IAAe,IAAI,OAAO,mBAAY,IAAI,CAAC,EAAE,CAAE,CAAC,CAAC,CAAC;IACzE,SAAS,WAAW,CAAC,IAAe,IAAI,OAAO,iBAAU,IAAI,CAAC,EAAE,CAAE,CAAC,CAAC,CAAC;IACrE,SAAgB,SAAS,CAAC,IAAe;QACrC,IAAI,aAAa;YAAE,WAAW,CAAC,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,CAAC,CAAC;IAC7D,CAAC;IAFe,oBAAS,YAExB,CAAA;IACD,SAAgB,OAAO,CAAC,IAAe;QACnC,IAAI,aAAa;YAAE,WAAW,CAAC,IAAI,CAAC,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC;IAC3D,CAAC;IAFe,kBAAO,UAEtB,CAAA;IACD,SAAgB,OAAO,CAAC,IAAe;QACnC,IAAI,aAAa;YAAE,WAAW,CAAC,OAAO,CAAC,uBAAM,IAAI,CAAC,IAAI,CAAE,EAAE,aAAa,CAAC,IAAI,CAAC,EAAE,WAAW,CAAC,IAAI,CAAC,CAAC,CAAC;IACtG,CAAC;IAFe,kBAAO,UAEtB,CAAA;AACL,CAAC,EAZgB,UAAU,GAAV,kBAAU,KAAV,kBAAU,QAY1B"}
|
|
@@ -42,7 +42,7 @@ function getAsymIdKey(location, type) {
|
|
|
42
42
|
: asymId;
|
|
43
43
|
}
|
|
44
44
|
function getKey(model, asymId) {
|
|
45
|
-
return asymId
|
|
45
|
+
return "".concat(asymId, "|").concat((structure_1.Model.Index.get(model).value || 0) + 1);
|
|
46
46
|
}
|
|
47
47
|
function getAsymIdSerialMap(structure, type) {
|
|
48
48
|
var map = new Map();
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"chain-id.js","sourceRoot":"","sources":["../../../../src/mol-theme/color/chain-id.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,uDAAgH;AAChH,8CAA6C;AAG7C,oEAAwE;AAExE,wDAA4E;AAG5E,IAAM,WAAW,GAAG,eAAe,CAAC;AACpC,IAAM,YAAY,GAAG,IAAA,aAAK,EAAC,QAAQ,CAAC,CAAC;AACrC,IAAM,WAAW,GAAG,yDAAyD,CAAC;AAEjE,QAAA,uBAAuB,2BAChC,MAAM,EAAE,kCAAE,CAAC,MAAM,CAAC,MAAM,EAAE,kCAAE,CAAC,cAAc,CAAa,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC,IACxE,IAAA,0BAAgB,EAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,CAAC,EACjE;AAEF,SAAgB,0BAA0B,CAAC,GAAqB;;IAC5D,IAAM,MAAM,GAAG,kCAAE,CAAC,KAAK,CAAC,+BAAuB,CAAC,CAAC;IACjD,IAAI,MAAA,GAAG,CAAC,SAAS,0CAAE,MAAM,CAAC,IAAI,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,eAAe,CAAC,SAAS,EAA3B,CAA2B,CAAC,EAAE;QAC9D,MAAM,CAAC,MAAM,CAAC,YAAY,GAAG,OAAO,CAAC;KACxC;IACD,OAAO,MAAM,CAAC;AAClB,CAAC;AAND,gEAMC;AAID,SAAS,SAAS,CAAC,IAAU,EAAE,IAAgB;IAC3C,QAAQ,IAAI,CAAC,IAAI,EAAE;QACf;YACI,OAAO,IAAI,KAAK,MAAM;gBAClB,CAAC,CAAC,+BAAmB,CAAC,KAAK,CAAC,YAAY;gBACxC,CAAC,CAAC,+BAAmB,CAAC,KAAK,CAAC,aAAa,CAAC;QAClD,qBAAuB;QACvB;YACI,OAAO,+BAAmB,CAAC,MAAM,CAAC,OAAO,CAAC;KACjD;AACL,CAAC;AAED,SAAS,YAAY,CAAC,QAAmC,EAAE,IAAgB;IACvE,IAAM,MAAM,GAAG,SAAS,CAAC,QAAQ,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC,QAAQ,CAAC,CAAC;IACxD,OAAO,QAAQ,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC;QAC5C,CAAC,CAAC,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,EAAE,MAAM,CAAC;QACrC,CAAC,CAAC,MAAM,CAAC;AACjB,CAAC;AAED,SAAS,MAAM,CAAC,KAAY,EAAE,MAAc;IACxC,
|
|
1
|
+
{"version":3,"file":"chain-id.js","sourceRoot":"","sources":["../../../../src/mol-theme/color/chain-id.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,uDAAgH;AAChH,8CAA6C;AAG7C,oEAAwE;AAExE,wDAA4E;AAG5E,IAAM,WAAW,GAAG,eAAe,CAAC;AACpC,IAAM,YAAY,GAAG,IAAA,aAAK,EAAC,QAAQ,CAAC,CAAC;AACrC,IAAM,WAAW,GAAG,yDAAyD,CAAC;AAEjE,QAAA,uBAAuB,2BAChC,MAAM,EAAE,kCAAE,CAAC,MAAM,CAAC,MAAM,EAAE,kCAAE,CAAC,cAAc,CAAa,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC,CAAC,IACxE,IAAA,0BAAgB,EAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,CAAC,EACjE;AAEF,SAAgB,0BAA0B,CAAC,GAAqB;;IAC5D,IAAM,MAAM,GAAG,kCAAE,CAAC,KAAK,CAAC,+BAAuB,CAAC,CAAC;IACjD,IAAI,MAAA,GAAG,CAAC,SAAS,0CAAE,MAAM,CAAC,IAAI,CAAC,UAAA,CAAC,IAAI,OAAA,CAAC,CAAC,eAAe,CAAC,SAAS,EAA3B,CAA2B,CAAC,EAAE;QAC9D,MAAM,CAAC,MAAM,CAAC,YAAY,GAAG,OAAO,CAAC;KACxC;IACD,OAAO,MAAM,CAAC;AAClB,CAAC;AAND,gEAMC;AAID,SAAS,SAAS,CAAC,IAAU,EAAE,IAAgB;IAC3C,QAAQ,IAAI,CAAC,IAAI,EAAE;QACf;YACI,OAAO,IAAI,KAAK,MAAM;gBAClB,CAAC,CAAC,+BAAmB,CAAC,KAAK,CAAC,YAAY;gBACxC,CAAC,CAAC,+BAAmB,CAAC,KAAK,CAAC,aAAa,CAAC;QAClD,qBAAuB;QACvB;YACI,OAAO,+BAAmB,CAAC,MAAM,CAAC,OAAO,CAAC;KACjD;AACL,CAAC;AAED,SAAS,YAAY,CAAC,QAAmC,EAAE,IAAgB;IACvE,IAAM,MAAM,GAAG,SAAS,CAAC,QAAQ,CAAC,IAAI,EAAE,IAAI,CAAC,CAAC,QAAQ,CAAC,CAAC;IACxD,OAAO,QAAQ,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC;QAC5C,CAAC,CAAC,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,EAAE,MAAM,CAAC;QACrC,CAAC,CAAC,MAAM,CAAC;AACjB,CAAC;AAED,SAAS,MAAM,CAAC,KAAY,EAAE,MAAc;IACxC,OAAO,UAAG,MAAM,cAAI,CAAC,iBAAK,CAAC,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC,KAAK,IAAI,CAAC,CAAC,GAAG,CAAC,CAAE,CAAC;AAClE,CAAC;AAED,SAAS,kBAAkB,CAAC,SAAoB,EAAE,IAAgB;IAC9D,IAAM,GAAG,GAAG,IAAI,GAAG,EAAkB,CAAC;4BAC3B,CAAC;QACR,IAAM,YAAY,GAAG,iBAAK,CAAC,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;QACrD,IAAM,MAAM,GAAG,CAAC,IAAI,KAAK,MAAM,CAAC,CAAC,CAAC,YAAY,aAAZ,YAAY,uBAAZ,YAAY,CAAE,IAAI,CAAC,CAAC,CAAC,YAAY,aAAZ,YAAY,uBAAZ,YAAY,CAAE,KAAK,CAAC,IAAI,CAAC,CAAC;QACjF,IAAI,KAAK,GAAG,CAAC,CAAC;QACd,CAAC,CAAC,UAAU,CAAC,aAAa,CAAC,OAAO,CAAC,UAAC,EAAW,EAAE,QAAQ;gBAAnB,OAAO,aAAA;YACzC,IAAM,MAAM,GAAG,IAAI,KAAK,MAAM,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,QAAQ,CAAC;YACpD,IAAM,CAAC,GAAG,SAAS,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC;gBACjC,CAAC,CAAC,MAAM,CAAC,CAAC,EAAE,MAAM,CAAC;gBACnB,CAAC,CAAC,MAAM,CAAC;YACb,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE;gBACb,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,GAAG,MAAM,CAAC,CAAC;gBAC3B,EAAE,KAAK,CAAC;aACX;QACL,CAAC,CAAC,CAAC;;IAbP,KAAgB,UAAgB,EAAhB,KAAA,SAAS,CAAC,MAAM,EAAhB,cAAgB,EAAhB,IAAgB;QAA3B,IAAM,CAAC,SAAA;gBAAD,CAAC;KAcX;IACD,OAAO,GAAG,CAAC;AACf,CAAC;AAED,SAAgB,iBAAiB,CAAC,GAAqB,EAAE,KAAyC;IAC9F,IAAI,KAAoB,CAAC;IACzB,IAAI,MAA6C,CAAC;IAElD,IAAI,GAAG,CAAC,SAAS,EAAE;QACf,IAAM,GAAC,GAAG,4BAAgB,CAAC,QAAQ,CAAC,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC;QAC/D,IAAM,iBAAe,GAAG,kBAAkB,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,EAAE,KAAK,CAAC,MAAM,CAAC,CAAC;QAE7E,IAAM,YAAU,GAAG,KAAK,CAAC,IAAI,CAAC,iBAAe,CAAC,IAAI,EAAE,CAAC,CAAC;QACtD,IAAM,UAAU,GAAG,UAAC,CAAS,IAAK,OAAA,YAAU,CAAC,CAAC,CAAC,EAAb,CAAa,CAAC;QAEhD,IAAM,SAAO,GAAG,IAAA,oBAAU,EAAC,iBAAe,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,UAAU,YAAA,EAAE,CAAC,CAAC;QACxE,MAAM,GAAG,SAAO,CAAC,MAAM,CAAC;QAExB,KAAK,GAAG,UAAC,QAAkB;YACvB,IAAI,MAAM,GAAuB,SAAS,CAAC;YAC3C,IAAI,4BAAgB,CAAC,QAAQ,CAAC,EAAE,CAAC,QAAQ,CAAC,EAAE;gBACxC,IAAM,CAAC,GAAG,YAAY,CAAC,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC,CAAC;gBAC/C,MAAM,GAAG,iBAAe,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;aACnC;iBAAM,IAAI,gBAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE;gBAClC,GAAC,CAAC,IAAI,GAAG,QAAQ,CAAC,KAAK,CAAC;gBACxB,GAAC,CAAC,OAAO,GAAG,QAAQ,CAAC,KAAK,CAAC,QAAQ,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC;gBACrD,IAAM,CAAC,GAAG,YAAY,CAAC,GAAC,EAAE,KAAK,CAAC,MAAM,CAAC,CAAC;gBACxC,MAAM,GAAG,iBAAe,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;aACnC;YACD,OAAO,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,SAAO,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;QACvE,CAAC,CAAC;KACL;SAAM;QACH,KAAK,GAAG,cAAM,OAAA,YAAY,EAAZ,CAAY,CAAC;KAC9B;IAED,OAAO;QACH,OAAO,EAAE,iBAAiB;QAC1B,WAAW,EAAE,OAAO;QACpB,KAAK,OAAA;QACL,KAAK,OAAA;QACL,WAAW,EAAE,WAAW;QACxB,MAAM,QAAA;KACT,CAAC;AACN,CAAC;AAvCD,8CAuCC;AAEY,QAAA,yBAAyB,GAA6D;IAC/F,IAAI,EAAE,UAAU;IAChB,KAAK,EAAE,UAAU;IACjB,QAAQ,8BAA2B;IACnC,OAAO,EAAE,iBAAiB;IAC1B,SAAS,EAAE,0BAA0B;IACrC,aAAa,EAAE,kCAAE,CAAC,gBAAgB,CAAC,+BAAuB,CAAC;IAC3D,YAAY,EAAE,UAAC,GAAqB,IAAK,OAAA,CAAC,CAAC,GAAG,CAAC,SAAS,EAAf,CAAe;CAC3D,CAAC"}
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@@ -131,7 +131,7 @@ export declare const ElementSymbolColors: ColorMap<{
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}>;
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export declare type ElementSymbolColors = typeof ElementSymbolColors;
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export declare const ElementSymbolColorThemeParams: {
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carbonColor: PD.Mapped<PD.NamedParams<PD.Normalize<{
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carbonColor: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "element-symbol"> | PD.NamedParams<PD.Normalize<{
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palette: PD.NamedParams<PD.Normalize<{
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maxCount: any;
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hue: any;
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@@ -154,13 +154,13 @@ export declare const ElementSymbolColorThemeParams: {
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}>, "generate"> | PD.NamedParams<PD.Normalize<{
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list: any;
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}>, "colors">;
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}>, "operator-name"
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}>, "operator-name">>;
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saturation: PD.Numeric;
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lightness: PD.Numeric;
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};
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export declare type ElementSymbolColorThemeParams = typeof ElementSymbolColorThemeParams;
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export declare function getElementSymbolColorThemeParams(ctx: ThemeDataContext): {
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carbonColor: PD.Mapped<PD.NamedParams<PD.Normalize<{
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carbonColor: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "element-symbol"> | PD.NamedParams<PD.Normalize<{
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palette: PD.NamedParams<PD.Normalize<{
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hue: any;
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@@ -183,7 +183,7 @@ export declare function getElementSymbolColorThemeParams(ctx: ThemeDataContext):
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}>, "generate"> | PD.NamedParams<PD.Normalize<{
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list: any;
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}>, "colors">;
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}>, "operator-name"
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}>, "operator-name">>;
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saturation: PD.Numeric;
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lightness: PD.Numeric;
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};
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@@ -21,7 +21,7 @@ function getEntityIdColorThemeParams(ctx) {
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}
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exports.getEntityIdColorThemeParams = getEntityIdColorThemeParams;
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function key(entityId, modelIndex) {
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return entityId
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return "".concat(entityId, "|").concat(modelIndex);
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}
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function getEntityIdSerialMap(structure) {
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var map = new Map();
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"entity-id.js","sourceRoot":"","sources":["../../../../src/mol-theme/color/entity-id.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,uDAAmG;AACnG,8CAA6C;AAG7C,oEAAwE;AAExE,wDAA4E;AAG5E,IAAM,WAAW,GAAG,eAAe,CAAC;AACpC,IAAM,YAAY,GAAG,IAAA,aAAK,EAAC,QAAQ,CAAC,CAAC;AACrC,IAAM,WAAW,GAAG,iEAAiE,CAAC;AAEzE,QAAA,wBAAwB,6BAC9B,IAAA,0BAAgB,EAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,CAAC,EACjE;AAEF,SAAgB,2BAA2B,CAAC,GAAqB;IAC7D,IAAM,MAAM,GAAG,kCAAE,CAAC,KAAK,CAAC,gCAAwB,CAAC,CAAC;IAClD,OAAO,MAAM,CAAC;AAClB,CAAC;AAHD,kEAGC;AAED,SAAS,GAAG,CAAC,QAAgB,EAAE,UAAkB;IAC7C,
|
|
1
|
+
{"version":3,"file":"entity-id.js","sourceRoot":"","sources":["../../../../src/mol-theme/color/entity-id.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,uDAAmG;AACnG,8CAA6C;AAG7C,oEAAwE;AAExE,wDAA4E;AAG5E,IAAM,WAAW,GAAG,eAAe,CAAC;AACpC,IAAM,YAAY,GAAG,IAAA,aAAK,EAAC,QAAQ,CAAC,CAAC;AACrC,IAAM,WAAW,GAAG,iEAAiE,CAAC;AAEzE,QAAA,wBAAwB,6BAC9B,IAAA,0BAAgB,EAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,CAAC,EACjE;AAEF,SAAgB,2BAA2B,CAAC,GAAqB;IAC7D,IAAM,MAAM,GAAG,kCAAE,CAAC,KAAK,CAAC,gCAAwB,CAAC,CAAC;IAClD,OAAO,MAAM,CAAC;AAClB,CAAC;AAHD,kEAGC;AAED,SAAS,GAAG,CAAC,QAAgB,EAAE,UAAkB;IAC7C,OAAO,UAAG,QAAQ,cAAI,UAAU,CAAE,CAAC;AACvC,CAAC;AAED,SAAS,oBAAoB,CAAC,SAAoB;IAC9C,IAAM,GAAG,GAAG,IAAI,GAAG,EAAkB,CAAC;IACtC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,SAAS,CAAC,MAAM,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QAC/C,IAAA,eAAe,GAAK,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,eAAe,CAAC,MAAM,gBAA/C,CAAgD;QACvE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,eAAe,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YACxD,IAAM,CAAC,GAAG,GAAG,CAAC,eAAe,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;YAC3C,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC;gBAAE,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,GAAG,CAAC,IAAI,CAAC,CAAC;SACzC;KACJ;IACD,OAAO,GAAG,CAAC;AACf,CAAC;AAED,SAAgB,kBAAkB,CAAC,GAAqB,EAAE,KAA0C;IAChG,IAAI,KAAoB,CAAC;IACzB,IAAI,MAA6C,CAAC;IAElD,IAAI,GAAG,CAAC,SAAS,EAAE;QACf,IAAM,GAAC,GAAG,4BAAgB,CAAC,QAAQ,CAAC,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC;QAC/D,IAAM,mBAAiB,GAAG,oBAAoB,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC;QAEnE,IAAM,YAAU,GAAG,KAAK,CAAC,IAAI,CAAC,mBAAiB,CAAC,IAAI,EAAE,CAAC,CAAC;QACxD,IAAM,UAAU,GAAG,UAAC,CAAS,IAAK,OAAA,YAAU,CAAC,CAAC,CAAC,EAAb,CAAa,CAAC;QAEhD,IAAM,SAAO,GAAG,IAAA,oBAAU,EAAC,mBAAiB,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,UAAU,YAAA,EAAE,CAAC,CAAC;QAC1E,MAAM,GAAG,SAAO,CAAC,MAAM,CAAC;QAExB,KAAK,GAAG,UAAC,QAAkB;YACvB,IAAI,MAAM,GAAuB,SAAS,CAAC;YAC3C,IAAI,4BAAgB,CAAC,QAAQ,CAAC,EAAE,CAAC,QAAQ,CAAC,EAAE;gBACxC,IAAM,MAAM,GAAG,+BAAmB,CAAC,KAAK,CAAC,eAAe,CAAC,QAAQ,CAAC,CAAC;gBACnE,IAAM,UAAU,GAAG,QAAQ,CAAC,SAAS,CAAC,MAAM,CAAC,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;gBAC1E,IAAM,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;gBAClC,MAAM,GAAG,mBAAiB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;aACrC;iBAAM,IAAI,gBAAI,CAAC,UAAU,CAAC,QAAQ,CAAC,EAAE;gBAClC,GAAC,CAAC,IAAI,GAAG,QAAQ,CAAC,KAAK,CAAC;gBACxB,GAAC,CAAC,OAAO,GAAG,QAAQ,CAAC,KAAK,CAAC,QAAQ,CAAC,QAAQ,CAAC,MAAM,CAAC,CAAC;gBACrD,IAAM,MAAM,GAAG,+BAAmB,CAAC,KAAK,CAAC,eAAe,CAAC,GAAC,CAAC,CAAC;gBAC5D,IAAM,UAAU,GAAG,GAAC,CAAC,SAAS,CAAC,MAAM,CAAC,OAAO,CAAC,GAAC,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;gBAC5D,IAAM,CAAC,GAAG,GAAG,CAAC,MAAM,EAAE,UAAU,CAAC,CAAC;gBAClC,MAAM,GAAG,mBAAiB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;aACrC;YACD,OAAO,MAAM,KAAK,SAAS,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,SAAO,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC;QACvE,CAAC,CAAC;KACL;SAAM;QACH,KAAK,GAAG,cAAM,OAAA,YAAY,EAAZ,CAAY,CAAC;KAC9B;IAED,OAAO;QACH,OAAO,EAAE,kBAAkB;QAC3B,WAAW,EAAE,OAAO;QACpB,KAAK,OAAA;QACL,KAAK,OAAA;QACL,WAAW,EAAE,WAAW;QACxB,MAAM,QAAA;KACT,CAAC;AACN,CAAC;AA3CD,gDA2CC;AAEY,QAAA,0BAA0B,GAA+D;IAClG,IAAI,EAAE,WAAW;IACjB,KAAK,EAAE,WAAW;IAClB,QAAQ,8BAA2B;IACnC,OAAO,EAAE,kBAAkB;IAC3B,SAAS,EAAE,2BAA2B;IACtC,aAAa,EAAE,kCAAE,CAAC,gBAAgB,CAAC,gCAAwB,CAAC;IAC5D,YAAY,EAAE,UAAC,GAAqB,IAAK,OAAA,CAAC,CAAC,GAAG,CAAC,SAAS,EAAf,CAAe;CAC3D,CAAC"}
|
|
@@ -30,10 +30,10 @@ function getEntitySourceColorThemeParams(ctx) {
|
|
|
30
30
|
}
|
|
31
31
|
exports.getEntitySourceColorThemeParams = getEntitySourceColorThemeParams;
|
|
32
32
|
function modelEntityKey(modelIndex, entityId) {
|
|
33
|
-
return modelIndex
|
|
33
|
+
return "".concat(modelIndex, "|").concat(entityId);
|
|
34
34
|
}
|
|
35
35
|
function srcKey(modelIndex, entityId, organism, srcId, plasmid, gene) {
|
|
36
|
-
return modelIndex
|
|
36
|
+
return "".concat(modelIndex, "|").concat(entityId, "|").concat(organism, "|").concat(gene ? gene : (plasmid ? plasmid : srcId));
|
|
37
37
|
}
|
|
38
38
|
function addSrc(seqToSrcByModelEntity, srcKeySerialMap, modelIndex, model, entity_src, scientific_name, plasmid_name, gene_src_gene) {
|
|
39
39
|
var entity_id = entity_src.entity_id, pdbx_src_id = entity_src.pdbx_src_id, pdbx_beg_seq_num = entity_src.pdbx_beg_seq_num, pdbx_end_seq_num = entity_src.pdbx_end_seq_num;
|
|
@@ -89,8 +89,8 @@ function getLabelTable(srcKeySerialMap) {
|
|
|
89
89
|
return Array.from(srcKeySerialMap.keys()).map(function (v) {
|
|
90
90
|
var vs = v.split('|');
|
|
91
91
|
var organism = vs[2];
|
|
92
|
-
var name = (0, number_1.isInteger)(vs[3]) ? "Unnamed "
|
|
93
|
-
return ""
|
|
92
|
+
var name = (0, number_1.isInteger)(vs[3]) ? "Unnamed ".concat(++unnamedCount) : vs[3];
|
|
93
|
+
return "".concat(name).concat(organism ? " (".concat(organism, ")") : '');
|
|
94
94
|
});
|
|
95
95
|
}
|
|
96
96
|
function EntitySourceColorTheme(ctx, props) {
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"entity-source.js","sourceRoot":"","sources":["../../../../src/mol-theme/color/entity-source.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,uDAA+F;AAC/F,8CAA6C;AAG7C,oEAAwE;AAIxE,wDAA4E;AAE5E,gDAAkD;AAClD,oDAA8E;AAC9E,iEAAsE;AAEtE,IAAM,WAAW,GAAG,QAAQ,CAAC;AAC7B,IAAM,YAAY,GAAG,IAAA,aAAK,EAAC,QAAQ,CAAC,CAAC;AACrC,IAAM,WAAW,GAAG,uHAAuH,CAAC;AAE/H,QAAA,4BAA4B,6BAClC,IAAA,0BAAgB,EAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,CAAC,EACjE;AAEF,SAAgB,+BAA+B,CAAC,GAAqB;IACjE,IAAM,MAAM,GAAG,kCAAE,CAAC,KAAK,CAAC,oCAA4B,CAAC,CAAC;IACtD,IAAI,GAAG,CAAC,SAAS,EAAE;QACf,IAAI,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,eAAe,CAAC,IAAI,GAAG,kBAAU,CAAC,WAAW,CAAC,CAAC,IAAI,CAAC,MAAM,EAAE;YAC/F,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,IAAI,GAAG,QAAQ,CAAC;YAC5C,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,MAAM,mDAC3B,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,MAAM,KACrC,IAAI,EAAE,EAAE,IAAI,EAAE,aAAa,EAAE,MAAM,EAAE,IAAA,4BAAoB,EAAC,WAAW,CAAC,CAAC,IAAI,EAAE,GAChF,CAAC;SACL;KACJ;IACD,OAAO,MAAM,CAAC;AAClB,CAAC;AAZD,0EAYC;AAED,SAAS,cAAc,CAAC,UAAkB,EAAE,QAAgB;IACxD,
|
|
1
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+
{"version":3,"file":"entity-source.js","sourceRoot":"","sources":["../../../../src/mol-theme/color/entity-source.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,uDAA+F;AAC/F,8CAA6C;AAG7C,oEAAwE;AAIxE,wDAA4E;AAE5E,gDAAkD;AAClD,oDAA8E;AAC9E,iEAAsE;AAEtE,IAAM,WAAW,GAAG,QAAQ,CAAC;AAC7B,IAAM,YAAY,GAAG,IAAA,aAAK,EAAC,QAAQ,CAAC,CAAC;AACrC,IAAM,WAAW,GAAG,uHAAuH,CAAC;AAE/H,QAAA,4BAA4B,6BAClC,IAAA,0BAAgB,EAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,CAAC,EACjE;AAEF,SAAgB,+BAA+B,CAAC,GAAqB;IACjE,IAAM,MAAM,GAAG,kCAAE,CAAC,KAAK,CAAC,oCAA4B,CAAC,CAAC;IACtD,IAAI,GAAG,CAAC,SAAS,EAAE;QACf,IAAI,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,eAAe,CAAC,IAAI,GAAG,kBAAU,CAAC,WAAW,CAAC,CAAC,IAAI,CAAC,MAAM,EAAE;YAC/F,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,IAAI,GAAG,QAAQ,CAAC;YAC5C,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,MAAM,mDAC3B,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,MAAM,KACrC,IAAI,EAAE,EAAE,IAAI,EAAE,aAAa,EAAE,MAAM,EAAE,IAAA,4BAAoB,EAAC,WAAW,CAAC,CAAC,IAAI,EAAE,GAChF,CAAC;SACL;KACJ;IACD,OAAO,MAAM,CAAC;AAClB,CAAC;AAZD,0EAYC;AAED,SAAS,cAAc,CAAC,UAAkB,EAAE,QAAgB;IACxD,OAAO,UAAG,UAAU,cAAI,QAAQ,CAAE,CAAC;AACvC,CAAC;AAYD,SAAS,MAAM,CAAC,UAAkB,EAAE,QAAgB,EAAE,QAAgB,EAAE,KAAa,EAAE,OAAe,EAAE,IAAY;IAChH,OAAO,UAAG,UAAU,cAAI,QAAQ,cAAI,QAAQ,cAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,KAAK,CAAC,CAAE,CAAC;AAChG,CAAC;AAED,SAAS,MAAM,CAAC,qBAA8C,EAAE,eAAoC,EAAE,UAAkB,EAAE,KAAY,EAAE,UAAqB,EAAE,eAA+B,EAAE,YAA0B,EAAE,aAA2B;IAC3O,IAAA,SAAS,GAAsD,UAAU,UAAhE,EAAE,WAAW,GAAyC,UAAU,YAAnD,EAAE,gBAAgB,GAAuB,UAAU,iBAAjC,EAAE,gBAAgB,GAAK,UAAU,iBAAf,CAAgB;IAClF,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,UAAU,CAAC,SAAS,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QACpD,IAAM,QAAQ,GAAG,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QACpC,IAAM,EAAE,GAAG,cAAc,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAC;QAChD,IAAI,QAAQ,SAAY,CAAC;QACzB,IAAI,CAAC,qBAAqB,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE;YAChC,IAAM,WAAW,GAAG,KAAK,CAAC,QAAQ,CAAC,cAAc,CAAC,QAAQ,CAAC,CAAC;YAC5D,IAAM,GAAG,GAAG,KAAK,CAAC,QAAQ,CAAC,SAAS,CAAC,WAAW,CAAC,CAAC,QAAQ,CAAC;YAC3D,QAAQ,GAAG,IAAI,UAAU,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;YACtC,qBAAqB,CAAC,GAAG,CAAC,EAAE,EAAE,QAAQ,CAAC,CAAC;SAC3C;aAAM;YACH,QAAQ,GAAG,qBAAqB,CAAC,GAAG,CAAC,EAAE,CAAE,CAAC;SAC7C;QAED,IAAM,OAAO,GAAG,YAAY,CAAC,CAAC,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;QAC1D,IAAM,IAAI,GAAG,aAAa,CAAC,CAAC,CAAC,aAAa,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;QAC5D,IAAM,EAAE,GAAG,MAAM,CAAC,UAAU,EAAE,QAAQ,EAAE,eAAe,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,WAAW,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,OAAO,EAAE,IAAI,CAAC,CAAC;QAEvG,6DAA6D;QAC7D,IAAM,GAAG,GAAG,gBAAgB,CAAC,SAAS,CAAC,CAAC,CAAC,oBAA6B,CAAC,CAAC,CAAC,gBAAgB,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC;QACvG,IAAM,GAAG,GAAG,gBAAgB,CAAC,SAAS,CAAC,CAAC,CAAC,oBAA6B,CAAC,CAAC,CAAC,gBAAgB,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,QAAQ,CAAC,MAAM,CAAC;QAErH,IAAI,QAAQ,SAAQ,CAAC,CAAC,4BAA4B;QAClD,IAAI,eAAe,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE;YACzB,QAAQ,GAAG,eAAe,CAAC,GAAG,CAAC,EAAE,CAAE,CAAC;SACvC;aAAM;YACH,QAAQ,GAAG,eAAe,CAAC,IAAI,GAAG,CAAC,CAAC;YACpC,eAAe,CAAC,GAAG,CAAC,EAAE,EAAE,QAAQ,CAAC,CAAC;SACrC;QACD,gBAAgB;QAChB,KAAK,IAAI,CAAC,GAAG,GAAG,EAAE,EAAE,GAAG,GAAG,EAAE,CAAC,IAAI,EAAE,EAAE,EAAE,CAAC,EAAE;YACtC,QAAQ,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,QAAQ,CAAC;SAC9B;KACJ;AACL,CAAC;AAED,SAAS,OAAO,CAAC,MAA4B;IACzC,IAAM,qBAAqB,GAAG,IAAI,GAAG,EAAsB,CAAC;IAC5D,IAAM,eAAe,GAAG,IAAI,GAAG,EAAkB,CAAC,CAAC,4BAA4B;IAE/E,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QAC7C,IAAM,CAAC,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;QACpB,IAAI,CAAC,mBAAW,CAAC,EAAE,CAAC,CAAC,CAAC,UAAU,CAAC;YAAE,SAAS;QACtC,IAAA,KAA0D,CAAC,CAAC,UAAU,CAAC,IAAI,CAAC,EAAE,EAA5E,cAAc,oBAAA,EAAE,cAAc,oBAAA,EAAE,mBAAmB,yBAAyB,CAAC;QACrF,MAAM,CAAC,qBAAqB,EAAE,eAAe,EAAE,CAAC,EAAE,CAAC,EAAE,cAAc,EAAE,cAAc,CAAC,6BAA6B,EAAE,cAAc,CAAC,YAAY,EAAE,cAAc,CAAC,kBAAkB,CAAC,CAAC;QACnL,MAAM,CAAC,qBAAqB,EAAE,eAAe,EAAE,CAAC,EAAE,CAAC,EAAE,cAAc,EAAE,cAAc,CAAC,wBAAwB,EAAE,cAAc,CAAC,iBAAiB,CAAC,CAAC;QAChJ,MAAM,CAAC,qBAAqB,EAAE,eAAe,EAAE,CAAC,EAAE,CAAC,EAAE,mBAAmB,EAAE,mBAAmB,CAAC,mBAAmB,CAAC,CAAC;KACtH;IAED,OAAO,EAAE,qBAAqB,uBAAA,EAAE,eAAe,iBAAA,EAAE,CAAC;AACtD,CAAC;AAED,SAAS,aAAa,CAAC,eAAoC;IACvD,IAAI,YAAY,GAAG,CAAC,CAAC;IACrB,OAAO,KAAK,CAAC,IAAI,CAAC,eAAe,CAAC,IAAI,EAAE,CAAC,CAAC,GAAG,CAAC,UAAA,CAAC;QAC3C,IAAM,EAAE,GAAG,CAAC,CAAC,KAAK,CAAC,GAAG,CAAC,CAAC;QACxB,IAAM,QAAQ,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC;QACvB,IAAM,IAAI,GAAG,IAAA,kBAAS,EAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,kBAAW,EAAE,YAAY,CAAE,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;QACpE,OAAO,UAAG,IAAI,SAAG,QAAQ,CAAC,CAAC,CAAC,YAAK,QAAQ,MAAG,CAAC,CAAC,CAAC,EAAE,CAAE,CAAC;IACxD,CAAC,CAAC,CAAC;AACP,CAAC;AAED,SAAgB,sBAAsB,CAAC,GAAqB,EAAE,KAA8C;IACxG,IAAI,KAAoB,CAAC;IACzB,IAAI,MAA6C,CAAC;IAElD,IAAI,GAAG,CAAC,SAAS,EAAE;QACf,IAAM,GAAC,GAAG,4BAAgB,CAAC,QAAQ,CAAC,MAAM,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;QAClD,IAAA,QAAM,GAAK,GAAG,CAAC,SAAS,CAAC,IAAI,OAAvB,CAAwB;QAChC,IAAA,KAA6C,OAAO,CAAC,QAAM,CAAC,EAA1D,uBAAqB,2BAAA,EAAE,eAAe,qBAAoB,CAAC;QAEnE,IAAM,YAAU,GAAG,aAAa,CAAC,eAAe,CAAC,CAAC;QAClD,IAAM,UAAU,GAA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|
@@ -30,7 +30,7 @@ function getOperatorHklColorThemeParams(ctx) {
|
|
|
30
30
|
exports.getOperatorHklColorThemeParams = getOperatorHklColorThemeParams;
|
|
31
31
|
var hklOffset = 10000;
|
|
32
32
|
function hklKey(hkl) {
|
|
33
|
-
return hkl.map(function (v) { return
|
|
33
|
+
return hkl.map(function (v) { return "".concat(v + hklOffset).padStart(5, '0'); }).join('');
|
|
34
34
|
}
|
|
35
35
|
function hklKeySplit(key) {
|
|
36
36
|
var len = (0, number_1.integerDigitCount)(hklOffset, 0);
|
|
@@ -67,7 +67,7 @@ function OperatorHklColorTheme(ctx, props) {
|
|
|
67
67
|
if (labelTable_1[i] === undefined)
|
|
68
68
|
labelTable_1[i] = label;
|
|
69
69
|
else
|
|
70
|
-
labelTable_1[i] += ", "
|
|
70
|
+
labelTable_1[i] += ", ".concat(label);
|
|
71
71
|
});
|
|
72
72
|
var labelOptions = {
|
|
73
73
|
minLabel: formatHkl(min),
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"operator-hkl.js","sourceRoot":"","sources":["../../../../src/mol-theme/color/operator-hkl.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,8CAA6C;AAC7C,uDAA8E;AAG9E,oEAAwE;AAExE,wDAA4E;AAG5E,gDAA0D;AAC1D,oDAA8E;AAE9E,IAAM,WAAW,GAAG,QAAQ,CAAC;AAC7B,IAAM,YAAY,GAAG,IAAA,aAAK,EAAC,QAAQ,CAAC,CAAC;AACrC,IAAM,WAAW,GAAG,yEAAyE,CAAC;AAEjF,QAAA,2BAA2B,6BACjC,IAAA,0BAAgB,EAAC,EAAE,IAAI,EAAE,QAAQ,EAAE,SAAS,EAAE,WAAW,EAAE,CAAC,EACjE;AAEF,SAAgB,8BAA8B,CAAC,GAAqB;IAChE,IAAM,MAAM,GAAG,kCAAE,CAAC,KAAK,CAAC,mCAA2B,CAAC,CAAC;IACrD,IAAI,GAAG,CAAC,SAAS,EAAE;QACf,IAAI,uBAAuB,CAAC,GAAG,CAAC,SAAS,CAAC,IAAI,CAAC,CAAC,GAAG,CAAC,IAAI,GAAG,kBAAU,CAAC,WAAW,CAAC,CAAC,IAAI,CAAC,MAAM,EAAE;YAC5F,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,IAAI,GAAG,QAAQ,CAAC;YAC5C,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,MAAM,mDAC3B,MAAM,CAAC,OAAO,CAAC,YAAY,CAAC,MAAM,KACrC,IAAI,EAAE,EAAE,IAAI,EAAE,aAAa,EAAE,MAAM,EAAE,IAAA,4BAAoB,EAAC,WAAW,CAAC,CAAC,IAAI,EAAE,GAChF,CAAC;SACL;KACJ;IACD,OAAO,MAAM,CAAC;AAClB,CAAC;AAZD,wEAYC;AAED,IAAM,SAAS,GAAG,KAAK,CAAC;AAExB,SAAS,MAAM,CAAC,GAAS;IACrB,OAAO,GAAG,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,
|
|
1
|
+
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@@ -102,7 +102,7 @@ declare namespace ColorTheme {
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}>, "colors">>;
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}, "element-index">;
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'element-symbol': Provider<{
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carbonColor: PD.Mapped<PD.NamedParams<PD.Normalize<{
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carbonColor: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "element-symbol"> | PD.NamedParams<PD.Normalize<{
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palette: PD.NamedParams<PD.Normalize<{
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maxCount: any;
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hue: any;
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}>, "generate"> | PD.NamedParams<PD.Normalize<{
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list: any;
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}>, "colors">;
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}>, "operator-name"
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}>, "operator-name">>;
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saturation: PD.Numeric;
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lightness: PD.Numeric;
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}, "element-symbol">;
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return loci.volume.label || 'Volume';
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case 'isosurface-loci':
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return [
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""
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"Isosurface at "
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"".concat(loci.volume.label || 'Volume'),
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"Isosurface at ".concat(volume_1.Volume.IsoValue.toString(loci.isoValue))
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].join(' | ');
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case 'cell-loci':
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var size = int_1.OrderedSet.size(loci.indices);
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var absVal = volume_1.Volume.IsoValue.absolute(loci.volume.grid.cells.data[start]);
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var relVal = volume_1.Volume.IsoValue.toRelative(absVal, loci.volume.grid.stats);
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""
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""
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"".concat(loci.volume.label || 'Volume'),
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"".concat(size === 1 ? "Cell #".concat(start) : "".concat(size, " Cells"))
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];
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label.push(volume_1.Volume.IsoValue.toString(absVal)
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label.push("".concat(volume_1.Volume.IsoValue.toString(absVal), " (").concat(volume_1.Volume.IsoValue.toString(relVal), ")"));
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}
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return label.join(' | ');
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}
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}
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function countLabel(count, label) {
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return count === 1 ? "1 "
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return count === 1 ? "1 ".concat(label) : "".concat(count, " ").concat(label, "s");
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}
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function otherLabel(count, location, granularity, hidePrefix, reverse, condensed) {
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return elementLabel(location, { granularity: granularity, hidePrefix: hidePrefix, reverse: reverse, condensed: condensed })
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return "".concat(elementLabel(location, { granularity: granularity, hidePrefix: hidePrefix, reverse: reverse, condensed: condensed }), " <small>[+ ").concat(countLabel(count - 1, "other ".concat((0, string_1.capitalize)(granularity))), "]</small>");
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}
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/** Gets residue count of the model chain segments the unit is a subset of */
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function getResidueCount(unit) {
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@@ -238,10 +238,10 @@ function _elementLabel(location, granularity, hidePrefix, reverse) {
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entry = entry.substr(0, 27) + '\u2026'; // ellipsis
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label.push("<small>"
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label.push("<small>".concat(entry, "</small>")); // entry
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label.push("<small>Model "
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label.push("<small>Instance "
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label.push("<small>Model ".concat(location.unit.model.modelNum, "</small>")); // model
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label.push("<small>Instance ".concat(location.unit.conformation.operator.name, "</small>")); // instance
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}
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}
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if (structure_1.Unit.isAtomic(location.unit)) {
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@@ -270,33 +270,33 @@ function _atomicElementLabel(location, granularity, hideOccupancy) {
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var occupancy = structure_1.StructureProperties.atom.occupancy(location);
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var microHetCompIds = structure_1.StructureProperties.residue.microheterogeneityCompIds(location);
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"("
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"(".concat(microHetCompIds.join('|'), ")") : comp_id;
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var label = [];
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switch (granularity) {
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case 'element':
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label.push("<b>"
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label.push("<b>".concat(atom_id, "</b>").concat(alt_id ? "%".concat(alt_id) : ''));
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case 'conformation':
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if (granularity === 'conformation' && alt_id) {
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label.push("<small>Conformation</small> <b>"
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label.push("<small>Conformation</small> <b>".concat(alt_id, "</b>"));
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}
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case 'residue':
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var seq_id = label_seq_id === auth_seq_id || !has_label_seq_id ? auth_seq_id : label_seq_id;
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label.push("<b>"
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label.push("<b>".concat(compId, " ").concat(seq_id, "</b>").concat(seq_id !== auth_seq_id ? " <small>[auth</small> <b>".concat(auth_seq_id, "</b><small>]</small>") : '', "<b>").concat(ins_code ? ins_code : '', "</b>"));
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case 'chain':
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if (label_asym_id === auth_asym_id) {
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label.push("<b>"
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+
label.push("<b>".concat(label_asym_id, "</b>"));
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}
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else {
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if (granularity === 'chain' && structure_1.Unit.Traits.is(location.unit.traits, 1 /* MultiChain */)) {
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|
-
label.push("<small>[auth</small> <b>"
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+
label.push("<small>[auth</small> <b>".concat(auth_asym_id, "</b><small>]</small>"));
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}
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else {
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label.push("<b>"
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|
+
label.push("<b>".concat(label_asym_id, "</b> <small>[auth</small> <b>").concat(auth_asym_id, "</b><small>]</small>"));
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}
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|
}
|
|
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|
}
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|
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|
if (label.length > 0 && occupancy !== 1 && !hideOccupancy) {
|
|
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|
-
label[0] = label[0]
|
|
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|
+
label[0] = "".concat(label[0], " <small>[occupancy</small> <b>").concat(Math.round(100 * occupancy) / 100, "</b><small>]</small>");
|
|
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|
}
|
|
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|
return label.reverse();
|
|
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|
}
|
|
@@ -313,13 +313,13 @@ function _coarseElementLabel(location, granularity) {
|
|
|
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|
var entityIndex = structure_1.StructureProperties.coarse.entityKey(location);
|
|
314
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|
var seq = location.unit.model.sequence.byEntityKey[entityIndex];
|
|
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|
var comp_id = seq.sequence.compId.value(seq_id_begin - 1); // 1-indexed
|
|
316
|
-
label.push("<b>"
|
|
316
|
+
label.push("<b>".concat(comp_id, " ").concat(seq_id_begin, "</b>"));
|
|
317
317
|
}
|
|
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|
else {
|
|
319
|
-
label.push("<b>"
|
|
319
|
+
label.push("<b>".concat(seq_id_begin, "-").concat(seq_id_end, "</b>"));
|
|
320
320
|
}
|
|
321
321
|
case 'chain':
|
|
322
|
-
label.push("<b>"
|
|
322
|
+
label.push("<b>".concat(asym_id, "</b>"));
|
|
323
323
|
}
|
|
324
324
|
return label.reverse();
|
|
325
325
|
}
|
|
@@ -328,11 +328,11 @@ function distanceLabel(pair, options) {
|
|
|
328
328
|
if (options === void 0) { options = {}; }
|
|
329
329
|
var o = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.DefaultLabelOptions), { measureOnly: false, unitLabel: '\u212B' }), options);
|
|
330
330
|
var _a = pair.loci.map(function (l) { return loci_1.Loci.getCenter(l); }), cA = _a[0], cB = _a[1];
|
|
331
|
-
var distance = linear_algebra_1.Vec3.distance(cA, cB).toFixed(2)
|
|
331
|
+
var distance = "".concat(linear_algebra_1.Vec3.distance(cA, cB).toFixed(2), " ").concat(o.unitLabel);
|
|
332
332
|
if (o.measureOnly)
|
|
333
333
|
return distance;
|
|
334
334
|
var label = bundleLabel(pair, o);
|
|
335
|
-
return o.condensed ? distance
|
|
335
|
+
return o.condensed ? "".concat(distance, " | ").concat(label) : "Distance ".concat(distance, "</br>").concat(label);
|
|
336
336
|
}
|
|
337
337
|
exports.distanceLabel = distanceLabel;
|
|
338
338
|
function angleLabel(triple, options) {
|
|
@@ -341,22 +341,22 @@ function angleLabel(triple, options) {
|
|
|
341
341
|
var _a = triple.loci.map(function (l) { return loci_1.Loci.getCenter(l); }), cA = _a[0], cB = _a[1], cC = _a[2];
|
|
342
342
|
var vAB = linear_algebra_1.Vec3.sub((0, linear_algebra_1.Vec3)(), cA, cB);
|
|
343
343
|
var vCB = linear_algebra_1.Vec3.sub((0, linear_algebra_1.Vec3)(), cC, cB);
|
|
344
|
-
var angle = (0, misc_1.radToDeg)(linear_algebra_1.Vec3.angle(vAB, vCB)).toFixed(2)
|
|
344
|
+
var angle = "".concat((0, misc_1.radToDeg)(linear_algebra_1.Vec3.angle(vAB, vCB)).toFixed(2), "\u00B0");
|
|
345
345
|
if (o.measureOnly)
|
|
346
346
|
return angle;
|
|
347
347
|
var label = bundleLabel(triple, o);
|
|
348
|
-
return o.condensed ? angle
|
|
348
|
+
return o.condensed ? "".concat(angle, " | ").concat(label) : "Angle ".concat(angle, "</br>").concat(label);
|
|
349
349
|
}
|
|
350
350
|
exports.angleLabel = angleLabel;
|
|
351
351
|
function dihedralLabel(quad, options) {
|
|
352
352
|
if (options === void 0) { options = {}; }
|
|
353
353
|
var o = (0, tslib_1.__assign)((0, tslib_1.__assign)((0, tslib_1.__assign)({}, exports.DefaultLabelOptions), { measureOnly: false }), options);
|
|
354
354
|
var _a = quad.loci.map(function (l) { return loci_1.Loci.getCenter(l); }), cA = _a[0], cB = _a[1], cC = _a[2], cD = _a[3];
|
|
355
|
-
var dihedral = (0, misc_1.radToDeg)(linear_algebra_1.Vec3.dihedralAngle(cA, cB, cC, cD)).toFixed(2)
|
|
355
|
+
var dihedral = "".concat((0, misc_1.radToDeg)(linear_algebra_1.Vec3.dihedralAngle(cA, cB, cC, cD)).toFixed(2), "\u00B0");
|
|
356
356
|
if (o.measureOnly)
|
|
357
357
|
return dihedral;
|
|
358
358
|
var label = bundleLabel(quad, o);
|
|
359
|
-
return o.condensed ? dihedral
|
|
359
|
+
return o.condensed ? "".concat(dihedral, " | ").concat(label) : "Dihedral ".concat(dihedral, "</br>").concat(label);
|
|
360
360
|
}
|
|
361
361
|
exports.dihedralLabel = dihedralLabel;
|
|
362
362
|
//# sourceMappingURL=label.js.map
|