molstar 2.3.7 → 2.3.8

package/lib/commonjs/mol-model-formats/structure/basic/atomic.js

@@ -122,9 +122,9 @@ function createChainOperatorMappingAndSubstituteNames(hierarchy, format) {
         });
         var suffix = entries.suffix.value(i);
         var label = entries.label_asym_id.value(i);
-        labelMap.set("" + label + suffix, { name: label, operator: operator });
+        labelMap.set("".concat(label).concat(suffix), { name: label, operator: operator });
         var auth = entries.auth_asym_id.value(i);
-        authMap.set("" + auth + suffix, auth);
+        authMap.set("".concat(auth).concat(suffix), auth);
     }
     var _a = hierarchy.chains, label_asym_id = _a.label_asym_id, auth_asym_id = _a.auth_asym_id;
     var mappedLabel = new Array(label_asym_id.rowCount);

package/lib/commonjs/mol-model-formats/structure/basic/atomic.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-model-formats/structure/basic/properties.js

@@ -14,7 +14,7 @@ var db_1 = require("../../../mol-data/db");
 function getMissingResidues(data) {
     var map = new Map();
     var getKey = function (model_num, asym_id, seq_id) {
-        return model_num + "|" + asym_id + "|" + seq_id;
+        return "".concat(model_num, "|").concat(asym_id, "|").concat(seq_id);
     };
     var c = data.pdbx_unobs_or_zero_occ_residues;
     for (var i = 0, il = c._rowCount; i < il; ++i) {
@@ -64,7 +64,7 @@ function getSaccharideComponentMap(data) {
                     map.set(comp_id.value(i), saccharideComp);
                 }
                 else {
-                    console.warn("Unknown SNFG name '" + snfgName + "'");
+                    console.warn("Unknown SNFG name '".concat(snfgName, "'"));
                 }
             }
         }

package/lib/commonjs/mol-model-formats/structure/basic/properties.js.map

@@ -1 +1 @@
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+{"version":3,"file":"properties.js","sourceRoot":"","sources":["../../../../../src/mol-model-formats/structure/basic/properties.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;AAIH,kEAAsH;AACtH,4FAAkM;AAClM,qDAAqD;AAErD,2CAA6C;AAE7C,SAAS,kBAAkB,CAAC,IAAe;IACvC,IAAM,GAAG,GAAG,IAAI,GAAG,EAA0B,CAAC;IAC9C,IAAM,MAAM,GAAG,UAAC,SAAiB,EAAE,OAAe,EAAE,MAAc;QAC9D,OAAO,UAAG,SAAS,cAAI,OAAO,cAAI,MAAM,CAAE,CAAC;IAC/C,CAAC,CAAC;IAEF,IAAM,CAAC,GAAG,IAAI,CAAC,+BAA+B,CAAC;IAC/C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,CAAC,CAAC,SAAS,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QAC3C,IAAM,GAAG,GAAG,MAAM,CAAC,CAAC,CAAC,aAAa,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,aAAa,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;QAChG,GAAG,CAAC,GAAG,CAAC,GAAG,EAAE,EAAE,YAAY,EAAE,CAAC,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,cAAc,EAAE,CAAC,CAAC,cAAc,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC;KACtG;IAED,OAAO;QACH,GAAG,EAAE,UAAC,SAAiB,EAAE,OAAe,EAAE,MAAc;YACpD,OAAO,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,SAAS,EAAE,OAAO,EAAE,MAAM,CAAC,CAAC,CAAC;QACvD,CAAC;QACD,GAAG,EAAE,UAAC,SAAiB,EAAE,OAAe,EAAE,MAAc;YACpD,OAAO,GAAG,CAAC,GAAG,CAAC,MAAM,CAAC,SAAS,EAAE,OAAO,EAAE,MAAM,CAAC,CAAC,CAAC;QACvD,CAAC;QACD,IAAI,EAAE,GAAG,CAAC,IAAI;KACjB,CAAC;AACN,CAAC;AAED,SAAS,uBAAuB,CAAC,IAAe;IAC5C,IAAM,GAAG,GAAG,IAAI,GAAG,EAA6B,CAAC;IAEjD,IAAI,IAAI,CAAC,SAAS,CAAC,SAAS,GAAG,CAAC,EAAE;QACtB,IAAA,EAAE,GAAK,IAAI,CAAC,SAAS,GAAnB,CAAoB;QAC9B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YAC3C,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,UAAK,CAAC,MAAM,CAAC,IAAI,CAAC,SAAS,EAAE,CAAC,CAAC,CAAC,CAAC;SACzD;KACJ;SAAM;QACH,IAAM,WAAW,GAAG,uBAAuB,CAAC,IAAI,CAAC,CAAC;QAClD,WAAW,CAAC,OAAO,CAAC,UAAA,CAAC;YACjB,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,IAAA,mCAA2B,EAAC,CAAC,CAAC,CAAC,CAAC;QAC/C,CAAC,CAAC,CAAC;KACN;IACD,OAAO,GAAG,CAAC;AACf,CAAC;AAED,SAAS,yBAAyB,CAAC,IAAe;IAC9C,IAAM,GAAG,GAAG,IAAI,GAAG,EAA+B,CAAC;IAEnD,IAAI,IAAI,CAAC,yBAAyB,CAAC,SAAS,GAAG,CAAC,EAAE;QAC9C,yDAAyD;QACzD,yEAAyE;QACzE,mDAAmD;QAC7C,IAAA,KAAgC,IAAI,CAAC,yBAAyB,EAA5D,OAAO,aAAA,EAAE,IAAI,UAAA,EAAE,UAAU,gBAAmC,CAAC;QACrE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YAChD,IAAI,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,0BAA0B;gBAC5C,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,kBAAkB,CAAC,8CAA8C;cACrF;gBACE,IAAM,QAAQ,GAAG,UAAU,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;gBACrC,IAAM,cAAc,GAAG,8BAAkB,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;gBACxD,IAAI,cAAc,EAAE;oBAChB,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,cAAc,CAAC,CAAC;iBAC7C;qBAAM;oBACH,OAAO,CAAC,IAAI,CAAC,6BAAsB,QAAQ,MAAG,CAAC,CAAC;iBACnD;aACJ;SACJ;KACJ;IAED,IAAI,IAAI,CAAC,SAAS,CAAC,SAAS,GAAG,CAAC,EAAE;QACxB,IAAA,KAAe,IAAI,CAAC,SAAS,EAA3B,EAAE,QAAA,EAAE,IAAI,UAAmB,CAAC;QACpC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YAC3C,IAAM,GAAG,GAAG,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;YACxB,IAAI,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC;gBAAE,SAAS;YAC3B,IAAM,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;YAC5B,IAAI,+BAAmB,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE;gBAC9B,GAAG,CAAC,GAAG,CAAC,GAAG,EAAE,+BAAmB,CAAC,GAAG,CAAC,GAAG,CAAE,CAAC,CAAC;aAC/C;iBAAM,IAAI,IAAA,uBAAe,EAAC,KAAK,EAAE,GAAG,CAAC,uBAA4B,EAAE;gBAChE,GAAG,CAAC,GAAG,CAAC,GAAG,EAAE,sCAA0B,CAAC,CAAC;aAC5C;SACJ;KACJ;SAAM;QACH,IAAM,aAAW,GAAG,uBAAuB,CAAC,IAAI,CAAC,CAAC;QAClD,+BAAmB,CAAC,OAAO,CAAC,UAAC,CAAC,EAAE,CAAC;YAC7B,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,aAAW,CAAC,GAAG,CAAC,CAAC,CAAC;gBAAE,GAAG,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;QACzD,CAAC,CAAC,CAAC;KACN;IACD,OAAO,GAAG,CAAC;AACf,CAAC;AAED,IAAM,uBAAuB,GAAG,IAAA,kBAAQ,EAAC,UAAC,IAAe;IACrD,IAAM,WAAW,GAAG,IAAI,GAAG,EAAU,CAAC;IAChC,IAAA,KAAkC,IAAI,CAAC,SAAS,EAA9C,aAAa,mBAAA,EAAE,YAAY,kBAAmB,CAAC;IACvD,IAAM,OAAO,GAAG,aAAa,CAAC,SAAS,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,YAAY,CAAC;IACvE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QAChD,WAAW,CAAC,GAAG,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;KACrC;IACD,OAAO,WAAW,CAAC;AACvB,CAAC,CAAC,CAAC;AAGH,SAAS,gBAAgB,CAAC,IAAe;IACrC,IAAM,GAAG,GAAG,IAAI,GAAG,EAAsB,CAAC;IAEpC,IAAA,KAAmD,IAAI,CAAC,SAAS,EAA/D,aAAa,mBAAA,EAAE,YAAY,kBAAA,EAAE,eAAe,qBAAmB,CAAC;IACxE,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,aAAa,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QACtD,IAAM,EAAE,GAAG,aAAa,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAClC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE;YACd,GAAG,CAAC,GAAG,CAAC,EAAE,EAAE;gBACR,EAAE,IAAA;gBACF,OAAO,EAAE,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC;gBAC9B,SAAS,EAAE,eAAe,CAAC,KAAK,CAAC,CAAC,CAAC;aACtC,CAAC,CAAC;SACN;KACJ;IAED,IAAI,IAAI,CAAC,WAAW,CAAC,SAAS,GAAG,CAAC,EAAE;QAC1B,IAAA,KAAoB,IAAI,CAAC,WAAW,EAAlC,EAAE,QAAA,EAAE,SAAS,eAAqB,CAAC;QAC3C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YAC3C,IAAM,GAAG,GAAG,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;YACxB,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE;gBACf,GAAG,CAAC,GAAG,CAAC,GAAG,EAAE;oBACT,EAAE,EAAE,GAAG;oBACP,OAAO,EAAE,EAAE;oBACX,SAAS,EAAE,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC;iBAChC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package/lib/commonjs/mol-model-formats/structure/basic/schema.d.ts

@@ -69,8 +69,8 @@ export declare const BasicSchema: {
     };
     entity_poly: {
         entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        nstd_linkage: import("../../../mol-data/db/column").Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
-        nstd_monomer: import("../../../mol-data/db/column").Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        nstd_linkage: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
+        nstd_monomer: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
         type: import("../../../mol-data/db/column").Column.Schema.Aliased<"other" | "polypeptide(D)" | "polypeptide(L)" | "polydeoxyribonucleotide" | "polyribonucleotide" | "polydeoxyribonucleotide/polyribonucleotide hybrid" | "cyclic-pseudo-peptide" | "peptide nucleic acid">;
         pdbx_strand_id: import("../../../mol-data/db/column").Column.Schema.List<string>;
         pdbx_seq_one_letter_code: import("../../../mol-data/db/column").Column.Schema.Str;
@@ -79,7 +79,7 @@ export declare const BasicSchema: {
     };
     entity_poly_seq: {
         entity_id: import("../../../mol-data/db/column").Column.Schema.Str;
-        hetero: import("../../../mol-data/db/column").Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        hetero: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
         mon_id: import("../../../mol-data/db/column").Column.Schema.Str;
         num: import("../../../mol-data/db/column").Column.Schema.Int;
     };
@@ -88,11 +88,11 @@ export declare const BasicSchema: {
         type: import("../../../mol-data/db/column").Column.Schema.Aliased<"oligosaccharide">;
     };
     chem_comp: {
-        type: import("../../../mol-data/db/column").Column.Schema.Aliased<"D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "other" | "Ion" | "Lipid">;
+        type: import("../../../mol-data/db/column").Column.Schema.Aliased<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "Ion" | "Lipid">;
         formula: import("../../../mol-data/db/column").Column.Schema.Str;
         formula_weight: import("../../../mol-data/db/column").Column.Schema.Float;
         id: import("../../../mol-data/db/column").Column.Schema.Str;
-        mon_nstd_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        mon_nstd_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
         name: import("../../../mol-data/db/column").Column.Schema.Str;
         pdbx_synonyms: import("../../../mol-data/db/column").Column.Schema.List<string>;
     };
@@ -156,7 +156,7 @@ export declare const BasicSchema: {
     pdbx_unobs_or_zero_occ_residues: {
         id: import("../../../mol-data/db/column").Column.Schema.Int;
         polymer_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"N" | "Y">;
-        occupancy_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"0" | "1">;
+        occupancy_flag: import("../../../mol-data/db/column").Column.Schema.Aliased<"1" | "0">;
         PDB_model_num: import("../../../mol-data/db/column").Column.Schema.Int;
         auth_asym_id: import("../../../mol-data/db/column").Column.Schema.Str;
         auth_comp_id: import("../../../mol-data/db/column").Column.Schema.Str;

package/lib/commonjs/mol-model-formats/structure/common/component.d.ts

@@ -19,29 +19,29 @@ export declare class ComponentBuilder {
     private getType;
     has(compId: string): boolean;
     get(compId: string): Table.Row<Pick<{
-        type: Column.Schema.Aliased<"D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "other" | "Ion" | "Lipid">;
+        type: Column.Schema.Aliased<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "Ion" | "Lipid">;
         formula: Column.Schema.Str;
         formula_weight: Column.Schema.Float;
         id: Column.Schema.Str;
-        mon_nstd_flag: Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        mon_nstd_flag: Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
         name: Column.Schema.Str;
         pdbx_synonyms: Column.Schema.List<string>;
-    }, "id" | "type" | "name">> | undefined;
+    }, "name" | "id" | "type">> | undefined;
     add(compId: string, index: number): Table.Row<Pick<{
-        type: Column.Schema.Aliased<"D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "other" | "Ion" | "Lipid">;
+        type: Column.Schema.Aliased<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "Ion" | "Lipid">;
         formula: Column.Schema.Str;
         formula_weight: Column.Schema.Float;
         id: Column.Schema.Str;
-        mon_nstd_flag: Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        mon_nstd_flag: Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
         name: Column.Schema.Str;
         pdbx_synonyms: Column.Schema.List<string>;
-    }, "id" | "type" | "name">>;
+    }, "name" | "id" | "type">>;
     getChemCompTable(): Table<{
-        type: Column.Schema.Aliased<"D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "other" | "Ion" | "Lipid">;
+        type: Column.Schema.Aliased<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "Ion" | "Lipid">;
         formula: Column.Schema.Str;
         formula_weight: Column.Schema.Float;
         id: Column.Schema.Str;
-        mon_nstd_flag: Column.Schema.Aliased<"no" | "n" | "yes" | "y">;
+        mon_nstd_flag: Column.Schema.Aliased<"y" | "yes" | "no" | "n">;
         name: Column.Schema.Str;
         pdbx_synonyms: Column.Schema.List<string>;
     }>;

package/lib/commonjs/mol-model-formats/structure/common/entity.js

@@ -22,7 +22,7 @@ var EntityBuilder = /** @class */ (function () {
     }
     EntityBuilder.prototype.set = function (type, description) {
         this.count += 1;
-        this.ids.push("" + this.count);
+        this.ids.push("".concat(this.count));
         this.types.push(type);
         this.descriptions.push([description]);
     };
@@ -30,7 +30,7 @@ var EntityBuilder = /** @class */ (function () {
         if (moleculeType === 2 /* Water */) {
             if (this.waterId === undefined) {
                 this.set('water', (options === null || options === void 0 ? void 0 : options.customName) || 'Water');
-                this.waterId = "" + this.count;
+                this.waterId = "".concat(this.count);
             }
             return this.waterId;
         }
@@ -40,8 +40,8 @@ var EntityBuilder = /** @class */ (function () {
             }
             else {
                 if (!this.chainMap.has(chainId)) {
-                    this.set('polymer', (options === null || options === void 0 ? void 0 : options.customName) || "Polymer " + (this.chainMap.size + 1));
-                    this.chainMap.set(chainId, "" + this.count);
+                    this.set('polymer', (options === null || options === void 0 ? void 0 : options.customName) || "Polymer ".concat(this.chainMap.size + 1));
+                    this.chainMap.set(chainId, "".concat(this.count));
                 }
                 return this.chainMap.get(chainId);
             }
@@ -49,7 +49,7 @@ var EntityBuilder = /** @class */ (function () {
         else {
             if (!this.heteroMap.has(compId)) {
                 this.set('non-polymer', (options === null || options === void 0 ? void 0 : options.customName) || this.namesMap.get(compId) || compId);
-                this.heteroMap.set(compId, "" + this.count);
+                this.heteroMap.set(compId, "".concat(this.count));
             }
             return this.heteroMap.get(compId);
         }
@@ -66,7 +66,7 @@ var EntityBuilder = /** @class */ (function () {
             var _a = compounds[i], chains = _a.chains, description = _a.description;
             this.set('polymer', description);
             for (var j = 0, jl = chains.length; j < jl; ++j) {
-                this.compoundsMap.set(chains[j], "" + this.count);
+                this.compoundsMap.set(chains[j], "".concat(this.count));
             }
         }
     };

package/lib/commonjs/mol-model-formats/structure/common/entity.js.map

@@ -1 +1 @@
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+{"version":3,"file":"entity.js","sourceRoot":"","sources":["../../../../../src/mol-model-formats/structure/common/entity.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,kEAAmF;AACnF,2CAAqD;AACrD,0CAA8C;AAO9C;IAAA;QACY,UAAK,GAAG,CAAC,CAAA;QACT,QAAG,GAAa,EAAE,CAAA;QAClB,UAAK,GAAiB,EAAE,CAAA;QACxB,iBAAY,GAAe,EAAE,CAAA;QAE7B,iBAAY,GAAG,IAAI,GAAG,EAAkB,CAAA;QACxC,aAAQ,GAAG,IAAI,GAAG,EAAkB,CAAA;QACpC,cAAS,GAAG,IAAI,GAAG,EAAkB,CAAA;QACrC,aAAQ,GAAG,IAAI,GAAG,EAAkB,CAAA;IAyDhD,CAAC;IAtDW,2BAAG,GAAX,UAAY,IAAgB,EAAE,WAAmB;QAC7C,IAAI,CAAC,KAAK,IAAI,CAAC,CAAC;QAChB,IAAI,CAAC,GAAG,CAAC,IAAI,CAAC,UAAG,IAAI,CAAC,KAAK,CAAE,CAAC,CAAC;QAC/B,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC;QACtB,IAAI,CAAC,YAAY,CAAC,IAAI,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC;IAC1C,CAAC;IAED,mCAAW,GAAX,UAAY,MAAc,EAAE,YAA0B,EAAE,OAAe,EAAE,OAAiC;QACtG,IAAI,YAAY,kBAAuB,EAAE;YACrC,IAAI,IAAI,CAAC,OAAO,KAAK,SAAS,EAAE;gBAC5B,IAAI,CAAC,GAAG,CAAC,OAAO,EAAE,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,UAAU,KAAI,OAAO,CAAC,CAAC;gBAClD,IAAI,CAAC,OAAO,GAAG,UAAG,IAAI,CAAC,KAAK,CAAE,CAAC;aAClC;YACD,OAAO,IAAI,CAAC,OAAO,CAAC;SACvB;aAAM,IAAI,IAAA,iBAAS,EAAC,YAAY,CAAC,EAAE;YAChC,IAAI,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE;gBAChC,OAAO,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,OAAO,CAAE,CAAC;aAC1C;iBAAM;gBACH,IAAI,CAAC,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAC,EAAE;oBAC7B,IAAI,CAAC,GAAG,CAAC,SAAS,EAAE,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,UAAU,KAAI,kBAAW,IAAI,CAAC,QAAQ,CAAC,IAAI,GAAG,CAAC,CAAE,CAAC,CAAC;oBAChF,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,OAAO,EAAE,UAAG,IAAI,CAAC,KAAK,CAAE,CAAC,CAAC;iBAC/C;gBACD,OAAO,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,OAAO,CAAE,CAAC;aACtC;SACJ;aAAM;YACH,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,MAAM,CAAC,EAAE;gBAC7B,IAAI,CAAC,GAAG,CAAC,aAAa,EAAE,CAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,UAAU,KAAI,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,MAAM,CAAC,IAAI,MAAM,CAAC,CAAC;gBACpF,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,MAAM,EAAE,UAAG,IAAI,CAAC,KAAK,CAAE,CAAC,CAAC;aAC/C;YACD,OAAO,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,MAAM,CAAE,CAAC;SACtC;IACL,CAAC;IAED,sCAAc,GAAd;QACI,OAAO,UAAK,CAAC,gBAAgB,CAAC,oBAAW,CAAC,MAAM,EAAE;YAC9C,EAAE,EAAE,WAAM,CAAC,aAAa,CAAC,IAAI,CAAC,GAAG,CAAC;YAClC,IAAI,EAAE,WAAM,CAAC,kBAAkB,CAAC,IAAI,CAAC,KAAK,CAAC;YAC3C,gBAAgB,EAAE,WAAM,CAAC,iBAAiB,CAAC,IAAI,CAAC,YAAY,CAAC;SAChE,EAAE,IAAI,CAAC,KAAK,CAAC,CAAC;IACnB,CAAC;IAED,oCAAY,GAAZ,UAAa,SAA2B;QACpC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,SAAS,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;YAC1C,IAAA,KAA0B,SAAS,CAAC,CAAC,CAAC,EAApC,MAAM,YAAA,EAAE,WAAW,iBAAiB,CAAC;YAC7C,IAAI,CAAC,GAAG,CAAC,SAAS,EAAE,WAAW,CAAC,CAAC;YACjC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,MAAM,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;gBAC7C,IAAI,CAAC,YAAY,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,UAAG,IAAI,CAAC,KAAK,CAAE,CAAC,CAAC;aACrD;SACJ;IACL,CAAC;IAED,gCAAQ,GAAR,UAAS,KAAyB;QAAlC,iBAEC;QADG,KAAK,CAAC,OAAO,CAAC,UAAA,CAAC,IAAI,OAAA,KAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC,EAA7B,CAA6B,CAAC,CAAC;IACtD,CAAC;IACL,oBAAC;AAAD,CAAC,AAlED,IAkEC;AAlEY,sCAAa"}

package/lib/commonjs/mol-model-formats/structure/pdb/assembly.js

@@ -54,7 +54,7 @@ function parseRemark350(lines, lineStart, lineEnd) {
         var line = getLine(i);
         if (line.substr(11, 12) === 'BIOMOLECULE:') {
             var id = line.substr(23).trim();
-            var details = "Biomolecule " + id;
+            var details = "Biomolecule ".concat(id);
             line = getLine(i + 1);
             if (line.substr(11, 30) !== 'APPLY THE FOLLOWING TO CHAINS:') {
                 i++;
@@ -90,7 +90,7 @@ function parseRemark350(lines, lineStart, lineEnd) {
         }
         else if (line.substr(11, 33) === 'APPLYING THE FOLLOWING TO CHAINS:') {
             // variant in older PDB format version
-            current = PdbAssembly("" + asmId, "Biomolecule " + asmId);
+            current = PdbAssembly("".concat(asmId), "Biomolecule ".concat(asmId));
             assemblies.push(current);
             asmId += 1;
             group = { chains: [], operators: [] };
@@ -147,9 +147,9 @@ function parseRemark350(lines, lineStart, lineEnd) {
                 };
                 for (var i = 0; i < 3; i++) {
                     for (var j = 0; j < 3; j++) {
-                        row["matrix[" + (i + 1) + "][" + (j + 1) + "]"] = '' + linear_algebra_1.Mat4.getValue(oper.matrix, i, j);
+                        row["matrix[".concat(i + 1, "][").concat(j + 1, "]")] = '' + linear_algebra_1.Mat4.getValue(oper.matrix, i, j);
                     }
-                    row["vector[" + (i + 1) + "]"] = '' + linear_algebra_1.Mat4.getValue(oper.matrix, i, 3);
+                    row["vector[".concat(i + 1, "]")] = '' + linear_algebra_1.Mat4.getValue(oper.matrix, i, 3);
                 }
                 pdbx_struct_oper_list_rows.push(row);
             }
@@ -163,13 +163,13 @@ function parseRemark350(lines, lineStart, lineEnd) {
     };
     var _loop_1 = function (i) {
         var _loop_2 = function (j) {
-            var k_1 = "matrix[" + (i + 1) + "][" + (j + 1) + "]";
+            var k_1 = "matrix[".concat(i + 1, "][").concat(j + 1, "]");
             pdbx_struct_oper_list[k_1] = cif_1.CifField.ofStrings(pdbx_struct_oper_list_rows.map(function (r) { return r[k_1]; }));
         };
         for (var j = 0; j < 3; j++) {
             _loop_2(j);
         }
-        var k = "vector[" + (i + 1) + "]";
+        var k = "vector[".concat(i + 1, "]");
         pdbx_struct_oper_list[k] = cif_1.CifField.ofStrings(pdbx_struct_oper_list_rows.map(function (r) { return r[k]; }));
     };
     for (var i = 0; i < 3; i++) {
@@ -212,9 +212,9 @@ function parseMtrix(lines, lineStart, lineEnd) {
         };
         for (var i = 0; i < 3; i++) {
             for (var j = 0; j < 3; j++) {
-                row["matrix[" + (i + 1) + "][" + (j + 1) + "]"] = '' + linear_algebra_1.Mat4.getValue(oper, i, j);
+                row["matrix[".concat(i + 1, "][").concat(j + 1, "]")] = '' + linear_algebra_1.Mat4.getValue(oper, i, j);
             }
-            row["vector[" + (i + 1) + "]"] = '' + linear_algebra_1.Mat4.getValue(oper, i, 3);
+            row["vector[".concat(i + 1, "]")] = '' + linear_algebra_1.Mat4.getValue(oper, i, 3);
         }
         struct_ncs_oper_rows.push(row);
     }
@@ -225,13 +225,13 @@ function parseMtrix(lines, lineStart, lineEnd) {
     };
     var _loop_3 = function (i) {
         var _loop_4 = function (j) {
-            var k_2 = "matrix[" + (i + 1) + "][" + (j + 1) + "]";
+            var k_2 = "matrix[".concat(i + 1, "][").concat(j + 1, "]");
             struct_ncs_oper[k_2] = cif_1.CifField.ofStrings(struct_ncs_oper_rows.map(function (r) { return r[k_2]; }));
         };
         for (var j = 0; j < 3; j++) {
             _loop_4(j);
         }
-        var k = "vector[" + (i + 1) + "]";
+        var k = "vector[".concat(i + 1, "]");
         struct_ncs_oper[k] = cif_1.CifField.ofStrings(struct_ncs_oper_rows.map(function (r) { return r[k]; }));
     };
     for (var i = 0; i < 3; i++) {

package/lib/commonjs/mol-model-formats/structure/pdb/assembly.js.map

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package/lib/commonjs/mol-model-formats/structure/pdb/conect.js

@@ -44,7 +44,7 @@ function parseConect(lines, lineStart, lineEnd, sites) {
             // as double/triple bonds, e.g. CONECT 1529 1528 1528 is a double bond
             if (bondIndex[idxB] !== undefined)
                 continue;
-            id.push("covale" + k);
+            id.push("covale".concat(k));
             conn_type_id.push('covale');
             ptnr1_label_asym_id.push(sites.label_asym_id.str(idxA));
             ptnr1_auth_seq_id.push(sites.auth_seq_id.int(idxA));

package/lib/commonjs/mol-model-formats/structure/pdb/conect.js.map

@@ -1 +1 @@
-{"version":3,"file":"conect.js","sourceRoot":"","sources":["../../../../../src/mol-model-formats/structure/pdb/conect.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,kDAAmE;AAInE,SAAgB,WAAW,CAAC,KAAa,EAAE,SAAiB,EAAE,OAAe,EAAE,KAA4D;IACvI,IAAM,KAAK,GAA4B,EAAE,CAAC;IAC1C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,KAAK,CAAC,EAAG,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QAClD,KAAK,CAAC,KAAK,CAAC,EAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;KAC/B;IAED,IAAM,OAAO,GAAG,UAAC,CAAS,IAAK,OAAA,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,EAApE,CAAoE,CAAC;IAEpG,IAAM,EAAE,GAAa,EAAE,CAAC;IACxB,IAAM,YAAY,GAAa,EAAE,CAAC;IAElC,IAAM,mBAAmB,GAAa,EAAE,CAAC;IACzC,IAAM,kBAAkB,GAAa,EAAE,CAAC;IACxC,IAAM,iBAAiB,GAAa,EAAE,CAAC;IACvC,IAAM,mBAAmB,GAAa,EAAE,CAAC;IAEzC,IAAM,mBAAmB,GAAa,EAAE,CAAC;IACzC,IAAM,kBAAkB,GAAa,EAAE,CAAC;IACxC,IAAM,iBAAiB,GAAa,EAAE,CAAC;IACvC,IAAM,mBAAmB,GAAa,EAAE,CAAC;IAEzC,IAAM,GAAG,GAAG,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,CAAC;IAE7B,IAAI,CAAC,GAAG,CAAC,CAAC;IAEV,KAAK,IAAI,CAAC,GAAG,SAAS,EAAE,CAAC,GAAG,OAAO,EAAE,CAAC,EAAE,EAAE;QACtC,IAAM,IAAI,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC;QACxB,IAAM,IAAI,GAAG,KAAK,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;QAEhD,IAAM,SAAS,GAA0B,EAAE,CAAC;QAE5C,IAAI,IAAI,KAAK,SAAS;YAAE,SAAS;QAEjC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,EAAE;YACxB,IAAM,GAAG,GAAG,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;YAC7C,IAAI,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC;gBAAE,SAAS;YAEhC,IAAM,IAAI,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC;YACxB,IAAI,IAAI,KAAK,SAAS;gBAAE,SAAS;YACjC,IAAI,IAAI,GAAG,IAAI;gBAAE,SAAS;YAE1B,sEAAsE;YACtE,sEAAsE;YACtE,IAAI,SAAS,CAAC,IAAI,CAAC,KAAK,SAAS;gBAAE,SAAS;YAE5C,EAAE,CAAC,IAAI,CAAC,WAAS,CAAG,CAAC,CAAC;YACtB,YAAY,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;YAE5B,mBAAmB,CAAC,IAAI,CAAC,KAAK,CAAC,aAAc,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YACzD,iBAAiB,CAAC,IAAI,CAAC,KAAK,CAAC,WAAY,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YACrD,kBAAkB,CAAC,IAAI,CAAC,KAAK,CAAC,YAAa,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YACvD,mBAAmB,CAAC,IAAI,CAAC,KAAK,CAAC,aAAc,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YAEzD,mBAAmB,CAAC,IAAI,CAAC,KAAK,CAAC,aAAc,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YACzD,iBAAiB,CAAC,IAAI,CAAC,KAAK,CAAC,WAAY,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YACrD,kBAAkB,CAAC,IAAI,CAAC,KAAK,CAAC,YAAa,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YACvD,mBAAmB,CAAC,IAAI,CAAC,KAAK,CAAC,aAAc,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YAEzD,CAAC,IAAI,CAAC,CAAC;SACV;KACJ;IAED,IAAM,WAAW,GAA6D;QAC1E,EAAE,EAAE,cAAQ,CAAC,SAAS,CAAC,EAAE,CAAC;QAC1B,YAAY,EAAE,cAAQ,CAAC,SAAS,CAAC,YAAY,CAAC;QAE9C,mBAAmB,EAAE,cAAQ,CAAC,SAAS,CAAC,mBAAmB,CAAC;QAC5D,iBAAiB,EAAE,cAAQ,CAAC,SAAS,CAAC,iBAAiB,CAAC;QACxD,kBAAkB,EAAE,cAAQ,CAAC,SAAS,CAAC,kBAAkB,CAAC;QAC1D,mBAAmB,EAAE,cAAQ,CAAC,SAAS,CAAC,mBAAmB,CAAC;QAE5D,mBAAmB,EAAE,cAAQ,CAAC,SAAS,CAAC,mBAAmB,CAAC;QAC5D,kBAAkB,EAAE,cAAQ,CAAC,SAAS,CAAC,kBAAkB,CAAC;QAC1D,iBAAiB,EAAE,cAAQ,CAAC,SAAS,CAAC,iBAAiB,CAAC;QACxD,mBAAmB,EAAE,cAAQ,CAAC,SAAS,CAAC,mBAAmB,CAAC;KAC/D,CAAC;IAEF,OAAO,iBAAW,CAAC,QAAQ,CAAC,aAAa,EAAE,WAAW,CAAC,CAAC;AAC5D,CAAC;AA9ED,kCA8EC"}
+{"version":3,"file":"conect.js","sourceRoot":"","sources":["../../../../../src/mol-model-formats/structure/pdb/conect.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,kDAAmE;AAInE,SAAgB,WAAW,CAAC,KAAa,EAAE,SAAiB,EAAE,OAAe,EAAE,KAA4D;IACvI,IAAM,KAAK,GAA4B,EAAE,CAAC;IAC1C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,KAAK,CAAC,EAAG,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QAClD,KAAK,CAAC,KAAK,CAAC,EAAG,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;KAC/B;IAED,IAAM,OAAO,GAAG,UAAC,CAAS,IAAK,OAAA,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,EAApE,CAAoE,CAAC;IAEpG,IAAM,EAAE,GAAa,EAAE,CAAC;IACxB,IAAM,YAAY,GAAa,EAAE,CAAC;IAElC,IAAM,mBAAmB,GAAa,EAAE,CAAC;IACzC,IAAM,kBAAkB,GAAa,EAAE,CAAC;IACxC,IAAM,iBAAiB,GAAa,EAAE,CAAC;IACvC,IAAM,mBAAmB,GAAa,EAAE,CAAC;IAEzC,IAAM,mBAAmB,GAAa,EAAE,CAAC;IACzC,IAAM,kBAAkB,GAAa,EAAE,CAAC;IACxC,IAAM,iBAAiB,GAAa,EAAE,CAAC;IACvC,IAAM,mBAAmB,GAAa,EAAE,CAAC;IAEzC,IAAM,GAAG,GAAG,CAAC,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,EAAE,CAAC,CAAC;IAE7B,IAAI,CAAC,GAAG,CAAC,CAAC;IAEV,KAAK,IAAI,CAAC,GAAG,SAAS,EAAE,CAAC,GAAG,OAAO,EAAE,CAAC,EAAE,EAAE;QACtC,IAAM,IAAI,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC;QACxB,IAAM,IAAI,GAAG,KAAK,CAAC,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC,CAAC;QAEhD,IAAM,SAAS,GAA0B,EAAE,CAAC;QAE5C,IAAI,IAAI,KAAK,SAAS;YAAE,SAAS;QAEjC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,EAAE,CAAC,EAAE;YACxB,IAAM,GAAG,GAAG,QAAQ,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC,CAAC;YAC7C,IAAI,MAAM,CAAC,KAAK,CAAC,GAAG,CAAC;gBAAE,SAAS;YAEhC,IAAM,IAAI,GAAG,KAAK,CAAC,GAAG,CAAC,CAAC;YACxB,IAAI,IAAI,KAAK,SAAS;gBAAE,SAAS;YACjC,IAAI,IAAI,GAAG,IAAI;gBAAE,SAAS;YAE1B,sEAAsE;YACtE,sEAAsE;YACtE,IAAI,SAAS,CAAC,IAAI,CAAC,KAAK,SAAS;gBAAE,SAAS;YAE5C,EAAE,CAAC,IAAI,CAAC,gBAAS,CAAC,CAAE,CAAC,CAAC;YACtB,YAAY,CAAC,IAAI,CAAC,QAAQ,CAAC,CAAC;YAE5B,mBAAmB,CAAC,IAAI,CAAC,KAAK,CAAC,aAAc,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YACzD,iBAAiB,CAAC,IAAI,CAAC,KAAK,CAAC,WAAY,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YACrD,kBAAkB,CAAC,IAAI,CAAC,KAAK,CAAC,YAAa,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YACvD,mBAAmB,CAAC,IAAI,CAAC,KAAK,CAAC,aAAc,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YAEzD,mBAAmB,CAAC,IAAI,CAAC,KAAK,CAAC,aAAc,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YACzD,iBAAiB,CAAC,IAAI,CAAC,KAAK,CAAC,WAAY,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YACrD,kBAAkB,CAAC,IAAI,CAAC,KAAK,CAAC,YAAa,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YACvD,mBAAmB,CAAC,IAAI,CAAC,KAAK,CAAC,aAAc,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC;YAEzD,CAAC,IAAI,CAAC,CAAC;SACV;KACJ;IAED,IAAM,WAAW,GAA6D;QAC1E,EAAE,EAAE,cAAQ,CAAC,SAAS,CAAC,EAAE,CAAC;QAC1B,YAAY,EAAE,cAAQ,CAAC,SAAS,CAAC,YAAY,CAAC;QAE9C,mBAAmB,EAAE,cAAQ,CAAC,SAAS,CAAC,mBAAmB,CAAC;QAC5D,iBAAiB,EAAE,cAAQ,CAAC,SAAS,CAAC,iBAAiB,CAAC;QACxD,kBAAkB,EAAE,cAAQ,CAAC,SAAS,CAAC,kBAAkB,CAAC;QAC1D,mBAAmB,EAAE,cAAQ,CAAC,SAAS,CAAC,mBAAmB,CAAC;QAE5D,mBAAmB,EAAE,cAAQ,CAAC,SAAS,CAAC,mBAAmB,CAAC;QAC5D,kBAAkB,EAAE,cAAQ,CAAC,SAAS,CAAC,kBAAkB,CAAC;QAC1D,iBAAiB,EAAE,cAAQ,CAAC,SAAS,CAAC,iBAAiB,CAAC;QACxD,mBAAmB,EAAE,cAAQ,CAAC,SAAS,CAAC,mBAAmB,CAAC;KAC/D,CAAC;IAEF,OAAO,iBAAW,CAAC,QAAQ,CAAC,aAAa,EAAE,WAAW,CAAC,CAAC;AAC5D,CAAC;AA9ED,kCA8EC"}

package/lib/commonjs/mol-model-formats/structure/pdb/entity.js

@@ -101,7 +101,7 @@ function parseHetnam(lines, lineStart, lineEnd) {
         var het = line.substr(11, 3).trim();
         var name_1 = line.substr(15).trim();
         if (hetnams.has(het)) {
-            hetnams.set(het, hetnams.get(het) + " " + name_1);
+            hetnams.set(het, "".concat(hetnams.get(het), " ").concat(name_1));
         }
         else {
             hetnams.set(het, name_1);

package/lib/commonjs/mol-model-formats/structure/pdb/entity.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-model-formats/structure/property/assembly.js

@@ -95,7 +95,7 @@ function getAssemblyOperators(matrices, operatorNames, startIndex, assemblyId) {
             linear_algebra_1.Mat4.mul(m, m, matrices.get(op[i]));
         }
         index++;
-        operators[operators.length] = symmetry_operator_1.SymmetryOperator.create("ASM_" + index, m, { assembly: { id: assemblyId, operId: index, operList: op } });
+        operators[operators.length] = symmetry_operator_1.SymmetryOperator.create("ASM_".concat(index), m, { assembly: { id: assemblyId, operId: index, operList: op } });
     }
     return operators;
 }

package/lib/commonjs/mol-model-formats/structure/property/assembly.js.map

@@ -1 +1 @@
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+{"version":3,"file":"assembly.js","sourceRoot":"","sources":["../../../../../src/mol-model-formats/structure/property/assembly.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,mEAAsE;AACtE,kFAAgF;AAChF,mFAAiH;AACjH,0DAA4D;AAC5D,0DAAmE;AAQnE,SAAgB,gBAAgB,CAAC,oBAAoC,EAAE,wBAA2C,EAAE,qBAAqC;IACrJ,IAAI,CAAC,oBAAoB,CAAC,SAAS;QAAE,OAAO,EAAE,CAAC;IAE/C,IAAM,QAAQ,GAAG,WAAW,CAAC,qBAAqB,CAAC,CAAC;IACpD,IAAM,UAAU,GAAe,EAAE,CAAC;IAClC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,oBAAoB,CAAC,SAAS,EAAE,CAAC,EAAE,EAAE;QACrD,UAAU,CAAC,UAAU,CAAC,MAAM,CAAC,GAAG,cAAc,CAAC,oBAAoB,EAAE,wBAAwB,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAC;KAC/G;IACD,OAAO,UAAU,CAAC;AACtB,CAAC;AATD,4CASC;AAKD,SAAS,cAAc,CAAC,oBAAoC,EAAE,wBAA2C,EAAE,KAAa,EAAE,QAAkB;IACxI,IAAM,EAAE,GAAG,oBAAoB,CAAC,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IAChD,IAAM,OAAO,GAAG,oBAAoB,CAAC,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IAC1D,IAAM,UAAU,GAAgB,EAAE,CAAC;IAE3B,IAAA,WAAW,GAAoC,wBAAwB,YAA5D,EAAE,eAAe,GAAmB,wBAAwB,gBAA3C,EAAE,YAAY,GAAK,wBAAwB,aAA7B,CAA8B;IAEhF,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,wBAAwB,CAAC,SAAS,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE;QAClE,IAAI,WAAW,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,EAAE;YAAE,SAAS;QAC1C,UAAU,CAAC,UAAU,CAAC,MAAM,CAAC,GAAG;YAC5B,UAAU,EAAE,EAAE;YACd,UAAU,EAAE,eAAe,CAAC,KAAK,CAAC,CAAC,CAAC;YACpC,OAAO,EAAE,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC;SACjC,CAAC;KACL;IAED,OAAO,mBAAQ,CAAC,MAAM,CAAC,EAAE,EAAE,OAAO,EAAE,sBAAsB,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAC,CAAC;AACtF,CAAC;AAED,SAAS,sBAAsB,CAAC,UAAuB,EAAE,QAAkB;IACvE,OAAO;QACH,IAAM,MAAM,GAAoB,EAAE,CAAC;QAEnC,IAAI,cAAc,GAAG,CAAC,CAAC;QACvB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACxC,IAAM,GAAG,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;YAC1B,IAAM,YAAY,GAAG,iBAAiB,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC;YACvD,IAAM,aAAa,GAAG,eAAe,CAAC,YAAY,CAAC,CAAC;YACpD,IAAM,SAAS,GAAG,oBAAoB,CAAC,QAAQ,EAAE,aAAa,EAAE,cAAc,EAAE,GAAG,CAAC,UAAU,CAAC,CAAC;YAChG,IAAM,QAAQ,GAAG,mBAAC,CAAC,UAAU,CAAC,KAAK,CAAC,EAAE,SAAS,EAAE,mBAAC,CAAC,IAAI,CAAC,GAAG,CACvD,mBAAC,CAAC,IAAI,CAAC,EAAE,CAAC,UAAA,GAAG,IAAI,OAAA,+BAAmB,CAAC,IAAI,CAAC,aAAa,CAAC,GAAG,CAAC,OAAO,CAAC,EAAnD,CAAmD,EAAE,oCAAgB,CAAC,WAAW,CAAC,EACnG,mBAAC,CAAC,IAAI,CAAC,KAAK,CAAC,UAAA,GAAG,IAAI,OAAA,+BAAmB,CAAC,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,OAAO,CAAC,EAApD,CAAoD,EAAE,GAAG,CAAC,OAAO,CAAC,CACzF,EAAE,CAAC,CAAC;YACL,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,EAAE,QAAQ,UAAA,EAAE,SAAS,WAAA,EAAE,CAAC;YAChD,cAAc,IAAI,SAAS,CAAC,MAAM,CAAC;SACtC;QAED,OAAO,MAAM,CAAC;IAClB,CAAC,CAAC;AACN,CAAC;AAED,SAAS,WAAW,CAAC,qBAAqC;IAC9C,IAAA,EAAE,GAA8B,qBAAqB,GAAnD,EAAE,MAAM,GAAsB,qBAAqB,OAA3C,EAAE,MAAM,GAAc,qBAAqB,OAAnC,EAAE,OAAO,GAAK,qBAAqB,QAA1B,CAA2B;IAC9D,IAAM,QAAQ,GAAG,IAAI,GAAG,EAAgB,CAAC;IAEzC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,qBAAqB,CAAC,SAAS,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE;QAC/D,IAAM,CAAC,GAAG,uBAAM,CAAC,MAAM,CAAC,IAAA,qBAAI,GAAE,EAAE,OAAO,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;QACvE,IAAM,CAAC,GAAG,uBAAM,CAAC,MAAM,CAAC,IAAA,qBAAI,GAAE,EAAE,OAAO,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;QACvE,qBAAI,CAAC,cAAc,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;QAC1B,qBAAI,CAAC,QAAQ,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;QAC1B,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;KAChC;IAED,OAAO,QAAQ,CAAC;AACpB,CAAC;AAED,SAAS,eAAe,CAAC,YAAwB;IAC7C,IAAM,GAAG,GAAe,EAAE,CAAC;IAC3B,IAAM,SAAS,GAAa,EAAE,CAAC;IAC/B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,EAAE;QAAE,SAAS,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;IAChE,gBAAgB,CAAC,YAAY,EAAE,GAAG,EAAE,YAAY,CAAC,MAAM,GAAG,CAAC,EAAE,SAAS,CAAC,CAAC;IACxE,OAAO,GAAG,CAAC;AACf,CAAC;AAED,SAAS,gBAAgB,CAAC,aAAyB,EAAE,IAAgB,EAAE,CAAS,EAAE,OAAiB;IAC/F,IAAI,CAAC,GAAG,CAAC,EAAE;QACP,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QACrC,OAAO;KACV;IAED,IAAM,GAAG,GAAG,aAAa,CAAC,CAAC,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC,MAAM,CAAC;IAC/C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE;QAC1B,OAAO,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC;QACpB,gBAAgB,CAAC,aAAa,EAAE,IAAI,EAAE,CAAC,GAAG,CAAC,EAAE,OAAO,CAAC,CAAC;KACzD;AACL,CAAC;AAED,SAAS,oBAAoB,CAAC,QAAkB,EAAE,aAAyB,EAAE,UAAkB,EAAE,UAAkB;IAC/G,IAAM,SAAS,GAAuB,EAAE,CAAC;IAEzC,IAAI,KAAK,GAAG,UAAU,CAAC;IACvB,KAAiB,UAAa,EAAb,+BAAa,EAAb,2BAAa,EAAb,IAAa,EAAE;QAA3B,IAAM,EAAE,sBAAA;QACT,IAAM,CAAC,GAAG,qBAAI,CAAC,QAAQ,EAAE,CAAC;QAC1B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAChC,qBAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,EAAE,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,CAAE,CAAC,CAAC;SACxC;QACD,KAAK,EAAE,CAAC;QACR,SAAS,CAAC,SAAS,CAAC,MAAM,CAAC,GAAG,oCAAgB,CAAC,MAAM,CAAC,cAAO,KAAK,CAAE,EAAE,CAAC,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,EAAE,UAAU,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,EAAE,EAAE,EAAE,EAAE,CAAC,CAAC;KAC3I;IAED,OAAO,SAAS,CAAC;AACrB,CAAC;AAED,SAAS,iBAAiB,CAAC,KAAa;IACpC,0DAA0D;IAC1D,4BAA4B;IAE5B,IAAM,OAAO,GAAG,qBAAqB,EAAE,MAAM,GAAa,EAAE,EAAE,GAAG,GAAe,EAAE,CAAC;IAEnF,IAAI,CAAM,CAAC;IACX,OAAO,CAAC,GAAG,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC;QAAE,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IAE7D,MAAM,CAAC,OAAO,CAAC,UAAA,CAAC;QACZ,I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package/lib/commonjs/mol-model-formats/structure/property/symmetry.js

@@ -70,7 +70,7 @@ function getNcsOperators(struct_ncs_oper) {
         if (struct_ncs_oper.code.value(i) === 'given' && !linear_algebra_1.Mat3.isIdentity(m) && !linear_algebra_1.Vec3.isZero(v))
             continue;
         var ncsId = id.value(i);
-        opers[opers.length] = geometry_1.SymmetryOperator.ofRotationAndOffset("ncs_" + ncsId, m, v, ncsId);
+        opers[opers.length] = geometry_1.SymmetryOperator.ofRotationAndOffset("ncs_".concat(ncsId), m, v, ncsId);
     }
     return opers;
 }

package/lib/commonjs/mol-model-formats/structure/property/symmetry.js.map

@@ -1 +1 @@
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+{"version":3,"file":"symmetry.js","sourceRoot":"","sources":["../../../../../src/mol-model-formats/structure/property/symmetry.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;AAEH,iEAAuE;AACvE,uDAA0F;AAC1F,mEAAsE;AAEtE,uCAA8C;AAE9C,+CAA4D;AAK5D,IAAU,aAAa,CA6BtB;AA7BD,WAAU,aAAa;IACN,wBAAU,GAA6B;QAChD,IAAI,EAAE,gBAAgB;KACzB,CAAC;IAEW,sBAAQ,GAAG,iCAAsB,CAAC,MAAM,CAAW,cAAA,UAAU,CAAC,CAAC;IAY5E,SAAgB,QAAQ,CAAC,IAAU;QAC/B,IAAM,UAAU,GAAG,IAAA,2BAAgB,EAAC,IAAI,CAAC,oBAAoB,EAAE,IAAI,CAAC,wBAAwB,EAAE,IAAI,CAAC,qBAAqB,CAAC,CAAC;QAC1H,IAAM,UAAU,GAAG,aAAa,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC;QAC3D,IAAM,yBAAyB,GAAG,4BAA4B,CAAC,IAAI,CAAC,UAAU,EAAE,UAAU,CAAC,CAAC;QAC5F,OAAO,EAAE,UAAU,YAAA,EAAE,UAAU,YAAA,EAAE,yBAAyB,2BAAA,EAAE,YAAY,EAAE,eAAe,CAAC,IAAI,CAAC,eAAe,CAAC,EAAE,CAAC;IACtH,CAAC;IALe,sBAAQ,WAKvB,CAAA;IAED,SAAgB,QAAQ,CAAC,IAAU,EAAE,eAAqB;QACtD,IAAM,SAAS,GAAG,yBAAc,CAAC,MAAM,CAAC,KAAK,EAAE,IAAI,EAAE,eAAe,CAAC,CAAC;QACtE,IAAM,UAAU,GAAG,qBAAU,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;QAChD,OAAO,EAAE,UAAU,EAAE,EAAE,EAAE,UAAU,YAAA,EAAE,yBAAyB,EAAE,KAAK,EAAE,CAAC;IAC5E,CAAC;IAJe,sBAAQ,WAIvB,CAAA;AACL,CAAC,EA7BS,aAAa,KAAb,aAAa,QA6BtB;AA/BQ,sCAAa;AAiCtB,SAAS,4BAA4B,CAAC,UAA6C,EAAE,UAAsB;IACvG,IAAI,UAAU,CAAC,SAAS,KAAK,CAAC;QAAE,OAAO,KAAK,CAAC;IAC7C,0FAA0F;IAC1F,OAAO,KAAK,CAAC;AACjB,CAAC;AAED,SAAS,yBAAyB,CAAC,QAAyC;IACxE,IAAM,WAAW,GAAG,QAAQ,CAAC,mBAAmB,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IAC3D,IAAM,SAAS,GAAG,QAAQ,CAAC,sBAAsB,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IAC5D,IAAI,CAAC,QAAQ,CAAC,mBAAmB,CAAC,CAAC,SAAS;QAAE,OAAO,SAAS,CAAC;IAC/D,IAAI,CAAC,QAAQ,CAAC,sBAAsB,CAAC,CAAC,SAAS;QAAE,OAAO,WAAW,CAAC;IACpE,OAAO,SAAS,CAAC;AACrB,CAAC;AAED,SAAS,aAAa,CAAC,QAAyC,EAAE,IAAiC;IAC/F,IAAI,QAAQ,CAAC,SAAS,KAAK,CAAC,IAAI,IAAI,CAAC,SAAS,KAAK,CAAC;QAAE,OAAO,qBAAU,CAAC,MAAM,CAAC;IAC/E,IAAM,YAAY,GAAG,yBAAyB,CAAC,QAAQ,CAAC,CAAC;IACzD,IAAM,SAAS,GAAG,yBAAc,CAAC,MAAM,CAAC,YAAY,EAChD,qBAAI,CAAC,MAAM,CAAC,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,EACnF,qBAAI,CAAC,KAAK,CAAC,qBAAI,CAAC,IAAI,EAAE,EAAE,qBAAI,CAAC,MAAM,CAAC,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,EAAE,GAAG,GAAG,CAAC,CAAC,CAAC;IAEzI,OAAO,qBAAU,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;AACxC,CAAC;AAED,SAAS,eAAe,CAAC,eAAuD;IAC5E,IAAI,eAAe,CAAC,SAAS,KAAK,CAAC;QAAE,OAAO,KAAK,CAAC,CAAC;IAC3C,IAAA,EAAE,GAAqB,eAAe,GAApC,EAAE,MAAM,GAAa,eAAe,OAA5B,EAAE,MAAM,GAAK,eAAe,OAApB,CAAqB;IAE/C,IAAM,WAAW,GAAG,oBAAY,CAAC,eAAe,CAAC,MAAM,CAAC,KAAK,EAAE,WAAW,GAAG,oBAAY,CAAC,eAAe,CAAC,MAAM,CAAC,KAAK,CAAC;IAEvH,IAAM,KAAK,GAAuB,EAAE,CAAC;IACrC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,eAAe,CAAC,SAAS,EAAE,CAAC,EAAE,EAAE;QAChD,IAAM,CAAC,GAAG,uBAAM,CAAC,MAAM,CAAC,IAAA,qBAAI,GAAE,EAAE,WAAW,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;QAC9D,IAAM,CAAC,GAAG,uBAAM,CAAC,MAAM,CAAC,IAAA,qBAAI,GAAE,EAAE,WAAW,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;QAC9D,IAAI,CAAC,2BAAgB,CAAC,6BAA6B,CAAC,CAAC,EAAE,CAAC,CAAC;YAAE,SAAS;QACpE,4CAA4C;QAC5C,IAAI,eAAe,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,OAAO,IAAI,CAAC,qBAAI,CAAC,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,qBAAI,CAAC,MAAM,CAAC,CAAC,CAAC;YAAE,SAAS;QAClG,IAAM,KAAK,GAAG,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAC1B,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC,GAAG,2BAAgB,CAAC,mBAAmB,CAAC,cAAO,KAAK,CAAE,EAAE,CAAC,EAAE,CAAC,EAAE,KAAK,CAAC,CAAC;KAC3F;IACD,OAAO,KAAK,CAAC;AACjB,CAAC"}

package/lib/commonjs/mol-model-formats/volume/ccp4.js

@@ -33,7 +33,7 @@ function getTypedArrayCtor(header) {
         case typed_array_1.TypedArrayValueType.Int16: return Int16Array;
         case typed_array_1.TypedArrayValueType.Uint16: return Uint16Array;
     }
-    throw Error(valueType + " is not a supported value format.");
+    throw Error("".concat(valueType, " is not a supported value format."));
 }
 function volumeFromCcp4(source, params) {
     var _this = this;

package/lib/commonjs/mol-model-formats/volume/ccp4.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ccp4.js","sourceRoot":"","sources":["../../../../src/mol-model-formats/volume/ccp4.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAGH,2CAAsC;AACtC,oDAAgE;AAChE,gEAA6D;AAE7D,4CAA+C;AAC/C,0DAAmE;AACnE,+DAAsE;AACtE,8CAA+E;AAE/E,mEAAmE;AAEnE,mFAAmF;AACnF,SAAgB,aAAa,CAAC,MAAkB;IAC5C,IAAI,MAAM,CAAC,OAAO,KAAK,GAAG,IAAI,MAAM,CAAC,OAAO,KAAK,GAAG,IAAI,MAAM,CAAC,OAAO,KAAK,GAAG,EAAE;QAC5E,OAAO,qBAAI,CAAC,MAAM,CAAC,MAAM,CAAC,OAAO,EAAE,MAAM,CAAC,OAAO,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;KACtE;SAAM;QACH,OAAO,qBAAI,CAAC,MAAM,CACd,MAAM,CAAC,OAAO,GAAG,CAAC,MAAM,CAAC,OAAO,GAAG,MAAM,CAAC,EAAE,CAAC,EAC7C,MAAM,CAAC,OAAO,GAAG,CAAC,MAAM,CAAC,OAAO,GAAG,MAAM,CAAC,EAAE,CAAC,EAC7C,MAAM,CAAC,OAAO,GAAG,CAAC,MAAM,CAAC,OAAO,GAAG,MAAM,CAAC,EAAE,CAAC,CAChD,CAAC;KACL;AACL,CAAC;AAVD,sCAUC;AAED,SAAS,iBAAiB,CAAC,MAAkB;IACzC,IAAM,SAAS,GAAG,IAAA,yBAAgB,EAAC,MAAM,CAAC,CAAC;IAC3C,QAAQ,SAAS,EAAE;QACf,KAAK,iCAAmB,CAAC,OAAO,CAAC,CAAC,OAAO,YAAY,CAAC;QACtD,KAAK,iCAAmB,CAAC,IAAI,CAAC,CAAC,OAAO,SAAS,CAAC;QAChD,KAAK,iCAAmB,CAAC,KAAK,CAAC,CAAC,OAAO,UAAU,CAAC;QAClD,KAAK,iCAAmB,CAAC,MAAM,CAAC,CAAC,OAAO,WAAW,CAAC;KACvD;IACD,MAAM,KAAK,CAAC,UAAG,SAAS,sCAAmC,CAAC,CAAC;AACjE,CAAC;AAED,SAAgB,cAAc,CAAC,MAAgB,EAAE,MAA8E;IAA/H,iBAiDC;IAhDG,OAAO,eAAI,CAAC,MAAM,CAAS,eAAe,EAAE,UAAM,GAAG;;;YACzC,MAAM,GAAa,MAAM,OAAnB,EAAE,MAAM,GAAK,MAAM,OAAX,CAAY;YAC5B,IAAI,GAAG,qBAAI,CAAC,MAAM,CAAC,MAAM,CAAC,OAAO,EAAE,MAAM,CAAC,OAAO,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;YACzE,IAAI,MAAM,IAAI,MAAM,CAAC,SAAS;gBAAE,qBAAI,CAAC,GAAG,CAAC,IAAI,EAAE,IAAI,EAAE,MAAM,CAAC,SAAS,CAAC,CAAC;YACjE,MAAM,GAAG,qBAAI,CAAC,MAAM,CAAC,IAAA,eAAQ,EAAC,MAAM,CAAC,KAAK,CAAC,EAAE,IAAA,eAAQ,EAAC,MAAM,CAAC,IAAI,CAAC,EAAE,IAAA,eAAQ,EAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC;YAC5F,UAAU,GAAG,MAAM,CAAC,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC;YACnD,IAAI,GAAG,yBAAc,CAAC,MAAM,CAAC,UAAU,IAAI,KAAK,EAAE,IAAI,EAAE,MAAM,CAAC,CAAC;YAEhE,uBAAuB,GAAG,qBAAI,CAAC,MAAM,CAAC,MAAM,CAAC,IAAI,GAAG,CAAC,EAAE,MAAM,CAAC,IAAI,GAAG,CAAC,EAAE,MAAM,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC;YACzF,cAAc,GAAG,uBAAM,CAAC,uCAAuC,CAAC,uBAAuB,CAAC,CAAC;YAEzF,IAAI,GAAG,CAAC,MAAM,CAAC,EAAE,EAAE,MAAM,CAAC,EAAE,EAAE,MAAM,CAAC,EAAE,CAAC,CAAC;YACzC,MAAM,GAAG,cAAc,CAAC,CAAC,MAAM,CAAC,EAAE,EAAE,MAAM,CAAC,EAAE,EAAE,MAAM,CAAC,EAAE,CAAC,CAAC,CAAC;YAC3D,MAAM,GAAG,aAAa,CAAC,MAAM,CAAC,CAAC;YACrC,IAAI,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,MAAM;gBAAE,qBAAI,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;YACtD,UAAU,GAAG,cAAc,CAAC,MAAM,CAAC,CAAC;YAEpC,WAAW,GAAG,qBAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE,UAAU,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE,UAAU,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;YACrG,eAAe,GAAG,qBAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;YAE7F,KAAK,GAAG,uBAAM,CAAC,KAAK,CAAC,MAAM,EAAE,uBAAM,CAAC,eAAe,CAAC,uBAAuB,CAAC,EAAE,iBAAiB,CAAC,MAAM,CAAC,CAAC,CAAC;YACzG,IAAI,GAAG,uBAAM,CAAC,MAAM,CAAC,KAAK,EAAE,uBAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC;YAOlD,SAAS,GAAG,MAAM,CAAC,IAAI,KAAK,CAAC,IAAI,MAAM,CAAC,IAAI,KAAK,CAAC,IAAI,MAAM,CAAC,KAAK,KAAK,CAAC,IAAI,MAAM,CAAC,IAAI,KAAK,CAAC,CAAC;YAEpG,sBAAO;oBACH,KAAK,EAAE,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,KAAK;oBACpB,OAAO,EAAE,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,OAAO;oBACxB,IAAI,EAAE;wBACF,SAAS,EAAE,EAAE,IAAI,EAAE,YAAY,EAAE,IAAI,MAAA,EAAE,aAAa,EAAE,gBAAK,CAAC,MAAM,CAAC,WAAW,EAAE,qBAAI,CAAC,GAAG,CAAC,qBAAI,CAAC,IAAI,EAAE,EAAE,WAAW,EAAE,eAAe,CAAC,CAAC,EAAE;wBACtI,KAAK,EAAE,IAAI;wBACX,KAAK,EAAE;4BACH,GAAG,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,SAAS,CAAC,CAAC,CAAC,CAAC,IAAA,gBAAQ,EAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI;4BACvE,GAAG,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,SAAS,CAAC,CAAC,CAAC,CAAC,IAAA,gBAAQ,EAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI;4BACvE,IAAI,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,SAAS,CAAC,CAAC,CAAC,CAAC,IAAA,iBAAS,EAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK;4BAC3E,KAAK,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,MAAM,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,IAAA,gBAAQ,EAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI;yBACpF;qBACJ;oBACD,UAAU,EAAE,UAAU,CAAC,MAAM,CAAC,MAAM,CAAC;oBACrC,gBAAgB,EAAE,IAAI,kCAAgB,EAAE;oBACxC,aAAa,EAAE,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC;iBACrC,EAAC;;SACL,CAAC,CAAC;AACP,CAAC;AAjDD,wCAiDC;AAQD,IAAU,UAAU,CAQnB;AARD,WAAU,UAAU;IAChB,SAAgB,EAAE,CAAC,CAAe;QAC9B,OAAO,CAAA,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,IAAI,MAAK,MAAM,CAAC;IAC9B,CAAC;IAFe,aAAE,KAEjB,CAAA;IAED,SAAgB,MAAM,CAAC,IAAc;QACjC,OAAO,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,IAAI,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC;IACzD,CAAC;IAFe,iBAAM,SAErB,CAAA;AACL,CAAC,EARS,UAAU,KAAV,UAAU,QAQnB;AAZQ,gCAAU"}

package/lib/commonjs/mol-model-props/common/custom-element-property.js

@@ -70,7 +70,7 @@ var CustomElementProperty;
                 color: color,
                 props: props,
                 contextHash: contextHash,
-                description: "Assign element colors based on '" + modelProperty.label + "' data."
+                description: "Assign element colors based on '".concat(modelProperty.label, "' data.")
             };
         }
         return {

package/lib/commonjs/mol-model-props/common/custom-element-property.js.map

@@ -1 +1 @@
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