scipy 1.16.2__cp313-cp313t-win_arm64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scipy/__config__.py +161 -0
- scipy/__init__.py +150 -0
- scipy/_cyutility.cp313t-win_arm64.lib +0 -0
- scipy/_cyutility.cp313t-win_arm64.pyd +0 -0
- scipy/_distributor_init.py +18 -0
- scipy/_lib/__init__.py +14 -0
- scipy/_lib/_array_api.py +931 -0
- scipy/_lib/_array_api_compat_vendor.py +9 -0
- scipy/_lib/_array_api_no_0d.py +103 -0
- scipy/_lib/_bunch.py +229 -0
- scipy/_lib/_ccallback.py +251 -0
- scipy/_lib/_ccallback_c.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_ccallback_c.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_disjoint_set.py +254 -0
- scipy/_lib/_docscrape.py +761 -0
- scipy/_lib/_elementwise_iterative_method.py +346 -0
- scipy/_lib/_fpumode.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_fpumode.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_gcutils.py +105 -0
- scipy/_lib/_pep440.py +487 -0
- scipy/_lib/_sparse.py +41 -0
- scipy/_lib/_test_ccallback.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_test_ccallback.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_call.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_call.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_def.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_def.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_testutils.py +373 -0
- scipy/_lib/_threadsafety.py +58 -0
- scipy/_lib/_tmpdirs.py +86 -0
- scipy/_lib/_uarray/LICENSE +29 -0
- scipy/_lib/_uarray/__init__.py +116 -0
- scipy/_lib/_uarray/_backend.py +707 -0
- scipy/_lib/_uarray/_uarray.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_uarray/_uarray.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_util.py +1283 -0
- scipy/_lib/array_api_compat/__init__.py +22 -0
- scipy/_lib/array_api_compat/_internal.py +59 -0
- scipy/_lib/array_api_compat/common/__init__.py +1 -0
- scipy/_lib/array_api_compat/common/_aliases.py +727 -0
- scipy/_lib/array_api_compat/common/_fft.py +213 -0
- scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
- scipy/_lib/array_api_compat/common/_linalg.py +232 -0
- scipy/_lib/array_api_compat/common/_typing.py +192 -0
- scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
- scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
- scipy/_lib/array_api_compat/cupy/_info.py +336 -0
- scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
- scipy/_lib/array_api_compat/cupy/fft.py +36 -0
- scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
- scipy/_lib/array_api_compat/dask/__init__.py +0 -0
- scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
- scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
- scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
- scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
- scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
- scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
- scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
- scipy/_lib/array_api_compat/numpy/_info.py +366 -0
- scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
- scipy/_lib/array_api_compat/numpy/fft.py +35 -0
- scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
- scipy/_lib/array_api_compat/torch/__init__.py +22 -0
- scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
- scipy/_lib/array_api_compat/torch/_info.py +369 -0
- scipy/_lib/array_api_compat/torch/_typing.py +3 -0
- scipy/_lib/array_api_compat/torch/fft.py +85 -0
- scipy/_lib/array_api_compat/torch/linalg.py +121 -0
- scipy/_lib/array_api_extra/__init__.py +38 -0
- scipy/_lib/array_api_extra/_delegation.py +171 -0
- scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_at.py +463 -0
- scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
- scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
- scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
- scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
- scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
- scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
- scipy/_lib/array_api_extra/testing.py +359 -0
- scipy/_lib/cobyqa/__init__.py +20 -0
- scipy/_lib/cobyqa/framework.py +1240 -0
- scipy/_lib/cobyqa/main.py +1506 -0
- scipy/_lib/cobyqa/models.py +1529 -0
- scipy/_lib/cobyqa/problem.py +1296 -0
- scipy/_lib/cobyqa/settings.py +132 -0
- scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
- scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
- scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
- scipy/_lib/cobyqa/utils/__init__.py +18 -0
- scipy/_lib/cobyqa/utils/exceptions.py +22 -0
- scipy/_lib/cobyqa/utils/math.py +77 -0
- scipy/_lib/cobyqa/utils/versions.py +67 -0
- scipy/_lib/decorator.py +399 -0
- scipy/_lib/deprecation.py +274 -0
- scipy/_lib/doccer.py +366 -0
- scipy/_lib/messagestream.cp313t-win_arm64.lib +0 -0
- scipy/_lib/messagestream.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/pyprima/__init__.py +212 -0
- scipy/_lib/pyprima/cobyla/__init__.py +0 -0
- scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
- scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
- scipy/_lib/pyprima/cobyla/geometry.py +226 -0
- scipy/_lib/pyprima/cobyla/initialize.py +215 -0
- scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
- scipy/_lib/pyprima/cobyla/update.py +289 -0
- scipy/_lib/pyprima/common/__init__.py +0 -0
- scipy/_lib/pyprima/common/_bounds.py +34 -0
- scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
- scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
- scipy/_lib/pyprima/common/_project.py +173 -0
- scipy/_lib/pyprima/common/checkbreak.py +93 -0
- scipy/_lib/pyprima/common/consts.py +47 -0
- scipy/_lib/pyprima/common/evaluate.py +99 -0
- scipy/_lib/pyprima/common/history.py +38 -0
- scipy/_lib/pyprima/common/infos.py +30 -0
- scipy/_lib/pyprima/common/linalg.py +435 -0
- scipy/_lib/pyprima/common/message.py +290 -0
- scipy/_lib/pyprima/common/powalg.py +131 -0
- scipy/_lib/pyprima/common/preproc.py +277 -0
- scipy/_lib/pyprima/common/present.py +5 -0
- scipy/_lib/pyprima/common/ratio.py +54 -0
- scipy/_lib/pyprima/common/redrho.py +47 -0
- scipy/_lib/pyprima/common/selectx.py +296 -0
- scipy/_lib/tests/__init__.py +0 -0
- scipy/_lib/tests/test__gcutils.py +110 -0
- scipy/_lib/tests/test__pep440.py +67 -0
- scipy/_lib/tests/test__testutils.py +32 -0
- scipy/_lib/tests/test__threadsafety.py +51 -0
- scipy/_lib/tests/test__util.py +641 -0
- scipy/_lib/tests/test_array_api.py +322 -0
- scipy/_lib/tests/test_bunch.py +169 -0
- scipy/_lib/tests/test_ccallback.py +196 -0
- scipy/_lib/tests/test_config.py +45 -0
- scipy/_lib/tests/test_deprecation.py +10 -0
- scipy/_lib/tests/test_doccer.py +143 -0
- scipy/_lib/tests/test_import_cycles.py +18 -0
- scipy/_lib/tests/test_public_api.py +482 -0
- scipy/_lib/tests/test_scipy_version.py +28 -0
- scipy/_lib/tests/test_tmpdirs.py +48 -0
- scipy/_lib/tests/test_warnings.py +137 -0
- scipy/_lib/uarray.py +31 -0
- scipy/cluster/__init__.py +31 -0
- scipy/cluster/_hierarchy.cp313t-win_arm64.lib +0 -0
- scipy/cluster/_hierarchy.cp313t-win_arm64.pyd +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp313t-win_arm64.lib +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp313t-win_arm64.pyd +0 -0
- scipy/cluster/_vq.cp313t-win_arm64.lib +0 -0
- scipy/cluster/_vq.cp313t-win_arm64.pyd +0 -0
- scipy/cluster/hierarchy.py +4348 -0
- scipy/cluster/tests/__init__.py +0 -0
- scipy/cluster/tests/hierarchy_test_data.py +145 -0
- scipy/cluster/tests/test_disjoint_set.py +202 -0
- scipy/cluster/tests/test_hierarchy.py +1238 -0
- scipy/cluster/tests/test_vq.py +434 -0
- scipy/cluster/vq.py +832 -0
- scipy/conftest.py +683 -0
- scipy/constants/__init__.py +358 -0
- scipy/constants/_codata.py +2266 -0
- scipy/constants/_constants.py +369 -0
- scipy/constants/codata.py +21 -0
- scipy/constants/constants.py +53 -0
- scipy/constants/tests/__init__.py +0 -0
- scipy/constants/tests/test_codata.py +78 -0
- scipy/constants/tests/test_constants.py +83 -0
- scipy/datasets/__init__.py +90 -0
- scipy/datasets/_download_all.py +71 -0
- scipy/datasets/_fetchers.py +225 -0
- scipy/datasets/_registry.py +26 -0
- scipy/datasets/_utils.py +81 -0
- scipy/datasets/tests/__init__.py +0 -0
- scipy/datasets/tests/test_data.py +128 -0
- scipy/differentiate/__init__.py +27 -0
- scipy/differentiate/_differentiate.py +1129 -0
- scipy/differentiate/tests/__init__.py +0 -0
- scipy/differentiate/tests/test_differentiate.py +694 -0
- scipy/fft/__init__.py +114 -0
- scipy/fft/_backend.py +196 -0
- scipy/fft/_basic.py +1650 -0
- scipy/fft/_basic_backend.py +197 -0
- scipy/fft/_debug_backends.py +22 -0
- scipy/fft/_fftlog.py +223 -0
- scipy/fft/_fftlog_backend.py +200 -0
- scipy/fft/_helper.py +348 -0
- scipy/fft/_pocketfft/LICENSE.md +25 -0
- scipy/fft/_pocketfft/__init__.py +9 -0
- scipy/fft/_pocketfft/basic.py +251 -0
- scipy/fft/_pocketfft/helper.py +249 -0
- scipy/fft/_pocketfft/pypocketfft.cp313t-win_arm64.lib +0 -0
- scipy/fft/_pocketfft/pypocketfft.cp313t-win_arm64.pyd +0 -0
- scipy/fft/_pocketfft/realtransforms.py +109 -0
- scipy/fft/_pocketfft/tests/__init__.py +0 -0
- scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
- scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
- scipy/fft/_realtransforms.py +706 -0
- scipy/fft/_realtransforms_backend.py +63 -0
- scipy/fft/tests/__init__.py +0 -0
- scipy/fft/tests/mock_backend.py +96 -0
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- scipy/fft/tests/test_fftlog.py +215 -0
- scipy/fft/tests/test_helper.py +558 -0
- scipy/fft/tests/test_multithreading.py +84 -0
- scipy/fft/tests/test_real_transforms.py +247 -0
- scipy/fftpack/__init__.py +103 -0
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- scipy/fftpack/_realtransforms.py +598 -0
- scipy/fftpack/basic.py +20 -0
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- scipy/fftpack/pseudo_diffs.py +22 -0
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- scipy/fftpack/tests/test_import.py +33 -0
- scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
- scipy/fftpack/tests/test_real_transforms.py +836 -0
- scipy/integrate/__init__.py +122 -0
- scipy/integrate/_bvp.py +1160 -0
- scipy/integrate/_cubature.py +729 -0
- scipy/integrate/_dop.cp313t-win_arm64.lib +0 -0
- scipy/integrate/_dop.cp313t-win_arm64.pyd +0 -0
- scipy/integrate/_ivp/__init__.py +8 -0
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- scipy/integrate/_ivp/dop853_coefficients.py +193 -0
- scipy/integrate/_ivp/ivp.py +755 -0
- scipy/integrate/_ivp/lsoda.py +224 -0
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- scipy/integrate/_ivp/rk.py +601 -0
- scipy/integrate/_ivp/tests/__init__.py +0 -0
- scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
- scipy/integrate/_ivp/tests/test_rk.py +37 -0
- scipy/integrate/_lebedev.py +5450 -0
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- scipy/integrate/_ode.py +1395 -0
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- scipy/integrate/_rules/__init__.py +12 -0
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- scipy/integrate/_rules/_gauss_kronrod.py +202 -0
- scipy/integrate/_rules/_gauss_legendre.py +62 -0
- scipy/integrate/_rules/_genz_malik.py +210 -0
- scipy/integrate/_tanhsinh.py +1385 -0
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- scipy/integrate/tests/test_tanhsinh.py +1171 -0
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- scipy/stats/_page_trend_test.py +486 -0
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- scipy/stats/_relative_risk.py +263 -0
- scipy/stats/_resampling.py +2352 -0
- scipy/stats/_result_classes.py +40 -0
- scipy/stats/_sampling.py +1314 -0
- scipy/stats/_sensitivity_analysis.py +713 -0
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import math
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import pytest
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import numpy as np
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import scipy._lib._elementwise_iterative_method as eim
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import scipy._lib.array_api_extra as xpx
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from scipy._lib._array_api_no_0d import xp_assert_close, xp_assert_equal, xp_assert_less
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from scipy._lib._array_api import is_numpy, is_torch
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from scipy import stats, optimize, special
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from scipy.differentiate import derivative, jacobian, hessian
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from scipy.differentiate._differentiate import _EERRORINCREASE
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array_api_strict_skip_reason = 'Array API does not support fancy indexing assignment.'
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@pytest.mark.skip_xp_backends('array_api_strict', reason=array_api_strict_skip_reason)
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@pytest.mark.skip_xp_backends('dask.array', reason='boolean indexing assignment')
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class TestDerivative:
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def f(self, x):
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return special.ndtr(x)
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@pytest.mark.parametrize('x', [0.6, np.linspace(-0.05, 1.05, 10)])
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def test_basic(self, x, xp):
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# Invert distribution CDF and compare against distribution `ppf`
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default_dtype = xp.asarray(1.).dtype
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res = derivative(self.f, xp.asarray(x, dtype=default_dtype))
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ref = xp.asarray(stats.norm().pdf(x), dtype=default_dtype)
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xp_assert_close(res.df, ref)
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# This would be nice, but doesn't always work out. `error` is an
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# estimate, not a bound.
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if not is_torch(xp):
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xp_assert_less(xp.abs(res.df - ref), res.error)
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@pytest.mark.skip_xp_backends(np_only=True)
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@pytest.mark.parametrize('case', stats._distr_params.distcont)
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def test_accuracy(self, case, xp):
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distname, params = case
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dist = getattr(stats, distname)(*params)
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x = dist.median() + 0.1
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res = derivative(dist.cdf, x)
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ref = dist.pdf(x)
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xp_assert_close(res.df, ref, atol=1e-10)
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@pytest.mark.parametrize('order', [1, 6])
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@pytest.mark.parametrize('shape', [tuple(), (12,), (3, 4), (3, 2, 2)])
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def test_vectorization(self, order, shape, xp):
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# Test for correct functionality, output shapes, and dtypes for various
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# input shapes.
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x = np.linspace(-0.05, 1.05, 12).reshape(shape) if shape else 0.6
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n = np.size(x)
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state = {}
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@np.vectorize
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def _derivative_single(x):
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return derivative(self.f, x, order=order)
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def f(x, *args, **kwargs):
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state['nit'] += 1
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state['feval'] += 1 if (x.size == n or x.ndim <=1) else x.shape[-1]
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return self.f(x, *args, **kwargs)
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state['nit'] = -1
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state['feval'] = 0
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res = derivative(f, xp.asarray(x, dtype=xp.float64), order=order)
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refs = _derivative_single(x).ravel()
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ref_x = [ref.x for ref in refs]
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xp_assert_close(xp.reshape(res.x, (-1,)), xp.asarray(ref_x))
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ref_df = [ref.df for ref in refs]
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xp_assert_close(xp.reshape(res.df, (-1,)), xp.asarray(ref_df))
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ref_error = [ref.error for ref in refs]
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xp_assert_close(xp.reshape(res.error, (-1,)), xp.asarray(ref_error),
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atol=1e-12)
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ref_success = [bool(ref.success) for ref in refs]
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xp_assert_equal(xp.reshape(res.success, (-1,)), xp.asarray(ref_success))
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ref_flag = [np.int32(ref.status) for ref in refs]
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xp_assert_equal(xp.reshape(res.status, (-1,)), xp.asarray(ref_flag))
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ref_nfev = [np.int32(ref.nfev) for ref in refs]
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xp_assert_equal(xp.reshape(res.nfev, (-1,)), xp.asarray(ref_nfev))
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if is_numpy(xp): # can't expect other backends to be exactly the same
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assert xp.max(res.nfev) == state['feval']
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ref_nit = [np.int32(ref.nit) for ref in refs]
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xp_assert_equal(xp.reshape(res.nit, (-1,)), xp.asarray(ref_nit))
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if is_numpy(xp): # can't expect other backends to be exactly the same
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assert xp.max(res.nit) == state['nit']
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def test_flags(self, xp):
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# Test cases that should produce different status flags; show that all
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# can be produced simultaneously.
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rng = np.random.default_rng(5651219684984213)
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def f(xs, js):
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f.nit += 1
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funcs = [lambda x: x - 2.5, # converges
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lambda x: xp.exp(x)*rng.random(), # error increases
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lambda x: xp.exp(x), # reaches maxiter due to order=2
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lambda x: xp.full_like(x, xp.nan)] # stops due to NaN
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res = [funcs[int(j)](x) for x, j in zip(xs, xp.reshape(js, (-1,)))]
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return xp.stack(res)
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f.nit = 0
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args = (xp.arange(4, dtype=xp.int64),)
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res = derivative(f, xp.ones(4, dtype=xp.float64),
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tolerances=dict(rtol=1e-14),
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order=2, args=args)
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ref_flags = xp.asarray([eim._ECONVERGED,
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_EERRORINCREASE,
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eim._ECONVERR,
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eim._EVALUEERR], dtype=xp.int32)
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xp_assert_equal(res.status, ref_flags)
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+
def test_flags_preserve_shape(self, xp):
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123
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+
# Same test as above but using `preserve_shape` option to simplify.
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124
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+
rng = np.random.default_rng(5651219684984213)
|
125
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+
def f(x):
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126
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+
out = [x - 2.5, # converges
|
127
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+
xp.exp(x)*rng.random(), # error increases
|
128
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+
xp.exp(x), # reaches maxiter due to order=2
|
129
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+
xp.full_like(x, xp.nan)] # stops due to NaN
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130
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+
return xp.stack(out)
|
131
|
+
|
132
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+
res = derivative(f, xp.asarray(1, dtype=xp.float64),
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133
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+
tolerances=dict(rtol=1e-14),
|
134
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+
order=2, preserve_shape=True)
|
135
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+
|
136
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+
ref_flags = xp.asarray([eim._ECONVERGED,
|
137
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+
_EERRORINCREASE,
|
138
|
+
eim._ECONVERR,
|
139
|
+
eim._EVALUEERR], dtype=xp.int32)
|
140
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+
xp_assert_equal(res.status, ref_flags)
|
141
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+
|
142
|
+
def test_preserve_shape(self, xp):
|
143
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+
# Test `preserve_shape` option
|
144
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+
def f(x):
|
145
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+
out = [x, xp.sin(3*x), x+xp.sin(10*x), xp.sin(20*x)*(x-1)**2]
|
146
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+
return xp.stack(out)
|
147
|
+
|
148
|
+
x = xp.asarray(0.)
|
149
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+
ref = xp.asarray([xp.asarray(1), 3*xp.cos(3*x), 1+10*xp.cos(10*x),
|
150
|
+
20*xp.cos(20*x)*(x-1)**2 + 2*xp.sin(20*x)*(x-1)])
|
151
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+
res = derivative(f, x, preserve_shape=True)
|
152
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+
xp_assert_close(res.df, ref)
|
153
|
+
|
154
|
+
def test_convergence(self, xp):
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155
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+
# Test that the convergence tolerances behave as expected
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156
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+
x = xp.asarray(1., dtype=xp.float64)
|
157
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+
f = special.ndtr
|
158
|
+
ref = float(stats.norm.pdf(1.))
|
159
|
+
tolerances0 = dict(atol=0, rtol=0)
|
160
|
+
|
161
|
+
tolerances = tolerances0.copy()
|
162
|
+
tolerances['atol'] = 1e-3
|
163
|
+
res1 = derivative(f, x, tolerances=tolerances, order=4)
|
164
|
+
assert abs(res1.df - ref) < 1e-3
|
165
|
+
tolerances['atol'] = 1e-6
|
166
|
+
res2 = derivative(f, x, tolerances=tolerances, order=4)
|
167
|
+
assert abs(res2.df - ref) < 1e-6
|
168
|
+
assert abs(res2.df - ref) < abs(res1.df - ref)
|
169
|
+
|
170
|
+
tolerances = tolerances0.copy()
|
171
|
+
tolerances['rtol'] = 1e-3
|
172
|
+
res1 = derivative(f, x, tolerances=tolerances, order=4)
|
173
|
+
assert abs(res1.df - ref) < 1e-3 * ref
|
174
|
+
tolerances['rtol'] = 1e-6
|
175
|
+
res2 = derivative(f, x, tolerances=tolerances, order=4)
|
176
|
+
assert abs(res2.df - ref) < 1e-6 * ref
|
177
|
+
assert abs(res2.df - ref) < abs(res1.df - ref)
|
178
|
+
|
179
|
+
def test_step_parameters(self, xp):
|
180
|
+
# Test that step factors have the expected effect on accuracy
|
181
|
+
x = xp.asarray(1., dtype=xp.float64)
|
182
|
+
f = special.ndtr
|
183
|
+
ref = float(stats.norm.pdf(1.))
|
184
|
+
|
185
|
+
res1 = derivative(f, x, initial_step=0.5, maxiter=1)
|
186
|
+
res2 = derivative(f, x, initial_step=0.05, maxiter=1)
|
187
|
+
assert abs(res2.df - ref) < abs(res1.df - ref)
|
188
|
+
|
189
|
+
res1 = derivative(f, x, step_factor=2, maxiter=1)
|
190
|
+
res2 = derivative(f, x, step_factor=20, maxiter=1)
|
191
|
+
assert abs(res2.df - ref) < abs(res1.df - ref)
|
192
|
+
|
193
|
+
# `step_factor` can be less than 1: `initial_step` is the minimum step
|
194
|
+
kwargs = dict(order=4, maxiter=1, step_direction=0)
|
195
|
+
res = derivative(f, x, initial_step=0.5, step_factor=0.5, **kwargs)
|
196
|
+
ref = derivative(f, x, initial_step=1, step_factor=2, **kwargs)
|
197
|
+
xp_assert_close(res.df, ref.df, rtol=5e-15)
|
198
|
+
|
199
|
+
# This is a similar test for one-sided difference
|
200
|
+
kwargs = dict(order=2, maxiter=1, step_direction=1)
|
201
|
+
res = derivative(f, x, initial_step=1, step_factor=2, **kwargs)
|
202
|
+
ref = derivative(f, x, initial_step=1/np.sqrt(2), step_factor=0.5, **kwargs)
|
203
|
+
xp_assert_close(res.df, ref.df, rtol=5e-15)
|
204
|
+
|
205
|
+
kwargs['step_direction'] = -1
|
206
|
+
res = derivative(f, x, initial_step=1, step_factor=2, **kwargs)
|
207
|
+
ref = derivative(f, x, initial_step=1/np.sqrt(2), step_factor=0.5, **kwargs)
|
208
|
+
xp_assert_close(res.df, ref.df, rtol=5e-15)
|
209
|
+
|
210
|
+
def test_step_direction(self, xp):
|
211
|
+
# test that `step_direction` works as expected
|
212
|
+
def f(x):
|
213
|
+
y = xp.exp(x)
|
214
|
+
y = xpx.at(y)[(x < 0) + (x > 2)].set(xp.nan)
|
215
|
+
return y
|
216
|
+
|
217
|
+
x = xp.linspace(0, 2, 10)
|
218
|
+
step_direction = xp.zeros_like(x)
|
219
|
+
step_direction = xpx.at(step_direction)[x < 0.6].set(1)
|
220
|
+
step_direction = xpx.at(step_direction)[x > 1.4].set(-1)
|
221
|
+
res = derivative(f, x, step_direction=step_direction)
|
222
|
+
xp_assert_close(res.df, xp.exp(x))
|
223
|
+
assert xp.all(res.success)
|
224
|
+
|
225
|
+
def test_vectorized_step_direction_args(self, xp):
|
226
|
+
# test that `step_direction` and `args` are vectorized properly
|
227
|
+
def f(x, p):
|
228
|
+
return x ** p
|
229
|
+
|
230
|
+
def df(x, p):
|
231
|
+
return p * x ** (p - 1)
|
232
|
+
|
233
|
+
x = xp.reshape(xp.asarray([1, 2, 3, 4]), (-1, 1, 1))
|
234
|
+
hdir = xp.reshape(xp.asarray([-1, 0, 1]), (1, -1, 1))
|
235
|
+
p = xp.reshape(xp.asarray([2, 3]), (1, 1, -1))
|
236
|
+
res = derivative(f, x, step_direction=hdir, args=(p,))
|
237
|
+
ref = xp.broadcast_to(df(x, p), res.df.shape)
|
238
|
+
ref = xp.asarray(ref, dtype=xp.asarray(1.).dtype)
|
239
|
+
xp_assert_close(res.df, ref)
|
240
|
+
|
241
|
+
def test_initial_step(self, xp):
|
242
|
+
# Test that `initial_step` works as expected and is vectorized
|
243
|
+
def f(x):
|
244
|
+
return xp.exp(x)
|
245
|
+
|
246
|
+
x = xp.asarray(0., dtype=xp.float64)
|
247
|
+
step_direction = xp.asarray([-1, 0, 1])
|
248
|
+
h0 = xp.reshape(xp.logspace(-3, 0, 10), (-1, 1))
|
249
|
+
res = derivative(f, x, initial_step=h0, order=2, maxiter=1,
|
250
|
+
step_direction=step_direction)
|
251
|
+
err = xp.abs(res.df - f(x))
|
252
|
+
|
253
|
+
# error should be smaller for smaller step sizes
|
254
|
+
assert xp.all(err[:-1, ...] < err[1:, ...])
|
255
|
+
|
256
|
+
# results of vectorized call should match results with
|
257
|
+
# initial_step taken one at a time
|
258
|
+
for i in range(h0.shape[0]):
|
259
|
+
ref = derivative(f, x, initial_step=h0[i, 0], order=2, maxiter=1,
|
260
|
+
step_direction=step_direction)
|
261
|
+
xp_assert_close(res.df[i, :], ref.df, rtol=1e-14)
|
262
|
+
|
263
|
+
def test_maxiter_callback(self, xp):
|
264
|
+
# Test behavior of `maxiter` parameter and `callback` interface
|
265
|
+
x = xp.asarray(0.612814, dtype=xp.float64)
|
266
|
+
maxiter = 3
|
267
|
+
|
268
|
+
def f(x):
|
269
|
+
res = special.ndtr(x)
|
270
|
+
return res
|
271
|
+
|
272
|
+
default_order = 8
|
273
|
+
res = derivative(f, x, maxiter=maxiter, tolerances=dict(rtol=1e-15))
|
274
|
+
assert not xp.any(res.success)
|
275
|
+
assert xp.all(res.nfev == default_order + 1 + (maxiter - 1)*2)
|
276
|
+
assert xp.all(res.nit == maxiter)
|
277
|
+
|
278
|
+
def callback(res):
|
279
|
+
callback.iter += 1
|
280
|
+
callback.res = res
|
281
|
+
assert hasattr(res, 'x')
|
282
|
+
assert float(res.df) not in callback.dfs
|
283
|
+
callback.dfs.add(float(res.df))
|
284
|
+
assert res.status == eim._EINPROGRESS
|
285
|
+
if callback.iter == maxiter:
|
286
|
+
raise StopIteration
|
287
|
+
callback.iter = -1 # callback called once before first iteration
|
288
|
+
callback.res = None
|
289
|
+
callback.dfs = set()
|
290
|
+
|
291
|
+
res2 = derivative(f, x, callback=callback, tolerances=dict(rtol=1e-15))
|
292
|
+
# terminating with callback is identical to terminating due to maxiter
|
293
|
+
# (except for `status`)
|
294
|
+
for key in res.keys():
|
295
|
+
if key == 'status':
|
296
|
+
assert res[key] == eim._ECONVERR
|
297
|
+
assert res2[key] == eim._ECALLBACK
|
298
|
+
else:
|
299
|
+
assert res2[key] == callback.res[key] == res[key]
|
300
|
+
|
301
|
+
@pytest.mark.parametrize("hdir", (-1, 0, 1))
|
302
|
+
@pytest.mark.parametrize("x", (0.65, [0.65, 0.7]))
|
303
|
+
@pytest.mark.parametrize("dtype", ('float16', 'float32', 'float64'))
|
304
|
+
def test_dtype(self, hdir, x, dtype, xp):
|
305
|
+
if dtype == 'float16' and not is_numpy(xp):
|
306
|
+
pytest.skip('float16 not tested for alternative backends')
|
307
|
+
|
308
|
+
# Test that dtypes are preserved
|
309
|
+
dtype = getattr(xp, dtype)
|
310
|
+
x = xp.asarray(x, dtype=dtype)
|
311
|
+
|
312
|
+
def f(x):
|
313
|
+
assert x.dtype == dtype
|
314
|
+
return xp.exp(x)
|
315
|
+
|
316
|
+
def callback(res):
|
317
|
+
assert res.x.dtype == dtype
|
318
|
+
assert res.df.dtype == dtype
|
319
|
+
assert res.error.dtype == dtype
|
320
|
+
|
321
|
+
res = derivative(f, x, order=4, step_direction=hdir, callback=callback)
|
322
|
+
assert res.x.dtype == dtype
|
323
|
+
assert res.df.dtype == dtype
|
324
|
+
assert res.error.dtype == dtype
|
325
|
+
eps = xp.finfo(dtype).eps
|
326
|
+
# not sure why torch is less accurate here; might be worth investigating
|
327
|
+
rtol = eps**0.5 * 50 if is_torch(xp) else eps**0.5
|
328
|
+
xp_assert_close(res.df, xp.exp(res.x), rtol=rtol)
|
329
|
+
|
330
|
+
def test_input_validation(self, xp):
|
331
|
+
# Test input validation for appropriate error messages
|
332
|
+
one = xp.asarray(1)
|
333
|
+
|
334
|
+
message = '`f` must be callable.'
|
335
|
+
with pytest.raises(ValueError, match=message):
|
336
|
+
derivative(None, one)
|
337
|
+
|
338
|
+
message = 'Abscissae and function output must be real numbers.'
|
339
|
+
with pytest.raises(ValueError, match=message):
|
340
|
+
derivative(lambda x: x, xp.asarray(-4+1j))
|
341
|
+
|
342
|
+
message = "When `preserve_shape=False`, the shape of the array..."
|
343
|
+
with pytest.raises(ValueError, match=message):
|
344
|
+
derivative(lambda x: [1, 2, 3], xp.asarray([-2, -3]))
|
345
|
+
|
346
|
+
message = 'Tolerances and step parameters must be non-negative...'
|
347
|
+
with pytest.raises(ValueError, match=message):
|
348
|
+
derivative(lambda x: x, one, tolerances=dict(atol=-1))
|
349
|
+
with pytest.raises(ValueError, match=message):
|
350
|
+
derivative(lambda x: x, one, tolerances=dict(rtol='ekki'))
|
351
|
+
with pytest.raises(ValueError, match=message):
|
352
|
+
derivative(lambda x: x, one, step_factor=object())
|
353
|
+
|
354
|
+
message = '`maxiter` must be a positive integer.'
|
355
|
+
with pytest.raises(ValueError, match=message):
|
356
|
+
derivative(lambda x: x, one, maxiter=1.5)
|
357
|
+
with pytest.raises(ValueError, match=message):
|
358
|
+
derivative(lambda x: x, one, maxiter=0)
|
359
|
+
|
360
|
+
message = '`order` must be a positive integer'
|
361
|
+
with pytest.raises(ValueError, match=message):
|
362
|
+
derivative(lambda x: x, one, order=1.5)
|
363
|
+
with pytest.raises(ValueError, match=message):
|
364
|
+
derivative(lambda x: x, one, order=0)
|
365
|
+
|
366
|
+
message = '`preserve_shape` must be True or False.'
|
367
|
+
with pytest.raises(ValueError, match=message):
|
368
|
+
derivative(lambda x: x, one, preserve_shape='herring')
|
369
|
+
|
370
|
+
message = '`callback` must be callable.'
|
371
|
+
with pytest.raises(ValueError, match=message):
|
372
|
+
derivative(lambda x: x, one, callback='shrubbery')
|
373
|
+
|
374
|
+
def test_special_cases(self, xp):
|
375
|
+
# Test edge cases and other special cases
|
376
|
+
|
377
|
+
# Test that integers are not passed to `f`
|
378
|
+
# (otherwise this would overflow)
|
379
|
+
def f(x):
|
380
|
+
assert xp.isdtype(x.dtype, 'real floating')
|
381
|
+
return x ** 99 - 1
|
382
|
+
|
383
|
+
if not is_torch(xp): # torch defaults to float32
|
384
|
+
res = derivative(f, xp.asarray(7), tolerances=dict(rtol=1e-10))
|
385
|
+
assert res.success
|
386
|
+
xp_assert_close(res.df, xp.asarray(99*7.**98))
|
387
|
+
|
388
|
+
# Test invalid step size and direction
|
389
|
+
res = derivative(xp.exp, xp.asarray(1), step_direction=xp.nan)
|
390
|
+
xp_assert_equal(res.df, xp.asarray(xp.nan))
|
391
|
+
xp_assert_equal(res.status, xp.asarray(-3, dtype=xp.int32))
|
392
|
+
|
393
|
+
res = derivative(xp.exp, xp.asarray(1), initial_step=0)
|
394
|
+
xp_assert_equal(res.df, xp.asarray(xp.nan))
|
395
|
+
xp_assert_equal(res.status, xp.asarray(-3, dtype=xp.int32))
|
396
|
+
|
397
|
+
# Test that if success is achieved in the correct number
|
398
|
+
# of iterations if function is a polynomial. Ideally, all polynomials
|
399
|
+
# of order 0-2 would get exact result with 0 refinement iterations,
|
400
|
+
# all polynomials of order 3-4 would be differentiated exactly after
|
401
|
+
# 1 iteration, etc. However, it seems that `derivative` needs an
|
402
|
+
# extra iteration to detect convergence based on the error estimate.
|
403
|
+
|
404
|
+
for n in range(6):
|
405
|
+
x = xp.asarray(1.5, dtype=xp.float64)
|
406
|
+
def f(x):
|
407
|
+
return 2*x**n
|
408
|
+
|
409
|
+
ref = 2*n*x**(n-1)
|
410
|
+
|
411
|
+
res = derivative(f, x, maxiter=1, order=max(1, n))
|
412
|
+
xp_assert_close(res.df, ref, rtol=1e-15)
|
413
|
+
xp_assert_equal(res.error, xp.asarray(xp.nan, dtype=xp.float64))
|
414
|
+
|
415
|
+
res = derivative(f, x, order=max(1, n))
|
416
|
+
assert res.success
|
417
|
+
assert res.nit == 2
|
418
|
+
xp_assert_close(res.df, ref, rtol=1e-15)
|
419
|
+
|
420
|
+
# Test scalar `args` (not in tuple)
|
421
|
+
def f(x, c):
|
422
|
+
return c*x - 1
|
423
|
+
|
424
|
+
res = derivative(f, xp.asarray(2), args=xp.asarray(3))
|
425
|
+
xp_assert_close(res.df, xp.asarray(3.))
|
426
|
+
|
427
|
+
# no need to run a test on multiple backends if it's xfailed
|
428
|
+
@pytest.mark.skip_xp_backends(np_only=True)
|
429
|
+
@pytest.mark.xfail
|
430
|
+
@pytest.mark.parametrize("case", ( # function, evaluation point
|
431
|
+
(lambda x: (x - 1) ** 3, 1),
|
432
|
+
(lambda x: np.where(x > 1, (x - 1) ** 5, (x - 1) ** 3), 1)
|
433
|
+
))
|
434
|
+
def test_saddle_gh18811(self, case, xp):
|
435
|
+
# With default settings, `derivative` will not always converge when
|
436
|
+
# the true derivative is exactly zero. This tests that specifying a
|
437
|
+
# (tight) `atol` alleviates the problem. See discussion in gh-18811.
|
438
|
+
atol = 1e-16
|
439
|
+
res = derivative(*case, step_direction=[-1, 0, 1], atol=atol)
|
440
|
+
assert np.all(res.success)
|
441
|
+
xp_assert_close(res.df, 0, atol=atol)
|
442
|
+
|
443
|
+
|
444
|
+
class JacobianHessianTest:
|
445
|
+
def test_iv(self, xp):
|
446
|
+
jh_func = self.jh_func.__func__
|
447
|
+
|
448
|
+
# Test input validation
|
449
|
+
message = "Argument `x` must be at least 1-D."
|
450
|
+
with pytest.raises(ValueError, match=message):
|
451
|
+
jh_func(xp.sin, 1, tolerances=dict(atol=-1))
|
452
|
+
|
453
|
+
# Confirm that other parameters are being passed to `derivative`,
|
454
|
+
# which raises an appropriate error message.
|
455
|
+
x = xp.ones(3)
|
456
|
+
func = optimize.rosen
|
457
|
+
message = 'Tolerances and step parameters must be non-negative scalars.'
|
458
|
+
with pytest.raises(ValueError, match=message):
|
459
|
+
jh_func(func, x, tolerances=dict(atol=-1))
|
460
|
+
with pytest.raises(ValueError, match=message):
|
461
|
+
jh_func(func, x, tolerances=dict(rtol=-1))
|
462
|
+
with pytest.raises(ValueError, match=message):
|
463
|
+
jh_func(func, x, step_factor=-1)
|
464
|
+
|
465
|
+
message = '`order` must be a positive integer.'
|
466
|
+
with pytest.raises(ValueError, match=message):
|
467
|
+
jh_func(func, x, order=-1)
|
468
|
+
|
469
|
+
message = '`maxiter` must be a positive integer.'
|
470
|
+
with pytest.raises(ValueError, match=message):
|
471
|
+
jh_func(func, x, maxiter=-1)
|
472
|
+
|
473
|
+
|
474
|
+
@pytest.mark.skip_xp_backends('array_api_strict', reason=array_api_strict_skip_reason)
|
475
|
+
@pytest.mark.skip_xp_backends('dask.array', reason='boolean indexing assignment')
|
476
|
+
class TestJacobian(JacobianHessianTest):
|
477
|
+
jh_func = jacobian
|
478
|
+
|
479
|
+
# Example functions and Jacobians from Wikipedia:
|
480
|
+
# https://en.wikipedia.org/wiki/Jacobian_matrix_and_determinant#Examples
|
481
|
+
|
482
|
+
def f1(z, xp):
|
483
|
+
x, y = z
|
484
|
+
return xp.stack([x ** 2 * y, 5 * x + xp.sin(y)])
|
485
|
+
|
486
|
+
def df1(z):
|
487
|
+
x, y = z
|
488
|
+
return [[2 * x * y, x ** 2], [np.full_like(x, 5), np.cos(y)]]
|
489
|
+
|
490
|
+
f1.mn = 2, 2 # type: ignore[attr-defined]
|
491
|
+
f1.ref = df1 # type: ignore[attr-defined]
|
492
|
+
|
493
|
+
def f2(z, xp):
|
494
|
+
r, phi = z
|
495
|
+
return xp.stack([r * xp.cos(phi), r * xp.sin(phi)])
|
496
|
+
|
497
|
+
def df2(z):
|
498
|
+
r, phi = z
|
499
|
+
return [[np.cos(phi), -r * np.sin(phi)],
|
500
|
+
[np.sin(phi), r * np.cos(phi)]]
|
501
|
+
|
502
|
+
f2.mn = 2, 2 # type: ignore[attr-defined]
|
503
|
+
f2.ref = df2 # type: ignore[attr-defined]
|
504
|
+
|
505
|
+
def f3(z, xp):
|
506
|
+
r, phi, th = z
|
507
|
+
return xp.stack([r * xp.sin(phi) * xp.cos(th), r * xp.sin(phi) * xp.sin(th),
|
508
|
+
r * xp.cos(phi)])
|
509
|
+
|
510
|
+
def df3(z):
|
511
|
+
r, phi, th = z
|
512
|
+
return [[np.sin(phi) * np.cos(th), r * np.cos(phi) * np.cos(th),
|
513
|
+
-r * np.sin(phi) * np.sin(th)],
|
514
|
+
[np.sin(phi) * np.sin(th), r * np.cos(phi) * np.sin(th),
|
515
|
+
r * np.sin(phi) * np.cos(th)],
|
516
|
+
[np.cos(phi), -r * np.sin(phi), np.zeros_like(r)]]
|
517
|
+
|
518
|
+
f3.mn = 3, 3 # type: ignore[attr-defined]
|
519
|
+
f3.ref = df3 # type: ignore[attr-defined]
|
520
|
+
|
521
|
+
def f4(x, xp):
|
522
|
+
x1, x2, x3 = x
|
523
|
+
return xp.stack([x1, 5 * x3, 4 * x2 ** 2 - 2 * x3, x3 * xp.sin(x1)])
|
524
|
+
|
525
|
+
def df4(x):
|
526
|
+
x1, x2, x3 = x
|
527
|
+
one = np.ones_like(x1)
|
528
|
+
return [[one, 0 * one, 0 * one],
|
529
|
+
[0 * one, 0 * one, 5 * one],
|
530
|
+
[0 * one, 8 * x2, -2 * one],
|
531
|
+
[x3 * np.cos(x1), 0 * one, np.sin(x1)]]
|
532
|
+
|
533
|
+
f4.mn = 3, 4 # type: ignore[attr-defined]
|
534
|
+
f4.ref = df4 # type: ignore[attr-defined]
|
535
|
+
|
536
|
+
def f5(x, xp):
|
537
|
+
x1, x2, x3 = x
|
538
|
+
return xp.stack([5 * x2, 4 * x1 ** 2 - 2 * xp.sin(x2 * x3), x2 * x3])
|
539
|
+
|
540
|
+
def df5(x):
|
541
|
+
x1, x2, x3 = x
|
542
|
+
one = np.ones_like(x1)
|
543
|
+
return [[0 * one, 5 * one, 0 * one],
|
544
|
+
[8 * x1, -2 * x3 * np.cos(x2 * x3), -2 * x2 * np.cos(x2 * x3)],
|
545
|
+
[0 * one, x3, x2]]
|
546
|
+
|
547
|
+
f5.mn = 3, 3 # type: ignore[attr-defined]
|
548
|
+
f5.ref = df5 # type: ignore[attr-defined]
|
549
|
+
|
550
|
+
def rosen(x, _): return optimize.rosen(x)
|
551
|
+
rosen.mn = 5, 1 # type: ignore[attr-defined]
|
552
|
+
rosen.ref = optimize.rosen_der # type: ignore[attr-defined]
|
553
|
+
|
554
|
+
@pytest.mark.parametrize('dtype', ('float32', 'float64'))
|
555
|
+
@pytest.mark.parametrize('size', [(), (6,), (2, 3)])
|
556
|
+
@pytest.mark.parametrize('func', [f1, f2, f3, f4, f5, rosen])
|
557
|
+
def test_examples(self, dtype, size, func, xp):
|
558
|
+
atol = 1e-10 if dtype == 'float64' else 1.99e-3
|
559
|
+
dtype = getattr(xp, dtype)
|
560
|
+
rng = np.random.default_rng(458912319542)
|
561
|
+
m, n = func.mn
|
562
|
+
x = rng.random(size=(m,) + size)
|
563
|
+
res = jacobian(lambda x: func(x , xp), xp.asarray(x, dtype=dtype))
|
564
|
+
# convert list of arrays to single array before converting to xp array
|
565
|
+
ref = xp.asarray(np.asarray(func.ref(x)), dtype=dtype)
|
566
|
+
xp_assert_close(res.df, ref, atol=atol)
|
567
|
+
|
568
|
+
def test_attrs(self, xp):
|
569
|
+
# Test attributes of result object
|
570
|
+
z = xp.asarray([0.5, 0.25])
|
571
|
+
|
572
|
+
# case in which some elements of the Jacobian are harder
|
573
|
+
# to calculate than others
|
574
|
+
def df1(z):
|
575
|
+
x, y = z
|
576
|
+
return xp.stack([xp.cos(0.5*x) * xp.cos(y), xp.sin(2*x) * y**2])
|
577
|
+
|
578
|
+
def df1_0xy(x, y):
|
579
|
+
return xp.cos(0.5*x) * xp.cos(y)
|
580
|
+
|
581
|
+
def df1_1xy(x, y):
|
582
|
+
return xp.sin(2*x) * y**2
|
583
|
+
|
584
|
+
res = jacobian(df1, z, initial_step=10)
|
585
|
+
# FIXME https://github.com/scipy/scipy/pull/22320#discussion_r1914898175
|
586
|
+
if not is_torch(xp):
|
587
|
+
assert xpx.nunique(res.nit) == 4
|
588
|
+
assert xpx.nunique(res.nfev) == 4
|
589
|
+
|
590
|
+
res00 = jacobian(lambda x: df1_0xy(x, z[1]), z[0:1], initial_step=10)
|
591
|
+
res01 = jacobian(lambda y: df1_0xy(z[0], y), z[1:2], initial_step=10)
|
592
|
+
res10 = jacobian(lambda x: df1_1xy(x, z[1]), z[0:1], initial_step=10)
|
593
|
+
res11 = jacobian(lambda y: df1_1xy(z[0], y), z[1:2], initial_step=10)
|
594
|
+
ref = optimize.OptimizeResult()
|
595
|
+
for attr in ['success', 'status', 'df', 'nit', 'nfev']:
|
596
|
+
ref_attr = xp.asarray([[getattr(res00, attr), getattr(res01, attr)],
|
597
|
+
[getattr(res10, attr), getattr(res11, attr)]])
|
598
|
+
ref[attr] = xp.squeeze(
|
599
|
+
ref_attr,
|
600
|
+
axis=tuple(ax for ax, size in enumerate(ref_attr.shape) if size == 1)
|
601
|
+
)
|
602
|
+
rtol = 1.5e-5 if res[attr].dtype == xp.float32 else 1.5e-14
|
603
|
+
xp_assert_close(res[attr], ref[attr], rtol=rtol)
|
604
|
+
|
605
|
+
def test_step_direction_size(self, xp):
|
606
|
+
# Check that `step_direction` and `initial_step` can be used to ensure that
|
607
|
+
# the usable domain of a function is respected.
|
608
|
+
rng = np.random.default_rng(23892589425245)
|
609
|
+
b = rng.random(3)
|
610
|
+
eps = 1e-7 # torch needs wiggle room?
|
611
|
+
|
612
|
+
def f(x):
|
613
|
+
x = xpx.at(x)[0, x[0] < b[0]].set(xp.nan)
|
614
|
+
x = xpx.at(x)[0, x[0] > b[0] + 0.25].set(xp.nan)
|
615
|
+
x = xpx.at(x)[1, x[1] > b[1]].set(xp.nan)
|
616
|
+
x = xpx.at(x)[1, x[1] < b[1] - 0.1-eps].set(xp.nan)
|
617
|
+
return TestJacobian.f5(x, xp)
|
618
|
+
|
619
|
+
dir = [1, -1, 0]
|
620
|
+
h0 = [0.25, 0.1, 0.5]
|
621
|
+
atol = {'atol': 1e-8}
|
622
|
+
res = jacobian(f, xp.asarray(b, dtype=xp.float64), initial_step=h0,
|
623
|
+
step_direction=dir, tolerances=atol)
|
624
|
+
ref = xp.asarray(TestJacobian.df5(b), dtype=xp.float64)
|
625
|
+
xp_assert_close(res.df, ref, atol=1e-8)
|
626
|
+
assert xp.all(xp.isfinite(ref))
|
627
|
+
|
628
|
+
|
629
|
+
@pytest.mark.skip_xp_backends('array_api_strict', reason=array_api_strict_skip_reason)
|
630
|
+
@pytest.mark.skip_xp_backends('dask.array', reason='boolean indexing assignment')
|
631
|
+
class TestHessian(JacobianHessianTest):
|
632
|
+
jh_func = hessian
|
633
|
+
|
634
|
+
@pytest.mark.parametrize('shape', [(), (4,), (2, 4)])
|
635
|
+
def test_example(self, shape, xp):
|
636
|
+
rng = np.random.default_rng(458912319542)
|
637
|
+
m = 3
|
638
|
+
x = xp.asarray(rng.random((m,) + shape), dtype=xp.float64)
|
639
|
+
res = hessian(optimize.rosen, x)
|
640
|
+
if shape:
|
641
|
+
x = xp.reshape(x, (m, -1))
|
642
|
+
ref = xp.stack([optimize.rosen_hess(xi) for xi in x.T])
|
643
|
+
ref = xp.moveaxis(ref, 0, -1)
|
644
|
+
ref = xp.reshape(ref, (m, m,) + shape)
|
645
|
+
else:
|
646
|
+
ref = optimize.rosen_hess(x)
|
647
|
+
xp_assert_close(res.ddf, ref, atol=1e-8)
|
648
|
+
|
649
|
+
# # Removed symmetry enforcement; consider adding back in as a feature
|
650
|
+
# # check symmetry
|
651
|
+
# for key in ['ddf', 'error', 'nfev', 'success', 'status']:
|
652
|
+
# assert_equal(res[key], np.swapaxes(res[key], 0, 1))
|
653
|
+
|
654
|
+
def test_float32(self, xp):
|
655
|
+
rng = np.random.default_rng(458912319542)
|
656
|
+
x = xp.asarray(rng.random(3), dtype=xp.float32)
|
657
|
+
res = hessian(optimize.rosen, x)
|
658
|
+
ref = optimize.rosen_hess(x)
|
659
|
+
mask = (ref != 0)
|
660
|
+
xp_assert_close(res.ddf[mask], ref[mask])
|
661
|
+
atol = 1e-2 * xp.abs(xp.min(ref[mask]))
|
662
|
+
xp_assert_close(res.ddf[~mask], ref[~mask], atol=atol)
|
663
|
+
|
664
|
+
def test_nfev(self, xp):
|
665
|
+
z = xp.asarray([0.5, 0.25])
|
666
|
+
|
667
|
+
def f1(z):
|
668
|
+
x, y = xp.broadcast_arrays(*z)
|
669
|
+
f1.nfev = f1.nfev + (math.prod(x.shape[2:]) if x.ndim > 2 else 1)
|
670
|
+
return xp.sin(x) * y ** 3
|
671
|
+
f1.nfev = 0
|
672
|
+
|
673
|
+
|
674
|
+
res = hessian(f1, z, initial_step=10)
|
675
|
+
f1.nfev = 0
|
676
|
+
res00 = hessian(lambda x: f1([x[0], z[1]]), z[0:1], initial_step=10)
|
677
|
+
assert res.nfev[0, 0] == f1.nfev == res00.nfev[0, 0]
|
678
|
+
|
679
|
+
f1.nfev = 0
|
680
|
+
res11 = hessian(lambda y: f1([z[0], y[0]]), z[1:2], initial_step=10)
|
681
|
+
assert res.nfev[1, 1] == f1.nfev == res11.nfev[0, 0]
|
682
|
+
|
683
|
+
# Removed symmetry enforcement; consider adding back in as a feature
|
684
|
+
# assert_equal(res.nfev, res.nfev.T) # check symmetry
|
685
|
+
# assert np.unique(res.nfev).size == 3
|
686
|
+
|
687
|
+
|
688
|
+
@pytest.mark.thread_unsafe
|
689
|
+
@pytest.mark.skip_xp_backends(np_only=True,
|
690
|
+
reason='Python list input uses NumPy backend')
|
691
|
+
def test_small_rtol_warning(self, xp):
|
692
|
+
message = 'The specified `rtol=1e-15`, but...'
|
693
|
+
with pytest.warns(RuntimeWarning, match=message):
|
694
|
+
hessian(xp.sin, [1.], tolerances=dict(rtol=1e-15))
|