molstar 2.3.7 → 2.3.8

package/lib/extensions/rcsb/validation-report/behavior.js

@@ -112,7 +112,7 @@ function geometryQualityLabel(loci) {
             }
             var summary_1 = [];
             issues_1.forEach(function (name) { return summary_1.push(name); });
-            return "Geometry Quality <small>(1 Atom)</small>: " + summary_1.join(', ');
+            return "Geometry Quality <small>(1 Atom)</small>: ".concat(summary_1.join(', '));
         }
         var hasValidationReport = false;
         var seen_1 = new Set();
@@ -149,15 +149,15 @@ function geometryQualityLabel(loci) {
         }
         if (!hasValidationReport)
             return;
-        var residueCount = "<small>(" + seen_1.size + " " + (seen_1.size > 1 ? 'Residues' : 'Residue') + ")</small>";
+        var residueCount = "<small>(".concat(seen_1.size, " ").concat(seen_1.size > 1 ? 'Residues' : 'Residue', ")</small>");
         if (cummulativeIssues_1.size === 0) {
-            return "Geometry Quality " + residueCount + ": no issues";
+            return "Geometry Quality ".concat(residueCount, ": no issues");
         }
         var summary_2 = [];
         cummulativeIssues_1.forEach(function (count, name) {
-            summary_2.push("" + name + (count > 1 ? " \u00D7 " + count : ''));
+            summary_2.push("".concat(name).concat(count > 1 ? " \u00D7 ".concat(count) : ''));
         });
-        return "Geometry Quality " + residueCount + ": " + summary_2.join(', ');
+        return "Geometry Quality ".concat(residueCount, ": ").concat(summary_2.join(', '));
     }
 }
 function densityFitLabel(loci) {
@@ -205,14 +205,14 @@ function densityFitLabel(loci) {
             return;
         var summary = [];
         if (rsrzSeen_1.size) {
-            var rsrzCount = "<small>(" + rsrzSeen_1.size + " " + (rsrzSeen_1.size > 1 ? 'Residues avg.' : 'Residue') + ")</small>";
+            var rsrzCount = "<small>(".concat(rsrzSeen_1.size, " ").concat(rsrzSeen_1.size > 1 ? 'Residues avg.' : 'Residue', ")</small>");
             var rsrzAvg = rsrzSum_1 / rsrzSeen_1.size;
-            summary.push("Real-Space R Z-score " + rsrzCount + ": " + rsrzAvg.toFixed(2));
+            summary.push("Real-Space R Z-score ".concat(rsrzCount, ": ").concat(rsrzAvg.toFixed(2)));
         }
         if (rsccSeen_1.size) {
-            var rsccCount = "<small>(" + rsccSeen_1.size + " " + (rsccSeen_1.size > 1 ? 'Residues avg.' : 'Residue') + ")</small>";
+            var rsccCount = "<small>(".concat(rsccSeen_1.size, " ").concat(rsccSeen_1.size > 1 ? 'Residues avg.' : 'Residue', ")</small>");
             var rsccAvg = rsccSum_1 / rsccSeen_1.size;
-            summary.push("Real-Space Correlation Coefficient " + rsccCount + ": " + rsccAvg.toFixed(2));
+            summary.push("Real-Space Correlation Coefficient ".concat(rsccCount, ": ").concat(rsccAvg.toFixed(2)));
         }
         if (summary.length) {
             return summary.join('</br>');
@@ -253,9 +253,9 @@ function randomCoilIndexLabel(loci) {
         }
         if (seen_3.size === 0)
             return;
-        var residueCount = "<small>(" + seen_3.size + " " + (seen_3.size > 1 ? 'Residues avg.' : 'Residue') + ")</small>";
+        var residueCount = "<small>(".concat(seen_3.size, " ").concat(seen_3.size > 1 ? 'Residues avg.' : 'Residue', ")</small>");
         var rciAvg = sum_1 / seen_3.size;
-        return "Random Coil Index " + residueCount + ": " + rciAvg.toFixed(2);
+        return "Random Coil Index ".concat(residueCount, ": ").concat(rciAvg.toFixed(2));
     }
 }
 //

package/lib/extensions/rcsb/validation-report/behavior.js.map

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package/lib/extensions/rcsb/validation-report/prop.js

@@ -33,7 +33,7 @@ var ValidationReport;
     ValidationReport.DefaultBaseUrl = '//ftp.rcsb.org/pub/pdb/validation_reports';
     function getEntryUrl(pdbId, baseUrl) {
         var id = pdbId.toLowerCase();
-        return baseUrl + "/" + id.substr(1, 2) + "/" + id + "/" + id + "_validation.xml.gz";
+        return "".concat(baseUrl, "/").concat(id.substr(1, 2), "/").concat(id, "/").concat(id, "_validation.xml.gz");
     }
     ValidationReport.getEntryUrl = getEntryUrl;
     function isApplicable(model) {
@@ -293,7 +293,7 @@ function ClashesBuilder(elementsCount) {
     var seen = new Map();
     return {
         add: function (element, id, magnitude, distance, isSymop) {
-            var hash = id + "|" + (isSymop ? 's' : '');
+            var hash = "".concat(id, "|").concat(isSymop ? 's' : '');
             var other = seen.get(hash);
             if (other !== undefined) {
                 aIndices[aIndices.length] = element;

package/lib/extensions/rcsb/validation-report/prop.js.map

@@ -1 +1 @@
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package/lib/extensions/rcsb/validation-report/representation.d.ts

@@ -24,7 +24,7 @@ export declare const IntraUnitClashParams: {
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -49,7 +49,7 @@ export declare const InterUnitClashParams: {
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -62,7 +62,7 @@ export declare const InterUnitClashParams: {
 export declare type InterUnitClashParams = typeof InterUnitClashParams;
 export declare function InterUnitClashVisual(materialId: number): ComplexVisual<InterUnitClashParams>;
 export declare const ClashesParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     visuals: PD.MultiSelect<"intra-clash" | "inter-clash">;
     linkCap: PD.BooleanParam;
     sizeFactor: PD.Numeric;
@@ -87,7 +87,7 @@ export declare const ClashesParams: {
 };
 export declare type ClashesParams = typeof ClashesParams;
 export declare function getClashesParams(ctx: ThemeRegistryContext, structure: Structure): {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     visuals: PD.MultiSelect<"intra-clash" | "inter-clash">;
     linkCap: PD.BooleanParam;
     sizeFactor: PD.Numeric;
@@ -113,7 +113,7 @@ export declare function getClashesParams(ctx: ThemeRegistryContext, structure: S
 export declare type ClashesRepresentation = StructureRepresentation<ClashesParams>;
 export declare function ClashesRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, ClashesParams>): ClashesRepresentation;
 export declare const ClashesRepresentationProvider: StructureRepresentationProvider<{
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     visuals: PD.MultiSelect<"intra-clash" | "inter-clash">;
     linkCap: PD.BooleanParam;
     sizeFactor: PD.Numeric;

package/lib/extensions/rcsb/validation-report/representation.js

@@ -74,7 +74,7 @@ function getIntraClashLabel(structure, unit, clashes, elements) {
     var mag = magnitude[idx].toFixed(2);
     var dist = distance[idx].toFixed(2);
     return [
-        "Clash id: " + id[idx] + " | Magnitude: " + mag + " \u212B | Distance: " + dist + " \u212B",
+        "Clash id: ".concat(id[idx], " | Magnitude: ").concat(mag, " \u212B | Distance: ").concat(dist, " \u212B"),
         bondLabel(Bond.Location(structure, unit, clashes.a[idx], structure, unit, clashes.b[idx]))
     ].join('</br>');
 }
@@ -171,7 +171,7 @@ function getInterClashLabel(structure, clashes, elements) {
     var mag = c.props.magnitude.toFixed(2);
     var dist = c.props.distance.toFixed(2);
     return [
-        "Clash id: " + c.props.id + " | Magnitude: " + mag + " \u212B | Distance: " + dist + " \u212B",
+        "Clash id: ".concat(c.props.id, " | Magnitude: ").concat(mag, " \u212B | Distance: ").concat(dist, " \u212B"),
         bondLabel(Bond.Location(structure, uA, c.indexA, structure, uB, c.indexB))
     ].join('</br>');
 }

package/lib/extensions/rcsb/validation-report/representation.js.map

@@ -1 +1 @@
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package/lib/mol-canvas3d/canvas3d.d.ts

@@ -98,13 +98,13 @@ export declare const Canvas3DParams: {
         selectStrength: number;
         markerPriority: number;
         xrayEdgeFalloff: number;
-        style: PD.NamedParams<PD.Normalize<unknown>, "flat"> | PD.NamedParams<PD.Normalize<unknown>, "metallic"> | PD.NamedParams<PD.Normalize<{
+        style: PD.NamedParams<PD.Normalize<{
             lightIntensity: any;
             ambientIntensity: any;
             metalness: any;
             roughness: any;
             reflectivity: any;
-        }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "matte"> | PD.NamedParams<PD.Normalize<unknown>, "glossy"> | PD.NamedParams<PD.Normalize<unknown>, "plastic">;
+        }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "matte"> | PD.NamedParams<PD.Normalize<unknown>, "flat"> | PD.NamedParams<PD.Normalize<unknown>, "glossy"> | PD.NamedParams<PD.Normalize<unknown>, "metallic"> | PD.NamedParams<PD.Normalize<unknown>, "plastic">;
         clip: PD.Normalize<{
             variant: any;
             objects: any;
@@ -244,13 +244,13 @@ export declare const DefaultCanvas3DParams: PD.Values<{
         selectStrength: number;
         markerPriority: number;
         xrayEdgeFalloff: number;
-        style: PD.NamedParams<PD.Normalize<unknown>, "flat"> | PD.NamedParams<PD.Normalize<unknown>, "metallic"> | PD.NamedParams<PD.Normalize<{
+        style: PD.NamedParams<PD.Normalize<{
             lightIntensity: any;
             ambientIntensity: any;
             metalness: any;
             roughness: any;
             reflectivity: any;
-        }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "matte"> | PD.NamedParams<PD.Normalize<unknown>, "glossy"> | PD.NamedParams<PD.Normalize<unknown>, "plastic">;
+        }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "matte"> | PD.NamedParams<PD.Normalize<unknown>, "flat"> | PD.NamedParams<PD.Normalize<unknown>, "glossy"> | PD.NamedParams<PD.Normalize<unknown>, "metallic"> | PD.NamedParams<PD.Normalize<unknown>, "plastic">;
         clip: PD.Normalize<{
             variant: any;
             objects: any;

package/lib/mol-canvas3d/canvas3d.js

@@ -441,9 +441,9 @@ var Canvas3D;
             console.log(webgl.stats);
             var _a = webgl.resources.getByteCounts(), texture = _a.texture, attribute = _a.attribute, elements = _a.elements;
             console.log({
-                texture: (texture / 1024 / 1024).toFixed(3) + " MiB",
-                attribute: (attribute / 1024 / 1024).toFixed(3) + " MiB",
-                elements: (elements / 1024 / 1024).toFixed(3) + " MiB",
+                texture: "".concat((texture / 1024 / 1024).toFixed(3), " MiB"),
+                attribute: "".concat((attribute / 1024 / 1024).toFixed(3), " MiB"),
+                elements: "".concat((elements / 1024 / 1024).toFixed(3), " MiB"),
             });
         }
         function add(repr) {

package/lib/mol-canvas3d/canvas3d.js.map

@@ -1 +1 @@
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package/lib/mol-canvas3d/helper/camera-helper.d.ts

@@ -11,7 +11,7 @@ import { MarkerAction } from '../../mol-util/marker-action';
 import { ParamDefinition as PD } from '../../mol-util/param-definition';
 import { Camera, ICamera } from '../camera';
 export declare const CameraHelperParams: {
-    axes: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
+    axes: PD.Mapped<PD.NamedParams<PD.Normalize<{
         alpha: number;
         ignoreLight: boolean;
         colorX: import("../../mol-util/color").Color;
@@ -23,7 +23,7 @@ export declare const CameraHelperParams: {
         flatShaded: boolean;
         xrayShaded: boolean;
         quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
-    }>, "on">>;
+    }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
 };
 export declare type CameraHelperParams = typeof CameraHelperParams;
 export declare type CameraHelperProps = PD.Values<CameraHelperParams>;

package/lib/mol-canvas3d/helper/handle-helper.js

@@ -154,7 +154,7 @@ export var HandleGroup = {
     // RotateObjectZ: 12,
 };
 function HandleLoci(handleHelper, groupId, instanceId) {
-    return DataLoci('handle', handleHelper, [{ groupId: groupId, instanceId: instanceId }], function (boundingSphere) { return handleHelper.getBoundingSphere(boundingSphere, instanceId); }, function () { return "Handle Helper | Group Id " + groupId + " | Instance Id " + instanceId; });
+    return DataLoci('handle', handleHelper, [{ groupId: groupId, instanceId: instanceId }], function (boundingSphere) { return handleHelper.getBoundingSphere(boundingSphere, instanceId); }, function () { return "Handle Helper | Group Id ".concat(groupId, " | Instance Id ").concat(instanceId); });
 }
 export function isHandleLoci(x) {
     return x.kind === 'data-loci' && x.tag === 'handle';