scipy 1.16.2__cp313-cp313t-win_arm64.whl

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Files changed (1530) hide show
  1. scipy/__config__.py +161 -0
  2. scipy/__init__.py +150 -0
  3. scipy/_cyutility.cp313t-win_arm64.lib +0 -0
  4. scipy/_cyutility.cp313t-win_arm64.pyd +0 -0
  5. scipy/_distributor_init.py +18 -0
  6. scipy/_lib/__init__.py +14 -0
  7. scipy/_lib/_array_api.py +931 -0
  8. scipy/_lib/_array_api_compat_vendor.py +9 -0
  9. scipy/_lib/_array_api_no_0d.py +103 -0
  10. scipy/_lib/_bunch.py +229 -0
  11. scipy/_lib/_ccallback.py +251 -0
  12. scipy/_lib/_ccallback_c.cp313t-win_arm64.lib +0 -0
  13. scipy/_lib/_ccallback_c.cp313t-win_arm64.pyd +0 -0
  14. scipy/_lib/_disjoint_set.py +254 -0
  15. scipy/_lib/_docscrape.py +761 -0
  16. scipy/_lib/_elementwise_iterative_method.py +346 -0
  17. scipy/_lib/_fpumode.cp313t-win_arm64.lib +0 -0
  18. scipy/_lib/_fpumode.cp313t-win_arm64.pyd +0 -0
  19. scipy/_lib/_gcutils.py +105 -0
  20. scipy/_lib/_pep440.py +487 -0
  21. scipy/_lib/_sparse.py +41 -0
  22. scipy/_lib/_test_ccallback.cp313t-win_arm64.lib +0 -0
  23. scipy/_lib/_test_ccallback.cp313t-win_arm64.pyd +0 -0
  24. scipy/_lib/_test_deprecation_call.cp313t-win_arm64.lib +0 -0
  25. scipy/_lib/_test_deprecation_call.cp313t-win_arm64.pyd +0 -0
  26. scipy/_lib/_test_deprecation_def.cp313t-win_arm64.lib +0 -0
  27. scipy/_lib/_test_deprecation_def.cp313t-win_arm64.pyd +0 -0
  28. scipy/_lib/_testutils.py +373 -0
  29. scipy/_lib/_threadsafety.py +58 -0
  30. scipy/_lib/_tmpdirs.py +86 -0
  31. scipy/_lib/_uarray/LICENSE +29 -0
  32. scipy/_lib/_uarray/__init__.py +116 -0
  33. scipy/_lib/_uarray/_backend.py +707 -0
  34. scipy/_lib/_uarray/_uarray.cp313t-win_arm64.lib +0 -0
  35. scipy/_lib/_uarray/_uarray.cp313t-win_arm64.pyd +0 -0
  36. scipy/_lib/_util.py +1283 -0
  37. scipy/_lib/array_api_compat/__init__.py +22 -0
  38. scipy/_lib/array_api_compat/_internal.py +59 -0
  39. scipy/_lib/array_api_compat/common/__init__.py +1 -0
  40. scipy/_lib/array_api_compat/common/_aliases.py +727 -0
  41. scipy/_lib/array_api_compat/common/_fft.py +213 -0
  42. scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
  43. scipy/_lib/array_api_compat/common/_linalg.py +232 -0
  44. scipy/_lib/array_api_compat/common/_typing.py +192 -0
  45. scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
  46. scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
  47. scipy/_lib/array_api_compat/cupy/_info.py +336 -0
  48. scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
  49. scipy/_lib/array_api_compat/cupy/fft.py +36 -0
  50. scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
  51. scipy/_lib/array_api_compat/dask/__init__.py +0 -0
  52. scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
  53. scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
  54. scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
  55. scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
  56. scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
  57. scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
  58. scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
  59. scipy/_lib/array_api_compat/numpy/_info.py +366 -0
  60. scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
  61. scipy/_lib/array_api_compat/numpy/fft.py +35 -0
  62. scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
  63. scipy/_lib/array_api_compat/torch/__init__.py +22 -0
  64. scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
  65. scipy/_lib/array_api_compat/torch/_info.py +369 -0
  66. scipy/_lib/array_api_compat/torch/_typing.py +3 -0
  67. scipy/_lib/array_api_compat/torch/fft.py +85 -0
  68. scipy/_lib/array_api_compat/torch/linalg.py +121 -0
  69. scipy/_lib/array_api_extra/__init__.py +38 -0
  70. scipy/_lib/array_api_extra/_delegation.py +171 -0
  71. scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
  72. scipy/_lib/array_api_extra/_lib/_at.py +463 -0
  73. scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
  74. scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
  75. scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
  76. scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
  77. scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
  78. scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
  79. scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
  80. scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
  81. scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
  82. scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
  83. scipy/_lib/array_api_extra/testing.py +359 -0
  84. scipy/_lib/cobyqa/__init__.py +20 -0
  85. scipy/_lib/cobyqa/framework.py +1240 -0
  86. scipy/_lib/cobyqa/main.py +1506 -0
  87. scipy/_lib/cobyqa/models.py +1529 -0
  88. scipy/_lib/cobyqa/problem.py +1296 -0
  89. scipy/_lib/cobyqa/settings.py +132 -0
  90. scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
  91. scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
  92. scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
  93. scipy/_lib/cobyqa/utils/__init__.py +18 -0
  94. scipy/_lib/cobyqa/utils/exceptions.py +22 -0
  95. scipy/_lib/cobyqa/utils/math.py +77 -0
  96. scipy/_lib/cobyqa/utils/versions.py +67 -0
  97. scipy/_lib/decorator.py +399 -0
  98. scipy/_lib/deprecation.py +274 -0
  99. scipy/_lib/doccer.py +366 -0
  100. scipy/_lib/messagestream.cp313t-win_arm64.lib +0 -0
  101. scipy/_lib/messagestream.cp313t-win_arm64.pyd +0 -0
  102. scipy/_lib/pyprima/__init__.py +212 -0
  103. scipy/_lib/pyprima/cobyla/__init__.py +0 -0
  104. scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
  105. scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
  106. scipy/_lib/pyprima/cobyla/geometry.py +226 -0
  107. scipy/_lib/pyprima/cobyla/initialize.py +215 -0
  108. scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
  109. scipy/_lib/pyprima/cobyla/update.py +289 -0
  110. scipy/_lib/pyprima/common/__init__.py +0 -0
  111. scipy/_lib/pyprima/common/_bounds.py +34 -0
  112. scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
  113. scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
  114. scipy/_lib/pyprima/common/_project.py +173 -0
  115. scipy/_lib/pyprima/common/checkbreak.py +93 -0
  116. scipy/_lib/pyprima/common/consts.py +47 -0
  117. scipy/_lib/pyprima/common/evaluate.py +99 -0
  118. scipy/_lib/pyprima/common/history.py +38 -0
  119. scipy/_lib/pyprima/common/infos.py +30 -0
  120. scipy/_lib/pyprima/common/linalg.py +435 -0
  121. scipy/_lib/pyprima/common/message.py +290 -0
  122. scipy/_lib/pyprima/common/powalg.py +131 -0
  123. scipy/_lib/pyprima/common/preproc.py +277 -0
  124. scipy/_lib/pyprima/common/present.py +5 -0
  125. scipy/_lib/pyprima/common/ratio.py +54 -0
  126. scipy/_lib/pyprima/common/redrho.py +47 -0
  127. scipy/_lib/pyprima/common/selectx.py +296 -0
  128. scipy/_lib/tests/__init__.py +0 -0
  129. scipy/_lib/tests/test__gcutils.py +110 -0
  130. scipy/_lib/tests/test__pep440.py +67 -0
  131. scipy/_lib/tests/test__testutils.py +32 -0
  132. scipy/_lib/tests/test__threadsafety.py +51 -0
  133. scipy/_lib/tests/test__util.py +641 -0
  134. scipy/_lib/tests/test_array_api.py +322 -0
  135. scipy/_lib/tests/test_bunch.py +169 -0
  136. scipy/_lib/tests/test_ccallback.py +196 -0
  137. scipy/_lib/tests/test_config.py +45 -0
  138. scipy/_lib/tests/test_deprecation.py +10 -0
  139. scipy/_lib/tests/test_doccer.py +143 -0
  140. scipy/_lib/tests/test_import_cycles.py +18 -0
  141. scipy/_lib/tests/test_public_api.py +482 -0
  142. scipy/_lib/tests/test_scipy_version.py +28 -0
  143. scipy/_lib/tests/test_tmpdirs.py +48 -0
  144. scipy/_lib/tests/test_warnings.py +137 -0
  145. scipy/_lib/uarray.py +31 -0
  146. scipy/cluster/__init__.py +31 -0
  147. scipy/cluster/_hierarchy.cp313t-win_arm64.lib +0 -0
  148. scipy/cluster/_hierarchy.cp313t-win_arm64.pyd +0 -0
  149. scipy/cluster/_optimal_leaf_ordering.cp313t-win_arm64.lib +0 -0
  150. scipy/cluster/_optimal_leaf_ordering.cp313t-win_arm64.pyd +0 -0
  151. scipy/cluster/_vq.cp313t-win_arm64.lib +0 -0
  152. scipy/cluster/_vq.cp313t-win_arm64.pyd +0 -0
  153. scipy/cluster/hierarchy.py +4348 -0
  154. scipy/cluster/tests/__init__.py +0 -0
  155. scipy/cluster/tests/hierarchy_test_data.py +145 -0
  156. scipy/cluster/tests/test_disjoint_set.py +202 -0
  157. scipy/cluster/tests/test_hierarchy.py +1238 -0
  158. scipy/cluster/tests/test_vq.py +434 -0
  159. scipy/cluster/vq.py +832 -0
  160. scipy/conftest.py +683 -0
  161. scipy/constants/__init__.py +358 -0
  162. scipy/constants/_codata.py +2266 -0
  163. scipy/constants/_constants.py +369 -0
  164. scipy/constants/codata.py +21 -0
  165. scipy/constants/constants.py +53 -0
  166. scipy/constants/tests/__init__.py +0 -0
  167. scipy/constants/tests/test_codata.py +78 -0
  168. scipy/constants/tests/test_constants.py +83 -0
  169. scipy/datasets/__init__.py +90 -0
  170. scipy/datasets/_download_all.py +71 -0
  171. scipy/datasets/_fetchers.py +225 -0
  172. scipy/datasets/_registry.py +26 -0
  173. scipy/datasets/_utils.py +81 -0
  174. scipy/datasets/tests/__init__.py +0 -0
  175. scipy/datasets/tests/test_data.py +128 -0
  176. scipy/differentiate/__init__.py +27 -0
  177. scipy/differentiate/_differentiate.py +1129 -0
  178. scipy/differentiate/tests/__init__.py +0 -0
  179. scipy/differentiate/tests/test_differentiate.py +694 -0
  180. scipy/fft/__init__.py +114 -0
  181. scipy/fft/_backend.py +196 -0
  182. scipy/fft/_basic.py +1650 -0
  183. scipy/fft/_basic_backend.py +197 -0
  184. scipy/fft/_debug_backends.py +22 -0
  185. scipy/fft/_fftlog.py +223 -0
  186. scipy/fft/_fftlog_backend.py +200 -0
  187. scipy/fft/_helper.py +348 -0
  188. scipy/fft/_pocketfft/LICENSE.md +25 -0
  189. scipy/fft/_pocketfft/__init__.py +9 -0
  190. scipy/fft/_pocketfft/basic.py +251 -0
  191. scipy/fft/_pocketfft/helper.py +249 -0
  192. scipy/fft/_pocketfft/pypocketfft.cp313t-win_arm64.lib +0 -0
  193. scipy/fft/_pocketfft/pypocketfft.cp313t-win_arm64.pyd +0 -0
  194. scipy/fft/_pocketfft/realtransforms.py +109 -0
  195. scipy/fft/_pocketfft/tests/__init__.py +0 -0
  196. scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
  197. scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
  198. scipy/fft/_realtransforms.py +706 -0
  199. scipy/fft/_realtransforms_backend.py +63 -0
  200. scipy/fft/tests/__init__.py +0 -0
  201. scipy/fft/tests/mock_backend.py +96 -0
  202. scipy/fft/tests/test_backend.py +98 -0
  203. scipy/fft/tests/test_basic.py +504 -0
  204. scipy/fft/tests/test_fftlog.py +215 -0
  205. scipy/fft/tests/test_helper.py +558 -0
  206. scipy/fft/tests/test_multithreading.py +84 -0
  207. scipy/fft/tests/test_real_transforms.py +247 -0
  208. scipy/fftpack/__init__.py +103 -0
  209. scipy/fftpack/_basic.py +428 -0
  210. scipy/fftpack/_helper.py +115 -0
  211. scipy/fftpack/_pseudo_diffs.py +554 -0
  212. scipy/fftpack/_realtransforms.py +598 -0
  213. scipy/fftpack/basic.py +20 -0
  214. scipy/fftpack/convolve.cp313t-win_arm64.lib +0 -0
  215. scipy/fftpack/convolve.cp313t-win_arm64.pyd +0 -0
  216. scipy/fftpack/helper.py +19 -0
  217. scipy/fftpack/pseudo_diffs.py +22 -0
  218. scipy/fftpack/realtransforms.py +19 -0
  219. scipy/fftpack/tests/__init__.py +0 -0
  220. scipy/fftpack/tests/fftw_double_ref.npz +0 -0
  221. scipy/fftpack/tests/fftw_longdouble_ref.npz +0 -0
  222. scipy/fftpack/tests/fftw_single_ref.npz +0 -0
  223. scipy/fftpack/tests/test.npz +0 -0
  224. scipy/fftpack/tests/test_basic.py +877 -0
  225. scipy/fftpack/tests/test_helper.py +54 -0
  226. scipy/fftpack/tests/test_import.py +33 -0
  227. scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
  228. scipy/fftpack/tests/test_real_transforms.py +836 -0
  229. scipy/integrate/__init__.py +122 -0
  230. scipy/integrate/_bvp.py +1160 -0
  231. scipy/integrate/_cubature.py +729 -0
  232. scipy/integrate/_dop.cp313t-win_arm64.lib +0 -0
  233. scipy/integrate/_dop.cp313t-win_arm64.pyd +0 -0
  234. scipy/integrate/_ivp/__init__.py +8 -0
  235. scipy/integrate/_ivp/base.py +290 -0
  236. scipy/integrate/_ivp/bdf.py +478 -0
  237. scipy/integrate/_ivp/common.py +451 -0
  238. scipy/integrate/_ivp/dop853_coefficients.py +193 -0
  239. scipy/integrate/_ivp/ivp.py +755 -0
  240. scipy/integrate/_ivp/lsoda.py +224 -0
  241. scipy/integrate/_ivp/radau.py +572 -0
  242. scipy/integrate/_ivp/rk.py +601 -0
  243. scipy/integrate/_ivp/tests/__init__.py +0 -0
  244. scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
  245. scipy/integrate/_ivp/tests/test_rk.py +37 -0
  246. scipy/integrate/_lebedev.py +5450 -0
  247. scipy/integrate/_lsoda.cp313t-win_arm64.lib +0 -0
  248. scipy/integrate/_lsoda.cp313t-win_arm64.pyd +0 -0
  249. scipy/integrate/_ode.py +1395 -0
  250. scipy/integrate/_odepack.cp313t-win_arm64.lib +0 -0
  251. scipy/integrate/_odepack.cp313t-win_arm64.pyd +0 -0
  252. scipy/integrate/_odepack_py.py +273 -0
  253. scipy/integrate/_quad_vec.py +674 -0
  254. scipy/integrate/_quadpack.cp313t-win_arm64.lib +0 -0
  255. scipy/integrate/_quadpack.cp313t-win_arm64.pyd +0 -0
  256. scipy/integrate/_quadpack_py.py +1283 -0
  257. scipy/integrate/_quadrature.py +1336 -0
  258. scipy/integrate/_rules/__init__.py +12 -0
  259. scipy/integrate/_rules/_base.py +518 -0
  260. scipy/integrate/_rules/_gauss_kronrod.py +202 -0
  261. scipy/integrate/_rules/_gauss_legendre.py +62 -0
  262. scipy/integrate/_rules/_genz_malik.py +210 -0
  263. scipy/integrate/_tanhsinh.py +1385 -0
  264. scipy/integrate/_test_multivariate.cp313t-win_arm64.lib +0 -0
  265. scipy/integrate/_test_multivariate.cp313t-win_arm64.pyd +0 -0
  266. scipy/integrate/_test_odeint_banded.cp313t-win_arm64.lib +0 -0
  267. scipy/integrate/_test_odeint_banded.cp313t-win_arm64.pyd +0 -0
  268. scipy/integrate/_vode.cp313t-win_arm64.lib +0 -0
  269. scipy/integrate/_vode.cp313t-win_arm64.pyd +0 -0
  270. scipy/integrate/dop.py +15 -0
  271. scipy/integrate/lsoda.py +15 -0
  272. scipy/integrate/odepack.py +17 -0
  273. scipy/integrate/quadpack.py +23 -0
  274. scipy/integrate/tests/__init__.py +0 -0
  275. scipy/integrate/tests/test__quad_vec.py +211 -0
  276. scipy/integrate/tests/test_banded_ode_solvers.py +305 -0
  277. scipy/integrate/tests/test_bvp.py +714 -0
  278. scipy/integrate/tests/test_cubature.py +1375 -0
  279. scipy/integrate/tests/test_integrate.py +840 -0
  280. scipy/integrate/tests/test_odeint_jac.py +74 -0
  281. scipy/integrate/tests/test_quadpack.py +680 -0
  282. scipy/integrate/tests/test_quadrature.py +730 -0
  283. scipy/integrate/tests/test_tanhsinh.py +1171 -0
  284. scipy/integrate/vode.py +15 -0
  285. scipy/interpolate/__init__.py +228 -0
  286. scipy/interpolate/_bary_rational.py +715 -0
  287. scipy/interpolate/_bsplines.py +2469 -0
  288. scipy/interpolate/_cubic.py +973 -0
  289. scipy/interpolate/_dfitpack.cp313t-win_arm64.lib +0 -0
  290. scipy/interpolate/_dfitpack.cp313t-win_arm64.pyd +0 -0
  291. scipy/interpolate/_dierckx.cp313t-win_arm64.lib +0 -0
  292. scipy/interpolate/_dierckx.cp313t-win_arm64.pyd +0 -0
  293. scipy/interpolate/_fitpack.cp313t-win_arm64.lib +0 -0
  294. scipy/interpolate/_fitpack.cp313t-win_arm64.pyd +0 -0
  295. scipy/interpolate/_fitpack2.py +2397 -0
  296. scipy/interpolate/_fitpack_impl.py +811 -0
  297. scipy/interpolate/_fitpack_py.py +898 -0
  298. scipy/interpolate/_fitpack_repro.py +996 -0
  299. scipy/interpolate/_interpnd.cp313t-win_arm64.lib +0 -0
  300. scipy/interpolate/_interpnd.cp313t-win_arm64.pyd +0 -0
  301. scipy/interpolate/_interpolate.py +2266 -0
  302. scipy/interpolate/_ndbspline.py +415 -0
  303. scipy/interpolate/_ndgriddata.py +329 -0
  304. scipy/interpolate/_pade.py +67 -0
  305. scipy/interpolate/_polyint.py +1025 -0
  306. scipy/interpolate/_ppoly.cp313t-win_arm64.lib +0 -0
  307. scipy/interpolate/_ppoly.cp313t-win_arm64.pyd +0 -0
  308. scipy/interpolate/_rbf.py +290 -0
  309. scipy/interpolate/_rbfinterp.py +550 -0
  310. scipy/interpolate/_rbfinterp_pythran.cp313t-win_arm64.lib +0 -0
  311. scipy/interpolate/_rbfinterp_pythran.cp313t-win_arm64.pyd +0 -0
  312. scipy/interpolate/_rgi.py +764 -0
  313. scipy/interpolate/_rgi_cython.cp313t-win_arm64.lib +0 -0
  314. scipy/interpolate/_rgi_cython.cp313t-win_arm64.pyd +0 -0
  315. scipy/interpolate/dfitpack.py +24 -0
  316. scipy/interpolate/fitpack.py +31 -0
  317. scipy/interpolate/fitpack2.py +29 -0
  318. scipy/interpolate/interpnd.py +24 -0
  319. scipy/interpolate/interpolate.py +30 -0
  320. scipy/interpolate/ndgriddata.py +23 -0
  321. scipy/interpolate/polyint.py +24 -0
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  1511. scipy/stats/tests/test_odds_ratio.py +148 -0
  1512. scipy/stats/tests/test_qmc.py +1492 -0
  1513. scipy/stats/tests/test_quantile.py +199 -0
  1514. scipy/stats/tests/test_rank.py +345 -0
  1515. scipy/stats/tests/test_relative_risk.py +95 -0
  1516. scipy/stats/tests/test_resampling.py +2000 -0
  1517. scipy/stats/tests/test_sampling.py +1450 -0
  1518. scipy/stats/tests/test_sensitivity_analysis.py +310 -0
  1519. scipy/stats/tests/test_stats.py +9707 -0
  1520. scipy/stats/tests/test_survival.py +466 -0
  1521. scipy/stats/tests/test_tukeylambda_stats.py +85 -0
  1522. scipy/stats/tests/test_variation.py +216 -0
  1523. scipy/version.py +12 -0
  1524. scipy-1.16.2.dist-info/DELVEWHEEL +2 -0
  1525. scipy-1.16.2.dist-info/LICENSE.txt +912 -0
  1526. scipy-1.16.2.dist-info/METADATA +1061 -0
  1527. scipy-1.16.2.dist-info/RECORD +1530 -0
  1528. scipy-1.16.2.dist-info/WHEEL +4 -0
  1529. scipy.libs/msvcp140-5f1c5dd31916990d94181e07bc3afb32.dll +0 -0
  1530. scipy.libs/scipy_openblas-f3ac85b1f412f7e86514c923dc4058d1.dll +0 -0
@@ -0,0 +1,714 @@
1
+ import sys
2
+
3
+ try:
4
+ from StringIO import StringIO
5
+ except ImportError:
6
+ from io import StringIO
7
+
8
+ import numpy as np
9
+ from numpy.testing import (assert_, assert_array_equal, assert_allclose,
10
+ assert_equal)
11
+ from pytest import raises as assert_raises
12
+
13
+ from scipy.sparse import coo_matrix
14
+ from scipy.special import erf
15
+ from scipy.integrate._bvp import (modify_mesh, estimate_fun_jac,
16
+ estimate_bc_jac, compute_jac_indices,
17
+ construct_global_jac, solve_bvp)
18
+
19
+ import pytest
20
+
21
+
22
+ def exp_fun(x, y):
23
+ return np.vstack((y[1], y[0]))
24
+
25
+
26
+ def exp_fun_jac(x, y):
27
+ df_dy = np.empty((2, 2, x.shape[0]))
28
+ df_dy[0, 0] = 0
29
+ df_dy[0, 1] = 1
30
+ df_dy[1, 0] = 1
31
+ df_dy[1, 1] = 0
32
+ return df_dy
33
+
34
+
35
+ def exp_bc(ya, yb):
36
+ return np.hstack((ya[0] - 1, yb[0]))
37
+
38
+
39
+ def exp_bc_complex(ya, yb):
40
+ return np.hstack((ya[0] - 1 - 1j, yb[0]))
41
+
42
+
43
+ def exp_bc_jac(ya, yb):
44
+ dbc_dya = np.array([
45
+ [1, 0],
46
+ [0, 0]
47
+ ])
48
+ dbc_dyb = np.array([
49
+ [0, 0],
50
+ [1, 0]
51
+ ])
52
+ return dbc_dya, dbc_dyb
53
+
54
+
55
+ def exp_sol(x):
56
+ return (np.exp(-x) - np.exp(x - 2)) / (1 - np.exp(-2))
57
+
58
+
59
+ def sl_fun(x, y, p):
60
+ return np.vstack((y[1], -p[0]**2 * y[0]))
61
+
62
+
63
+ def sl_fun_jac(x, y, p):
64
+ n, m = y.shape
65
+ df_dy = np.empty((n, 2, m))
66
+ df_dy[0, 0] = 0
67
+ df_dy[0, 1] = 1
68
+ df_dy[1, 0] = -p[0]**2
69
+ df_dy[1, 1] = 0
70
+
71
+ df_dp = np.empty((n, 1, m))
72
+ df_dp[0, 0] = 0
73
+ df_dp[1, 0] = -2 * p[0] * y[0]
74
+
75
+ return df_dy, df_dp
76
+
77
+
78
+ def sl_bc(ya, yb, p):
79
+ return np.hstack((ya[0], yb[0], ya[1] - p[0]))
80
+
81
+
82
+ def sl_bc_jac(ya, yb, p):
83
+ dbc_dya = np.zeros((3, 2))
84
+ dbc_dya[0, 0] = 1
85
+ dbc_dya[2, 1] = 1
86
+
87
+ dbc_dyb = np.zeros((3, 2))
88
+ dbc_dyb[1, 0] = 1
89
+
90
+ dbc_dp = np.zeros((3, 1))
91
+ dbc_dp[2, 0] = -1
92
+
93
+ return dbc_dya, dbc_dyb, dbc_dp
94
+
95
+
96
+ def sl_sol(x, p):
97
+ return np.sin(p[0] * x)
98
+
99
+
100
+ def emden_fun(x, y):
101
+ return np.vstack((y[1], -y[0]**5))
102
+
103
+
104
+ def emden_fun_jac(x, y):
105
+ df_dy = np.empty((2, 2, x.shape[0]))
106
+ df_dy[0, 0] = 0
107
+ df_dy[0, 1] = 1
108
+ df_dy[1, 0] = -5 * y[0]**4
109
+ df_dy[1, 1] = 0
110
+ return df_dy
111
+
112
+
113
+ def emden_bc(ya, yb):
114
+ return np.array([ya[1], yb[0] - (3/4)**0.5])
115
+
116
+
117
+ def emden_bc_jac(ya, yb):
118
+ dbc_dya = np.array([
119
+ [0, 1],
120
+ [0, 0]
121
+ ])
122
+ dbc_dyb = np.array([
123
+ [0, 0],
124
+ [1, 0]
125
+ ])
126
+ return dbc_dya, dbc_dyb
127
+
128
+
129
+ def emden_sol(x):
130
+ return (1 + x**2/3)**-0.5
131
+
132
+
133
+ def undefined_fun(x, y):
134
+ return np.zeros_like(y)
135
+
136
+
137
+ def undefined_bc(ya, yb):
138
+ return np.array([ya[0], yb[0] - 1])
139
+
140
+
141
+ def big_fun(x, y):
142
+ f = np.zeros_like(y)
143
+ f[::2] = y[1::2]
144
+ return f
145
+
146
+
147
+ def big_bc(ya, yb):
148
+ return np.hstack((ya[::2], yb[::2] - 1))
149
+
150
+
151
+ def big_sol(x, n):
152
+ y = np.ones((2 * n, x.size))
153
+ y[::2] = x
154
+ return x
155
+
156
+
157
+ def big_fun_with_parameters(x, y, p):
158
+ """ Big version of sl_fun, with two parameters.
159
+
160
+ The two differential equations represented by sl_fun are broadcast to the
161
+ number of rows of y, rotating between the parameters p[0] and p[1].
162
+ Here are the differential equations:
163
+
164
+ dy[0]/dt = y[1]
165
+ dy[1]/dt = -p[0]**2 * y[0]
166
+ dy[2]/dt = y[3]
167
+ dy[3]/dt = -p[1]**2 * y[2]
168
+ dy[4]/dt = y[5]
169
+ dy[5]/dt = -p[0]**2 * y[4]
170
+ dy[6]/dt = y[7]
171
+ dy[7]/dt = -p[1]**2 * y[6]
172
+ .
173
+ .
174
+ .
175
+
176
+ """
177
+ f = np.zeros_like(y)
178
+ f[::2] = y[1::2]
179
+ f[1::4] = -p[0]**2 * y[::4]
180
+ f[3::4] = -p[1]**2 * y[2::4]
181
+ return f
182
+
183
+
184
+ def big_fun_with_parameters_jac(x, y, p):
185
+ # big version of sl_fun_jac, with two parameters
186
+ n, m = y.shape
187
+ df_dy = np.zeros((n, n, m))
188
+ df_dy[range(0, n, 2), range(1, n, 2)] = 1
189
+ df_dy[range(1, n, 4), range(0, n, 4)] = -p[0]**2
190
+ df_dy[range(3, n, 4), range(2, n, 4)] = -p[1]**2
191
+
192
+ df_dp = np.zeros((n, 2, m))
193
+ df_dp[range(1, n, 4), 0] = -2 * p[0] * y[range(0, n, 4)]
194
+ df_dp[range(3, n, 4), 1] = -2 * p[1] * y[range(2, n, 4)]
195
+
196
+ return df_dy, df_dp
197
+
198
+
199
+ def big_bc_with_parameters(ya, yb, p):
200
+ # big version of sl_bc, with two parameters
201
+ return np.hstack((ya[::2], yb[::2], ya[1] - p[0], ya[3] - p[1]))
202
+
203
+
204
+ def big_bc_with_parameters_jac(ya, yb, p):
205
+ # big version of sl_bc_jac, with two parameters
206
+ n = ya.shape[0]
207
+ dbc_dya = np.zeros((n + 2, n))
208
+ dbc_dyb = np.zeros((n + 2, n))
209
+
210
+ dbc_dya[range(n // 2), range(0, n, 2)] = 1
211
+ dbc_dyb[range(n // 2, n), range(0, n, 2)] = 1
212
+
213
+ dbc_dp = np.zeros((n + 2, 2))
214
+ dbc_dp[n, 0] = -1
215
+ dbc_dya[n, 1] = 1
216
+ dbc_dp[n + 1, 1] = -1
217
+ dbc_dya[n + 1, 3] = 1
218
+
219
+ return dbc_dya, dbc_dyb, dbc_dp
220
+
221
+
222
+ def big_sol_with_parameters(x, p):
223
+ # big version of sl_sol, with two parameters
224
+ return np.vstack((np.sin(p[0] * x), np.sin(p[1] * x)))
225
+
226
+
227
+ def shock_fun(x, y):
228
+ eps = 1e-3
229
+ return np.vstack((
230
+ y[1],
231
+ -(x * y[1] + eps * np.pi**2 * np.cos(np.pi * x) +
232
+ np.pi * x * np.sin(np.pi * x)) / eps
233
+ ))
234
+
235
+
236
+ def shock_bc(ya, yb):
237
+ return np.array([ya[0] + 2, yb[0]])
238
+
239
+
240
+ def shock_sol(x):
241
+ eps = 1e-3
242
+ k = np.sqrt(2 * eps)
243
+ return np.cos(np.pi * x) + erf(x / k) / erf(1 / k)
244
+
245
+
246
+ def nonlin_bc_fun(x, y):
247
+ # laplace eq.
248
+ return np.stack([y[1], np.zeros_like(x)])
249
+
250
+
251
+ def nonlin_bc_bc(ya, yb):
252
+ phiA, phipA = ya
253
+ phiC, phipC = yb
254
+
255
+ kappa, ioA, ioC, V, f = 1.64, 0.01, 1.0e-4, 0.5, 38.9
256
+
257
+ # Butler-Volmer Kinetics at Anode
258
+ hA = 0.0-phiA-0.0
259
+ iA = ioA * (np.exp(f*hA) - np.exp(-f*hA))
260
+ res0 = iA + kappa * phipA
261
+
262
+ # Butler-Volmer Kinetics at Cathode
263
+ hC = V - phiC - 1.0
264
+ iC = ioC * (np.exp(f*hC) - np.exp(-f*hC))
265
+ res1 = iC - kappa*phipC
266
+
267
+ return np.array([res0, res1])
268
+
269
+
270
+ def nonlin_bc_sol(x):
271
+ return -0.13426436116763119 - 1.1308709 * x
272
+
273
+
274
+ def test_modify_mesh():
275
+ x = np.array([0, 1, 3, 9], dtype=float)
276
+ x_new = modify_mesh(x, np.array([0]), np.array([2]))
277
+ assert_array_equal(x_new, np.array([0, 0.5, 1, 3, 5, 7, 9]))
278
+
279
+ x = np.array([-6, -3, 0, 3, 6], dtype=float)
280
+ x_new = modify_mesh(x, np.array([1], dtype=int), np.array([0, 2, 3]))
281
+ assert_array_equal(x_new, [-6, -5, -4, -3, -1.5, 0, 1, 2, 3, 4, 5, 6])
282
+
283
+
284
+ def test_compute_fun_jac():
285
+ x = np.linspace(0, 1, 5)
286
+ y = np.empty((2, x.shape[0]))
287
+ y[0] = 0.01
288
+ y[1] = 0.02
289
+ p = np.array([])
290
+ df_dy, df_dp = estimate_fun_jac(lambda x, y, p: exp_fun(x, y), x, y, p)
291
+ df_dy_an = exp_fun_jac(x, y)
292
+ assert_allclose(df_dy, df_dy_an)
293
+ assert_(df_dp is None)
294
+
295
+ x = np.linspace(0, np.pi, 5)
296
+ y = np.empty((2, x.shape[0]))
297
+ y[0] = np.sin(x)
298
+ y[1] = np.cos(x)
299
+ p = np.array([1.0])
300
+ df_dy, df_dp = estimate_fun_jac(sl_fun, x, y, p)
301
+ df_dy_an, df_dp_an = sl_fun_jac(x, y, p)
302
+ assert_allclose(df_dy, df_dy_an)
303
+ assert_allclose(df_dp, df_dp_an)
304
+
305
+ x = np.linspace(0, 1, 10)
306
+ y = np.empty((2, x.shape[0]))
307
+ y[0] = (3/4)**0.5
308
+ y[1] = 1e-4
309
+ p = np.array([])
310
+ df_dy, df_dp = estimate_fun_jac(lambda x, y, p: emden_fun(x, y), x, y, p)
311
+ df_dy_an = emden_fun_jac(x, y)
312
+ assert_allclose(df_dy, df_dy_an)
313
+ assert_(df_dp is None)
314
+
315
+
316
+ def test_compute_bc_jac():
317
+ ya = np.array([-1.0, 2])
318
+ yb = np.array([0.5, 3])
319
+ p = np.array([])
320
+ dbc_dya, dbc_dyb, dbc_dp = estimate_bc_jac(
321
+ lambda ya, yb, p: exp_bc(ya, yb), ya, yb, p)
322
+ dbc_dya_an, dbc_dyb_an = exp_bc_jac(ya, yb)
323
+ assert_allclose(dbc_dya, dbc_dya_an)
324
+ assert_allclose(dbc_dyb, dbc_dyb_an)
325
+ assert_(dbc_dp is None)
326
+
327
+ ya = np.array([0.0, 1])
328
+ yb = np.array([0.0, -1])
329
+ p = np.array([0.5])
330
+ dbc_dya, dbc_dyb, dbc_dp = estimate_bc_jac(sl_bc, ya, yb, p)
331
+ dbc_dya_an, dbc_dyb_an, dbc_dp_an = sl_bc_jac(ya, yb, p)
332
+ assert_allclose(dbc_dya, dbc_dya_an)
333
+ assert_allclose(dbc_dyb, dbc_dyb_an)
334
+ assert_allclose(dbc_dp, dbc_dp_an)
335
+
336
+ ya = np.array([0.5, 100])
337
+ yb = np.array([-1000, 10.5])
338
+ p = np.array([])
339
+ dbc_dya, dbc_dyb, dbc_dp = estimate_bc_jac(
340
+ lambda ya, yb, p: emden_bc(ya, yb), ya, yb, p)
341
+ dbc_dya_an, dbc_dyb_an = emden_bc_jac(ya, yb)
342
+ assert_allclose(dbc_dya, dbc_dya_an)
343
+ assert_allclose(dbc_dyb, dbc_dyb_an)
344
+ assert_(dbc_dp is None)
345
+
346
+
347
+ def test_compute_jac_indices():
348
+ n = 2
349
+ m = 4
350
+ k = 2
351
+ i, j = compute_jac_indices(n, m, k)
352
+ s = coo_matrix((np.ones_like(i), (i, j))).toarray()
353
+ s_true = np.array([
354
+ [1, 1, 1, 1, 0, 0, 0, 0, 1, 1],
355
+ [1, 1, 1, 1, 0, 0, 0, 0, 1, 1],
356
+ [0, 0, 1, 1, 1, 1, 0, 0, 1, 1],
357
+ [0, 0, 1, 1, 1, 1, 0, 0, 1, 1],
358
+ [0, 0, 0, 0, 1, 1, 1, 1, 1, 1],
359
+ [0, 0, 0, 0, 1, 1, 1, 1, 1, 1],
360
+ [1, 1, 0, 0, 0, 0, 1, 1, 1, 1],
361
+ [1, 1, 0, 0, 0, 0, 1, 1, 1, 1],
362
+ [1, 1, 0, 0, 0, 0, 1, 1, 1, 1],
363
+ [1, 1, 0, 0, 0, 0, 1, 1, 1, 1],
364
+ ])
365
+ assert_array_equal(s, s_true)
366
+
367
+
368
+ def test_compute_global_jac():
369
+ n = 2
370
+ m = 5
371
+ k = 1
372
+ i_jac, j_jac = compute_jac_indices(2, 5, 1)
373
+ x = np.linspace(0, 1, 5)
374
+ h = np.diff(x)
375
+ y = np.vstack((np.sin(np.pi * x), np.pi * np.cos(np.pi * x)))
376
+ p = np.array([3.0])
377
+
378
+ f = sl_fun(x, y, p)
379
+
380
+ x_middle = x[:-1] + 0.5 * h
381
+ y_middle = 0.5 * (y[:, :-1] + y[:, 1:]) - h/8 * (f[:, 1:] - f[:, :-1])
382
+
383
+ df_dy, df_dp = sl_fun_jac(x, y, p)
384
+ df_dy_middle, df_dp_middle = sl_fun_jac(x_middle, y_middle, p)
385
+ dbc_dya, dbc_dyb, dbc_dp = sl_bc_jac(y[:, 0], y[:, -1], p)
386
+
387
+ J = construct_global_jac(n, m, k, i_jac, j_jac, h, df_dy, df_dy_middle,
388
+ df_dp, df_dp_middle, dbc_dya, dbc_dyb, dbc_dp)
389
+ J = J.toarray()
390
+
391
+ def J_block(h, p):
392
+ return np.array([
393
+ [h**2*p**2/12 - 1, -0.5*h, -h**2*p**2/12 + 1, -0.5*h],
394
+ [0.5*h*p**2, h**2*p**2/12 - 1, 0.5*h*p**2, 1 - h**2*p**2/12]
395
+ ])
396
+
397
+ J_true = np.zeros((m * n + k, m * n + k))
398
+ for i in range(m - 1):
399
+ J_true[i * n: (i + 1) * n, i * n: (i + 2) * n] = J_block(h[i], p[0])
400
+
401
+ J_true[:(m - 1) * n:2, -1] = p * h**2/6 * (y[0, :-1] - y[0, 1:])
402
+ J_true[1:(m - 1) * n:2, -1] = p * (h * (y[0, :-1] + y[0, 1:]) +
403
+ h**2/6 * (y[1, :-1] - y[1, 1:]))
404
+
405
+ J_true[8, 0] = 1
406
+ J_true[9, 8] = 1
407
+ J_true[10, 1] = 1
408
+ J_true[10, 10] = -1
409
+
410
+ assert_allclose(J, J_true, rtol=1e-10)
411
+
412
+ df_dy, df_dp = estimate_fun_jac(sl_fun, x, y, p)
413
+ df_dy_middle, df_dp_middle = estimate_fun_jac(sl_fun, x_middle, y_middle, p)
414
+ dbc_dya, dbc_dyb, dbc_dp = estimate_bc_jac(sl_bc, y[:, 0], y[:, -1], p)
415
+ J = construct_global_jac(n, m, k, i_jac, j_jac, h, df_dy, df_dy_middle,
416
+ df_dp, df_dp_middle, dbc_dya, dbc_dyb, dbc_dp)
417
+ J = J.toarray()
418
+ assert_allclose(J, J_true, rtol=2e-8, atol=2e-8)
419
+
420
+
421
+ def test_parameter_validation():
422
+ x = [0, 1, 0.5]
423
+ y = np.zeros((2, 3))
424
+ assert_raises(ValueError, solve_bvp, exp_fun, exp_bc, x, y)
425
+
426
+ x = np.linspace(0, 1, 5)
427
+ y = np.zeros((2, 4))
428
+ assert_raises(ValueError, solve_bvp, exp_fun, exp_bc, x, y)
429
+
430
+ def fun(x, y, p):
431
+ return exp_fun(x, y)
432
+ def bc(ya, yb, p):
433
+ return exp_bc(ya, yb)
434
+
435
+ y = np.zeros((2, x.shape[0]))
436
+ assert_raises(ValueError, solve_bvp, fun, bc, x, y, p=[1])
437
+
438
+ def wrong_shape_fun(x, y):
439
+ return np.zeros(3)
440
+
441
+ assert_raises(ValueError, solve_bvp, wrong_shape_fun, bc, x, y)
442
+
443
+ S = np.array([[0, 0]])
444
+ assert_raises(ValueError, solve_bvp, exp_fun, exp_bc, x, y, S=S)
445
+
446
+
447
+ def test_no_params():
448
+ x = np.linspace(0, 1, 5)
449
+ x_test = np.linspace(0, 1, 100)
450
+ y = np.zeros((2, x.shape[0]))
451
+ for fun_jac in [None, exp_fun_jac]:
452
+ for bc_jac in [None, exp_bc_jac]:
453
+ sol = solve_bvp(exp_fun, exp_bc, x, y, fun_jac=fun_jac,
454
+ bc_jac=bc_jac)
455
+
456
+ assert_equal(sol.status, 0)
457
+ assert_(sol.success)
458
+
459
+ assert_equal(sol.x.size, 5)
460
+
461
+ sol_test = sol.sol(x_test)
462
+
463
+ assert_allclose(sol_test[0], exp_sol(x_test), atol=1e-5)
464
+
465
+ f_test = exp_fun(x_test, sol_test)
466
+ r = sol.sol(x_test, 1) - f_test
467
+ rel_res = r / (1 + np.abs(f_test))
468
+ norm_res = np.sum(rel_res**2, axis=0)**0.5
469
+ assert_(np.all(norm_res < 1e-3))
470
+
471
+ assert_(np.all(sol.rms_residuals < 1e-3))
472
+ assert_allclose(sol.sol(sol.x), sol.y, rtol=1e-10, atol=1e-10)
473
+ assert_allclose(sol.sol(sol.x, 1), sol.yp, rtol=1e-10, atol=1e-10)
474
+
475
+
476
+ def test_with_params():
477
+ x = np.linspace(0, np.pi, 5)
478
+ x_test = np.linspace(0, np.pi, 100)
479
+ y = np.ones((2, x.shape[0]))
480
+
481
+ for fun_jac in [None, sl_fun_jac]:
482
+ for bc_jac in [None, sl_bc_jac]:
483
+ sol = solve_bvp(sl_fun, sl_bc, x, y, p=[0.5], fun_jac=fun_jac,
484
+ bc_jac=bc_jac)
485
+
486
+ assert_equal(sol.status, 0)
487
+ assert_(sol.success)
488
+
489
+ assert_(sol.x.size < 10)
490
+
491
+ assert_allclose(sol.p, [1], rtol=1e-4)
492
+
493
+ sol_test = sol.sol(x_test)
494
+
495
+ assert_allclose(sol_test[0], sl_sol(x_test, [1]),
496
+ rtol=1e-4, atol=1e-4)
497
+
498
+ f_test = sl_fun(x_test, sol_test, [1])
499
+ r = sol.sol(x_test, 1) - f_test
500
+ rel_res = r / (1 + np.abs(f_test))
501
+ norm_res = np.sum(rel_res ** 2, axis=0) ** 0.5
502
+ assert_(np.all(norm_res < 1e-3))
503
+
504
+ assert_(np.all(sol.rms_residuals < 1e-3))
505
+ assert_allclose(sol.sol(sol.x), sol.y, rtol=1e-10, atol=1e-10)
506
+ assert_allclose(sol.sol(sol.x, 1), sol.yp, rtol=1e-10, atol=1e-10)
507
+
508
+
509
+ def test_singular_term():
510
+ x = np.linspace(0, 1, 10)
511
+ x_test = np.linspace(0.05, 1, 100)
512
+ y = np.empty((2, 10))
513
+ y[0] = (3/4)**0.5
514
+ y[1] = 1e-4
515
+ S = np.array([[0, 0], [0, -2]])
516
+
517
+ for fun_jac in [None, emden_fun_jac]:
518
+ for bc_jac in [None, emden_bc_jac]:
519
+ sol = solve_bvp(emden_fun, emden_bc, x, y, S=S, fun_jac=fun_jac,
520
+ bc_jac=bc_jac)
521
+
522
+ assert_equal(sol.status, 0)
523
+ assert_(sol.success)
524
+
525
+ assert_equal(sol.x.size, 10)
526
+
527
+ sol_test = sol.sol(x_test)
528
+ assert_allclose(sol_test[0], emden_sol(x_test), atol=1e-5)
529
+
530
+ f_test = emden_fun(x_test, sol_test) + S.dot(sol_test) / x_test
531
+ r = sol.sol(x_test, 1) - f_test
532
+ rel_res = r / (1 + np.abs(f_test))
533
+ norm_res = np.sum(rel_res ** 2, axis=0) ** 0.5
534
+
535
+ assert_(np.all(norm_res < 1e-3))
536
+ assert_allclose(sol.sol(sol.x), sol.y, rtol=1e-10, atol=1e-10)
537
+ assert_allclose(sol.sol(sol.x, 1), sol.yp, rtol=1e-10, atol=1e-10)
538
+
539
+
540
+ def test_complex():
541
+ # The test is essentially the same as test_no_params, but boundary
542
+ # conditions are turned into complex.
543
+ x = np.linspace(0, 1, 5)
544
+ x_test = np.linspace(0, 1, 100)
545
+ y = np.zeros((2, x.shape[0]), dtype=complex)
546
+ for fun_jac in [None, exp_fun_jac]:
547
+ for bc_jac in [None, exp_bc_jac]:
548
+ sol = solve_bvp(exp_fun, exp_bc_complex, x, y, fun_jac=fun_jac,
549
+ bc_jac=bc_jac)
550
+
551
+ assert_equal(sol.status, 0)
552
+ assert_(sol.success)
553
+
554
+ sol_test = sol.sol(x_test)
555
+
556
+ assert_allclose(sol_test[0].real, exp_sol(x_test), atol=1e-5)
557
+ assert_allclose(sol_test[0].imag, exp_sol(x_test), atol=1e-5)
558
+
559
+ f_test = exp_fun(x_test, sol_test)
560
+ r = sol.sol(x_test, 1) - f_test
561
+ rel_res = r / (1 + np.abs(f_test))
562
+ norm_res = np.sum(np.real(rel_res * np.conj(rel_res)),
563
+ axis=0) ** 0.5
564
+ assert_(np.all(norm_res < 1e-3))
565
+
566
+ assert_(np.all(sol.rms_residuals < 1e-3))
567
+ assert_allclose(sol.sol(sol.x), sol.y, rtol=1e-10, atol=1e-10)
568
+ assert_allclose(sol.sol(sol.x, 1), sol.yp, rtol=1e-10, atol=1e-10)
569
+
570
+
571
+ def test_failures():
572
+ x = np.linspace(0, 1, 2)
573
+ y = np.zeros((2, x.size))
574
+ res = solve_bvp(exp_fun, exp_bc, x, y, tol=1e-5, max_nodes=5)
575
+ assert_equal(res.status, 1)
576
+ assert_(not res.success)
577
+
578
+ x = np.linspace(0, 1, 5)
579
+ y = np.zeros((2, x.size))
580
+ res = solve_bvp(undefined_fun, undefined_bc, x, y)
581
+ assert_equal(res.status, 2)
582
+ assert_(not res.success)
583
+
584
+
585
+ def test_big_problem():
586
+ n = 30
587
+ x = np.linspace(0, 1, 5)
588
+ y = np.zeros((2 * n, x.size))
589
+ sol = solve_bvp(big_fun, big_bc, x, y)
590
+
591
+ assert_equal(sol.status, 0)
592
+ assert_(sol.success)
593
+
594
+ sol_test = sol.sol(x)
595
+
596
+ assert_allclose(sol_test[0], big_sol(x, n))
597
+
598
+ f_test = big_fun(x, sol_test)
599
+ r = sol.sol(x, 1) - f_test
600
+ rel_res = r / (1 + np.abs(f_test))
601
+ norm_res = np.sum(np.real(rel_res * np.conj(rel_res)), axis=0) ** 0.5
602
+ assert_(np.all(norm_res < 1e-3))
603
+
604
+ assert_(np.all(sol.rms_residuals < 1e-3))
605
+ assert_allclose(sol.sol(sol.x), sol.y, rtol=1e-10, atol=1e-10)
606
+ assert_allclose(sol.sol(sol.x, 1), sol.yp, rtol=1e-10, atol=1e-10)
607
+
608
+
609
+ def test_big_problem_with_parameters():
610
+ n = 30
611
+ x = np.linspace(0, np.pi, 5)
612
+ x_test = np.linspace(0, np.pi, 100)
613
+ y = np.ones((2 * n, x.size))
614
+
615
+ for fun_jac in [None, big_fun_with_parameters_jac]:
616
+ for bc_jac in [None, big_bc_with_parameters_jac]:
617
+ sol = solve_bvp(big_fun_with_parameters, big_bc_with_parameters, x,
618
+ y, p=[0.5, 0.5], fun_jac=fun_jac, bc_jac=bc_jac)
619
+
620
+ assert_equal(sol.status, 0)
621
+ assert_(sol.success)
622
+
623
+ assert_allclose(sol.p, [1, 1], rtol=1e-4)
624
+
625
+ sol_test = sol.sol(x_test)
626
+
627
+ for isol in range(0, n, 4):
628
+ assert_allclose(sol_test[isol],
629
+ big_sol_with_parameters(x_test, [1, 1])[0],
630
+ rtol=1e-4, atol=1e-4)
631
+ assert_allclose(sol_test[isol + 2],
632
+ big_sol_with_parameters(x_test, [1, 1])[1],
633
+ rtol=1e-4, atol=1e-4)
634
+
635
+ f_test = big_fun_with_parameters(x_test, sol_test, [1, 1])
636
+ r = sol.sol(x_test, 1) - f_test
637
+ rel_res = r / (1 + np.abs(f_test))
638
+ norm_res = np.sum(rel_res ** 2, axis=0) ** 0.5
639
+ assert_(np.all(norm_res < 1e-3))
640
+
641
+ assert_(np.all(sol.rms_residuals < 1e-3))
642
+ assert_allclose(sol.sol(sol.x), sol.y, rtol=1e-10, atol=1e-10)
643
+ assert_allclose(sol.sol(sol.x, 1), sol.yp, rtol=1e-10, atol=1e-10)
644
+
645
+
646
+ def test_shock_layer():
647
+ x = np.linspace(-1, 1, 5)
648
+ x_test = np.linspace(-1, 1, 100)
649
+ y = np.zeros((2, x.size))
650
+ sol = solve_bvp(shock_fun, shock_bc, x, y)
651
+
652
+ assert_equal(sol.status, 0)
653
+ assert_(sol.success)
654
+
655
+ assert_(sol.x.size < 110)
656
+
657
+ sol_test = sol.sol(x_test)
658
+ assert_allclose(sol_test[0], shock_sol(x_test), rtol=1e-5, atol=1e-5)
659
+
660
+ f_test = shock_fun(x_test, sol_test)
661
+ r = sol.sol(x_test, 1) - f_test
662
+ rel_res = r / (1 + np.abs(f_test))
663
+ norm_res = np.sum(rel_res ** 2, axis=0) ** 0.5
664
+
665
+ assert_(np.all(norm_res < 1e-3))
666
+ assert_allclose(sol.sol(sol.x), sol.y, rtol=1e-10, atol=1e-10)
667
+ assert_allclose(sol.sol(sol.x, 1), sol.yp, rtol=1e-10, atol=1e-10)
668
+
669
+
670
+ def test_nonlin_bc():
671
+ x = np.linspace(0, 0.1, 5)
672
+ x_test = x
673
+ y = np.zeros([2, x.size])
674
+ sol = solve_bvp(nonlin_bc_fun, nonlin_bc_bc, x, y)
675
+
676
+ assert_equal(sol.status, 0)
677
+ assert_(sol.success)
678
+
679
+ assert_(sol.x.size < 8)
680
+
681
+ sol_test = sol.sol(x_test)
682
+ assert_allclose(sol_test[0], nonlin_bc_sol(x_test), rtol=1e-5, atol=1e-5)
683
+
684
+ f_test = nonlin_bc_fun(x_test, sol_test)
685
+ r = sol.sol(x_test, 1) - f_test
686
+ rel_res = r / (1 + np.abs(f_test))
687
+ norm_res = np.sum(rel_res ** 2, axis=0) ** 0.5
688
+
689
+ assert_(np.all(norm_res < 1e-3))
690
+ assert_allclose(sol.sol(sol.x), sol.y, rtol=1e-10, atol=1e-10)
691
+ assert_allclose(sol.sol(sol.x, 1), sol.yp, rtol=1e-10, atol=1e-10)
692
+
693
+
694
+ @pytest.mark.thread_unsafe
695
+ def test_verbose():
696
+ # Smoke test that checks the printing does something and does not crash
697
+ x = np.linspace(0, 1, 5)
698
+ y = np.zeros((2, x.shape[0]))
699
+ for verbose in [0, 1, 2]:
700
+ old_stdout = sys.stdout
701
+ sys.stdout = StringIO()
702
+ try:
703
+ sol = solve_bvp(exp_fun, exp_bc, x, y, verbose=verbose)
704
+ text = sys.stdout.getvalue()
705
+ finally:
706
+ sys.stdout = old_stdout
707
+
708
+ assert_(sol.success)
709
+ if verbose == 0:
710
+ assert_(not text, text)
711
+ if verbose >= 1:
712
+ assert_("Solved in" in text, text)
713
+ if verbose >= 2:
714
+ assert_("Max residual" in text, text)