npm - molstar - Versions diffs - 2.3.7 → 2.3.8 - Mend

molstar 2.3.7 → 2.3.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1415) hide show

package/lib/mol-plugin/behavior/static/state.js.map CHANGED Viewed

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1	+ 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package/lib/mol-plugin/commands.d.ts CHANGED Viewed

@@ -259,13 +259,13 @@ export declare const PluginCommands: {
                     selectStrength: number;
                     markerPriority: number;
                     xrayEdgeFalloff: number;
-                    style: import("../mol-util/param-definition").ParamDefinition.NamedParams<import("../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "flat"> | import("../mol-util/param-definition").ParamDefinition.NamedParams<import("../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "metallic"> | import("../mol-util/param-definition").ParamDefinition.NamedParams<import("../mol-util/param-definition").ParamDefinition.Normalize<{
+                    style: import("../mol-util/param-definition").ParamDefinition.NamedParams<import("../mol-util/param-definition").ParamDefinition.Normalize<{
                         lightIntensity: any;
                         ambientIntensity: any;
                         metalness: any;
                         roughness: any;
                         reflectivity: any;
-                    }>, "custom"> | import("../mol-util/param-definition").ParamDefinition.NamedParams<import("../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "matte"> | import("../mol-util/param-definition").ParamDefinition.NamedParams<import("../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "glossy"> | import("../mol-util/param-definition").ParamDefinition.NamedParams<import("../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "plastic">;
+                    }>, "custom"> | import("../mol-util/param-definition").ParamDefinition.NamedParams<import("../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "matte"> | import("../mol-util/param-definition").ParamDefinition.NamedParams<import("../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "flat"> | import("../mol-util/param-definition").ParamDefinition.NamedParams<import("../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "glossy"> | import("../mol-util/param-definition").ParamDefinition.NamedParams<import("../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "metallic"> | import("../mol-util/param-definition").ParamDefinition.NamedParams<import("../mol-util/param-definition").ParamDefinition.Normalize<unknown>, "plastic">;
                     clip: import("../mol-util/param-definition").ParamDefinition.Normalize<{
                         variant: any;
                         objects: any;

package/lib/mol-plugin/context.js CHANGED Viewed

@@ -201,8 +201,7 @@ var PluginContext = /** @class */ (function () {
                 var pickPadding = (_c = this.config.get(PluginConfig.General.PickPadding)) !== null && _c !== void 0 ? _c : 1;
                 var enableWboit = this.config.get(PluginConfig.General.EnableWboit) || false;
                 var preferWebGl1 = this.config.get(PluginConfig.General.PreferWebGl1) || false;
-                this.canvas3dContext = Canvas3DContext.fromCanvas(canvas, { antialias: antialias, preserveDrawingBuffer: preserveDrawingBuffer, pixelScale: pixelScale, pickScale: pickScale, enableWboit: enableWboit, preferWebGl1: preferWebGl1 });
-                this.canvas3dContext = Canvas3DContext.fromCanvas(canvas, { antialias: antialias, preserveDrawingBuffer: preserveDrawingBuffer, pixelScale: pixelScale, pickScale: pickScale, pickPadding: pickPadding, enableWboit: enableWboit });
+                this.canvas3dContext = Canvas3DContext.fromCanvas(canvas, { antialias: antialias, preserveDrawingBuffer: preserveDrawingBuffer, pixelScale: pixelScale, pickScale: pickScale, pickPadding: pickPadding, enableWboit: enableWboit, preferWebGl1: preferWebGl1 });
             }
             this.canvas3d = Canvas3D.create(this.canvas3dContext);
             this.canvas3dInit.next(true);
@@ -423,7 +422,7 @@ var PluginContext = /** @class */ (function () {
                         return [4 /*yield*/, this.initBehaviors()];
                     case 1:
                         _a.sent();
-                        this.log.message("Mol* Plugin " + PLUGIN_VERSION + " [" + PLUGIN_VERSION_DATE.toLocaleString() + "]");
+                        this.log.message("Mol* Plugin ".concat(PLUGIN_VERSION, " [").concat(PLUGIN_VERSION_DATE.toLocaleString(), "]"));
                         if (!isProductionMode)
                             this.log.message("Development mode enabled");
                         if (isDebugMode)

package/lib/mol-plugin/context.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-plugin/layout.d.ts CHANGED Viewed

@@ -12,10 +12,10 @@ export declare const PluginLayoutStateParams: {
     isExpanded: PD.BooleanParam;
     showControls: PD.BooleanParam;
     regionState: PD.Group<PD.Normalize<{
-        left: "full" | "collapsed" | "hidden";
-        top: "full" | "hidden";
-        right: "full" | "hidden";
-        bottom: "full" | "hidden";
+        left: "hidden" | "full" | "collapsed";
+        top: "hidden" | "full";
+        right: "hidden" | "full";
+        bottom: "hidden" | "full";
     }>>;
     controlsDisplay: PD.Value<PluginLayoutControlsDisplay>;
 };

package/lib/mol-plugin/util/viewport-screenshot.d.ts CHANGED Viewed

@@ -26,7 +26,7 @@ declare class ViewportScreenshotHelper extends PluginComponent {
             height: number;
         }>, "custom"> | PD.NamedParams<PD.Normalize<unknown>, "viewport"> | PD.NamedParams<PD.Normalize<unknown>, "hd"> | PD.NamedParams<PD.Normalize<unknown>, "full-hd"> | PD.NamedParams<PD.Normalize<unknown>, "ultra-hd">>;
         transparent: PD.BooleanParam;
-        axes: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
+        axes: PD.Mapped<PD.NamedParams<PD.Normalize<{
             alpha: number;
             ignoreLight: boolean;
             colorX: Color;
@@ -38,7 +38,7 @@ declare class ViewportScreenshotHelper extends PluginComponent {
             flatShaded: boolean;
             xrayShaded: boolean;
             quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
-        }>, "on">>;
+        }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
     };
     readonly behaviors: {
         values: import("rxjs").BehaviorSubject<PD.Values<{
@@ -47,7 +47,7 @@ declare class ViewportScreenshotHelper extends PluginComponent {
                 height: number;
             }>, "custom">>;
             transparent: PD.BooleanParam;
-            axes: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
+            axes: PD.Mapped<PD.NamedParams<PD.Normalize<{
                 alpha: number;
                 ignoreLight: boolean;
                 colorX: Color;
@@ -59,7 +59,7 @@ declare class ViewportScreenshotHelper extends PluginComponent {
                 flatShaded: boolean;
                 xrayShaded: boolean;
                 quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
-            }>, "on">>;
+            }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
         }>>;
         cropParams: import("rxjs").BehaviorSubject<{
             auto: boolean;
@@ -76,7 +76,7 @@ declare class ViewportScreenshotHelper extends PluginComponent {
             height: number;
         }>, "custom">>;
         transparent: PD.BooleanParam;
-        axes: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "off"> | PD.NamedParams<PD.Normalize<{
+        axes: PD.Mapped<PD.NamedParams<PD.Normalize<{
             alpha: number;
             ignoreLight: boolean;
             colorX: Color;
@@ -88,7 +88,7 @@ declare class ViewportScreenshotHelper extends PluginComponent {
             flatShaded: boolean;
             xrayShaded: boolean;
             quality: "custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest";
-        }>, "on">>;
+        }>, "on"> | PD.NamedParams<PD.Normalize<unknown>, "off">>;
     }>;
     get cropParams(): {
         auto: boolean;

package/lib/mol-plugin/util/viewport-screenshot.js CHANGED Viewed

@@ -173,7 +173,7 @@ var ViewportScreenshotHelper = /** @class */ (function (_super) {
         var uniqueIds = new Set();
         models.forEach(function (m) { return uniqueIds.add(m.entryId.toUpperCase()); });
         var idString = SetUtils.toArray(uniqueIds).join('-');
-        return "" + (idString || 'molstar-image') + extension;
+        return "".concat(idString || 'molstar-image').concat(extension);
     };
     ViewportScreenshotHelper.prototype.resetCrop = function () {
         this.behaviors.relativeCrop.next({ x: 0, y: 0, width: 1, height: 1 });

package/lib/mol-plugin/util/viewport-screenshot.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-plugin/version.js CHANGED Viewed

@@ -1,2 +1,2 @@
-export var PLUGIN_VERSION = '2.3.7';
-export var PLUGIN_VERSION_DATE = new Date(typeof __MOLSTAR_DEBUG_TIMESTAMP__ !== 'undefined' ? __MOLSTAR_DEBUG_TIMESTAMP__ : 1637033365076);
+export var PLUGIN_VERSION = '2.3.8';
+export var PLUGIN_VERSION_DATE = new Date(typeof __MOLSTAR_DEBUG_TIMESTAMP__ !== 'undefined' ? __MOLSTAR_DEBUG_TIMESTAMP__ : 1637454521080);

package/lib/mol-plugin-state/actions/file.js CHANGED Viewed

@@ -15,7 +15,7 @@ export var OpenFiles = StateAction.build({
     params: function (a, ctx) {
         var _a = ctx.dataFormats, extensions = _a.extensions, options = _a.options;
         return {
-            files: PD.FileList({ accept: Array.from(extensions.values()).map(function (e) { return "." + e; }).join(',') + ',.gz,.zip', multiple: true }),
+            files: PD.FileList({ accept: Array.from(extensions.values()).map(function (e) { return ".".concat(e); }).join(',') + ',.gz,.zip', multiple: true }),
             format: PD.MappedStatic('auto', {
                 auto: PD.EmptyGroup(),
                 specific: PD.Select(options[0][0], options)
@@ -57,7 +57,7 @@ export var OpenFiles = StateAction.build({
                                             ? plugin.dataFormats.auto(info, (_b = data.cell) === null || _b === void 0 ? void 0 : _b.obj)
                                             : plugin.dataFormats.get(params.format.params);
                                         if (!provider) {
-                                            plugin.log.warn("OpenFiles: could not find data provider for '" + info.name + "." + info.ext + "'");
+                                            plugin.log.warn("OpenFiles: could not find data provider for '".concat(info.name, ".").concat(info.ext, "'"));
                                             return [3 /*break*/, 8];
                                         }
                                         return [4 /*yield*/, provider.parse(plugin, data)];
@@ -115,7 +115,7 @@ export var DownloadFile = StateAction.build({
                                         _b.trys.push([0, 5, , 6]);
                                         provider = plugin.dataFormats.get(params.format);
                                         if (!provider) {
-                                            plugin.log.warn("DownloadFile: could not find data provider for '" + params.format + "'");
+                                            plugin.log.warn("DownloadFile: could not find data provider for '".concat(params.format, "'"));
                                             return [2 /*return*/];
                                         }
                                         return [4 /*yield*/, plugin.builders.data.download({ url: params.url, isBinary: params.isBinary })];

package/lib/mol-plugin-state/actions/file.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"file.js","sourceRoot":"","sources":["../../../src/mol-plugin-state/actions/file.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAGH,OAAO,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAC;AAC9C,OAAO,EAAE,IAAI,EAAE,MAAM,gBAAgB,CAAC;AACtC,OAAO,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AACvD,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,iCAAiC,CAAC;AACxE,OAAO,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAE/C,MAAM,CAAC,IAAM,SAAS,GAAG,WAAW,CAAC,KAAK,CAAC;IACvC,OAAO,EAAE,EAAE,IAAI,EAAE,YAAY,EAAE,WAAW,EAAE,8DAA8D,EAAE;IAC5G,IAAI,EAAE,iBAAiB,CAAC,IAAI;IAC5B,MAAM,EAAE,UAAC,CAAC,EAAE,GAAkB;QACpB,IAAA,KAA0B,GAAG,CAAC,WAAW,EAAvC,UAAU,gBAAA,EAAE,OAAO,aAAoB,CAAC;QAChD,OAAO;YACH,KAAK,EAAE,EAAE,CAAC,QAAQ,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,IAAI,CAAC,UAAU,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,~~MAAI~~,~~CAAG~~,EAAP,CAAO,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,WAAW,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;YACzH,MAAM,EAAE,EAAE,CAAC,YAAY,CAAC,MAAM,EAAE;gBAC5B,IAAI,EAAE,EAAE,CAAC,UAAU,EAAE;gBACrB,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,OAAO,CAAC;aAC9C,CAAC;YACF,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,WAAW,EAAE,qBAAqB,EAAE,CAAC;SACpE,CAAC;IACN,CAAC;CACJ,CAAC,CAAC,UAAC,EAAiB,EAAE,MAAqB;QAAtC,MAAM,YAAA,EAAE,KAAK,WAAA;IAA8B,OAAA,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,UAAM,OAAO;;;;oBACpF,MAAM,CAAC,SAAS,CAAC,MAAM,CAAC,gBAAgB,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;oBAEtD,qBAAM,KAAK,CAAC,WAAW,CAAC;;;;;;wCACpB,IAAI,MAAM,CAAC,KAAK,KAAK,IAAI,EAAE;4CACvB,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,qBAAqB,CAAC,CAAC;4CACxC,sBAAO;yCACV;8CAC8B,EAAZ,KAAA,MAAM,CAAC,KAAK;;;6CAAZ,CAAA,cAAY,CAAA;wCAApB,IAAI;;;;wCAED,IAAI,GAAG,WAAW,CAAC,IAAI,CAAC,IAAK,CAAC,CAAC;wCAC/B,QAAQ,GAAG,MAAM,CAAC,WAAW,CAAC,gBAAgB,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;wCAClD,qBAAM,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,IAAI,MAAA,EAAE,QAAQ,UAAA,EAAE,CAAC,EAAA;;wCAAhE,IAAI,GAAK,CAAA,SAAuD,CAAA,KAA5D;wCACN,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,KAAK,MAAM;4CAC1C,CAAC,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,EAAE,MAAA,IAAI,CAAC,IAAI,0CAAE,GAAI,CAAC;4CAChD,CAAC,CAAC,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;wCAEnD,IAAI,CAAC,QAAQ,EAAE;4CACX,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,~~kDAAgD~~,IAAI,CAAC,IAAI,~~SAAI~~,IAAI,CAAC,GAAG,MAAG,CAAC,CAAC;4CAC1F,wBAAS;yCACZ;wCAGc,qBAAM,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,EAAA;;wCAA3C,MAAM,GAAG,SAAkC;6CAC7C,MAAM,CAAC,OAAO,EAAd,wBAAc;wCACd,qBAAM,CAAA,MAAA,QAAQ,CAAC,OAAO,+CAAhB,QAAQ,EAAW,MAAM,EAAE,MAAM,CAAC,CAAA,EAAA;;wCAAxC,SAAwC,CAAC;;;;;wCAG7C,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,GAAC,CAAC,CAAC;;;wCApBT,IAAY,CAAA;;;;;6BAuBlC,CAAC,CAAC,YAAY,CAAC,OAAO,CAAC,EAAA;;oBA5BxB,SA4BwB,CAAC;;;;SAC5B,CAAC;AAhC+C,CAgC/C,CAAC,CAAC;AAEJ,MAAM,CAAC,IAAM,YAAY,GAAG,WAAW,CAAC,KAAK,CAAC;IAC1C,OAAO,EAAE,EAAE,IAAI,EAAE,eAAe,EAAE,WAAW,EAAE,mCAAmC,EAAE;IACpF,IAAI,EAAE,iBAAiB,CAAC,IAAI;IAC5B,MAAM,EAAE,UAAC,CAAC,EAAE,GAAkB;QAClB,IAAA,OAAO,GAAK,GAAG,CAAC,WAAW,QAApB,CAAqB;QACpC,OAAO;YACH,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC;YACf,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,OAAO,CAAC;YACzC,QAAQ,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC;YAC3B,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,WAAW,EAAE,qBAAqB,EAAE,CAAC;SACpE,CAAC;IACN,CAAC;CACJ,CAAC,CAAC,UAAC,EAAiB,EAAE,MAAqB;QAAtC,MAAM,YAAA,EAAE,KAAK,WAAA;IAA8B,OAAA,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,UAAM,OAAO;;;;oBACpF,MAAM,CAAC,SAAS,CAAC,MAAM,CAAC,gBAAgB,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;oBAEtD,qBAAM,KAAK,CAAC,WAAW,CAAC;;;;;;;wCAEV,QAAQ,GAAG,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;wCACvD,IAAI,CAAC,QAAQ,EAAE;4CACX,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,~~qDAAmD~~,MAAM,CAAC,MAAM,MAAG,CAAC,CAAC;4CACrF,sBAAO;yCACV;wCAEY,qBAAM,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,GAAG,EAAE,MAAM,CAAC,GAAG,EAAE,QAAQ,EAAE,MAAM,CAAC,QAAQ,EAAE,CAAC,EAAA;;wCAA1F,IAAI,GAAG,SAAmF;wCACjF,qBAAM,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,EAAA;;wCAA3C,MAAM,GAAG,SAAkC;6CAC7C,MAAM,CAAC,OAAO,EAAd,wBAAc;wCACd,qBAAM,CAAA,MAAA,QAAQ,CAAC,OAAO,+CAAhB,QAAQ,EAAW,MAAM,EAAE,MAAM,CAAC,CAAA,EAAA;;wCAAxC,SAAwC,CAAC;;;;;wCAG7C,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,GAAC,CAAC,CAAC;;;;;6BAE3B,CAAC,CAAC,YAAY,CAAC,OAAO,CAAC,EAAA;;oBAhBxB,SAgBwB,CAAC;;;;SAC5B,CAAC;AApB+C,CAoB/C,CAAC,CAAC"}
1	+ {"version":3,"file":"file.js","sourceRoot":"","sources":["../../../src/mol-plugin-state/actions/file.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAGH,OAAO,EAAE,WAAW,EAAE,MAAM,iBAAiB,CAAC;AAC9C,OAAO,EAAE,IAAI,EAAE,MAAM,gBAAgB,CAAC;AACtC,OAAO,EAAE,WAAW,EAAE,MAAM,0BAA0B,CAAC;AACvD,OAAO,EAAE,eAAe,IAAI,EAAE,EAAE,MAAM,iCAAiC,CAAC;AACxE,OAAO,EAAE,iBAAiB,EAAE,MAAM,YAAY,CAAC;AAE/C,MAAM,CAAC,IAAM,SAAS,GAAG,WAAW,CAAC,KAAK,CAAC;IACvC,OAAO,EAAE,EAAE,IAAI,EAAE,YAAY,EAAE,WAAW,EAAE,8DAA8D,EAAE;IAC5G,IAAI,EAAE,iBAAiB,CAAC,IAAI;IAC5B,MAAM,EAAE,UAAC,CAAC,EAAE,GAAkB;QACpB,IAAA,KAA0B,GAAG,CAAC,WAAW,EAAvC,UAAU,gBAAA,EAAE,OAAO,aAAoB,CAAC;QAChD,OAAO;YACH,KAAK,EAAE,EAAE,CAAC,QAAQ,CAAC,EAAE,MAAM,EAAE,KAAK,CAAC,IAAI,CAAC,UAAU,CAAC,MAAM,EAAE,CAAC,CAAC,GAAG,CAAC,UAAA,CAAC,IAAI,OAAA,WAAI,CAAC,CAAE,EAAP,CAAO,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,WAAW,EAAE,QAAQ,EAAE,IAAI,EAAE,CAAC;YACzH,MAAM,EAAE,EAAE,CAAC,YAAY,CAAC,MAAM,EAAE;gBAC5B,IAAI,EAAE,EAAE,CAAC,UAAU,EAAE;gBACrB,QAAQ,EAAE,EAAE,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,OAAO,CAAC;aAC9C,CAAC;YACF,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,WAAW,EAAE,qBAAqB,EAAE,CAAC;SACpE,CAAC;IACN,CAAC;CACJ,CAAC,CAAC,UAAC,EAAiB,EAAE,MAAqB;QAAtC,MAAM,YAAA,EAAE,KAAK,WAAA;IAA8B,OAAA,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,UAAM,OAAO;;;;oBACpF,MAAM,CAAC,SAAS,CAAC,MAAM,CAAC,gBAAgB,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;oBAEtD,qBAAM,KAAK,CAAC,WAAW,CAAC;;;;;;wCACpB,IAAI,MAAM,CAAC,KAAK,KAAK,IAAI,EAAE;4CACvB,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,qBAAqB,CAAC,CAAC;4CACxC,sBAAO;yCACV;8CAC8B,EAAZ,KAAA,MAAM,CAAC,KAAK;;;6CAAZ,CAAA,cAAY,CAAA;wCAApB,IAAI;;;;wCAED,IAAI,GAAG,WAAW,CAAC,IAAI,CAAC,IAAK,CAAC,CAAC;wCAC/B,QAAQ,GAAG,MAAM,CAAC,WAAW,CAAC,gBAAgB,CAAC,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC;wCAClD,qBAAM,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,IAAI,MAAA,EAAE,QAAQ,UAAA,EAAE,CAAC,EAAA;;wCAAhE,IAAI,GAAK,CAAA,SAAuD,CAAA,KAA5D;wCACN,QAAQ,GAAG,MAAM,CAAC,MAAM,CAAC,IAAI,KAAK,MAAM;4CAC1C,CAAC,CAAC,MAAM,CAAC,WAAW,CAAC,IAAI,CAAC,IAAI,EAAE,MAAA,IAAI,CAAC,IAAI,0CAAE,GAAI,CAAC;4CAChD,CAAC,CAAC,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;wCAEnD,IAAI,CAAC,QAAQ,EAAE;4CACX,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,uDAAgD,IAAI,CAAC,IAAI,cAAI,IAAI,CAAC,GAAG,MAAG,CAAC,CAAC;4CAC1F,wBAAS;yCACZ;wCAGc,qBAAM,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,EAAA;;wCAA3C,MAAM,GAAG,SAAkC;6CAC7C,MAAM,CAAC,OAAO,EAAd,wBAAc;wCACd,qBAAM,CAAA,MAAA,QAAQ,CAAC,OAAO,+CAAhB,QAAQ,EAAW,MAAM,EAAE,MAAM,CAAC,CAAA,EAAA;;wCAAxC,SAAwC,CAAC;;;;;wCAG7C,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,GAAC,CAAC,CAAC;;;wCApBT,IAAY,CAAA;;;;;6BAuBlC,CAAC,CAAC,YAAY,CAAC,OAAO,CAAC,EAAA;;oBA5BxB,SA4BwB,CAAC;;;;SAC5B,CAAC;AAhC+C,CAgC/C,CAAC,CAAC;AAEJ,MAAM,CAAC,IAAM,YAAY,GAAG,WAAW,CAAC,KAAK,CAAC;IAC1C,OAAO,EAAE,EAAE,IAAI,EAAE,eAAe,EAAE,WAAW,EAAE,mCAAmC,EAAE;IACpF,IAAI,EAAE,iBAAiB,CAAC,IAAI;IAC5B,MAAM,EAAE,UAAC,CAAC,EAAE,GAAkB;QAClB,IAAA,OAAO,GAAK,GAAG,CAAC,WAAW,QAApB,CAAqB;QACpC,OAAO;YACH,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC;YACf,MAAM,EAAE,EAAE,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,OAAO,CAAC;YACzC,QAAQ,EAAE,EAAE,CAAC,OAAO,CAAC,KAAK,CAAC;YAC3B,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,WAAW,EAAE,qBAAqB,EAAE,CAAC;SACpE,CAAC;IACN,CAAC;CACJ,CAAC,CAAC,UAAC,EAAiB,EAAE,MAAqB;QAAtC,MAAM,YAAA,EAAE,KAAK,WAAA;IAA8B,OAAA,IAAI,CAAC,MAAM,CAAC,YAAY,EAAE,UAAM,OAAO;;;;oBACpF,MAAM,CAAC,SAAS,CAAC,MAAM,CAAC,gBAAgB,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;oBAEtD,qBAAM,KAAK,CAAC,WAAW,CAAC;;;;;;;wCAEV,QAAQ,GAAG,MAAM,CAAC,WAAW,CAAC,GAAG,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC;wCACvD,IAAI,CAAC,QAAQ,EAAE;4CACX,MAAM,CAAC,GAAG,CAAC,IAAI,CAAC,0DAAmD,MAAM,CAAC,MAAM,MAAG,CAAC,CAAC;4CACrF,sBAAO;yCACV;wCAEY,qBAAM,MAAM,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,GAAG,EAAE,MAAM,CAAC,GAAG,EAAE,QAAQ,EAAE,MAAM,CAAC,QAAQ,EAAE,CAAC,EAAA;;wCAA1F,IAAI,GAAG,SAAmF;wCACjF,qBAAM,QAAQ,CAAC,KAAK,CAAC,MAAM,EAAE,IAAI,CAAC,EAAA;;wCAA3C,MAAM,GAAG,SAAkC;6CAC7C,MAAM,CAAC,OAAO,EAAd,wBAAc;wCACd,qBAAM,CAAA,MAAA,QAAQ,CAAC,OAAO,+CAAhB,QAAQ,EAAW,MAAM,EAAE,MAAM,CAAC,CAAA,EAAA;;wCAAxC,SAAwC,CAAC;;;;;wCAG7C,MAAM,CAAC,GAAG,CAAC,KAAK,CAAC,GAAC,CAAC,CAAC;;;;;6BAE3B,CAAC,CAAC,YAAY,CAAC,OAAO,CAAC,EAAA;;oBAhBxB,SAgBwB,CAAC;;;;SAC5B,CAAC;AApB+C,CAoB/C,CAAC,CAAC"}

package/lib/mol-plugin-state/actions/structure.d.ts CHANGED Viewed

@@ -9,10 +9,10 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
 import { PluginStateObject } from '../objects';
 export declare const PdbDownloadProvider: {
     rcsb: PD.Group<PD.Normalize<{
-        encoding: "bcif" | "cif";
+        encoding: "cif" | "bcif";
     }>>;
     pdbe: PD.Group<PD.Normalize<{
-        variant: "updated-bcif" | "updated" | "updtaed-bcif" | "archival";
+        variant: "updated" | "updated-bcif" | "updtaed-bcif" | "archival";
     }>>;
 };
 export declare type PdbDownloadProvider = keyof typeof PdbDownloadProvider;

package/lib/mol-plugin-state/actions/structure.js CHANGED Viewed

@@ -88,35 +88,35 @@ var DownloadStructure = StateAction.build({
                         case 'pdb':
                             downloadParams = src.params.provider.server.name === 'pdbe'
                                 ? src.params.provider.server.params.variant === 'updated'
-                                    ? getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/static/entry/" + id.toLowerCase() + "_updated.cif"; }, function (id) { return "PDBe: " + id + " (updated cif)"; }, false)
+                                    ? getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/static/entry/".concat(id.toLowerCase(), "_updated.cif"); }, function (id) { return "PDBe: ".concat(id, " (updated cif)"); }, false)
                                     : src.params.provider.server.params.variant === 'updated-bcif'
-                                        ? getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/entry-files/download/" + id.toLowerCase() + ".bcif"; }, function (id) { return "PDBe: " + id + " (updated cif)"; }, true)
-                                        : getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/static/entry/" + id.toLowerCase() + ".cif"; }, function (id) { return "PDBe: " + id + " (cif)"; }, false)
+                                        ? getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/entry-files/download/".concat(id.toLowerCase(), ".bcif"); }, function (id) { return "PDBe: ".concat(id, " (updated cif)"); }, true)
+                                        : getDownloadParams(src.params.provider.id, function (id) { return "https://www.ebi.ac.uk/pdbe/static/entry/".concat(id.toLowerCase(), ".cif"); }, function (id) { return "PDBe: ".concat(id, " (cif)"); }, false)
                                 : src.params.provider.server.params.encoding === 'cif'
-                                    ? getDownloadParams(src.params.provider.id, function (id) { return "https://files.rcsb.org/download/" + id.toUpperCase() + ".cif"; }, function (id) { return "RCSB: " + id + " (cif)"; }, false)
-                                    : getDownloadParams(src.params.provider.id, function (id) { return "https://models.rcsb.org/" + id.toUpperCase() + ".bcif"; }, function (id) { return "RCSB: " + id + " (bcif)"; }, true);
+                                    ? getDownloadParams(src.params.provider.id, function (id) { return "https://files.rcsb.org/download/".concat(id.toUpperCase(), ".cif"); }, function (id) { return "RCSB: ".concat(id, " (cif)"); }, false)
+                                    : getDownloadParams(src.params.provider.id, function (id) { return "https://models.rcsb.org/".concat(id.toUpperCase(), ".bcif"); }, function (id) { return "RCSB: ".concat(id, " (bcif)"); }, true);
                             asTrajectory = !!src.params.options.asTrajectory;
                             break;
                         case 'pdb-dev':
                             downloadParams = getDownloadParams(src.params.provider.id, function (id) {
-                                var nId = id.toUpperCase().startsWith('PDBDEV_') ? id : "PDBDEV_" + id.padStart(8, '0');
+                                var nId = id.toUpperCase().startsWith('PDBDEV_') ? id : "PDBDEV_".concat(id.padStart(8, '0'));
                                 return src.params.provider.encoding === 'bcif'
-                                    ? "https://pdb-dev.wwpdb.org/bcif/" + nId.toUpperCase() + ".bcif"
-                                    : "https://pdb-dev.wwpdb.org/cif/" + nId.toUpperCase() + ".cif";
-                            }, function (id) { return id.toUpperCase().startsWith('PDBDEV_') ? id : "PDBDEV_" + id.padStart(8, '0'); }, src.params.provider.encoding === 'bcif');
+                                    ? "https://pdb-dev.wwpdb.org/bcif/".concat(nId.toUpperCase(), ".bcif")
+                                    : "https://pdb-dev.wwpdb.org/cif/".concat(nId.toUpperCase(), ".cif");
+                            }, function (id) { return id.toUpperCase().startsWith('PDBDEV_') ? id : "PDBDEV_".concat(id.padStart(8, '0')); }, src.params.provider.encoding === 'bcif');
                             asTrajectory = !!src.params.options.asTrajectory;
                             break;
                         case 'swissmodel':
-                            downloadParams = getDownloadParams(src.params.id, function (id) { return "https://swissmodel.expasy.org/repository/uniprot/" + id.toUpperCase() + ".pdb"; }, function (id) { return "SWISS-MODEL: " + id; }, false);
+                            downloadParams = getDownloadParams(src.params.id, function (id) { return "https://swissmodel.expasy.org/repository/uniprot/".concat(id.toUpperCase(), ".pdb"); }, function (id) { return "SWISS-MODEL: ".concat(id); }, false);
                             asTrajectory = !!src.params.options.asTrajectory;
                             format = 'pdb';
                             break;
                         case 'pubchem':
-                            downloadParams = getDownloadParams(src.params.id, function (id) { return "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/CID/" + id.trim() + "/record/SDF/?record_type=3d"; }, function (id) { return "PubChem: " + id; }, false);
+                            downloadParams = getDownloadParams(src.params.id, function (id) { return "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/CID/".concat(id.trim(), "/record/SDF/?record_type=3d"); }, function (id) { return "PubChem: ".concat(id); }, false);
                             asTrajectory = !!src.params.options.asTrajectory;
                             format = 'mol';
                             break;
-                        default: throw new Error(src.name + " not supported.");
+                        default: throw new Error("".concat(src.name, " not supported."));
                     }
                     representationPreset = params.source.params.options.representation || PresetStructureRepresentations.auto.id;
                     showUnitcell = representationPreset !== PresetStructureRepresentations.empty.id;

package/lib/mol-plugin-state/actions/structure.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/mol-plugin-state/actions/volume.js CHANGED Viewed

@@ -72,41 +72,41 @@ var DownloadDensity = StateAction.build({
                         case 'pdb-xray':
                             downloadParams = src.params.provider.server === 'pdbe' ? {
                                 url: Asset.Url(src.params.type === '2fofc'
-                                    ? "http://www.ebi.ac.uk/pdbe/coordinates/files/" + src.params.provider.id.toLowerCase() + ".ccp4"
-                                    : "http://www.ebi.ac.uk/pdbe/coordinates/files/" + src.params.provider.id.toLowerCase() + "_diff.ccp4"),
+                                    ? "http://www.ebi.ac.uk/pdbe/coordinates/files/".concat(src.params.provider.id.toLowerCase(), ".ccp4")
+                                    : "http://www.ebi.ac.uk/pdbe/coordinates/files/".concat(src.params.provider.id.toLowerCase(), "_diff.ccp4")),
                                 isBinary: true,
-                                label: "PDBe X-ray map: " + src.params.provider.id
+                                label: "PDBe X-ray map: ".concat(src.params.provider.id)
                             } : {
                                 url: Asset.Url(src.params.type === '2fofc'
-                                    ? "https://edmaps.rcsb.org/maps/" + src.params.provider.id.toLowerCase() + "_2fofc.dsn6"
-                                    : "https://edmaps.rcsb.org/maps/" + src.params.provider.id.toLowerCase() + "_fofc.dsn6"),
+                                    ? "https://edmaps.rcsb.org/maps/".concat(src.params.provider.id.toLowerCase(), "_2fofc.dsn6")
+                                    : "https://edmaps.rcsb.org/maps/".concat(src.params.provider.id.toLowerCase(), "_fofc.dsn6")),
                                 isBinary: true,
-                                label: "RCSB X-ray map: " + src.params.provider.id
+                                label: "RCSB X-ray map: ".concat(src.params.provider.id)
                             };
                             break;
                         case 'pdb-emd-ds':
                             downloadParams = src.params.provider.server === 'pdbe' ? {
-                                url: Asset.Url("https://www.ebi.ac.uk/pdbe/densities/emd/" + src.params.provider.id.toLowerCase() + "/cell?detail=" + src.params.detail),
+                                url: Asset.Url("https://www.ebi.ac.uk/pdbe/densities/emd/".concat(src.params.provider.id.toLowerCase(), "/cell?detail=").concat(src.params.detail)),
                                 isBinary: true,
-                                label: "PDBe EMD Density Server: " + src.params.provider.id
+                                label: "PDBe EMD Density Server: ".concat(src.params.provider.id)
                             } : {
-                                url: Asset.Url("https://maps.rcsb.org/em/" + src.params.provider.id.toLowerCase() + "/cell?detail=" + src.params.detail),
+                                url: Asset.Url("https://maps.rcsb.org/em/".concat(src.params.provider.id.toLowerCase(), "/cell?detail=").concat(src.params.detail)),
                                 isBinary: true,
-                                label: "RCSB PDB EMD Density Server: " + src.params.provider.id
+                                label: "RCSB PDB EMD Density Server: ".concat(src.params.provider.id)
                             };
                             break;
                         case 'pdb-xray-ds':
                             downloadParams = src.params.provider.server === 'pdbe' ? {
-                                url: Asset.Url("https://www.ebi.ac.uk/pdbe/densities/x-ray/" + src.params.provider.id.toLowerCase() + "/cell?detail=" + src.params.detail),
+                                url: Asset.Url("https://www.ebi.ac.uk/pdbe/densities/x-ray/".concat(src.params.provider.id.toLowerCase(), "/cell?detail=").concat(src.params.detail)),
                                 isBinary: true,
-                                label: "PDBe X-ray Density Server: " + src.params.provider.id
+                                label: "PDBe X-ray Density Server: ".concat(src.params.provider.id)
                             } : {
-                                url: Asset.Url("https://maps.rcsb.org/x-ray/" + src.params.provider.id.toLowerCase() + "/cell?detail=" + src.params.detail),
+                                url: Asset.Url("https://maps.rcsb.org/x-ray/".concat(src.params.provider.id.toLowerCase(), "/cell?detail=").concat(src.params.detail)),
                                 isBinary: true,
-                                label: "RCSB PDB X-ray Density Server: " + src.params.provider.id
+                                label: "RCSB PDB X-ray Density Server: ".concat(src.params.provider.id)
                             };
                             break;
-                        default: throw new Error(src.name + " not supported.");
+                        default: throw new Error("".concat(src.name, " not supported."));
                     }
                     return [4 /*yield*/, plugin.builders.data.download(downloadParams)];
                 case 1:
@@ -128,7 +128,7 @@ var DownloadDensity = StateAction.build({
                             entryId = src.params.provider.id;
                             provider = plugin.dataFormats.get('dscif');
                             break;
-                        default: throw new Error(src.name + " not supported.");
+                        default: throw new Error("".concat(src.name, " not supported."));
                     }
                     if (!provider) {
                         plugin.log.warn('DownloadDensity: Format provider not found.');