scipy 1.16.2__cp313-cp313t-win_arm64.whl

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Files changed (1530) hide show
  1. scipy/__config__.py +161 -0
  2. scipy/__init__.py +150 -0
  3. scipy/_cyutility.cp313t-win_arm64.lib +0 -0
  4. scipy/_cyutility.cp313t-win_arm64.pyd +0 -0
  5. scipy/_distributor_init.py +18 -0
  6. scipy/_lib/__init__.py +14 -0
  7. scipy/_lib/_array_api.py +931 -0
  8. scipy/_lib/_array_api_compat_vendor.py +9 -0
  9. scipy/_lib/_array_api_no_0d.py +103 -0
  10. scipy/_lib/_bunch.py +229 -0
  11. scipy/_lib/_ccallback.py +251 -0
  12. scipy/_lib/_ccallback_c.cp313t-win_arm64.lib +0 -0
  13. scipy/_lib/_ccallback_c.cp313t-win_arm64.pyd +0 -0
  14. scipy/_lib/_disjoint_set.py +254 -0
  15. scipy/_lib/_docscrape.py +761 -0
  16. scipy/_lib/_elementwise_iterative_method.py +346 -0
  17. scipy/_lib/_fpumode.cp313t-win_arm64.lib +0 -0
  18. scipy/_lib/_fpumode.cp313t-win_arm64.pyd +0 -0
  19. scipy/_lib/_gcutils.py +105 -0
  20. scipy/_lib/_pep440.py +487 -0
  21. scipy/_lib/_sparse.py +41 -0
  22. scipy/_lib/_test_ccallback.cp313t-win_arm64.lib +0 -0
  23. scipy/_lib/_test_ccallback.cp313t-win_arm64.pyd +0 -0
  24. scipy/_lib/_test_deprecation_call.cp313t-win_arm64.lib +0 -0
  25. scipy/_lib/_test_deprecation_call.cp313t-win_arm64.pyd +0 -0
  26. scipy/_lib/_test_deprecation_def.cp313t-win_arm64.lib +0 -0
  27. scipy/_lib/_test_deprecation_def.cp313t-win_arm64.pyd +0 -0
  28. scipy/_lib/_testutils.py +373 -0
  29. scipy/_lib/_threadsafety.py +58 -0
  30. scipy/_lib/_tmpdirs.py +86 -0
  31. scipy/_lib/_uarray/LICENSE +29 -0
  32. scipy/_lib/_uarray/__init__.py +116 -0
  33. scipy/_lib/_uarray/_backend.py +707 -0
  34. scipy/_lib/_uarray/_uarray.cp313t-win_arm64.lib +0 -0
  35. scipy/_lib/_uarray/_uarray.cp313t-win_arm64.pyd +0 -0
  36. scipy/_lib/_util.py +1283 -0
  37. scipy/_lib/array_api_compat/__init__.py +22 -0
  38. scipy/_lib/array_api_compat/_internal.py +59 -0
  39. scipy/_lib/array_api_compat/common/__init__.py +1 -0
  40. scipy/_lib/array_api_compat/common/_aliases.py +727 -0
  41. scipy/_lib/array_api_compat/common/_fft.py +213 -0
  42. scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
  43. scipy/_lib/array_api_compat/common/_linalg.py +232 -0
  44. scipy/_lib/array_api_compat/common/_typing.py +192 -0
  45. scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
  46. scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
  47. scipy/_lib/array_api_compat/cupy/_info.py +336 -0
  48. scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
  49. scipy/_lib/array_api_compat/cupy/fft.py +36 -0
  50. scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
  51. scipy/_lib/array_api_compat/dask/__init__.py +0 -0
  52. scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
  53. scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
  54. scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
  55. scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
  56. scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
  57. scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
  58. scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
  59. scipy/_lib/array_api_compat/numpy/_info.py +366 -0
  60. scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
  61. scipy/_lib/array_api_compat/numpy/fft.py +35 -0
  62. scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
  63. scipy/_lib/array_api_compat/torch/__init__.py +22 -0
  64. scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
  65. scipy/_lib/array_api_compat/torch/_info.py +369 -0
  66. scipy/_lib/array_api_compat/torch/_typing.py +3 -0
  67. scipy/_lib/array_api_compat/torch/fft.py +85 -0
  68. scipy/_lib/array_api_compat/torch/linalg.py +121 -0
  69. scipy/_lib/array_api_extra/__init__.py +38 -0
  70. scipy/_lib/array_api_extra/_delegation.py +171 -0
  71. scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
  72. scipy/_lib/array_api_extra/_lib/_at.py +463 -0
  73. scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
  74. scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
  75. scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
  76. scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
  77. scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
  78. scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
  79. scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
  80. scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
  81. scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
  82. scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
  83. scipy/_lib/array_api_extra/testing.py +359 -0
  84. scipy/_lib/cobyqa/__init__.py +20 -0
  85. scipy/_lib/cobyqa/framework.py +1240 -0
  86. scipy/_lib/cobyqa/main.py +1506 -0
  87. scipy/_lib/cobyqa/models.py +1529 -0
  88. scipy/_lib/cobyqa/problem.py +1296 -0
  89. scipy/_lib/cobyqa/settings.py +132 -0
  90. scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
  91. scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
  92. scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
  93. scipy/_lib/cobyqa/utils/__init__.py +18 -0
  94. scipy/_lib/cobyqa/utils/exceptions.py +22 -0
  95. scipy/_lib/cobyqa/utils/math.py +77 -0
  96. scipy/_lib/cobyqa/utils/versions.py +67 -0
  97. scipy/_lib/decorator.py +399 -0
  98. scipy/_lib/deprecation.py +274 -0
  99. scipy/_lib/doccer.py +366 -0
  100. scipy/_lib/messagestream.cp313t-win_arm64.lib +0 -0
  101. scipy/_lib/messagestream.cp313t-win_arm64.pyd +0 -0
  102. scipy/_lib/pyprima/__init__.py +212 -0
  103. scipy/_lib/pyprima/cobyla/__init__.py +0 -0
  104. scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
  105. scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
  106. scipy/_lib/pyprima/cobyla/geometry.py +226 -0
  107. scipy/_lib/pyprima/cobyla/initialize.py +215 -0
  108. scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
  109. scipy/_lib/pyprima/cobyla/update.py +289 -0
  110. scipy/_lib/pyprima/common/__init__.py +0 -0
  111. scipy/_lib/pyprima/common/_bounds.py +34 -0
  112. scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
  113. scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
  114. scipy/_lib/pyprima/common/_project.py +173 -0
  115. scipy/_lib/pyprima/common/checkbreak.py +93 -0
  116. scipy/_lib/pyprima/common/consts.py +47 -0
  117. scipy/_lib/pyprima/common/evaluate.py +99 -0
  118. scipy/_lib/pyprima/common/history.py +38 -0
  119. scipy/_lib/pyprima/common/infos.py +30 -0
  120. scipy/_lib/pyprima/common/linalg.py +435 -0
  121. scipy/_lib/pyprima/common/message.py +290 -0
  122. scipy/_lib/pyprima/common/powalg.py +131 -0
  123. scipy/_lib/pyprima/common/preproc.py +277 -0
  124. scipy/_lib/pyprima/common/present.py +5 -0
  125. scipy/_lib/pyprima/common/ratio.py +54 -0
  126. scipy/_lib/pyprima/common/redrho.py +47 -0
  127. scipy/_lib/pyprima/common/selectx.py +296 -0
  128. scipy/_lib/tests/__init__.py +0 -0
  129. scipy/_lib/tests/test__gcutils.py +110 -0
  130. scipy/_lib/tests/test__pep440.py +67 -0
  131. scipy/_lib/tests/test__testutils.py +32 -0
  132. scipy/_lib/tests/test__threadsafety.py +51 -0
  133. scipy/_lib/tests/test__util.py +641 -0
  134. scipy/_lib/tests/test_array_api.py +322 -0
  135. scipy/_lib/tests/test_bunch.py +169 -0
  136. scipy/_lib/tests/test_ccallback.py +196 -0
  137. scipy/_lib/tests/test_config.py +45 -0
  138. scipy/_lib/tests/test_deprecation.py +10 -0
  139. scipy/_lib/tests/test_doccer.py +143 -0
  140. scipy/_lib/tests/test_import_cycles.py +18 -0
  141. scipy/_lib/tests/test_public_api.py +482 -0
  142. scipy/_lib/tests/test_scipy_version.py +28 -0
  143. scipy/_lib/tests/test_tmpdirs.py +48 -0
  144. scipy/_lib/tests/test_warnings.py +137 -0
  145. scipy/_lib/uarray.py +31 -0
  146. scipy/cluster/__init__.py +31 -0
  147. scipy/cluster/_hierarchy.cp313t-win_arm64.lib +0 -0
  148. scipy/cluster/_hierarchy.cp313t-win_arm64.pyd +0 -0
  149. scipy/cluster/_optimal_leaf_ordering.cp313t-win_arm64.lib +0 -0
  150. scipy/cluster/_optimal_leaf_ordering.cp313t-win_arm64.pyd +0 -0
  151. scipy/cluster/_vq.cp313t-win_arm64.lib +0 -0
  152. scipy/cluster/_vq.cp313t-win_arm64.pyd +0 -0
  153. scipy/cluster/hierarchy.py +4348 -0
  154. scipy/cluster/tests/__init__.py +0 -0
  155. scipy/cluster/tests/hierarchy_test_data.py +145 -0
  156. scipy/cluster/tests/test_disjoint_set.py +202 -0
  157. scipy/cluster/tests/test_hierarchy.py +1238 -0
  158. scipy/cluster/tests/test_vq.py +434 -0
  159. scipy/cluster/vq.py +832 -0
  160. scipy/conftest.py +683 -0
  161. scipy/constants/__init__.py +358 -0
  162. scipy/constants/_codata.py +2266 -0
  163. scipy/constants/_constants.py +369 -0
  164. scipy/constants/codata.py +21 -0
  165. scipy/constants/constants.py +53 -0
  166. scipy/constants/tests/__init__.py +0 -0
  167. scipy/constants/tests/test_codata.py +78 -0
  168. scipy/constants/tests/test_constants.py +83 -0
  169. scipy/datasets/__init__.py +90 -0
  170. scipy/datasets/_download_all.py +71 -0
  171. scipy/datasets/_fetchers.py +225 -0
  172. scipy/datasets/_registry.py +26 -0
  173. scipy/datasets/_utils.py +81 -0
  174. scipy/datasets/tests/__init__.py +0 -0
  175. scipy/datasets/tests/test_data.py +128 -0
  176. scipy/differentiate/__init__.py +27 -0
  177. scipy/differentiate/_differentiate.py +1129 -0
  178. scipy/differentiate/tests/__init__.py +0 -0
  179. scipy/differentiate/tests/test_differentiate.py +694 -0
  180. scipy/fft/__init__.py +114 -0
  181. scipy/fft/_backend.py +196 -0
  182. scipy/fft/_basic.py +1650 -0
  183. scipy/fft/_basic_backend.py +197 -0
  184. scipy/fft/_debug_backends.py +22 -0
  185. scipy/fft/_fftlog.py +223 -0
  186. scipy/fft/_fftlog_backend.py +200 -0
  187. scipy/fft/_helper.py +348 -0
  188. scipy/fft/_pocketfft/LICENSE.md +25 -0
  189. scipy/fft/_pocketfft/__init__.py +9 -0
  190. scipy/fft/_pocketfft/basic.py +251 -0
  191. scipy/fft/_pocketfft/helper.py +249 -0
  192. scipy/fft/_pocketfft/pypocketfft.cp313t-win_arm64.lib +0 -0
  193. scipy/fft/_pocketfft/pypocketfft.cp313t-win_arm64.pyd +0 -0
  194. scipy/fft/_pocketfft/realtransforms.py +109 -0
  195. scipy/fft/_pocketfft/tests/__init__.py +0 -0
  196. scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
  197. scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
  198. scipy/fft/_realtransforms.py +706 -0
  199. scipy/fft/_realtransforms_backend.py +63 -0
  200. scipy/fft/tests/__init__.py +0 -0
  201. scipy/fft/tests/mock_backend.py +96 -0
  202. scipy/fft/tests/test_backend.py +98 -0
  203. scipy/fft/tests/test_basic.py +504 -0
  204. scipy/fft/tests/test_fftlog.py +215 -0
  205. scipy/fft/tests/test_helper.py +558 -0
  206. scipy/fft/tests/test_multithreading.py +84 -0
  207. scipy/fft/tests/test_real_transforms.py +247 -0
  208. scipy/fftpack/__init__.py +103 -0
  209. scipy/fftpack/_basic.py +428 -0
  210. scipy/fftpack/_helper.py +115 -0
  211. scipy/fftpack/_pseudo_diffs.py +554 -0
  212. scipy/fftpack/_realtransforms.py +598 -0
  213. scipy/fftpack/basic.py +20 -0
  214. scipy/fftpack/convolve.cp313t-win_arm64.lib +0 -0
  215. scipy/fftpack/convolve.cp313t-win_arm64.pyd +0 -0
  216. scipy/fftpack/helper.py +19 -0
  217. scipy/fftpack/pseudo_diffs.py +22 -0
  218. scipy/fftpack/realtransforms.py +19 -0
  219. scipy/fftpack/tests/__init__.py +0 -0
  220. scipy/fftpack/tests/fftw_double_ref.npz +0 -0
  221. scipy/fftpack/tests/fftw_longdouble_ref.npz +0 -0
  222. scipy/fftpack/tests/fftw_single_ref.npz +0 -0
  223. scipy/fftpack/tests/test.npz +0 -0
  224. scipy/fftpack/tests/test_basic.py +877 -0
  225. scipy/fftpack/tests/test_helper.py +54 -0
  226. scipy/fftpack/tests/test_import.py +33 -0
  227. scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
  228. scipy/fftpack/tests/test_real_transforms.py +836 -0
  229. scipy/integrate/__init__.py +122 -0
  230. scipy/integrate/_bvp.py +1160 -0
  231. scipy/integrate/_cubature.py +729 -0
  232. scipy/integrate/_dop.cp313t-win_arm64.lib +0 -0
  233. scipy/integrate/_dop.cp313t-win_arm64.pyd +0 -0
  234. scipy/integrate/_ivp/__init__.py +8 -0
  235. scipy/integrate/_ivp/base.py +290 -0
  236. scipy/integrate/_ivp/bdf.py +478 -0
  237. scipy/integrate/_ivp/common.py +451 -0
  238. scipy/integrate/_ivp/dop853_coefficients.py +193 -0
  239. scipy/integrate/_ivp/ivp.py +755 -0
  240. scipy/integrate/_ivp/lsoda.py +224 -0
  241. scipy/integrate/_ivp/radau.py +572 -0
  242. scipy/integrate/_ivp/rk.py +601 -0
  243. scipy/integrate/_ivp/tests/__init__.py +0 -0
  244. scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
  245. scipy/integrate/_ivp/tests/test_rk.py +37 -0
  246. scipy/integrate/_lebedev.py +5450 -0
  247. scipy/integrate/_lsoda.cp313t-win_arm64.lib +0 -0
  248. scipy/integrate/_lsoda.cp313t-win_arm64.pyd +0 -0
  249. scipy/integrate/_ode.py +1395 -0
  250. scipy/integrate/_odepack.cp313t-win_arm64.lib +0 -0
  251. scipy/integrate/_odepack.cp313t-win_arm64.pyd +0 -0
  252. scipy/integrate/_odepack_py.py +273 -0
  253. scipy/integrate/_quad_vec.py +674 -0
  254. scipy/integrate/_quadpack.cp313t-win_arm64.lib +0 -0
  255. scipy/integrate/_quadpack.cp313t-win_arm64.pyd +0 -0
  256. scipy/integrate/_quadpack_py.py +1283 -0
  257. scipy/integrate/_quadrature.py +1336 -0
  258. scipy/integrate/_rules/__init__.py +12 -0
  259. scipy/integrate/_rules/_base.py +518 -0
  260. scipy/integrate/_rules/_gauss_kronrod.py +202 -0
  261. scipy/integrate/_rules/_gauss_legendre.py +62 -0
  262. scipy/integrate/_rules/_genz_malik.py +210 -0
  263. scipy/integrate/_tanhsinh.py +1385 -0
  264. scipy/integrate/_test_multivariate.cp313t-win_arm64.lib +0 -0
  265. scipy/integrate/_test_multivariate.cp313t-win_arm64.pyd +0 -0
  266. scipy/integrate/_test_odeint_banded.cp313t-win_arm64.lib +0 -0
  267. scipy/integrate/_test_odeint_banded.cp313t-win_arm64.pyd +0 -0
  268. scipy/integrate/_vode.cp313t-win_arm64.lib +0 -0
  269. scipy/integrate/_vode.cp313t-win_arm64.pyd +0 -0
  270. scipy/integrate/dop.py +15 -0
  271. scipy/integrate/lsoda.py +15 -0
  272. scipy/integrate/odepack.py +17 -0
  273. scipy/integrate/quadpack.py +23 -0
  274. scipy/integrate/tests/__init__.py +0 -0
  275. scipy/integrate/tests/test__quad_vec.py +211 -0
  276. scipy/integrate/tests/test_banded_ode_solvers.py +305 -0
  277. scipy/integrate/tests/test_bvp.py +714 -0
  278. scipy/integrate/tests/test_cubature.py +1375 -0
  279. scipy/integrate/tests/test_integrate.py +840 -0
  280. scipy/integrate/tests/test_odeint_jac.py +74 -0
  281. scipy/integrate/tests/test_quadpack.py +680 -0
  282. scipy/integrate/tests/test_quadrature.py +730 -0
  283. scipy/integrate/tests/test_tanhsinh.py +1171 -0
  284. scipy/integrate/vode.py +15 -0
  285. scipy/interpolate/__init__.py +228 -0
  286. scipy/interpolate/_bary_rational.py +715 -0
  287. scipy/interpolate/_bsplines.py +2469 -0
  288. scipy/interpolate/_cubic.py +973 -0
  289. scipy/interpolate/_dfitpack.cp313t-win_arm64.lib +0 -0
  290. scipy/interpolate/_dfitpack.cp313t-win_arm64.pyd +0 -0
  291. scipy/interpolate/_dierckx.cp313t-win_arm64.lib +0 -0
  292. scipy/interpolate/_dierckx.cp313t-win_arm64.pyd +0 -0
  293. scipy/interpolate/_fitpack.cp313t-win_arm64.lib +0 -0
  294. scipy/interpolate/_fitpack.cp313t-win_arm64.pyd +0 -0
  295. scipy/interpolate/_fitpack2.py +2397 -0
  296. scipy/interpolate/_fitpack_impl.py +811 -0
  297. scipy/interpolate/_fitpack_py.py +898 -0
  298. scipy/interpolate/_fitpack_repro.py +996 -0
  299. scipy/interpolate/_interpnd.cp313t-win_arm64.lib +0 -0
  300. scipy/interpolate/_interpnd.cp313t-win_arm64.pyd +0 -0
  301. scipy/interpolate/_interpolate.py +2266 -0
  302. scipy/interpolate/_ndbspline.py +415 -0
  303. scipy/interpolate/_ndgriddata.py +329 -0
  304. scipy/interpolate/_pade.py +67 -0
  305. scipy/interpolate/_polyint.py +1025 -0
  306. scipy/interpolate/_ppoly.cp313t-win_arm64.lib +0 -0
  307. scipy/interpolate/_ppoly.cp313t-win_arm64.pyd +0 -0
  308. scipy/interpolate/_rbf.py +290 -0
  309. scipy/interpolate/_rbfinterp.py +550 -0
  310. scipy/interpolate/_rbfinterp_pythran.cp313t-win_arm64.lib +0 -0
  311. scipy/interpolate/_rbfinterp_pythran.cp313t-win_arm64.pyd +0 -0
  312. scipy/interpolate/_rgi.py +764 -0
  313. scipy/interpolate/_rgi_cython.cp313t-win_arm64.lib +0 -0
  314. scipy/interpolate/_rgi_cython.cp313t-win_arm64.pyd +0 -0
  315. scipy/interpolate/dfitpack.py +24 -0
  316. scipy/interpolate/fitpack.py +31 -0
  317. scipy/interpolate/fitpack2.py +29 -0
  318. scipy/interpolate/interpnd.py +24 -0
  319. scipy/interpolate/interpolate.py +30 -0
  320. scipy/interpolate/ndgriddata.py +23 -0
  321. scipy/interpolate/polyint.py +24 -0
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  1511. scipy/stats/tests/test_odds_ratio.py +148 -0
  1512. scipy/stats/tests/test_qmc.py +1492 -0
  1513. scipy/stats/tests/test_quantile.py +199 -0
  1514. scipy/stats/tests/test_rank.py +345 -0
  1515. scipy/stats/tests/test_relative_risk.py +95 -0
  1516. scipy/stats/tests/test_resampling.py +2000 -0
  1517. scipy/stats/tests/test_sampling.py +1450 -0
  1518. scipy/stats/tests/test_sensitivity_analysis.py +310 -0
  1519. scipy/stats/tests/test_stats.py +9707 -0
  1520. scipy/stats/tests/test_survival.py +466 -0
  1521. scipy/stats/tests/test_tukeylambda_stats.py +85 -0
  1522. scipy/stats/tests/test_variation.py +216 -0
  1523. scipy/version.py +12 -0
  1524. scipy-1.16.2.dist-info/DELVEWHEEL +2 -0
  1525. scipy-1.16.2.dist-info/LICENSE.txt +912 -0
  1526. scipy-1.16.2.dist-info/METADATA +1061 -0
  1527. scipy-1.16.2.dist-info/RECORD +1530 -0
  1528. scipy-1.16.2.dist-info/WHEEL +4 -0
  1529. scipy.libs/msvcp140-5f1c5dd31916990d94181e07bc3afb32.dll +0 -0
  1530. scipy.libs/scipy_openblas-f3ac85b1f412f7e86514c923dc4058d1.dll +0 -0
@@ -0,0 +1,973 @@
1
+ """Interpolation algorithms using piecewise cubic polynomials."""
2
+
3
+ from typing import Literal
4
+
5
+ import numpy as np
6
+
7
+ from scipy.linalg import solve, solve_banded
8
+
9
+ from . import PPoly
10
+ from ._polyint import _isscalar
11
+
12
+ __all__ = ["CubicHermiteSpline", "PchipInterpolator", "pchip_interpolate",
13
+ "Akima1DInterpolator", "CubicSpline"]
14
+
15
+
16
+ def prepare_input(x, y, axis, dydx=None):
17
+ """Prepare input for cubic spline interpolators.
18
+
19
+ All data are converted to numpy arrays and checked for correctness.
20
+ Axes equal to `axis` of arrays `y` and `dydx` are moved to be the 0th
21
+ axis. The value of `axis` is converted to lie in
22
+ [0, number of dimensions of `y`).
23
+ """
24
+
25
+ x, y = map(np.asarray, (x, y))
26
+ if np.issubdtype(x.dtype, np.complexfloating):
27
+ raise ValueError("`x` must contain real values.")
28
+ x = x.astype(float)
29
+
30
+ if np.issubdtype(y.dtype, np.complexfloating):
31
+ dtype = complex
32
+ else:
33
+ dtype = float
34
+
35
+ if dydx is not None:
36
+ dydx = np.asarray(dydx)
37
+ if y.shape != dydx.shape:
38
+ raise ValueError("The shapes of `y` and `dydx` must be identical.")
39
+ if np.issubdtype(dydx.dtype, np.complexfloating):
40
+ dtype = complex
41
+ dydx = dydx.astype(dtype, copy=False)
42
+
43
+ y = y.astype(dtype, copy=False)
44
+ axis = axis % y.ndim
45
+ if x.ndim != 1:
46
+ raise ValueError("`x` must be 1-dimensional.")
47
+ if x.shape[0] < 2:
48
+ raise ValueError("`x` must contain at least 2 elements.")
49
+ if x.shape[0] != y.shape[axis]:
50
+ raise ValueError(f"The length of `y` along `axis`={axis} doesn't "
51
+ "match the length of `x`")
52
+
53
+ if not np.all(np.isfinite(x)):
54
+ raise ValueError("`x` must contain only finite values.")
55
+ if not np.all(np.isfinite(y)):
56
+ raise ValueError("`y` must contain only finite values.")
57
+
58
+ if dydx is not None and not np.all(np.isfinite(dydx)):
59
+ raise ValueError("`dydx` must contain only finite values.")
60
+
61
+ dx = np.diff(x)
62
+ if np.any(dx <= 0):
63
+ raise ValueError("`x` must be strictly increasing sequence.")
64
+
65
+ y = np.moveaxis(y, axis, 0)
66
+ if dydx is not None:
67
+ dydx = np.moveaxis(dydx, axis, 0)
68
+
69
+ return x, dx, y, axis, dydx
70
+
71
+
72
+ class CubicHermiteSpline(PPoly):
73
+ """Piecewise cubic interpolator to fit values and first derivatives (C1 smooth).
74
+
75
+ The result is represented as a `PPoly` instance.
76
+
77
+ Parameters
78
+ ----------
79
+ x : array_like, shape (n,)
80
+ 1-D array containing values of the independent variable.
81
+ Values must be real, finite and in strictly increasing order.
82
+ y : array_like
83
+ Array containing values of the dependent variable. It can have
84
+ arbitrary number of dimensions, but the length along ``axis``
85
+ (see below) must match the length of ``x``. Values must be finite.
86
+ dydx : array_like
87
+ Array containing derivatives of the dependent variable. It can have
88
+ arbitrary number of dimensions, but the length along ``axis``
89
+ (see below) must match the length of ``x``. Values must be finite.
90
+ axis : int, optional
91
+ Axis along which `y` is assumed to be varying. Meaning that for
92
+ ``x[i]`` the corresponding values are ``np.take(y, i, axis=axis)``.
93
+ Default is 0.
94
+ extrapolate : {bool, 'periodic', None}, optional
95
+ If bool, determines whether to extrapolate to out-of-bounds points
96
+ based on first and last intervals, or to return NaNs. If 'periodic',
97
+ periodic extrapolation is used. If None (default), it is set to True.
98
+
99
+ Attributes
100
+ ----------
101
+ x : ndarray, shape (n,)
102
+ Breakpoints. The same ``x`` which was passed to the constructor.
103
+ c : ndarray, shape (4, n-1, ...)
104
+ Coefficients of the polynomials on each segment. The trailing
105
+ dimensions match the dimensions of `y`, excluding ``axis``.
106
+ For example, if `y` is 1-D, then ``c[k, i]`` is a coefficient for
107
+ ``(x-x[i])**(3-k)`` on the segment between ``x[i]`` and ``x[i+1]``.
108
+ axis : int
109
+ Interpolation axis. The same axis which was passed to the
110
+ constructor.
111
+
112
+ Methods
113
+ -------
114
+ __call__
115
+ derivative
116
+ antiderivative
117
+ integrate
118
+ solve
119
+ roots
120
+
121
+ See Also
122
+ --------
123
+ Akima1DInterpolator : Akima 1D interpolator.
124
+ PchipInterpolator : PCHIP 1-D monotonic cubic interpolator.
125
+ CubicSpline : Cubic spline data interpolator.
126
+ PPoly : Piecewise polynomial in terms of coefficients and breakpoints
127
+
128
+ Notes
129
+ -----
130
+ If you want to create a higher-order spline matching higher-order
131
+ derivatives, use `BPoly.from_derivatives`.
132
+
133
+ References
134
+ ----------
135
+ .. [1] `Cubic Hermite spline
136
+ <https://en.wikipedia.org/wiki/Cubic_Hermite_spline>`_
137
+ on Wikipedia.
138
+ """
139
+
140
+ def __init__(self, x, y, dydx, axis=0, extrapolate=None):
141
+ if extrapolate is None:
142
+ extrapolate = True
143
+
144
+ x, dx, y, axis, dydx = prepare_input(x, y, axis, dydx)
145
+
146
+ dxr = dx.reshape([dx.shape[0]] + [1] * (y.ndim - 1))
147
+ slope = np.diff(y, axis=0) / dxr
148
+ t = (dydx[:-1] + dydx[1:] - 2 * slope) / dxr
149
+
150
+ c = np.empty((4, len(x) - 1) + y.shape[1:], dtype=t.dtype)
151
+ c[0] = t / dxr
152
+ c[1] = (slope - dydx[:-1]) / dxr - t
153
+ c[2] = dydx[:-1]
154
+ c[3] = y[:-1]
155
+
156
+ super().__init__(c, x, extrapolate=extrapolate)
157
+ self.axis = axis
158
+
159
+
160
+ class PchipInterpolator(CubicHermiteSpline):
161
+ r"""PCHIP shape-preserving interpolator (C1 smooth).
162
+
163
+ ``x`` and ``y`` are arrays of values used to approximate some function f,
164
+ with ``y = f(x)``. The interpolant uses monotonic cubic splines
165
+ to find the value of new points. (PCHIP stands for Piecewise Cubic
166
+ Hermite Interpolating Polynomial).
167
+
168
+ Parameters
169
+ ----------
170
+ x : ndarray, shape (npoints, )
171
+ A 1-D array of monotonically increasing real values. ``x`` cannot
172
+ include duplicate values (otherwise f is overspecified)
173
+ y : ndarray, shape (..., npoints, ...)
174
+ A N-D array of real values. ``y``'s length along the interpolation
175
+ axis must be equal to the length of ``x``. Use the ``axis``
176
+ parameter to select the interpolation axis.
177
+ axis : int, optional
178
+ Axis in the ``y`` array corresponding to the x-coordinate values. Defaults
179
+ to ``axis=0``.
180
+ extrapolate : bool, optional
181
+ Whether to extrapolate to out-of-bounds points based on first
182
+ and last intervals, or to return NaNs.
183
+
184
+ Methods
185
+ -------
186
+ __call__
187
+ derivative
188
+ antiderivative
189
+ integrate
190
+ solve
191
+ roots
192
+
193
+
194
+ See Also
195
+ --------
196
+ CubicHermiteSpline : Piecewise-cubic interpolator.
197
+ Akima1DInterpolator : Akima 1D interpolator.
198
+ CubicSpline : Cubic spline data interpolator.
199
+ PPoly : Piecewise polynomial in terms of coefficients and breakpoints.
200
+
201
+ Notes
202
+ -----
203
+ The interpolator preserves monotonicity in the interpolation data and does
204
+ not overshoot if the data is not smooth.
205
+
206
+ The first derivatives are guaranteed to be continuous, but the second
207
+ derivatives may jump at :math:`x_k`.
208
+
209
+ Determines the derivatives at the points :math:`x_k`, :math:`f'_k`,
210
+ by using PCHIP algorithm [1]_.
211
+
212
+ Let :math:`h_k = x_{k+1} - x_k`, and :math:`d_k = (y_{k+1} - y_k) / h_k`
213
+ are the slopes at internal points :math:`x_k`.
214
+ If the signs of :math:`d_k` and :math:`d_{k-1}` are different or either of
215
+ them equals zero, then :math:`f'_k = 0`. Otherwise, it is given by the
216
+ weighted harmonic mean
217
+
218
+ .. math::
219
+
220
+ \frac{w_1 + w_2}{f'_k} = \frac{w_1}{d_{k-1}} + \frac{w_2}{d_k}
221
+
222
+ where :math:`w_1 = 2 h_k + h_{k-1}` and :math:`w_2 = h_k + 2 h_{k-1}`.
223
+
224
+ The end slopes are set using a one-sided scheme [2]_.
225
+
226
+
227
+ References
228
+ ----------
229
+ .. [1] F. N. Fritsch and J. Butland,
230
+ A method for constructing local
231
+ monotone piecewise cubic interpolants,
232
+ SIAM J. Sci. Comput., 5(2), 300-304 (1984).
233
+ :doi:`10.1137/0905021`.
234
+ .. [2] see, e.g., C. Moler, Numerical Computing with Matlab, 2004.
235
+ :doi:`10.1137/1.9780898717952`
236
+
237
+ """
238
+
239
+ def __init__(self, x, y, axis=0, extrapolate=None):
240
+ x, _, y, axis, _ = prepare_input(x, y, axis)
241
+ if np.iscomplexobj(y):
242
+ msg = ("`PchipInterpolator` only works with real values for `y`. "
243
+ "If you are trying to use the real components of the passed array, "
244
+ "use `np.real` on the array before passing to `PchipInterpolator`.")
245
+ raise ValueError(msg)
246
+ xp = x.reshape((x.shape[0],) + (1,)*(y.ndim-1))
247
+ dk = self._find_derivatives(xp, y)
248
+ super().__init__(x, y, dk, axis=0, extrapolate=extrapolate)
249
+ self.axis = axis
250
+
251
+ @staticmethod
252
+ def _edge_case(h0, h1, m0, m1):
253
+ # one-sided three-point estimate for the derivative
254
+ d = ((2*h0 + h1)*m0 - h0*m1) / (h0 + h1)
255
+
256
+ # try to preserve shape
257
+ mask = np.sign(d) != np.sign(m0)
258
+ mask2 = (np.sign(m0) != np.sign(m1)) & (np.abs(d) > 3.*np.abs(m0))
259
+ mmm = (~mask) & mask2
260
+
261
+ d[mask] = 0.
262
+ d[mmm] = 3.*m0[mmm]
263
+
264
+ return d
265
+
266
+ @staticmethod
267
+ def _find_derivatives(x, y):
268
+ # Determine the derivatives at the points y_k, d_k, by using
269
+ # PCHIP algorithm is:
270
+ # We choose the derivatives at the point x_k by
271
+ # Let m_k be the slope of the kth segment (between k and k+1)
272
+ # If m_k=0 or m_{k-1}=0 or sgn(m_k) != sgn(m_{k-1}) then d_k == 0
273
+ # else use weighted harmonic mean:
274
+ # w_1 = 2h_k + h_{k-1}, w_2 = h_k + 2h_{k-1}
275
+ # 1/d_k = 1/(w_1 + w_2)*(w_1 / m_k + w_2 / m_{k-1})
276
+ # where h_k is the spacing between x_k and x_{k+1}
277
+ y_shape = y.shape
278
+ if y.ndim == 1:
279
+ # So that _edge_case doesn't end up assigning to scalars
280
+ x = x[:, None]
281
+ y = y[:, None]
282
+
283
+ hk = x[1:] - x[:-1]
284
+ mk = (y[1:] - y[:-1]) / hk
285
+
286
+ if y.shape[0] == 2:
287
+ # edge case: only have two points, use linear interpolation
288
+ dk = np.zeros_like(y)
289
+ dk[0] = mk
290
+ dk[1] = mk
291
+ return dk.reshape(y_shape)
292
+
293
+ smk = np.sign(mk)
294
+ condition = (smk[1:] != smk[:-1]) | (mk[1:] == 0) | (mk[:-1] == 0)
295
+
296
+ w1 = 2*hk[1:] + hk[:-1]
297
+ w2 = hk[1:] + 2*hk[:-1]
298
+
299
+ # values where division by zero occurs will be excluded
300
+ # by 'condition' afterwards
301
+ with np.errstate(divide='ignore', invalid='ignore'):
302
+ whmean = (w1/mk[:-1] + w2/mk[1:]) / (w1 + w2)
303
+
304
+ dk = np.zeros_like(y)
305
+ dk[1:-1][condition] = 0.0
306
+ dk[1:-1][~condition] = 1.0 / whmean[~condition]
307
+
308
+ # special case endpoints, as suggested in
309
+ # Cleve Moler, Numerical Computing with MATLAB, Chap 3.6 (pchiptx.m)
310
+ dk[0] = PchipInterpolator._edge_case(hk[0], hk[1], mk[0], mk[1])
311
+ dk[-1] = PchipInterpolator._edge_case(hk[-1], hk[-2], mk[-1], mk[-2])
312
+
313
+ return dk.reshape(y_shape)
314
+
315
+
316
+ def pchip_interpolate(xi, yi, x, der=0, axis=0):
317
+ """
318
+ Convenience function for pchip interpolation.
319
+
320
+ xi and yi are arrays of values used to approximate some function f,
321
+ with ``yi = f(xi)``. The interpolant uses monotonic cubic splines
322
+ to find the value of new points x and the derivatives there.
323
+
324
+ See `scipy.interpolate.PchipInterpolator` for details.
325
+
326
+ Parameters
327
+ ----------
328
+ xi : array_like
329
+ A sorted list of x-coordinates, of length N.
330
+ yi : array_like
331
+ A 1-D array of real values. `yi`'s length along the interpolation
332
+ axis must be equal to the length of `xi`. If N-D array, use axis
333
+ parameter to select correct axis.
334
+ x : scalar or array_like
335
+ Of length M.
336
+ der : int or list, optional
337
+ Derivatives to extract. The 0th derivative can be included to
338
+ return the function value.
339
+ axis : int, optional
340
+ Axis in the yi array corresponding to the x-coordinate values.
341
+
342
+ Returns
343
+ -------
344
+ y : scalar or array_like
345
+ The result, of length R or length M or M by R.
346
+
347
+ See Also
348
+ --------
349
+ PchipInterpolator : PCHIP 1-D monotonic cubic interpolator.
350
+
351
+ Examples
352
+ --------
353
+ We can interpolate 2D observed data using pchip interpolation:
354
+
355
+ >>> import numpy as np
356
+ >>> import matplotlib.pyplot as plt
357
+ >>> from scipy.interpolate import pchip_interpolate
358
+ >>> x_observed = np.linspace(0.0, 10.0, 11)
359
+ >>> y_observed = np.sin(x_observed)
360
+ >>> x = np.linspace(min(x_observed), max(x_observed), num=100)
361
+ >>> y = pchip_interpolate(x_observed, y_observed, x)
362
+ >>> plt.plot(x_observed, y_observed, "o", label="observation")
363
+ >>> plt.plot(x, y, label="pchip interpolation")
364
+ >>> plt.legend()
365
+ >>> plt.show()
366
+
367
+ """
368
+ P = PchipInterpolator(xi, yi, axis=axis)
369
+
370
+ if der == 0:
371
+ return P(x)
372
+ elif _isscalar(der):
373
+ return P.derivative(der)(x)
374
+ else:
375
+ return [P.derivative(nu)(x) for nu in der]
376
+
377
+
378
+ class Akima1DInterpolator(CubicHermiteSpline):
379
+ r"""Akima "visually pleasing" interpolator (C1 smooth).
380
+
381
+ Fit piecewise cubic polynomials, given vectors x and y. The interpolation
382
+ method by Akima uses a continuously differentiable sub-spline built from
383
+ piecewise cubic polynomials. The resultant curve passes through the given
384
+ data points and will appear smooth and natural.
385
+
386
+ Parameters
387
+ ----------
388
+ x : ndarray, shape (npoints, )
389
+ 1-D array of monotonically increasing real values.
390
+ y : ndarray, shape (..., npoints, ...)
391
+ N-D array of real values. The length of ``y`` along the interpolation axis
392
+ must be equal to the length of ``x``. Use the ``axis`` parameter to
393
+ select the interpolation axis.
394
+ axis : int, optional
395
+ Axis in the ``y`` array corresponding to the x-coordinate values. Defaults
396
+ to ``axis=0``.
397
+ method : {'akima', 'makima'}, optional
398
+ If ``"makima"``, use the modified Akima interpolation [2]_.
399
+ Defaults to ``"akima"``, use the Akima interpolation [1]_.
400
+
401
+ .. versionadded:: 1.13.0
402
+
403
+ extrapolate : {bool, None}, optional
404
+ If bool, determines whether to extrapolate to out-of-bounds points
405
+ based on first and last intervals, or to return NaNs. If None,
406
+ ``extrapolate`` is set to False.
407
+
408
+ Methods
409
+ -------
410
+ __call__
411
+ derivative
412
+ antiderivative
413
+ integrate
414
+ solve
415
+ roots
416
+
417
+ See Also
418
+ --------
419
+ PchipInterpolator : PCHIP 1-D monotonic cubic interpolator.
420
+ CubicSpline : Cubic spline data interpolator.
421
+ PPoly : Piecewise polynomial in terms of coefficients and breakpoints
422
+
423
+ Notes
424
+ -----
425
+ .. versionadded:: 0.14
426
+
427
+ Use only for precise data, as the fitted curve passes through the given
428
+ points exactly. This routine is useful for plotting a pleasingly smooth
429
+ curve through a few given points for purposes of plotting.
430
+
431
+ Let :math:`\delta_i = (y_{i+1} - y_i) / (x_{i+1} - x_i)` be the slopes of
432
+ the interval :math:`\left[x_i, x_{i+1}\right)`. Akima's derivative at
433
+ :math:`x_i` is defined as:
434
+
435
+ .. math::
436
+
437
+ d_i = \frac{w_1}{w_1 + w_2}\delta_{i-1} + \frac{w_2}{w_1 + w_2}\delta_i
438
+
439
+ In the Akima interpolation [1]_ (``method="akima"``), the weights are:
440
+
441
+ .. math::
442
+
443
+ \begin{aligned}
444
+ w_1 &= |\delta_{i+1} - \delta_i| \\
445
+ w_2 &= |\delta_{i-1} - \delta_{i-2}|
446
+ \end{aligned}
447
+
448
+ In the modified Akima interpolation [2]_ (``method="makima"``),
449
+ to eliminate overshoot and avoid edge cases of both numerator and
450
+ denominator being equal to 0, the weights are modified as follows:
451
+
452
+ .. math::
453
+
454
+ \begin{align*}
455
+ w_1 &= |\delta_{i+1} - \delta_i| + |\delta_{i+1} + \delta_i| / 2 \\
456
+ w_2 &= |\delta_{i-1} - \delta_{i-2}| + |\delta_{i-1} + \delta_{i-2}| / 2
457
+ \end{align*}
458
+
459
+ Examples
460
+ --------
461
+ Comparison of ``method="akima"`` and ``method="makima"``:
462
+
463
+ >>> import numpy as np
464
+ >>> from scipy.interpolate import Akima1DInterpolator
465
+ >>> import matplotlib.pyplot as plt
466
+ >>> x = np.linspace(1, 7, 7)
467
+ >>> y = np.array([-1, -1, -1, 0, 1, 1, 1])
468
+ >>> xs = np.linspace(min(x), max(x), num=100)
469
+ >>> y_akima = Akima1DInterpolator(x, y, method="akima")(xs)
470
+ >>> y_makima = Akima1DInterpolator(x, y, method="makima")(xs)
471
+
472
+ >>> fig, ax = plt.subplots()
473
+ >>> ax.plot(x, y, "o", label="data")
474
+ >>> ax.plot(xs, y_akima, label="akima")
475
+ >>> ax.plot(xs, y_makima, label="makima")
476
+ >>> ax.legend()
477
+ >>> fig.show()
478
+
479
+ The overshoot that occurred in ``"akima"`` has been avoided in ``"makima"``.
480
+
481
+ References
482
+ ----------
483
+ .. [1] A new method of interpolation and smooth curve fitting based
484
+ on local procedures. Hiroshi Akima, J. ACM, October 1970, 17(4),
485
+ 589-602. :doi:`10.1145/321607.321609`
486
+ .. [2] Makima Piecewise Cubic Interpolation. Cleve Moler and Cosmin Ionita, 2019.
487
+ https://blogs.mathworks.com/cleve/2019/04/29/makima-piecewise-cubic-interpolation/
488
+
489
+ """
490
+
491
+ def __init__(self, x, y, axis=0, *, method: Literal["akima", "makima"]="akima",
492
+ extrapolate:bool | None = None):
493
+ if method not in {"akima", "makima"}:
494
+ raise NotImplementedError(f"`method`={method} is unsupported.")
495
+ # Original implementation in MATLAB by N. Shamsundar (BSD licensed), see
496
+ # https://www.mathworks.com/matlabcentral/fileexchange/1814-akima-interpolation
497
+ x, dx, y, axis, _ = prepare_input(x, y, axis)
498
+
499
+ if np.iscomplexobj(y):
500
+ msg = ("`Akima1DInterpolator` only works with real values for `y`. "
501
+ "If you are trying to use the real components of the passed array, "
502
+ "use `np.real` on the array before passing to "
503
+ "`Akima1DInterpolator`.")
504
+ raise ValueError(msg)
505
+
506
+ # Akima extrapolation historically False; parent class defaults to True.
507
+ extrapolate = False if extrapolate is None else extrapolate
508
+
509
+ if y.shape[0] == 2:
510
+ # edge case: only have two points, use linear interpolation
511
+ xp = x.reshape((x.shape[0],) + (1,)*(y.ndim-1))
512
+ hk = xp[1:] - xp[:-1]
513
+ mk = (y[1:] - y[:-1]) / hk
514
+ t = np.zeros_like(y)
515
+ t[...] = mk
516
+ else:
517
+ # determine slopes between breakpoints
518
+ m = np.empty((x.size + 3, ) + y.shape[1:])
519
+ dx = dx[(slice(None), ) + (None, ) * (y.ndim - 1)]
520
+ m[2:-2] = np.diff(y, axis=0) / dx
521
+
522
+ # add two additional points on the left ...
523
+ m[1] = 2. * m[2] - m[3]
524
+ m[0] = 2. * m[1] - m[2]
525
+ # ... and on the right
526
+ m[-2] = 2. * m[-3] - m[-4]
527
+ m[-1] = 2. * m[-2] - m[-3]
528
+
529
+ # if m1 == m2 != m3 == m4, the slope at the breakpoint is not
530
+ # defined. This is the fill value:
531
+ t = .5 * (m[3:] + m[:-3])
532
+ # get the denominator of the slope t
533
+ dm = np.abs(np.diff(m, axis=0))
534
+ if method == "makima":
535
+ pm = np.abs(m[1:] + m[:-1])
536
+ f1 = dm[2:] + 0.5 * pm[2:]
537
+ f2 = dm[:-2] + 0.5 * pm[:-2]
538
+ else:
539
+ f1 = dm[2:]
540
+ f2 = dm[:-2]
541
+ f12 = f1 + f2
542
+ # These are the mask of where the slope at breakpoint is defined:
543
+ ind = np.nonzero(f12 > 1e-9 * np.max(f12, initial=-np.inf))
544
+ x_ind, y_ind = ind[0], ind[1:]
545
+ # Set the slope at breakpoint
546
+ t[ind] = (f1[ind] * m[(x_ind + 1,) + y_ind] +
547
+ f2[ind] * m[(x_ind + 2,) + y_ind]) / f12[ind]
548
+
549
+ super().__init__(x, y, t, axis=0, extrapolate=extrapolate)
550
+ self.axis = axis
551
+
552
+ def extend(self, c, x, right=True):
553
+ raise NotImplementedError("Extending a 1-D Akima interpolator is not "
554
+ "yet implemented")
555
+
556
+ # These are inherited from PPoly, but they do not produce an Akima
557
+ # interpolator. Hence stub them out.
558
+ @classmethod
559
+ def from_spline(cls, tck, extrapolate=None):
560
+ raise NotImplementedError("This method does not make sense for "
561
+ "an Akima interpolator.")
562
+
563
+ @classmethod
564
+ def from_bernstein_basis(cls, bp, extrapolate=None):
565
+ raise NotImplementedError("This method does not make sense for "
566
+ "an Akima interpolator.")
567
+
568
+
569
+ class CubicSpline(CubicHermiteSpline):
570
+ """Piecewise cubic interpolator to fit values (C2 smooth).
571
+
572
+ Interpolate data with a piecewise cubic polynomial which is twice
573
+ continuously differentiable [1]_. The result is represented as a `PPoly`
574
+ instance with breakpoints matching the given data.
575
+
576
+ Parameters
577
+ ----------
578
+ x : array_like, shape (n,)
579
+ 1-D array containing values of the independent variable.
580
+ Values must be real, finite and in strictly increasing order.
581
+ y : array_like
582
+ Array containing values of the dependent variable. It can have
583
+ arbitrary number of dimensions, but the length along ``axis``
584
+ (see below) must match the length of ``x``. Values must be finite.
585
+ axis : int, optional
586
+ Axis along which `y` is assumed to be varying. Meaning that for
587
+ ``x[i]`` the corresponding values are ``np.take(y, i, axis=axis)``.
588
+ Default is 0.
589
+ bc_type : string or 2-tuple, optional
590
+ Boundary condition type. Two additional equations, given by the
591
+ boundary conditions, are required to determine all coefficients of
592
+ polynomials on each segment [2]_.
593
+
594
+ If `bc_type` is a string, then the specified condition will be applied
595
+ at both ends of a spline. Available conditions are:
596
+
597
+ * 'not-a-knot' (default): The first and second segment at a curve end
598
+ are the same polynomial. It is a good default when there is no
599
+ information on boundary conditions.
600
+ * 'periodic': The interpolated functions is assumed to be periodic
601
+ of period ``x[-1] - x[0]``. The first and last value of `y` must be
602
+ identical: ``y[0] == y[-1]``. This boundary condition will result in
603
+ ``y'[0] == y'[-1]`` and ``y''[0] == y''[-1]``.
604
+ * 'clamped': The first derivative at curves ends are zero. Assuming
605
+ a 1D `y`, ``bc_type=((1, 0.0), (1, 0.0))`` is the same condition.
606
+ * 'natural': The second derivative at curve ends are zero. Assuming
607
+ a 1D `y`, ``bc_type=((2, 0.0), (2, 0.0))`` is the same condition.
608
+
609
+ If `bc_type` is a 2-tuple, the first and the second value will be
610
+ applied at the curve start and end respectively. The tuple values can
611
+ be one of the previously mentioned strings (except 'periodic') or a
612
+ tuple ``(order, deriv_values)`` allowing to specify arbitrary
613
+ derivatives at curve ends:
614
+
615
+ * `order`: the derivative order, 1 or 2.
616
+ * `deriv_value`: array_like containing derivative values, shape must
617
+ be the same as `y`, excluding ``axis`` dimension. For example, if
618
+ `y` is 1-D, then `deriv_value` must be a scalar. If `y` is 3-D with
619
+ the shape (n0, n1, n2) and axis=2, then `deriv_value` must be 2-D
620
+ and have the shape (n0, n1).
621
+ extrapolate : {bool, 'periodic', None}, optional
622
+ If bool, determines whether to extrapolate to out-of-bounds points
623
+ based on first and last intervals, or to return NaNs. If 'periodic',
624
+ periodic extrapolation is used. If None (default), ``extrapolate`` is
625
+ set to 'periodic' for ``bc_type='periodic'`` and to True otherwise.
626
+
627
+ Attributes
628
+ ----------
629
+ x : ndarray, shape (n,)
630
+ Breakpoints. The same ``x`` which was passed to the constructor.
631
+ c : ndarray, shape (4, n-1, ...)
632
+ Coefficients of the polynomials on each segment. The trailing
633
+ dimensions match the dimensions of `y`, excluding ``axis``.
634
+ For example, if `y` is 1-d, then ``c[k, i]`` is a coefficient for
635
+ ``(x-x[i])**(3-k)`` on the segment between ``x[i]`` and ``x[i+1]``.
636
+ axis : int
637
+ Interpolation axis. The same axis which was passed to the
638
+ constructor.
639
+
640
+ Methods
641
+ -------
642
+ __call__
643
+ derivative
644
+ antiderivative
645
+ integrate
646
+ solve
647
+ roots
648
+
649
+ See Also
650
+ --------
651
+ Akima1DInterpolator : Akima 1D interpolator.
652
+ PchipInterpolator : PCHIP 1-D monotonic cubic interpolator.
653
+ PPoly : Piecewise polynomial in terms of coefficients and breakpoints.
654
+
655
+ Notes
656
+ -----
657
+ Parameters `bc_type` and ``extrapolate`` work independently, i.e. the
658
+ former controls only construction of a spline, and the latter only
659
+ evaluation.
660
+
661
+ When a boundary condition is 'not-a-knot' and n = 2, it is replaced by
662
+ a condition that the first derivative is equal to the linear interpolant
663
+ slope. When both boundary conditions are 'not-a-knot' and n = 3, the
664
+ solution is sought as a parabola passing through given points.
665
+
666
+ When 'not-a-knot' boundary conditions is applied to both ends, the
667
+ resulting spline will be the same as returned by `splrep` (with ``s=0``)
668
+ and `InterpolatedUnivariateSpline`, but these two methods use a
669
+ representation in B-spline basis.
670
+
671
+ .. versionadded:: 0.18.0
672
+
673
+ Examples
674
+ --------
675
+ In this example the cubic spline is used to interpolate a sampled sinusoid.
676
+ You can see that the spline continuity property holds for the first and
677
+ second derivatives and violates only for the third derivative.
678
+
679
+ >>> import numpy as np
680
+ >>> from scipy.interpolate import CubicSpline
681
+ >>> import matplotlib.pyplot as plt
682
+ >>> x = np.arange(10)
683
+ >>> y = np.sin(x)
684
+ >>> cs = CubicSpline(x, y)
685
+ >>> xs = np.arange(-0.5, 9.6, 0.1)
686
+ >>> fig, ax = plt.subplots(figsize=(6.5, 4))
687
+ >>> ax.plot(x, y, 'o', label='data')
688
+ >>> ax.plot(xs, np.sin(xs), label='true')
689
+ >>> ax.plot(xs, cs(xs), label="S")
690
+ >>> ax.plot(xs, cs(xs, 1), label="S'")
691
+ >>> ax.plot(xs, cs(xs, 2), label="S''")
692
+ >>> ax.plot(xs, cs(xs, 3), label="S'''")
693
+ >>> ax.set_xlim(-0.5, 9.5)
694
+ >>> ax.legend(loc='lower left', ncol=2)
695
+ >>> plt.show()
696
+
697
+ In the second example, the unit circle is interpolated with a spline. A
698
+ periodic boundary condition is used. You can see that the first derivative
699
+ values, ds/dx=0, ds/dy=1 at the periodic point (1, 0) are correctly
700
+ computed. Note that a circle cannot be exactly represented by a cubic
701
+ spline. To increase precision, more breakpoints would be required.
702
+
703
+ >>> theta = 2 * np.pi * np.linspace(0, 1, 5)
704
+ >>> y = np.c_[np.cos(theta), np.sin(theta)]
705
+ >>> cs = CubicSpline(theta, y, bc_type='periodic')
706
+ >>> print("ds/dx={:.1f} ds/dy={:.1f}".format(cs(0, 1)[0], cs(0, 1)[1]))
707
+ ds/dx=0.0 ds/dy=1.0
708
+ >>> xs = 2 * np.pi * np.linspace(0, 1, 100)
709
+ >>> fig, ax = plt.subplots(figsize=(6.5, 4))
710
+ >>> ax.plot(y[:, 0], y[:, 1], 'o', label='data')
711
+ >>> ax.plot(np.cos(xs), np.sin(xs), label='true')
712
+ >>> ax.plot(cs(xs)[:, 0], cs(xs)[:, 1], label='spline')
713
+ >>> ax.axes.set_aspect('equal')
714
+ >>> ax.legend(loc='center')
715
+ >>> plt.show()
716
+
717
+ The third example is the interpolation of a polynomial y = x**3 on the
718
+ interval 0 <= x<= 1. A cubic spline can represent this function exactly.
719
+ To achieve that we need to specify values and first derivatives at
720
+ endpoints of the interval. Note that y' = 3 * x**2 and thus y'(0) = 0 and
721
+ y'(1) = 3.
722
+
723
+ >>> cs = CubicSpline([0, 1], [0, 1], bc_type=((1, 0), (1, 3)))
724
+ >>> x = np.linspace(0, 1)
725
+ >>> np.allclose(x**3, cs(x))
726
+ True
727
+
728
+ References
729
+ ----------
730
+ .. [1] `Cubic Spline Interpolation
731
+ <https://en.wikiversity.org/wiki/Cubic_Spline_Interpolation>`_
732
+ on Wikiversity.
733
+ .. [2] Carl de Boor, "A Practical Guide to Splines", Springer-Verlag, 1978.
734
+ """
735
+
736
+ def __init__(self, x, y, axis=0, bc_type='not-a-knot', extrapolate=None):
737
+ x, dx, y, axis, _ = prepare_input(x, y, axis)
738
+ n = len(x)
739
+
740
+ bc, y = self._validate_bc(bc_type, y, y.shape[1:], axis)
741
+
742
+ if extrapolate is None:
743
+ if bc[0] == 'periodic':
744
+ extrapolate = 'periodic'
745
+ else:
746
+ extrapolate = True
747
+
748
+ if y.size == 0:
749
+ # bail out early for zero-sized arrays
750
+ s = np.zeros_like(y)
751
+ else:
752
+ dxr = dx.reshape([dx.shape[0]] + [1] * (y.ndim - 1))
753
+ slope = np.diff(y, axis=0) / dxr
754
+
755
+ # If bc is 'not-a-knot' this change is just a convention.
756
+ # If bc is 'periodic' then we already checked that y[0] == y[-1],
757
+ # and the spline is just a constant, we handle this case in the
758
+ # same way by setting the first derivatives to slope, which is 0.
759
+ if n == 2:
760
+ if bc[0] in ['not-a-knot', 'periodic']:
761
+ bc[0] = (1, slope[0])
762
+ if bc[1] in ['not-a-knot', 'periodic']:
763
+ bc[1] = (1, slope[0])
764
+
765
+ # This is a special case, when both conditions are 'not-a-knot'
766
+ # and n == 3. In this case 'not-a-knot' can't be handled regularly
767
+ # as the both conditions are identical. We handle this case by
768
+ # constructing a parabola passing through given points.
769
+ if n == 3 and bc[0] == 'not-a-knot' and bc[1] == 'not-a-knot':
770
+ A = np.zeros((3, 3)) # This is a standard matrix.
771
+ b = np.empty((3,) + y.shape[1:], dtype=y.dtype)
772
+
773
+ A[0, 0] = 1
774
+ A[0, 1] = 1
775
+ A[1, 0] = dx[1]
776
+ A[1, 1] = 2 * (dx[0] + dx[1])
777
+ A[1, 2] = dx[0]
778
+ A[2, 1] = 1
779
+ A[2, 2] = 1
780
+
781
+ b[0] = 2 * slope[0]
782
+ b[1] = 3 * (dxr[0] * slope[1] + dxr[1] * slope[0])
783
+ b[2] = 2 * slope[1]
784
+
785
+ m = b.shape[0]
786
+ s = solve(A, b.reshape(m, -1), overwrite_a=True, overwrite_b=True,
787
+ check_finite=False).reshape(b.shape)
788
+ elif n == 3 and bc[0] == 'periodic':
789
+ # In case when number of points is 3 we compute the derivatives
790
+ # manually
791
+ t = (slope / dxr).sum(0) / (1. / dxr).sum(0)
792
+ s = np.broadcast_to(t, (n,) + y.shape[1:])
793
+ else:
794
+ # Find derivative values at each x[i] by solving a tridiagonal
795
+ # system.
796
+ A = np.zeros((3, n)) # This is a banded matrix representation.
797
+ b = np.empty((n,) + y.shape[1:], dtype=y.dtype)
798
+
799
+ # Filling the system for i=1..n-2
800
+ # (x[i-1] - x[i]) * s[i-1] +\
801
+ # 2 * ((x[i] - x[i-1]) + (x[i+1] - x[i])) * s[i] +\
802
+ # (x[i] - x[i-1]) * s[i+1] =\
803
+ # 3 * ((x[i+1] - x[i])*(y[i] - y[i-1])/(x[i] - x[i-1]) +\
804
+ # (x[i] - x[i-1])*(y[i+1] - y[i])/(x[i+1] - x[i]))
805
+
806
+ A[1, 1:-1] = 2 * (dx[:-1] + dx[1:]) # The diagonal
807
+ A[0, 2:] = dx[:-1] # The upper diagonal
808
+ A[-1, :-2] = dx[1:] # The lower diagonal
809
+
810
+ b[1:-1] = 3 * (dxr[1:] * slope[:-1] + dxr[:-1] * slope[1:])
811
+
812
+ bc_start, bc_end = bc
813
+
814
+ if bc_start == 'periodic':
815
+ # Due to the periodicity, and because y[-1] = y[0], the
816
+ # linear system has (n-1) unknowns/equations instead of n:
817
+ A = A[:, 0:-1]
818
+ A[1, 0] = 2 * (dx[-1] + dx[0])
819
+ A[0, 1] = dx[-1]
820
+
821
+ b = b[:-1]
822
+
823
+ # Also, due to the periodicity, the system is not tri-diagonal.
824
+ # We need to compute a "condensed" matrix of shape (n-2, n-2).
825
+ # See https://web.archive.org/web/20151220180652/http://www.cfm.brown.edu/people/gk/chap6/node14.html
826
+ # for more explanations.
827
+ # The condensed matrix is obtained by removing the last column
828
+ # and last row of the (n-1, n-1) system matrix. The removed
829
+ # values are saved in scalar variables with the (n-1, n-1)
830
+ # system matrix indices forming their names:
831
+ a_m1_0 = dx[-2] # lower left corner value: A[-1, 0]
832
+ a_m1_m2 = dx[-1]
833
+ a_m1_m1 = 2 * (dx[-1] + dx[-2])
834
+ a_m2_m1 = dx[-3]
835
+ a_0_m1 = dx[0]
836
+
837
+ b[0] = 3 * (dxr[0] * slope[-1] + dxr[-1] * slope[0])
838
+ b[-1] = 3 * (dxr[-1] * slope[-2] + dxr[-2] * slope[-1])
839
+
840
+ Ac = A[:, :-1]
841
+ b1 = b[:-1]
842
+ b2 = np.zeros_like(b1)
843
+ b2[0] = -a_0_m1
844
+ b2[-1] = -a_m2_m1
845
+
846
+ # s1 and s2 are the solutions of (n-2, n-2) system
847
+ m = b1.shape[0]
848
+ s1 = solve_banded((1, 1), Ac, b1.reshape(m, -1), overwrite_ab=False,
849
+ overwrite_b=False, check_finite=False)
850
+ s1 = s1.reshape(b1.shape)
851
+
852
+ m = b2.shape[0]
853
+ s2 = solve_banded((1, 1), Ac, b2.reshape(m, -1), overwrite_ab=False,
854
+ overwrite_b=False, check_finite=False)
855
+ s2 = s2.reshape(b2.shape)
856
+
857
+ # computing the s[n-2] solution:
858
+ s_m1 = ((b[-1] - a_m1_0 * s1[0] - a_m1_m2 * s1[-1]) /
859
+ (a_m1_m1 + a_m1_0 * s2[0] + a_m1_m2 * s2[-1]))
860
+
861
+ # s is the solution of the (n, n) system:
862
+ s = np.empty((n,) + y.shape[1:], dtype=y.dtype)
863
+ s[:-2] = s1 + s_m1 * s2
864
+ s[-2] = s_m1
865
+ s[-1] = s[0]
866
+ else:
867
+ if bc_start == 'not-a-knot':
868
+ A[1, 0] = dx[1]
869
+ A[0, 1] = x[2] - x[0]
870
+ d = x[2] - x[0]
871
+ b[0] = ((dxr[0] + 2*d) * dxr[1] * slope[0] +
872
+ dxr[0]**2 * slope[1]) / d
873
+ elif bc_start[0] == 1:
874
+ A[1, 0] = 1
875
+ A[0, 1] = 0
876
+ b[0] = bc_start[1]
877
+ elif bc_start[0] == 2:
878
+ A[1, 0] = 2 * dx[0]
879
+ A[0, 1] = dx[0]
880
+ b[0] = -0.5 * bc_start[1] * dx[0]**2 + 3 * (y[1] - y[0])
881
+
882
+ if bc_end == 'not-a-knot':
883
+ A[1, -1] = dx[-2]
884
+ A[-1, -2] = x[-1] - x[-3]
885
+ d = x[-1] - x[-3]
886
+ b[-1] = ((dxr[-1]**2*slope[-2] +
887
+ (2*d + dxr[-1])*dxr[-2]*slope[-1]) / d)
888
+ elif bc_end[0] == 1:
889
+ A[1, -1] = 1
890
+ A[-1, -2] = 0
891
+ b[-1] = bc_end[1]
892
+ elif bc_end[0] == 2:
893
+ A[1, -1] = 2 * dx[-1]
894
+ A[-1, -2] = dx[-1]
895
+ b[-1] = 0.5 * bc_end[1] * dx[-1]**2 + 3 * (y[-1] - y[-2])
896
+
897
+ m = b.shape[0]
898
+ s = solve_banded((1, 1), A, b.reshape(m, -1), overwrite_ab=True,
899
+ overwrite_b=True, check_finite=False)
900
+ s = s.reshape(b.shape)
901
+
902
+ super().__init__(x, y, s, axis=0, extrapolate=extrapolate)
903
+ self.axis = axis
904
+
905
+ @staticmethod
906
+ def _validate_bc(bc_type, y, expected_deriv_shape, axis):
907
+ """Validate and prepare boundary conditions.
908
+
909
+ Returns
910
+ -------
911
+ validated_bc : 2-tuple
912
+ Boundary conditions for a curve start and end.
913
+ y : ndarray
914
+ y casted to complex dtype if one of the boundary conditions has
915
+ complex dtype.
916
+ """
917
+ if isinstance(bc_type, str):
918
+ if bc_type == 'periodic':
919
+ if not np.allclose(y[0], y[-1], rtol=1e-15, atol=1e-15):
920
+ raise ValueError(
921
+ f"The first and last `y` point along axis {axis} must "
922
+ "be identical (within machine precision) when "
923
+ "bc_type='periodic'.")
924
+
925
+ bc_type = (bc_type, bc_type)
926
+
927
+ else:
928
+ if len(bc_type) != 2:
929
+ raise ValueError("`bc_type` must contain 2 elements to "
930
+ "specify start and end conditions.")
931
+
932
+ if 'periodic' in bc_type:
933
+ raise ValueError("'periodic' `bc_type` is defined for both "
934
+ "curve ends and cannot be used with other "
935
+ "boundary conditions.")
936
+
937
+ validated_bc = []
938
+ for bc in bc_type:
939
+ if isinstance(bc, str):
940
+ if bc == 'clamped':
941
+ validated_bc.append((1, np.zeros(expected_deriv_shape)))
942
+ elif bc == 'natural':
943
+ validated_bc.append((2, np.zeros(expected_deriv_shape)))
944
+ elif bc in ['not-a-knot', 'periodic']:
945
+ validated_bc.append(bc)
946
+ else:
947
+ raise ValueError(f"bc_type={bc} is not allowed.")
948
+ else:
949
+ try:
950
+ deriv_order, deriv_value = bc
951
+ except Exception as e:
952
+ raise ValueError(
953
+ "A specified derivative value must be "
954
+ "given in the form (order, value)."
955
+ ) from e
956
+
957
+ if deriv_order not in [1, 2]:
958
+ raise ValueError("The specified derivative order must "
959
+ "be 1 or 2.")
960
+
961
+ deriv_value = np.asarray(deriv_value)
962
+ if deriv_value.shape != expected_deriv_shape:
963
+ raise ValueError(
964
+ f"`deriv_value` shape {deriv_value.shape} is not "
965
+ f"the expected one {expected_deriv_shape}."
966
+ )
967
+
968
+ if np.issubdtype(deriv_value.dtype, np.complexfloating):
969
+ y = y.astype(complex, copy=False)
970
+
971
+ validated_bc.append((deriv_order, deriv_value))
972
+
973
+ return validated_bc, y