scipy 1.16.2__cp313-cp313t-win_arm64.whl

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Files changed (1530) hide show
  1. scipy/__config__.py +161 -0
  2. scipy/__init__.py +150 -0
  3. scipy/_cyutility.cp313t-win_arm64.lib +0 -0
  4. scipy/_cyutility.cp313t-win_arm64.pyd +0 -0
  5. scipy/_distributor_init.py +18 -0
  6. scipy/_lib/__init__.py +14 -0
  7. scipy/_lib/_array_api.py +931 -0
  8. scipy/_lib/_array_api_compat_vendor.py +9 -0
  9. scipy/_lib/_array_api_no_0d.py +103 -0
  10. scipy/_lib/_bunch.py +229 -0
  11. scipy/_lib/_ccallback.py +251 -0
  12. scipy/_lib/_ccallback_c.cp313t-win_arm64.lib +0 -0
  13. scipy/_lib/_ccallback_c.cp313t-win_arm64.pyd +0 -0
  14. scipy/_lib/_disjoint_set.py +254 -0
  15. scipy/_lib/_docscrape.py +761 -0
  16. scipy/_lib/_elementwise_iterative_method.py +346 -0
  17. scipy/_lib/_fpumode.cp313t-win_arm64.lib +0 -0
  18. scipy/_lib/_fpumode.cp313t-win_arm64.pyd +0 -0
  19. scipy/_lib/_gcutils.py +105 -0
  20. scipy/_lib/_pep440.py +487 -0
  21. scipy/_lib/_sparse.py +41 -0
  22. scipy/_lib/_test_ccallback.cp313t-win_arm64.lib +0 -0
  23. scipy/_lib/_test_ccallback.cp313t-win_arm64.pyd +0 -0
  24. scipy/_lib/_test_deprecation_call.cp313t-win_arm64.lib +0 -0
  25. scipy/_lib/_test_deprecation_call.cp313t-win_arm64.pyd +0 -0
  26. scipy/_lib/_test_deprecation_def.cp313t-win_arm64.lib +0 -0
  27. scipy/_lib/_test_deprecation_def.cp313t-win_arm64.pyd +0 -0
  28. scipy/_lib/_testutils.py +373 -0
  29. scipy/_lib/_threadsafety.py +58 -0
  30. scipy/_lib/_tmpdirs.py +86 -0
  31. scipy/_lib/_uarray/LICENSE +29 -0
  32. scipy/_lib/_uarray/__init__.py +116 -0
  33. scipy/_lib/_uarray/_backend.py +707 -0
  34. scipy/_lib/_uarray/_uarray.cp313t-win_arm64.lib +0 -0
  35. scipy/_lib/_uarray/_uarray.cp313t-win_arm64.pyd +0 -0
  36. scipy/_lib/_util.py +1283 -0
  37. scipy/_lib/array_api_compat/__init__.py +22 -0
  38. scipy/_lib/array_api_compat/_internal.py +59 -0
  39. scipy/_lib/array_api_compat/common/__init__.py +1 -0
  40. scipy/_lib/array_api_compat/common/_aliases.py +727 -0
  41. scipy/_lib/array_api_compat/common/_fft.py +213 -0
  42. scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
  43. scipy/_lib/array_api_compat/common/_linalg.py +232 -0
  44. scipy/_lib/array_api_compat/common/_typing.py +192 -0
  45. scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
  46. scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
  47. scipy/_lib/array_api_compat/cupy/_info.py +336 -0
  48. scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
  49. scipy/_lib/array_api_compat/cupy/fft.py +36 -0
  50. scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
  51. scipy/_lib/array_api_compat/dask/__init__.py +0 -0
  52. scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
  53. scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
  54. scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
  55. scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
  56. scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
  57. scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
  58. scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
  59. scipy/_lib/array_api_compat/numpy/_info.py +366 -0
  60. scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
  61. scipy/_lib/array_api_compat/numpy/fft.py +35 -0
  62. scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
  63. scipy/_lib/array_api_compat/torch/__init__.py +22 -0
  64. scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
  65. scipy/_lib/array_api_compat/torch/_info.py +369 -0
  66. scipy/_lib/array_api_compat/torch/_typing.py +3 -0
  67. scipy/_lib/array_api_compat/torch/fft.py +85 -0
  68. scipy/_lib/array_api_compat/torch/linalg.py +121 -0
  69. scipy/_lib/array_api_extra/__init__.py +38 -0
  70. scipy/_lib/array_api_extra/_delegation.py +171 -0
  71. scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
  72. scipy/_lib/array_api_extra/_lib/_at.py +463 -0
  73. scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
  74. scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
  75. scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
  76. scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
  77. scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
  78. scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
  79. scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
  80. scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
  81. scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
  82. scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
  83. scipy/_lib/array_api_extra/testing.py +359 -0
  84. scipy/_lib/cobyqa/__init__.py +20 -0
  85. scipy/_lib/cobyqa/framework.py +1240 -0
  86. scipy/_lib/cobyqa/main.py +1506 -0
  87. scipy/_lib/cobyqa/models.py +1529 -0
  88. scipy/_lib/cobyqa/problem.py +1296 -0
  89. scipy/_lib/cobyqa/settings.py +132 -0
  90. scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
  91. scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
  92. scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
  93. scipy/_lib/cobyqa/utils/__init__.py +18 -0
  94. scipy/_lib/cobyqa/utils/exceptions.py +22 -0
  95. scipy/_lib/cobyqa/utils/math.py +77 -0
  96. scipy/_lib/cobyqa/utils/versions.py +67 -0
  97. scipy/_lib/decorator.py +399 -0
  98. scipy/_lib/deprecation.py +274 -0
  99. scipy/_lib/doccer.py +366 -0
  100. scipy/_lib/messagestream.cp313t-win_arm64.lib +0 -0
  101. scipy/_lib/messagestream.cp313t-win_arm64.pyd +0 -0
  102. scipy/_lib/pyprima/__init__.py +212 -0
  103. scipy/_lib/pyprima/cobyla/__init__.py +0 -0
  104. scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
  105. scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
  106. scipy/_lib/pyprima/cobyla/geometry.py +226 -0
  107. scipy/_lib/pyprima/cobyla/initialize.py +215 -0
  108. scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
  109. scipy/_lib/pyprima/cobyla/update.py +289 -0
  110. scipy/_lib/pyprima/common/__init__.py +0 -0
  111. scipy/_lib/pyprima/common/_bounds.py +34 -0
  112. scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
  113. scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
  114. scipy/_lib/pyprima/common/_project.py +173 -0
  115. scipy/_lib/pyprima/common/checkbreak.py +93 -0
  116. scipy/_lib/pyprima/common/consts.py +47 -0
  117. scipy/_lib/pyprima/common/evaluate.py +99 -0
  118. scipy/_lib/pyprima/common/history.py +38 -0
  119. scipy/_lib/pyprima/common/infos.py +30 -0
  120. scipy/_lib/pyprima/common/linalg.py +435 -0
  121. scipy/_lib/pyprima/common/message.py +290 -0
  122. scipy/_lib/pyprima/common/powalg.py +131 -0
  123. scipy/_lib/pyprima/common/preproc.py +277 -0
  124. scipy/_lib/pyprima/common/present.py +5 -0
  125. scipy/_lib/pyprima/common/ratio.py +54 -0
  126. scipy/_lib/pyprima/common/redrho.py +47 -0
  127. scipy/_lib/pyprima/common/selectx.py +296 -0
  128. scipy/_lib/tests/__init__.py +0 -0
  129. scipy/_lib/tests/test__gcutils.py +110 -0
  130. scipy/_lib/tests/test__pep440.py +67 -0
  131. scipy/_lib/tests/test__testutils.py +32 -0
  132. scipy/_lib/tests/test__threadsafety.py +51 -0
  133. scipy/_lib/tests/test__util.py +641 -0
  134. scipy/_lib/tests/test_array_api.py +322 -0
  135. scipy/_lib/tests/test_bunch.py +169 -0
  136. scipy/_lib/tests/test_ccallback.py +196 -0
  137. scipy/_lib/tests/test_config.py +45 -0
  138. scipy/_lib/tests/test_deprecation.py +10 -0
  139. scipy/_lib/tests/test_doccer.py +143 -0
  140. scipy/_lib/tests/test_import_cycles.py +18 -0
  141. scipy/_lib/tests/test_public_api.py +482 -0
  142. scipy/_lib/tests/test_scipy_version.py +28 -0
  143. scipy/_lib/tests/test_tmpdirs.py +48 -0
  144. scipy/_lib/tests/test_warnings.py +137 -0
  145. scipy/_lib/uarray.py +31 -0
  146. scipy/cluster/__init__.py +31 -0
  147. scipy/cluster/_hierarchy.cp313t-win_arm64.lib +0 -0
  148. scipy/cluster/_hierarchy.cp313t-win_arm64.pyd +0 -0
  149. scipy/cluster/_optimal_leaf_ordering.cp313t-win_arm64.lib +0 -0
  150. scipy/cluster/_optimal_leaf_ordering.cp313t-win_arm64.pyd +0 -0
  151. scipy/cluster/_vq.cp313t-win_arm64.lib +0 -0
  152. scipy/cluster/_vq.cp313t-win_arm64.pyd +0 -0
  153. scipy/cluster/hierarchy.py +4348 -0
  154. scipy/cluster/tests/__init__.py +0 -0
  155. scipy/cluster/tests/hierarchy_test_data.py +145 -0
  156. scipy/cluster/tests/test_disjoint_set.py +202 -0
  157. scipy/cluster/tests/test_hierarchy.py +1238 -0
  158. scipy/cluster/tests/test_vq.py +434 -0
  159. scipy/cluster/vq.py +832 -0
  160. scipy/conftest.py +683 -0
  161. scipy/constants/__init__.py +358 -0
  162. scipy/constants/_codata.py +2266 -0
  163. scipy/constants/_constants.py +369 -0
  164. scipy/constants/codata.py +21 -0
  165. scipy/constants/constants.py +53 -0
  166. scipy/constants/tests/__init__.py +0 -0
  167. scipy/constants/tests/test_codata.py +78 -0
  168. scipy/constants/tests/test_constants.py +83 -0
  169. scipy/datasets/__init__.py +90 -0
  170. scipy/datasets/_download_all.py +71 -0
  171. scipy/datasets/_fetchers.py +225 -0
  172. scipy/datasets/_registry.py +26 -0
  173. scipy/datasets/_utils.py +81 -0
  174. scipy/datasets/tests/__init__.py +0 -0
  175. scipy/datasets/tests/test_data.py +128 -0
  176. scipy/differentiate/__init__.py +27 -0
  177. scipy/differentiate/_differentiate.py +1129 -0
  178. scipy/differentiate/tests/__init__.py +0 -0
  179. scipy/differentiate/tests/test_differentiate.py +694 -0
  180. scipy/fft/__init__.py +114 -0
  181. scipy/fft/_backend.py +196 -0
  182. scipy/fft/_basic.py +1650 -0
  183. scipy/fft/_basic_backend.py +197 -0
  184. scipy/fft/_debug_backends.py +22 -0
  185. scipy/fft/_fftlog.py +223 -0
  186. scipy/fft/_fftlog_backend.py +200 -0
  187. scipy/fft/_helper.py +348 -0
  188. scipy/fft/_pocketfft/LICENSE.md +25 -0
  189. scipy/fft/_pocketfft/__init__.py +9 -0
  190. scipy/fft/_pocketfft/basic.py +251 -0
  191. scipy/fft/_pocketfft/helper.py +249 -0
  192. scipy/fft/_pocketfft/pypocketfft.cp313t-win_arm64.lib +0 -0
  193. scipy/fft/_pocketfft/pypocketfft.cp313t-win_arm64.pyd +0 -0
  194. scipy/fft/_pocketfft/realtransforms.py +109 -0
  195. scipy/fft/_pocketfft/tests/__init__.py +0 -0
  196. scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
  197. scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
  198. scipy/fft/_realtransforms.py +706 -0
  199. scipy/fft/_realtransforms_backend.py +63 -0
  200. scipy/fft/tests/__init__.py +0 -0
  201. scipy/fft/tests/mock_backend.py +96 -0
  202. scipy/fft/tests/test_backend.py +98 -0
  203. scipy/fft/tests/test_basic.py +504 -0
  204. scipy/fft/tests/test_fftlog.py +215 -0
  205. scipy/fft/tests/test_helper.py +558 -0
  206. scipy/fft/tests/test_multithreading.py +84 -0
  207. scipy/fft/tests/test_real_transforms.py +247 -0
  208. scipy/fftpack/__init__.py +103 -0
  209. scipy/fftpack/_basic.py +428 -0
  210. scipy/fftpack/_helper.py +115 -0
  211. scipy/fftpack/_pseudo_diffs.py +554 -0
  212. scipy/fftpack/_realtransforms.py +598 -0
  213. scipy/fftpack/basic.py +20 -0
  214. scipy/fftpack/convolve.cp313t-win_arm64.lib +0 -0
  215. scipy/fftpack/convolve.cp313t-win_arm64.pyd +0 -0
  216. scipy/fftpack/helper.py +19 -0
  217. scipy/fftpack/pseudo_diffs.py +22 -0
  218. scipy/fftpack/realtransforms.py +19 -0
  219. scipy/fftpack/tests/__init__.py +0 -0
  220. scipy/fftpack/tests/fftw_double_ref.npz +0 -0
  221. scipy/fftpack/tests/fftw_longdouble_ref.npz +0 -0
  222. scipy/fftpack/tests/fftw_single_ref.npz +0 -0
  223. scipy/fftpack/tests/test.npz +0 -0
  224. scipy/fftpack/tests/test_basic.py +877 -0
  225. scipy/fftpack/tests/test_helper.py +54 -0
  226. scipy/fftpack/tests/test_import.py +33 -0
  227. scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
  228. scipy/fftpack/tests/test_real_transforms.py +836 -0
  229. scipy/integrate/__init__.py +122 -0
  230. scipy/integrate/_bvp.py +1160 -0
  231. scipy/integrate/_cubature.py +729 -0
  232. scipy/integrate/_dop.cp313t-win_arm64.lib +0 -0
  233. scipy/integrate/_dop.cp313t-win_arm64.pyd +0 -0
  234. scipy/integrate/_ivp/__init__.py +8 -0
  235. scipy/integrate/_ivp/base.py +290 -0
  236. scipy/integrate/_ivp/bdf.py +478 -0
  237. scipy/integrate/_ivp/common.py +451 -0
  238. scipy/integrate/_ivp/dop853_coefficients.py +193 -0
  239. scipy/integrate/_ivp/ivp.py +755 -0
  240. scipy/integrate/_ivp/lsoda.py +224 -0
  241. scipy/integrate/_ivp/radau.py +572 -0
  242. scipy/integrate/_ivp/rk.py +601 -0
  243. scipy/integrate/_ivp/tests/__init__.py +0 -0
  244. scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
  245. scipy/integrate/_ivp/tests/test_rk.py +37 -0
  246. scipy/integrate/_lebedev.py +5450 -0
  247. scipy/integrate/_lsoda.cp313t-win_arm64.lib +0 -0
  248. scipy/integrate/_lsoda.cp313t-win_arm64.pyd +0 -0
  249. scipy/integrate/_ode.py +1395 -0
  250. scipy/integrate/_odepack.cp313t-win_arm64.lib +0 -0
  251. scipy/integrate/_odepack.cp313t-win_arm64.pyd +0 -0
  252. scipy/integrate/_odepack_py.py +273 -0
  253. scipy/integrate/_quad_vec.py +674 -0
  254. scipy/integrate/_quadpack.cp313t-win_arm64.lib +0 -0
  255. scipy/integrate/_quadpack.cp313t-win_arm64.pyd +0 -0
  256. scipy/integrate/_quadpack_py.py +1283 -0
  257. scipy/integrate/_quadrature.py +1336 -0
  258. scipy/integrate/_rules/__init__.py +12 -0
  259. scipy/integrate/_rules/_base.py +518 -0
  260. scipy/integrate/_rules/_gauss_kronrod.py +202 -0
  261. scipy/integrate/_rules/_gauss_legendre.py +62 -0
  262. scipy/integrate/_rules/_genz_malik.py +210 -0
  263. scipy/integrate/_tanhsinh.py +1385 -0
  264. scipy/integrate/_test_multivariate.cp313t-win_arm64.lib +0 -0
  265. scipy/integrate/_test_multivariate.cp313t-win_arm64.pyd +0 -0
  266. scipy/integrate/_test_odeint_banded.cp313t-win_arm64.lib +0 -0
  267. scipy/integrate/_test_odeint_banded.cp313t-win_arm64.pyd +0 -0
  268. scipy/integrate/_vode.cp313t-win_arm64.lib +0 -0
  269. scipy/integrate/_vode.cp313t-win_arm64.pyd +0 -0
  270. scipy/integrate/dop.py +15 -0
  271. scipy/integrate/lsoda.py +15 -0
  272. scipy/integrate/odepack.py +17 -0
  273. scipy/integrate/quadpack.py +23 -0
  274. scipy/integrate/tests/__init__.py +0 -0
  275. scipy/integrate/tests/test__quad_vec.py +211 -0
  276. scipy/integrate/tests/test_banded_ode_solvers.py +305 -0
  277. scipy/integrate/tests/test_bvp.py +714 -0
  278. scipy/integrate/tests/test_cubature.py +1375 -0
  279. scipy/integrate/tests/test_integrate.py +840 -0
  280. scipy/integrate/tests/test_odeint_jac.py +74 -0
  281. scipy/integrate/tests/test_quadpack.py +680 -0
  282. scipy/integrate/tests/test_quadrature.py +730 -0
  283. scipy/integrate/tests/test_tanhsinh.py +1171 -0
  284. scipy/integrate/vode.py +15 -0
  285. scipy/interpolate/__init__.py +228 -0
  286. scipy/interpolate/_bary_rational.py +715 -0
  287. scipy/interpolate/_bsplines.py +2469 -0
  288. scipy/interpolate/_cubic.py +973 -0
  289. scipy/interpolate/_dfitpack.cp313t-win_arm64.lib +0 -0
  290. scipy/interpolate/_dfitpack.cp313t-win_arm64.pyd +0 -0
  291. scipy/interpolate/_dierckx.cp313t-win_arm64.lib +0 -0
  292. scipy/interpolate/_dierckx.cp313t-win_arm64.pyd +0 -0
  293. scipy/interpolate/_fitpack.cp313t-win_arm64.lib +0 -0
  294. scipy/interpolate/_fitpack.cp313t-win_arm64.pyd +0 -0
  295. scipy/interpolate/_fitpack2.py +2397 -0
  296. scipy/interpolate/_fitpack_impl.py +811 -0
  297. scipy/interpolate/_fitpack_py.py +898 -0
  298. scipy/interpolate/_fitpack_repro.py +996 -0
  299. scipy/interpolate/_interpnd.cp313t-win_arm64.lib +0 -0
  300. scipy/interpolate/_interpnd.cp313t-win_arm64.pyd +0 -0
  301. scipy/interpolate/_interpolate.py +2266 -0
  302. scipy/interpolate/_ndbspline.py +415 -0
  303. scipy/interpolate/_ndgriddata.py +329 -0
  304. scipy/interpolate/_pade.py +67 -0
  305. scipy/interpolate/_polyint.py +1025 -0
  306. scipy/interpolate/_ppoly.cp313t-win_arm64.lib +0 -0
  307. scipy/interpolate/_ppoly.cp313t-win_arm64.pyd +0 -0
  308. scipy/interpolate/_rbf.py +290 -0
  309. scipy/interpolate/_rbfinterp.py +550 -0
  310. scipy/interpolate/_rbfinterp_pythran.cp313t-win_arm64.lib +0 -0
  311. scipy/interpolate/_rbfinterp_pythran.cp313t-win_arm64.pyd +0 -0
  312. scipy/interpolate/_rgi.py +764 -0
  313. scipy/interpolate/_rgi_cython.cp313t-win_arm64.lib +0 -0
  314. scipy/interpolate/_rgi_cython.cp313t-win_arm64.pyd +0 -0
  315. scipy/interpolate/dfitpack.py +24 -0
  316. scipy/interpolate/fitpack.py +31 -0
  317. scipy/interpolate/fitpack2.py +29 -0
  318. scipy/interpolate/interpnd.py +24 -0
  319. scipy/interpolate/interpolate.py +30 -0
  320. scipy/interpolate/ndgriddata.py +23 -0
  321. scipy/interpolate/polyint.py +24 -0
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  1511. scipy/stats/tests/test_odds_ratio.py +148 -0
  1512. scipy/stats/tests/test_qmc.py +1492 -0
  1513. scipy/stats/tests/test_quantile.py +199 -0
  1514. scipy/stats/tests/test_rank.py +345 -0
  1515. scipy/stats/tests/test_relative_risk.py +95 -0
  1516. scipy/stats/tests/test_resampling.py +2000 -0
  1517. scipy/stats/tests/test_sampling.py +1450 -0
  1518. scipy/stats/tests/test_sensitivity_analysis.py +310 -0
  1519. scipy/stats/tests/test_stats.py +9707 -0
  1520. scipy/stats/tests/test_survival.py +466 -0
  1521. scipy/stats/tests/test_tukeylambda_stats.py +85 -0
  1522. scipy/stats/tests/test_variation.py +216 -0
  1523. scipy/version.py +12 -0
  1524. scipy-1.16.2.dist-info/DELVEWHEEL +2 -0
  1525. scipy-1.16.2.dist-info/LICENSE.txt +912 -0
  1526. scipy-1.16.2.dist-info/METADATA +1061 -0
  1527. scipy-1.16.2.dist-info/RECORD +1530 -0
  1528. scipy-1.16.2.dist-info/WHEEL +4 -0
  1529. scipy.libs/msvcp140-5f1c5dd31916990d94181e07bc3afb32.dll +0 -0
  1530. scipy.libs/scipy_openblas-f3ac85b1f412f7e86514c923dc4058d1.dll +0 -0
@@ -0,0 +1,886 @@
1
+ import re
2
+ import copy
3
+ import numpy as np
4
+
5
+ from numpy.testing import assert_allclose, assert_equal, assert_array_equal
6
+ import pytest
7
+
8
+ from scipy.linalg import svd, null_space
9
+ from scipy.sparse import csc_array, issparse, dia_array, random_array
10
+ from scipy.sparse.linalg import LinearOperator, aslinearoperator
11
+ from scipy.sparse.linalg import svds
12
+ from scipy.sparse.linalg._eigen.arpack import ArpackNoConvergence
13
+
14
+
15
+ # --- Helper Functions / Classes ---
16
+
17
+
18
+ def sorted_svd(m, k, which='LM'):
19
+ # Compute svd of a dense matrix m, and return singular vectors/values
20
+ # sorted.
21
+ if issparse(m):
22
+ m = m.toarray()
23
+ u, s, vh = svd(m)
24
+ if which == 'LM':
25
+ ii = np.argsort(s)[-k:]
26
+ elif which == 'SM':
27
+ ii = np.argsort(s)[:k]
28
+ else:
29
+ raise ValueError(f"unknown which={which!r}")
30
+
31
+ return u[:, ii], s[ii], vh[ii]
32
+
33
+
34
+ def _check_svds(A, k, u, s, vh, which="LM", check_usvh_A=False,
35
+ check_svd=True, atol=1e-10, rtol=1e-7):
36
+ n, m = A.shape
37
+
38
+ # Check shapes.
39
+ assert_equal(u.shape, (n, k))
40
+ assert_equal(s.shape, (k,))
41
+ assert_equal(vh.shape, (k, m))
42
+
43
+ # Check that the original matrix can be reconstituted.
44
+ A_rebuilt = (u*s).dot(vh)
45
+ assert_equal(A_rebuilt.shape, A.shape)
46
+ if check_usvh_A:
47
+ assert_allclose(A_rebuilt, A, atol=atol, rtol=rtol)
48
+
49
+ # Check that u is a semi-orthogonal matrix.
50
+ uh_u = np.dot(u.T.conj(), u)
51
+ assert_equal(uh_u.shape, (k, k))
52
+ assert_allclose(uh_u, np.identity(k), atol=atol, rtol=rtol)
53
+
54
+ # Check that vh is a semi-orthogonal matrix.
55
+ vh_v = np.dot(vh, vh.T.conj())
56
+ assert_equal(vh_v.shape, (k, k))
57
+ assert_allclose(vh_v, np.identity(k), atol=atol, rtol=rtol)
58
+
59
+ # Check that scipy.sparse.linalg.svds ~ scipy.linalg.svd
60
+ if check_svd:
61
+ u2, s2, vh2 = sorted_svd(A, k, which)
62
+ assert_allclose(np.abs(u), np.abs(u2), atol=atol, rtol=rtol)
63
+ assert_allclose(s, s2, atol=atol, rtol=rtol)
64
+ assert_allclose(np.abs(vh), np.abs(vh2), atol=atol, rtol=rtol)
65
+
66
+
67
+ def _check_svds_n(A, k, u, s, vh, which="LM", check_res=True,
68
+ check_svd=True, atol=1e-10, rtol=1e-7):
69
+ n, m = A.shape
70
+
71
+ # Check shapes.
72
+ assert_equal(u.shape, (n, k))
73
+ assert_equal(s.shape, (k,))
74
+ assert_equal(vh.shape, (k, m))
75
+
76
+ # Check that u is a semi-orthogonal matrix.
77
+ uh_u = np.dot(u.T.conj(), u)
78
+ assert_equal(uh_u.shape, (k, k))
79
+ error = np.sum(np.abs(uh_u - np.identity(k))) / (k * k)
80
+ assert_allclose(error, 0.0, atol=atol, rtol=rtol)
81
+
82
+ # Check that vh is a semi-orthogonal matrix.
83
+ vh_v = np.dot(vh, vh.T.conj())
84
+ assert_equal(vh_v.shape, (k, k))
85
+ error = np.sum(np.abs(vh_v - np.identity(k))) / (k * k)
86
+ assert_allclose(error, 0.0, atol=atol, rtol=rtol)
87
+
88
+ # Check residuals
89
+ if check_res:
90
+ ru = A.T.conj() @ u - vh.T.conj() * s
91
+ rus = np.sum(np.abs(ru)) / (n * k)
92
+ rvh = A @ vh.T.conj() - u * s
93
+ rvhs = np.sum(np.abs(rvh)) / (m * k)
94
+ assert_allclose(rus, 0.0, atol=atol, rtol=rtol)
95
+ assert_allclose(rvhs, 0.0, atol=atol, rtol=rtol)
96
+
97
+ # Check that scipy.sparse.linalg.svds ~ scipy.linalg.svd
98
+ if check_svd:
99
+ u2, s2, vh2 = sorted_svd(A, k, which)
100
+ assert_allclose(s, s2, atol=atol, rtol=rtol)
101
+ A_rebuilt_svd = (u2*s2).dot(vh2)
102
+ A_rebuilt = (u*s).dot(vh)
103
+ assert_equal(A_rebuilt.shape, A.shape)
104
+ error = np.sum(np.abs(A_rebuilt_svd - A_rebuilt)) / (k * k)
105
+ assert_allclose(error, 0.0, atol=atol, rtol=rtol)
106
+
107
+
108
+ class CheckingLinearOperator(LinearOperator):
109
+ def __init__(self, A):
110
+ self.A = A
111
+ self.dtype = A.dtype
112
+ self.shape = A.shape
113
+
114
+ def _matvec(self, x):
115
+ assert_equal(max(x.shape), np.size(x))
116
+ return self.A.dot(x)
117
+
118
+ def _rmatvec(self, x):
119
+ assert_equal(max(x.shape), np.size(x))
120
+ return self.A.T.conjugate().dot(x)
121
+
122
+
123
+ # --- Test Input Validation ---
124
+ # Tests input validation on parameters `k` and `which`.
125
+ # Needs better input validation checks for all other parameters.
126
+
127
+ class SVDSCommonTests:
128
+
129
+ solver = None
130
+
131
+ # some of these IV tests could run only once, say with solver=None
132
+
133
+ _A_empty_msg = "`A` must not be empty."
134
+ _A_dtype_msg = "`A` must be of numeric data type"
135
+ _A_type_msg = "type not understood"
136
+ _A_ndim_msg = "array must have ndim <= 2"
137
+ _A_validation_inputs = [
138
+ (np.asarray([[]]), ValueError, _A_empty_msg),
139
+ (np.array([['a', 'b'], ['c', 'd']], dtype='object'), ValueError, _A_dtype_msg),
140
+ ("hi", TypeError, _A_type_msg),
141
+ (np.asarray([[[1., 2.], [3., 4.]]]), ValueError, _A_ndim_msg)]
142
+
143
+ @pytest.mark.parametrize("args", _A_validation_inputs)
144
+ def test_svds_input_validation_A(self, args):
145
+ A, error_type, message = args
146
+ with pytest.raises(error_type, match=message):
147
+ svds(A, k=1, solver=self.solver, rng=0)
148
+
149
+ @pytest.mark.parametrize("which", ["LM", "SM"])
150
+ def test_svds_int_A(self, which):
151
+ A = np.asarray([[1, 2], [3, 4]])
152
+ if self.solver == 'lobpcg':
153
+ with pytest.warns(UserWarning, match="The problem size"):
154
+ res = svds(A, k=1, which=which, solver=self.solver, rng=0)
155
+ else:
156
+ res = svds(A, k=1, which=which, solver=self.solver, rng=0)
157
+ _check_svds(A, 1, *res, which=which, atol=8e-10)
158
+
159
+ def test_svds_diff0_docstring_example(self):
160
+ def diff0(a):
161
+ return np.diff(a, axis=0)
162
+ def diff0t(a):
163
+ if a.ndim == 1:
164
+ a = a[:,np.newaxis] # Turn 1D into 2D array
165
+ d = np.zeros((a.shape[0] + 1, a.shape[1]), dtype=a.dtype)
166
+ d[0, :] = - a[0, :]
167
+ d[1:-1, :] = a[0:-1, :] - a[1:, :]
168
+ d[-1, :] = a[-1, :]
169
+ return d
170
+ def diff0_func_aslo_def(n):
171
+ return LinearOperator(matvec=diff0,
172
+ matmat=diff0,
173
+ rmatvec=diff0t,
174
+ rmatmat=diff0t,
175
+ shape=(n - 1, n))
176
+ n = 100
177
+ diff0_func_aslo = diff0_func_aslo_def(n)
178
+ # preserve a use of legacy keyword `random_state` during SPEC 7 transition
179
+ u, s, _ = svds(diff0_func_aslo, k=3, which='SM', random_state=0)
180
+ se = 2. * np.sin(np.pi * np.arange(1, 4) / (2. * n))
181
+ ue = np.sqrt(2 / n) * np.sin(np.pi * np.outer(np.arange(1, n),
182
+ np.arange(1, 4)) / n)
183
+ assert_allclose(s, se, atol=1e-3)
184
+ assert_allclose(np.abs(u), np.abs(ue), atol=1e-6)
185
+
186
+ @pytest.mark.parametrize("k", [-1, 0, 3, 4, 5, 1.5, "1"])
187
+ def test_svds_input_validation_k_1(self, k):
188
+ rng = np.random.default_rng(0)
189
+ A = rng.random((4, 3))
190
+
191
+ # propack can do complete SVD
192
+ if self.solver == 'propack' and k == 3:
193
+ res = svds(A, k=k, solver=self.solver, rng=0)
194
+ _check_svds(A, k, *res, check_usvh_A=True, check_svd=True)
195
+ return
196
+
197
+ message = ("`k` must be an integer satisfying")
198
+ with pytest.raises(ValueError, match=message):
199
+ svds(A, k=k, solver=self.solver, rng=0)
200
+
201
+ def test_svds_input_validation_k_2(self):
202
+ # I think the stack trace is reasonable when `k` can't be converted
203
+ # to an int.
204
+ message = "int() argument must be a"
205
+ with pytest.raises(TypeError, match=re.escape(message)):
206
+ svds(np.eye(10), k=[], solver=self.solver, rng=0)
207
+
208
+ message = "invalid literal for int()"
209
+ with pytest.raises(ValueError, match=message):
210
+ svds(np.eye(10), k="hi", solver=self.solver, rng=0)
211
+
212
+ @pytest.mark.parametrize("tol", (-1, np.inf, np.nan))
213
+ def test_svds_input_validation_tol_1(self, tol):
214
+ message = "`tol` must be a non-negative floating point value."
215
+ with pytest.raises(ValueError, match=message):
216
+ svds(np.eye(10), tol=tol, solver=self.solver, rng=0)
217
+
218
+ @pytest.mark.parametrize("tol", ([], 'hi'))
219
+ def test_svds_input_validation_tol_2(self, tol):
220
+ # I think the stack trace is reasonable here
221
+ message = "'<' not supported between instances"
222
+ with pytest.raises(TypeError, match=message):
223
+ svds(np.eye(10), tol=tol, solver=self.solver, rng=0)
224
+
225
+ @pytest.mark.parametrize("which", ('LA', 'SA', 'ekki', 0))
226
+ def test_svds_input_validation_which(self, which):
227
+ # Regression test for a github issue.
228
+ # https://github.com/scipy/scipy/issues/4590
229
+ # Function was not checking for eigenvalue type and unintended
230
+ # values could be returned.
231
+ with pytest.raises(ValueError, match="`which` must be in"):
232
+ svds(np.eye(10), which=which, solver=self.solver, rng=0)
233
+
234
+ @pytest.mark.parametrize("transpose", (True, False))
235
+ @pytest.mark.parametrize("n", range(4, 9))
236
+ def test_svds_input_validation_v0_1(self, transpose, n):
237
+ rng = np.random.default_rng(0)
238
+ A = rng.random((5, 7))
239
+ v0 = rng.random(n)
240
+ if transpose:
241
+ A = A.T
242
+ k = 2
243
+ message = "`v0` must have shape"
244
+
245
+ required_length = (A.shape[0] if self.solver == 'propack'
246
+ else min(A.shape))
247
+ if n != required_length:
248
+ with pytest.raises(ValueError, match=message):
249
+ svds(A, k=k, v0=v0, solver=self.solver, rng=0)
250
+
251
+ def test_svds_input_validation_v0_2(self):
252
+ A = np.ones((10, 10))
253
+ v0 = np.ones((1, 10))
254
+ message = "`v0` must have shape"
255
+ with pytest.raises(ValueError, match=message):
256
+ svds(A, k=1, v0=v0, solver=self.solver, rng=0)
257
+
258
+ @pytest.mark.parametrize("v0", ("hi", 1, np.ones(10, dtype=int)))
259
+ def test_svds_input_validation_v0_3(self, v0):
260
+ A = np.ones((10, 10))
261
+ message = "`v0` must be of floating or complex floating data type."
262
+ with pytest.raises(ValueError, match=message):
263
+ svds(A, k=1, v0=v0, solver=self.solver, rng=0)
264
+
265
+ @pytest.mark.parametrize("maxiter", (-1, 0, 5.5))
266
+ def test_svds_input_validation_maxiter_1(self, maxiter):
267
+ message = ("`maxiter` must be a positive integer.")
268
+ with pytest.raises(ValueError, match=message):
269
+ svds(np.eye(10), maxiter=maxiter, solver=self.solver, rng=0)
270
+
271
+ def test_svds_input_validation_maxiter_2(self):
272
+ # I think the stack trace is reasonable when `k` can't be converted
273
+ # to an int.
274
+ message = "int() argument must be a"
275
+ with pytest.raises(TypeError, match=re.escape(message)):
276
+ svds(np.eye(10), maxiter=[], solver=self.solver, rng=0)
277
+
278
+ message = "invalid literal for int()"
279
+ with pytest.raises(ValueError, match=message):
280
+ svds(np.eye(10), maxiter="hi", solver=self.solver, rng=0)
281
+
282
+ @pytest.mark.parametrize("rsv", ('ekki', 10))
283
+ def test_svds_input_validation_return_singular_vectors(self, rsv):
284
+ message = "`return_singular_vectors` must be in"
285
+ with pytest.raises(ValueError, match=message):
286
+ svds(np.eye(10), return_singular_vectors=rsv, solver=self.solver, rng=0)
287
+
288
+ # --- Test Parameters ---
289
+ @pytest.mark.thread_unsafe
290
+ @pytest.mark.parametrize("k", [3, 5])
291
+ @pytest.mark.parametrize("which", ["LM", "SM"])
292
+ def test_svds_parameter_k_which(self, k, which):
293
+ # check that the `k` parameter sets the number of eigenvalues/
294
+ # eigenvectors returned.
295
+ # Also check that the `which` parameter sets whether the largest or
296
+ # smallest eigenvalues are returned
297
+ rng = np.random.default_rng(0)
298
+ A = rng.random((10, 10))
299
+ if self.solver == 'lobpcg':
300
+ with pytest.warns(UserWarning, match="The problem size"):
301
+ res = svds(A, k=k, which=which, solver=self.solver, rng=0)
302
+ else:
303
+ res = svds(A, k=k, which=which, solver=self.solver, rng=0)
304
+ _check_svds(A, k, *res, which=which, atol=1e-9, rtol=2e-13)
305
+
306
+ @pytest.mark.filterwarnings("ignore:Exited",
307
+ reason="Ignore LOBPCG early exit.")
308
+ # loop instead of parametrize for simplicity
309
+ def test_svds_parameter_tol(self):
310
+ # check the effect of the `tol` parameter on solver accuracy by solving
311
+ # the same problem with varying `tol` and comparing the eigenvalues
312
+ # against ground truth computed
313
+ n = 100 # matrix size
314
+ k = 3 # number of eigenvalues to check
315
+
316
+ # generate a random, sparse-ish matrix
317
+ # effect isn't apparent for matrices that are too small
318
+ rng = np.random.default_rng(0)
319
+ A = rng.random((n, n))
320
+ A[A > .1] = 0
321
+ A = A @ A.T
322
+
323
+ _, s, _ = svd(A) # calculate ground truth
324
+
325
+ # calculate the error as a function of `tol`
326
+ A = csc_array(A)
327
+
328
+ def err(tol):
329
+ _, s2, _ = svds(A, k=k, v0=np.ones(n), maxiter=1000,
330
+ solver=self.solver, tol=tol, rng=0)
331
+ return np.linalg.norm((s2 - s[k-1::-1])/s[k-1::-1])
332
+
333
+ tols = [1e-4, 1e-2, 1e0] # tolerance levels to check
334
+ # for 'arpack' and 'propack', accuracies make discrete steps
335
+ accuracies = {'propack': [1e-12, 1e-6, 1e-4],
336
+ 'arpack': [2.5e-15, 1e-10, 1e-10],
337
+ 'lobpcg': [2e-12, 4e-2, 2]}
338
+
339
+ for tol, accuracy in zip(tols, accuracies[self.solver]):
340
+ error = err(tol)
341
+ assert error < accuracy
342
+
343
+ def test_svd_v0(self):
344
+ # check that the `v0` parameter affects the solution
345
+ n = 100
346
+ k = 1
347
+ # If k != 1, LOBPCG needs more initial vectors, which are generated
348
+ # with rng, so it does not pass w/ k >= 2.
349
+ # For some other values of `n`, the AssertionErrors are not raised
350
+ # with different v0s, which is reasonable.
351
+
352
+ rng = np.random.default_rng(0)
353
+ A = rng.random((n, n))
354
+
355
+ # with the same v0, solutions are the same, and they are accurate
356
+ # v0 takes precedence over rng
357
+ v0a = rng.random(n)
358
+ res1a = svds(A, k, v0=v0a, solver=self.solver, rng=0)
359
+ res2a = svds(A, k, v0=v0a, solver=self.solver, rng=1)
360
+ for idx in range(3):
361
+ assert_allclose(res1a[idx], res2a[idx], rtol=1e-15, atol=2e-16)
362
+ _check_svds(A, k, *res1a)
363
+
364
+ # with the same v0, solutions are the same, and they are accurate
365
+ v0b = rng.random(n)
366
+ res1b = svds(A, k, v0=v0b, solver=self.solver, rng=2)
367
+ res2b = svds(A, k, v0=v0b, solver=self.solver, rng=3)
368
+ for idx in range(3):
369
+ assert_allclose(res1b[idx], res2b[idx], rtol=1e-15, atol=2e-16)
370
+ _check_svds(A, k, *res1b)
371
+
372
+ # with different v0, solutions can be numerically different
373
+ message = "Arrays are not equal"
374
+ with pytest.raises(AssertionError, match=message):
375
+ assert_equal(res1a, res1b)
376
+
377
+ def test_svd_rng(self):
378
+ # check that the `rng` parameter affects the solution
379
+ # Admittedly, `n` and `k` are chosen so that all solver pass all
380
+ # these checks. That's a tall order, since LOBPCG doesn't want to
381
+ # achieve the desired accuracy and ARPACK often returns the same
382
+ # singular values/vectors for different v0.
383
+ n = 100
384
+ k = 1
385
+
386
+ rng = np.random.default_rng(0)
387
+ A = rng.random((n, n))
388
+
389
+ # with the same rng, solutions are the same and accurate
390
+ res1a = svds(A, k, solver=self.solver, rng=0)
391
+ res2a = svds(A, k, solver=self.solver, rng=0)
392
+ for idx in range(3):
393
+ assert_allclose(res1a[idx], res2a[idx], rtol=1e-15, atol=2e-16)
394
+ _check_svds(A, k, *res1a)
395
+
396
+ # with the same rng, solutions are the same and accurate
397
+ res1b = svds(A, k, solver=self.solver, rng=1)
398
+ res2b = svds(A, k, solver=self.solver, rng=1)
399
+ for idx in range(3):
400
+ assert_allclose(res1b[idx], res2b[idx], rtol=1e-15, atol=2e-16)
401
+ _check_svds(A, k, *res1b)
402
+
403
+ # with different rng, solutions can be numerically different
404
+ message = "Arrays are not equal"
405
+ with pytest.raises(AssertionError, match=message):
406
+ assert_equal(res1a, res1b)
407
+
408
+ def test_svd_rng_2(self):
409
+ n = 100
410
+ k = 1
411
+
412
+ rng = np.random.default_rng(234981)
413
+ A = rng.random((n, n))
414
+ rng_2 = copy.deepcopy(rng)
415
+
416
+ # with the same rng, solutions are the same and accurate
417
+ res1a = svds(A, k, solver=self.solver, rng=rng)
418
+ res2a = svds(A, k, solver=self.solver, rng=rng_2)
419
+ for idx in range(3):
420
+ assert_allclose(res1a[idx], res2a[idx], rtol=1e-15, atol=2e-16)
421
+ _check_svds(A, k, *res1a)
422
+
423
+ @pytest.mark.filterwarnings("ignore:Exited",
424
+ reason="Ignore LOBPCG early exit.")
425
+ def test_svd_rng_3(self):
426
+ n = 100
427
+ k = 5
428
+
429
+ rng1 = np.random.default_rng(0)
430
+ rng2 = np.random.default_rng(234832)
431
+ A = rng1.random((n, n))
432
+
433
+ # rng in different state produces accurate - but not
434
+ # not necessarily identical - results
435
+ res1a = svds(A, k, solver=self.solver, rng=rng1, maxiter=1000)
436
+ res2a = svds(A, k, solver=self.solver, rng=rng2, maxiter=1000)
437
+ _check_svds(A, k, *res1a, atol=2e-7)
438
+ _check_svds(A, k, *res2a, atol=2e-7)
439
+
440
+ message = "Arrays are not equal"
441
+ with pytest.raises(AssertionError, match=message):
442
+ assert_equal(res1a, res2a)
443
+
444
+ @pytest.mark.thread_unsafe
445
+ @pytest.mark.filterwarnings("ignore:Exited postprocessing")
446
+ def test_svd_maxiter(self):
447
+ # check that maxiter works as expected: should not return accurate
448
+ # solution after 1 iteration, but should with default `maxiter`
449
+ A = np.diag(np.arange(9)).astype(np.float64)
450
+ k = 1
451
+ u, s, vh = sorted_svd(A, k)
452
+ # Use default maxiter by default
453
+ maxiter = None
454
+
455
+ if self.solver == 'arpack':
456
+ message = "ARPACK error -1: No convergence"
457
+ with pytest.raises(ArpackNoConvergence, match=message):
458
+ svds(A, k, ncv=3, maxiter=1, solver=self.solver, rng=0)
459
+ elif self.solver == 'lobpcg':
460
+ # Set maxiter higher so test passes without changing
461
+ # default and breaking backward compatibility (gh-20221)
462
+ maxiter = 30
463
+ with pytest.warns(UserWarning, match="Exited at iteration"):
464
+ svds(A, k, maxiter=1, solver=self.solver, rng=0)
465
+ elif self.solver == 'propack':
466
+ message = "k=1 singular triplets did not converge within"
467
+ with pytest.raises(np.linalg.LinAlgError, match=message):
468
+ svds(A, k, maxiter=1, solver=self.solver, rng=0)
469
+
470
+ ud, sd, vhd = svds(A, k, solver=self.solver, maxiter=maxiter, rng=0)
471
+ _check_svds(A, k, ud, sd, vhd, atol=1e-8)
472
+ assert_allclose(np.abs(ud), np.abs(u), atol=1e-8)
473
+ assert_allclose(np.abs(vhd), np.abs(vh), atol=1e-8)
474
+ assert_allclose(np.abs(sd), np.abs(s), atol=1e-9)
475
+
476
+ @pytest.mark.thread_unsafe
477
+ @pytest.mark.parametrize("rsv", (True, False, 'u', 'vh'))
478
+ @pytest.mark.parametrize("shape", ((5, 7), (6, 6), (7, 5)))
479
+ def test_svd_return_singular_vectors(self, rsv, shape):
480
+ # check that the return_singular_vectors parameter works as expected
481
+ rng = np.random.default_rng(0)
482
+ A = rng.random(shape)
483
+ k = 2
484
+ M, N = shape
485
+ u, s, vh = sorted_svd(A, k)
486
+
487
+ respect_u = True if self.solver == 'propack' else M <= N
488
+ respect_vh = True if self.solver == 'propack' else M > N
489
+
490
+ if self.solver == 'lobpcg':
491
+ with pytest.warns(UserWarning, match="The problem size"):
492
+ if rsv is False:
493
+ s2 = svds(A, k, return_singular_vectors=rsv,
494
+ solver=self.solver, rng=rng)
495
+ assert_allclose(s2, s)
496
+ elif rsv == 'u' and respect_u:
497
+ u2, s2, vh2 = svds(A, k, return_singular_vectors=rsv,
498
+ solver=self.solver, rng=rng)
499
+ assert_allclose(np.abs(u2), np.abs(u))
500
+ assert_allclose(s2, s)
501
+ assert vh2 is None
502
+ elif rsv == 'vh' and respect_vh:
503
+ u2, s2, vh2 = svds(A, k, return_singular_vectors=rsv,
504
+ solver=self.solver, rng=rng)
505
+ assert u2 is None
506
+ assert_allclose(s2, s)
507
+ assert_allclose(np.abs(vh2), np.abs(vh))
508
+ else:
509
+ u2, s2, vh2 = svds(A, k, return_singular_vectors=rsv,
510
+ solver=self.solver, rng=rng)
511
+ if u2 is not None:
512
+ assert_allclose(np.abs(u2), np.abs(u))
513
+ assert_allclose(s2, s)
514
+ if vh2 is not None:
515
+ assert_allclose(np.abs(vh2), np.abs(vh))
516
+ else:
517
+ if rsv is False:
518
+ s2 = svds(A, k, return_singular_vectors=rsv,
519
+ solver=self.solver, rng=rng)
520
+ assert_allclose(s2, s)
521
+ elif rsv == 'u' and respect_u:
522
+ u2, s2, vh2 = svds(A, k, return_singular_vectors=rsv,
523
+ solver=self.solver, rng=rng)
524
+ assert_allclose(np.abs(u2), np.abs(u))
525
+ assert_allclose(s2, s)
526
+ assert vh2 is None
527
+ elif rsv == 'vh' and respect_vh:
528
+ u2, s2, vh2 = svds(A, k, return_singular_vectors=rsv,
529
+ solver=self.solver, rng=rng)
530
+ assert u2 is None
531
+ assert_allclose(s2, s)
532
+ assert_allclose(np.abs(vh2), np.abs(vh))
533
+ else:
534
+ u2, s2, vh2 = svds(A, k, return_singular_vectors=rsv,
535
+ solver=self.solver, rng=rng)
536
+ if u2 is not None:
537
+ assert_allclose(np.abs(u2), np.abs(u))
538
+ assert_allclose(s2, s)
539
+ if vh2 is not None:
540
+ assert_allclose(np.abs(vh2), np.abs(vh))
541
+
542
+ # --- Test Basic Functionality ---
543
+ # Tests the accuracy of each solver for real and complex matrices provided
544
+ # as list, dense array, sparse matrix, and LinearOperator.
545
+
546
+ A1 = [[1, 2, 3], [3, 4, 3], [1 + 1j, 0, 2], [0, 0, 1]]
547
+ A2 = [[1, 2, 3, 8 + 5j], [3 - 2j, 4, 3, 5], [1, 0, 2, 3], [0, 0, 1, 0]]
548
+
549
+ @pytest.mark.thread_unsafe
550
+ @pytest.mark.filterwarnings("ignore:k >= N - 1",
551
+ reason="needed to demonstrate #16725")
552
+ @pytest.mark.parametrize('A', (A1, A2))
553
+ @pytest.mark.parametrize('k', range(1, 5))
554
+ # PROPACK fails a lot if @pytest.mark.parametrize('which', ("SM", "LM"))
555
+ @pytest.mark.parametrize('real', (True, False))
556
+ @pytest.mark.parametrize('transpose', (False, True))
557
+ # In gh-14299, it was suggested the `svds` should _not_ work with lists
558
+ @pytest.mark.parametrize('lo_type', (np.asarray, csc_array,
559
+ aslinearoperator))
560
+ def test_svd_simple(self, A, k, real, transpose, lo_type):
561
+
562
+ A = np.asarray(A)
563
+ A = np.real(A) if real else A
564
+ A = A.T if transpose else A
565
+ A2 = lo_type(A)
566
+
567
+ # could check for the appropriate errors, but that is tested above
568
+ if k > min(A.shape):
569
+ pytest.skip("`k` cannot be greater than `min(A.shape)`")
570
+ if self.solver != 'propack' and k >= min(A.shape):
571
+ pytest.skip("Only PROPACK supports complete SVD")
572
+ if self.solver == 'arpack' and not real and k == min(A.shape) - 1:
573
+ pytest.skip("#16725")
574
+
575
+ atol = 3e-10
576
+ if self.solver == 'propack':
577
+ atol = 3e-9 # otherwise test fails on Linux aarch64 (see gh-19855)
578
+
579
+ if self.solver == 'lobpcg':
580
+ with pytest.warns(UserWarning, match="The problem size"):
581
+ u, s, vh = svds(A2, k, solver=self.solver, rng=0)
582
+ else:
583
+ u, s, vh = svds(A2, k, solver=self.solver, rng=0)
584
+ _check_svds(A, k, u, s, vh, atol=atol)
585
+
586
+ @pytest.mark.thread_unsafe
587
+ def test_svd_linop(self):
588
+ solver = self.solver
589
+
590
+ nmks = [(6, 7, 3),
591
+ (9, 5, 4),
592
+ (10, 8, 5)]
593
+
594
+ def reorder(args):
595
+ U, s, VH = args
596
+ j = np.argsort(s)
597
+ return U[:, j], s[j], VH[j, :]
598
+
599
+ for n, m, k in nmks:
600
+ # Test svds on a LinearOperator.
601
+ A = np.random.RandomState(52).randn(n, m)
602
+ L = CheckingLinearOperator(A)
603
+
604
+ if solver == 'propack':
605
+ v0 = np.ones(n)
606
+ else:
607
+ v0 = np.ones(min(A.shape))
608
+ if solver == 'lobpcg':
609
+ with pytest.warns(UserWarning, match="The problem size"):
610
+ U1, s1, VH1 = reorder(svds(A, k, v0=v0, solver=solver, rng=0))
611
+ U2, s2, VH2 = reorder(svds(L, k, v0=v0, solver=solver, rng=0))
612
+ else:
613
+ U1, s1, VH1 = reorder(svds(A, k, v0=v0, solver=solver, rng=0))
614
+ U2, s2, VH2 = reorder(svds(L, k, v0=v0, solver=solver, rng=0))
615
+
616
+ assert_allclose(np.abs(U1), np.abs(U2))
617
+ assert_allclose(s1, s2)
618
+ assert_allclose(np.abs(VH1), np.abs(VH2))
619
+ assert_allclose(np.dot(U1, np.dot(np.diag(s1), VH1)),
620
+ np.dot(U2, np.dot(np.diag(s2), VH2)))
621
+
622
+ # Try again with which="SM".
623
+ A = np.random.RandomState(1909).randn(n, m)
624
+ L = CheckingLinearOperator(A)
625
+
626
+ # TODO: arpack crashes when v0=v0, which="SM"
627
+ kwargs = {'v0': v0} if solver not in {None, 'arpack'} else {}
628
+ if self.solver == 'lobpcg':
629
+ with pytest.warns(UserWarning, match="The problem size"):
630
+ U1, s1, VH1 = reorder(svds(A, k, which="SM", solver=solver,
631
+ rng=0, **kwargs))
632
+ U2, s2, VH2 = reorder(svds(L, k, which="SM", solver=solver,
633
+ rng=0, **kwargs))
634
+ else:
635
+ U1, s1, VH1 = reorder(svds(A, k, which="SM", solver=solver,
636
+ rng=0, **kwargs))
637
+ U2, s2, VH2 = reorder(svds(L, k, which="SM", solver=solver,
638
+ rng=0, **kwargs))
639
+
640
+ assert_allclose(np.abs(U1), np.abs(U2))
641
+ assert_allclose(s1 + 1, s2 + 1)
642
+ assert_allclose(np.abs(VH1), np.abs(VH2))
643
+ assert_allclose(np.dot(U1, np.dot(np.diag(s1), VH1)),
644
+ np.dot(U2, np.dot(np.diag(s2), VH2)))
645
+
646
+ if k < min(n, m) - 1:
647
+ # Complex input and explicit which="LM".
648
+ for (dt, eps) in [(complex, 1e-7), (np.complex64, 3e-3)]:
649
+ rng = np.random.RandomState(1648)
650
+ A = (rng.randn(n, m) + 1j * rng.randn(n, m)).astype(dt)
651
+ L = CheckingLinearOperator(A)
652
+
653
+ if self.solver == 'lobpcg':
654
+ with pytest.warns(UserWarning,
655
+ match="The problem size"):
656
+ U1, s1, VH1 = reorder(svds(A, k, which="LM",
657
+ solver=solver, rng=0))
658
+ U2, s2, VH2 = reorder(svds(L, k, which="LM",
659
+ solver=solver, rng=0))
660
+ else:
661
+ U1, s1, VH1 = reorder(svds(A, k, which="LM",
662
+ solver=solver, rng=0))
663
+ U2, s2, VH2 = reorder(svds(L, k, which="LM",
664
+ solver=solver, rng=0))
665
+
666
+ assert_allclose(np.abs(U1), np.abs(U2), rtol=eps)
667
+ assert_allclose(s1, s2, rtol=eps)
668
+ assert_allclose(np.abs(VH1), np.abs(VH2), rtol=eps)
669
+ assert_allclose(np.dot(U1, np.dot(np.diag(s1), VH1)),
670
+ np.dot(U2, np.dot(np.diag(s2), VH2)),
671
+ rtol=eps)
672
+
673
+ SHAPES = ((100, 100), (100, 101), (101, 100))
674
+
675
+ @pytest.mark.filterwarnings("ignore:Exited at iteration")
676
+ @pytest.mark.filterwarnings("ignore:Exited postprocessing")
677
+ @pytest.mark.parametrize("shape", SHAPES)
678
+ # ARPACK supports only dtype float, complex, or np.float32
679
+ @pytest.mark.parametrize("dtype", (float, complex, np.float32))
680
+ def test_small_sigma_sparse(self, shape, dtype):
681
+ # https://github.com/scipy/scipy/pull/11829
682
+ solver = self.solver
683
+ # 2do: PROPACK fails orthogonality of singular vectors
684
+ # if dtype == complex and self.solver == 'propack':
685
+ # pytest.skip("PROPACK unsupported for complex dtype")
686
+ rng = np.random.default_rng(0)
687
+ k = 5
688
+ (m, n) = shape
689
+ S = random_array(shape=(m, n), density=0.1, rng=rng)
690
+ if dtype is complex:
691
+ S = + 1j * random_array(shape=(m, n), density=0.1, rng=rng)
692
+ e = np.ones(m)
693
+ e[0:5] *= 1e1 ** np.arange(-5, 0, 1)
694
+ S = dia_array((e, 0), shape=(m, m)) @ S
695
+ S = S.astype(dtype)
696
+ u, s, vh = svds(S, k, which='SM', solver=solver, maxiter=1000, rng=0)
697
+ c_svd = False # partial SVD can be different from full SVD
698
+ _check_svds_n(S, k, u, s, vh, which="SM", check_svd=c_svd, atol=2e-1)
699
+
700
+ # --- Test Edge Cases ---
701
+ # Checks a few edge cases.
702
+ @pytest.mark.thread_unsafe
703
+ @pytest.mark.parametrize("shape", ((6, 5), (5, 5), (5, 6)))
704
+ @pytest.mark.parametrize("dtype", (float, complex))
705
+ def test_svd_LM_ones_matrix(self, shape, dtype):
706
+ # Check that svds can deal with matrix_rank less than k in LM mode.
707
+ k = 3
708
+ n, m = shape
709
+ A = np.ones((n, m), dtype=dtype)
710
+
711
+ if self.solver == 'lobpcg':
712
+ with pytest.warns(UserWarning, match="The problem size"):
713
+ U, s, VH = svds(A, k, solver=self.solver, rng=0)
714
+ else:
715
+ U, s, VH = svds(A, k, solver=self.solver, rng=0)
716
+
717
+ _check_svds(A, k, U, s, VH, check_usvh_A=True, check_svd=False)
718
+
719
+ # Check that the largest singular value is near sqrt(n*m)
720
+ # and the other singular values have been forced to zero.
721
+ assert_allclose(np.max(s), np.sqrt(n*m))
722
+ s = np.array(sorted(s)[:-1]) + 1
723
+ z = np.ones_like(s)
724
+ assert_allclose(s, z)
725
+
726
+ @pytest.mark.thread_unsafe
727
+ @pytest.mark.filterwarnings("ignore:k >= N - 1",
728
+ reason="needed to demonstrate #16725")
729
+ @pytest.mark.parametrize("shape", ((3, 4), (4, 4), (4, 3), (4, 2)))
730
+ @pytest.mark.parametrize("dtype", (float, complex))
731
+ def test_zero_matrix(self, shape, dtype):
732
+ # Check that svds can deal with matrices containing only zeros;
733
+ # see https://github.com/scipy/scipy/issues/3452/
734
+ # shape = (4, 2) is included because it is the particular case
735
+ # reported in the issue
736
+ k = 1
737
+ n, m = shape
738
+ A = np.zeros((n, m), dtype=dtype)
739
+
740
+ if (self.solver == 'arpack'):
741
+ pytest.skip('See gh-21110.')
742
+
743
+ if (self.solver == 'arpack' and dtype is complex
744
+ and k == min(A.shape) - 1):
745
+ pytest.skip("#16725")
746
+
747
+ if self.solver == 'propack':
748
+ pytest.skip("PROPACK failures unrelated to PR #16712")
749
+
750
+ if self.solver == 'lobpcg':
751
+ with pytest.warns(UserWarning, match="The problem size"):
752
+ U, s, VH = svds(A, k, solver=self.solver, rng=0)
753
+ else:
754
+ U, s, VH = svds(A, k, solver=self.solver, rng=0)
755
+
756
+ # Check some generic properties of svd.
757
+ _check_svds(A, k, U, s, VH, check_usvh_A=True, check_svd=False)
758
+
759
+ # Check that the singular values are zero.
760
+ assert_array_equal(s, 0)
761
+
762
+ @pytest.mark.parametrize("shape", ((20, 20), (20, 21), (21, 20)))
763
+ # ARPACK supports only dtype float, complex, or np.float32
764
+ @pytest.mark.parametrize("dtype", (float, complex, np.float32))
765
+ @pytest.mark.filterwarnings("ignore:Exited",
766
+ reason="Ignore LOBPCG early exit.")
767
+ def test_small_sigma(self, shape, dtype):
768
+ rng = np.random.default_rng(179847540)
769
+ A = rng.random(shape).astype(dtype)
770
+ u, _, vh = svd(A, full_matrices=False)
771
+ if dtype == np.float32:
772
+ e = 10.0
773
+ else:
774
+ e = 100.0
775
+ t = e**(-np.arange(len(vh))).astype(dtype)
776
+ A = (u*t).dot(vh)
777
+ k = 4
778
+ u, s, vh = svds(A, k, solver=self.solver, maxiter=100, rng=0)
779
+ t = np.sum(s > 0)
780
+ assert_equal(t, k)
781
+ # LOBPCG needs larger atol and rtol to pass
782
+ _check_svds_n(A, k, u, s, vh, atol=1e-3, rtol=1e0, check_svd=False)
783
+
784
+ # ARPACK supports only dtype float, complex, or np.float32
785
+ @pytest.mark.filterwarnings("ignore:The problem size")
786
+ @pytest.mark.parametrize("dtype", (float, complex, np.float32))
787
+ def test_small_sigma2(self, dtype):
788
+ rng = np.random.default_rng(179847540)
789
+ # create a 10x10 singular matrix with a 4-dim null space
790
+ dim = 4
791
+ size = 10
792
+ x = rng.random((size, size-dim))
793
+ y = x[:, :dim] * rng.random(dim)
794
+ mat = np.hstack((x, y))
795
+ mat = mat.astype(dtype)
796
+
797
+ nz = null_space(mat)
798
+ assert_equal(nz.shape[1], dim)
799
+
800
+ # Tolerances atol and rtol adjusted to pass np.float32
801
+ # Use non-sparse svd
802
+ u, s, vh = svd(mat)
803
+ # Singular values are 0:
804
+ assert_allclose(s[-dim:], 0, atol=1e-6, rtol=1e0)
805
+ # Smallest right singular vectors in null space:
806
+ assert_allclose(mat @ vh[-dim:, :].T, 0, atol=1e-6, rtol=1e0)
807
+
808
+ # Smallest singular values should be 0
809
+ sp_mat = csc_array(mat)
810
+ su, ss, svh = svds(sp_mat, k=dim, which='SM', solver=self.solver, rng=0)
811
+ # Smallest dim singular values are 0:
812
+ assert_allclose(ss, 0, atol=1e-5, rtol=1e0)
813
+ # Smallest singular vectors via svds in null space:
814
+ n, m = mat.shape
815
+ if n < m: # else the assert fails with some libraries unclear why
816
+ assert_allclose(sp_mat.transpose() @ su, 0, atol=1e-5, rtol=1e0)
817
+ assert_allclose(sp_mat @ svh.T, 0, atol=1e-5, rtol=1e0)
818
+
819
+ # --- Perform tests with each solver ---
820
+
821
+
822
+ class Test_SVDS_once:
823
+ @pytest.mark.parametrize("solver", ['ekki', object])
824
+ def test_svds_input_validation_solver(self, solver):
825
+ message = "solver must be one of"
826
+ with pytest.raises(ValueError, match=message):
827
+ svds(np.ones((3, 4)), k=2, solver=solver, rng=0)
828
+
829
+
830
+ class Test_SVDS_ARPACK(SVDSCommonTests):
831
+
832
+ def setup_method(self):
833
+ self.solver = 'arpack'
834
+
835
+ @pytest.mark.parametrize("ncv", list(range(-1, 8)) + [4.5, "5"])
836
+ def test_svds_input_validation_ncv_1(self, ncv):
837
+ rng = np.random.default_rng(0)
838
+ A = rng.random((6, 7))
839
+ k = 3
840
+ if ncv in {4, 5}:
841
+ u, s, vh = svds(A, k=k, ncv=ncv, solver=self.solver, rng=0)
842
+ # partial decomposition, so don't check that u@diag(s)@vh=A;
843
+ # do check that scipy.sparse.linalg.svds ~ scipy.linalg.svd
844
+ _check_svds(A, k, u, s, vh)
845
+ else:
846
+ message = ("`ncv` must be an integer satisfying")
847
+ with pytest.raises(ValueError, match=message):
848
+ svds(A, k=k, ncv=ncv, solver=self.solver, rng=0)
849
+
850
+ def test_svds_input_validation_ncv_2(self):
851
+ # I think the stack trace is reasonable when `ncv` can't be converted
852
+ # to an int.
853
+ message = "int() argument must be a"
854
+ with pytest.raises(TypeError, match=re.escape(message)):
855
+ svds(np.eye(10), ncv=[], solver=self.solver, rng=0)
856
+
857
+ message = "invalid literal for int()"
858
+ with pytest.raises(ValueError, match=message):
859
+ svds(np.eye(10), ncv="hi", solver=self.solver, rng=0)
860
+
861
+ # I can't see a robust relationship between `ncv` and relevant outputs
862
+ # (e.g. accuracy, time), so no test of the parameter.
863
+
864
+
865
+ class Test_SVDS_LOBPCG(SVDSCommonTests):
866
+
867
+ def setup_method(self):
868
+ self.solver = 'lobpcg'
869
+
870
+
871
+ class Test_SVDS_PROPACK(SVDSCommonTests):
872
+
873
+ def setup_method(self):
874
+ self.solver = 'propack'
875
+
876
+ def test_svd_LM_ones_matrix(self):
877
+ message = ("PROPACK does not return orthonormal singular vectors "
878
+ "associated with zero singular values.")
879
+ # There are some other issues with this matrix of all ones, e.g.
880
+ # `which='sm'` and `k=1` returns the largest singular value
881
+ pytest.xfail(message)
882
+
883
+ def test_svd_LM_zeros_matrix(self):
884
+ message = ("PROPACK does not return orthonormal singular vectors "
885
+ "associated with zero singular values.")
886
+ pytest.xfail(message)