scipy 1.16.2__cp313-cp313t-win_arm64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scipy/__config__.py +161 -0
- scipy/__init__.py +150 -0
- scipy/_cyutility.cp313t-win_arm64.lib +0 -0
- scipy/_cyutility.cp313t-win_arm64.pyd +0 -0
- scipy/_distributor_init.py +18 -0
- scipy/_lib/__init__.py +14 -0
- scipy/_lib/_array_api.py +931 -0
- scipy/_lib/_array_api_compat_vendor.py +9 -0
- scipy/_lib/_array_api_no_0d.py +103 -0
- scipy/_lib/_bunch.py +229 -0
- scipy/_lib/_ccallback.py +251 -0
- scipy/_lib/_ccallback_c.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_ccallback_c.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_disjoint_set.py +254 -0
- scipy/_lib/_docscrape.py +761 -0
- scipy/_lib/_elementwise_iterative_method.py +346 -0
- scipy/_lib/_fpumode.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_fpumode.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_gcutils.py +105 -0
- scipy/_lib/_pep440.py +487 -0
- scipy/_lib/_sparse.py +41 -0
- scipy/_lib/_test_ccallback.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_test_ccallback.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_call.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_call.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_def.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_def.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_testutils.py +373 -0
- scipy/_lib/_threadsafety.py +58 -0
- scipy/_lib/_tmpdirs.py +86 -0
- scipy/_lib/_uarray/LICENSE +29 -0
- scipy/_lib/_uarray/__init__.py +116 -0
- scipy/_lib/_uarray/_backend.py +707 -0
- scipy/_lib/_uarray/_uarray.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_uarray/_uarray.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_util.py +1283 -0
- scipy/_lib/array_api_compat/__init__.py +22 -0
- scipy/_lib/array_api_compat/_internal.py +59 -0
- scipy/_lib/array_api_compat/common/__init__.py +1 -0
- scipy/_lib/array_api_compat/common/_aliases.py +727 -0
- scipy/_lib/array_api_compat/common/_fft.py +213 -0
- scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
- scipy/_lib/array_api_compat/common/_linalg.py +232 -0
- scipy/_lib/array_api_compat/common/_typing.py +192 -0
- scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
- scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
- scipy/_lib/array_api_compat/cupy/_info.py +336 -0
- scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
- scipy/_lib/array_api_compat/cupy/fft.py +36 -0
- scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
- scipy/_lib/array_api_compat/dask/__init__.py +0 -0
- scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
- scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
- scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
- scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
- scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
- scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
- scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
- scipy/_lib/array_api_compat/numpy/_info.py +366 -0
- scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
- scipy/_lib/array_api_compat/numpy/fft.py +35 -0
- scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
- scipy/_lib/array_api_compat/torch/__init__.py +22 -0
- scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
- scipy/_lib/array_api_compat/torch/_info.py +369 -0
- scipy/_lib/array_api_compat/torch/_typing.py +3 -0
- scipy/_lib/array_api_compat/torch/fft.py +85 -0
- scipy/_lib/array_api_compat/torch/linalg.py +121 -0
- scipy/_lib/array_api_extra/__init__.py +38 -0
- scipy/_lib/array_api_extra/_delegation.py +171 -0
- scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_at.py +463 -0
- scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
- scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
- scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
- scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
- scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
- scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
- scipy/_lib/array_api_extra/testing.py +359 -0
- scipy/_lib/cobyqa/__init__.py +20 -0
- scipy/_lib/cobyqa/framework.py +1240 -0
- scipy/_lib/cobyqa/main.py +1506 -0
- scipy/_lib/cobyqa/models.py +1529 -0
- scipy/_lib/cobyqa/problem.py +1296 -0
- scipy/_lib/cobyqa/settings.py +132 -0
- scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
- scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
- scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
- scipy/_lib/cobyqa/utils/__init__.py +18 -0
- scipy/_lib/cobyqa/utils/exceptions.py +22 -0
- scipy/_lib/cobyqa/utils/math.py +77 -0
- scipy/_lib/cobyqa/utils/versions.py +67 -0
- scipy/_lib/decorator.py +399 -0
- scipy/_lib/deprecation.py +274 -0
- scipy/_lib/doccer.py +366 -0
- scipy/_lib/messagestream.cp313t-win_arm64.lib +0 -0
- scipy/_lib/messagestream.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/pyprima/__init__.py +212 -0
- scipy/_lib/pyprima/cobyla/__init__.py +0 -0
- scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
- scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
- scipy/_lib/pyprima/cobyla/geometry.py +226 -0
- scipy/_lib/pyprima/cobyla/initialize.py +215 -0
- scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
- scipy/_lib/pyprima/cobyla/update.py +289 -0
- scipy/_lib/pyprima/common/__init__.py +0 -0
- scipy/_lib/pyprima/common/_bounds.py +34 -0
- scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
- scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
- scipy/_lib/pyprima/common/_project.py +173 -0
- scipy/_lib/pyprima/common/checkbreak.py +93 -0
- scipy/_lib/pyprima/common/consts.py +47 -0
- scipy/_lib/pyprima/common/evaluate.py +99 -0
- scipy/_lib/pyprima/common/history.py +38 -0
- scipy/_lib/pyprima/common/infos.py +30 -0
- scipy/_lib/pyprima/common/linalg.py +435 -0
- scipy/_lib/pyprima/common/message.py +290 -0
- scipy/_lib/pyprima/common/powalg.py +131 -0
- scipy/_lib/pyprima/common/preproc.py +277 -0
- scipy/_lib/pyprima/common/present.py +5 -0
- scipy/_lib/pyprima/common/ratio.py +54 -0
- scipy/_lib/pyprima/common/redrho.py +47 -0
- scipy/_lib/pyprima/common/selectx.py +296 -0
- scipy/_lib/tests/__init__.py +0 -0
- scipy/_lib/tests/test__gcutils.py +110 -0
- scipy/_lib/tests/test__pep440.py +67 -0
- scipy/_lib/tests/test__testutils.py +32 -0
- scipy/_lib/tests/test__threadsafety.py +51 -0
- scipy/_lib/tests/test__util.py +641 -0
- scipy/_lib/tests/test_array_api.py +322 -0
- scipy/_lib/tests/test_bunch.py +169 -0
- scipy/_lib/tests/test_ccallback.py +196 -0
- scipy/_lib/tests/test_config.py +45 -0
- scipy/_lib/tests/test_deprecation.py +10 -0
- scipy/_lib/tests/test_doccer.py +143 -0
- scipy/_lib/tests/test_import_cycles.py +18 -0
- scipy/_lib/tests/test_public_api.py +482 -0
- scipy/_lib/tests/test_scipy_version.py +28 -0
- scipy/_lib/tests/test_tmpdirs.py +48 -0
- scipy/_lib/tests/test_warnings.py +137 -0
- scipy/_lib/uarray.py +31 -0
- scipy/cluster/__init__.py +31 -0
- scipy/cluster/_hierarchy.cp313t-win_arm64.lib +0 -0
- scipy/cluster/_hierarchy.cp313t-win_arm64.pyd +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp313t-win_arm64.lib +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp313t-win_arm64.pyd +0 -0
- scipy/cluster/_vq.cp313t-win_arm64.lib +0 -0
- scipy/cluster/_vq.cp313t-win_arm64.pyd +0 -0
- scipy/cluster/hierarchy.py +4348 -0
- scipy/cluster/tests/__init__.py +0 -0
- scipy/cluster/tests/hierarchy_test_data.py +145 -0
- scipy/cluster/tests/test_disjoint_set.py +202 -0
- scipy/cluster/tests/test_hierarchy.py +1238 -0
- scipy/cluster/tests/test_vq.py +434 -0
- scipy/cluster/vq.py +832 -0
- scipy/conftest.py +683 -0
- scipy/constants/__init__.py +358 -0
- scipy/constants/_codata.py +2266 -0
- scipy/constants/_constants.py +369 -0
- scipy/constants/codata.py +21 -0
- scipy/constants/constants.py +53 -0
- scipy/constants/tests/__init__.py +0 -0
- scipy/constants/tests/test_codata.py +78 -0
- scipy/constants/tests/test_constants.py +83 -0
- scipy/datasets/__init__.py +90 -0
- scipy/datasets/_download_all.py +71 -0
- scipy/datasets/_fetchers.py +225 -0
- scipy/datasets/_registry.py +26 -0
- scipy/datasets/_utils.py +81 -0
- scipy/datasets/tests/__init__.py +0 -0
- scipy/datasets/tests/test_data.py +128 -0
- scipy/differentiate/__init__.py +27 -0
- scipy/differentiate/_differentiate.py +1129 -0
- scipy/differentiate/tests/__init__.py +0 -0
- scipy/differentiate/tests/test_differentiate.py +694 -0
- scipy/fft/__init__.py +114 -0
- scipy/fft/_backend.py +196 -0
- scipy/fft/_basic.py +1650 -0
- scipy/fft/_basic_backend.py +197 -0
- scipy/fft/_debug_backends.py +22 -0
- scipy/fft/_fftlog.py +223 -0
- scipy/fft/_fftlog_backend.py +200 -0
- scipy/fft/_helper.py +348 -0
- scipy/fft/_pocketfft/LICENSE.md +25 -0
- scipy/fft/_pocketfft/__init__.py +9 -0
- scipy/fft/_pocketfft/basic.py +251 -0
- scipy/fft/_pocketfft/helper.py +249 -0
- scipy/fft/_pocketfft/pypocketfft.cp313t-win_arm64.lib +0 -0
- scipy/fft/_pocketfft/pypocketfft.cp313t-win_arm64.pyd +0 -0
- scipy/fft/_pocketfft/realtransforms.py +109 -0
- scipy/fft/_pocketfft/tests/__init__.py +0 -0
- scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
- scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
- scipy/fft/_realtransforms.py +706 -0
- scipy/fft/_realtransforms_backend.py +63 -0
- scipy/fft/tests/__init__.py +0 -0
- scipy/fft/tests/mock_backend.py +96 -0
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- scipy/fft/tests/test_fftlog.py +215 -0
- scipy/fft/tests/test_helper.py +558 -0
- scipy/fft/tests/test_multithreading.py +84 -0
- scipy/fft/tests/test_real_transforms.py +247 -0
- scipy/fftpack/__init__.py +103 -0
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- scipy/fftpack/_realtransforms.py +598 -0
- scipy/fftpack/basic.py +20 -0
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- scipy/fftpack/pseudo_diffs.py +22 -0
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- scipy/fftpack/tests/test_import.py +33 -0
- scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
- scipy/fftpack/tests/test_real_transforms.py +836 -0
- scipy/integrate/__init__.py +122 -0
- scipy/integrate/_bvp.py +1160 -0
- scipy/integrate/_cubature.py +729 -0
- scipy/integrate/_dop.cp313t-win_arm64.lib +0 -0
- scipy/integrate/_dop.cp313t-win_arm64.pyd +0 -0
- scipy/integrate/_ivp/__init__.py +8 -0
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- scipy/integrate/_ivp/dop853_coefficients.py +193 -0
- scipy/integrate/_ivp/ivp.py +755 -0
- scipy/integrate/_ivp/lsoda.py +224 -0
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- scipy/integrate/_ivp/rk.py +601 -0
- scipy/integrate/_ivp/tests/__init__.py +0 -0
- scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
- scipy/integrate/_ivp/tests/test_rk.py +37 -0
- scipy/integrate/_lebedev.py +5450 -0
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- scipy/integrate/_ode.py +1395 -0
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- scipy/integrate/_rules/__init__.py +12 -0
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- scipy/integrate/_rules/_gauss_kronrod.py +202 -0
- scipy/integrate/_rules/_gauss_legendre.py +62 -0
- scipy/integrate/_rules/_genz_malik.py +210 -0
- scipy/integrate/_tanhsinh.py +1385 -0
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- scipy/integrate/tests/test_tanhsinh.py +1171 -0
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"""Test functions for the sparse.linalg.norm module
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"""
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import pytest
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import numpy as np
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from numpy.linalg import norm as npnorm
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from numpy.testing import assert_allclose, assert_equal
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from pytest import raises as assert_raises
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import scipy.sparse
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from scipy.sparse.linalg import norm as spnorm
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# https://github.com/scipy/scipy/issues/16031
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# https://github.com/scipy/scipy/issues/21690
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def test_sparray_norm():
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row = np.array([0, 0, 1, 1])
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col = np.array([0, 1, 2, 3])
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data = np.array([4, 5, 7, 9])
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test_arr = scipy.sparse.coo_array((data, (row, col)), shape=(2, 4))
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test_mat = scipy.sparse.coo_matrix((data, (row, col)), shape=(2, 4))
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for ord in (1, np.inf, None):
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for ax in [0, 1, None, (0, 1), (1, 0)]:
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for A in (test_arr, test_mat):
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expected = npnorm(A.toarray(), ord=ord, axis=ax)
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actual = spnorm(A, ord=ord, axis=ax)
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assert hasattr(actual, "dtype")
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assert_equal(actual, expected)
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# test 1d array and 1d-like (column) matrix
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test_arr_1d = scipy.sparse.coo_array((data, (col,)), shape=(4,))
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test_mat_col = scipy.sparse.coo_matrix((data, (col, [0, 0, 0, 0])), shape=(4, 1))
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for ord in (1, np.inf, None):
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for ax in [0, None]:
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for A in (test_arr_1d, test_mat_col):
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expected = npnorm(A.toarray(), ord=ord, axis=ax)
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assert_equal(spnorm(A, ord=ord, axis=ax), expected)
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class TestNorm:
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def setup_method(self):
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a = np.arange(9) - 4
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b = a.reshape((3, 3))
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self.b = scipy.sparse.csr_array(b)
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@pytest.mark.thread_unsafe
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def test_matrix_norm(self):
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# Frobenius norm is the default
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assert_allclose(spnorm(self.b), 7.745966692414834)
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assert_allclose(spnorm(self.b, 'fro'), 7.745966692414834)
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assert_allclose(spnorm(self.b, np.inf), 9)
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assert_allclose(spnorm(self.b, -np.inf), 2)
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assert_allclose(spnorm(self.b, 1), 7)
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assert_allclose(spnorm(self.b, -1), 6)
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# Only floating or complex floating dtype supported by svds.
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with pytest.warns(UserWarning, match="The problem size"):
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assert_allclose(spnorm(self.b.astype(np.float64), 2),
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7.348469228349534)
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# _multi_svd_norm is not implemented for sparse array
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assert_raises(NotImplementedError, spnorm, self.b, -2)
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def test_matrix_norm_axis(self):
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for m, axis in ((self.b, None), (self.b, (0, 1)), (self.b.T, (1, 0))):
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assert_allclose(spnorm(m, axis=axis), 7.745966692414834)
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assert_allclose(spnorm(m, 'fro', axis=axis), 7.745966692414834)
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assert_allclose(spnorm(m, np.inf, axis=axis), 9)
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assert_allclose(spnorm(m, -np.inf, axis=axis), 2)
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assert_allclose(spnorm(m, 1, axis=axis), 7)
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assert_allclose(spnorm(m, -1, axis=axis), 6)
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def test_vector_norm(self):
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v = [4.5825756949558398, 4.2426406871192848, 4.5825756949558398]
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for m, a in (self.b, 0), (self.b.T, 1):
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for axis in a, (a, ), a-2, (a-2, ):
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assert_allclose(spnorm(m, 1, axis=axis), [7, 6, 7])
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assert_allclose(spnorm(m, np.inf, axis=axis), [4, 3, 4])
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assert_allclose(spnorm(m, axis=axis), v)
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assert_allclose(spnorm(m, ord=2, axis=axis), v)
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assert_allclose(spnorm(m, ord=None, axis=axis), v)
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def test_norm_exceptions(self):
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m = self.b
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assert_raises(TypeError, spnorm, m, None, 1.5)
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assert_raises(TypeError, spnorm, m, None, [2])
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assert_raises(ValueError, spnorm, m, None, ())
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assert_raises(ValueError, spnorm, m, None, (0, 1, 2))
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assert_raises(ValueError, spnorm, m, None, (0, 0))
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assert_raises(ValueError, spnorm, m, None, (0, 2))
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assert_raises(ValueError, spnorm, m, None, (-3, 0))
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assert_raises(ValueError, spnorm, m, None, 2)
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assert_raises(ValueError, spnorm, m, None, -3)
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assert_raises(ValueError, spnorm, m, 'plate_of_shrimp', 0)
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assert_raises(ValueError, spnorm, m, 'plate_of_shrimp', (0, 1))
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class TestVsNumpyNorm:
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_sparse_types = (
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scipy.sparse.bsr_array,
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scipy.sparse.coo_array,
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scipy.sparse.csc_array,
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scipy.sparse.csr_array,
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scipy.sparse.dia_array,
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scipy.sparse.dok_array,
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scipy.sparse.lil_array,
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)
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_test_matrices = (
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(np.arange(9) - 4).reshape((3, 3)),
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[
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[1, 2, 3],
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[-1, 1, 4]],
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[
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[1, 0, 3],
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[-1, 1, 4j]],
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)
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def test_sparse_matrix_norms(self):
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for sparse_type in self._sparse_types:
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for M in self._test_matrices:
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S = sparse_type(M)
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assert_allclose(spnorm(S), npnorm(M))
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assert_allclose(spnorm(S, 'fro'), npnorm(M, 'fro'))
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assert_allclose(spnorm(S, np.inf), npnorm(M, np.inf))
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assert_allclose(spnorm(S, -np.inf), npnorm(M, -np.inf))
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assert_allclose(spnorm(S, 1), npnorm(M, 1))
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assert_allclose(spnorm(S, -1), npnorm(M, -1))
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def test_sparse_matrix_norms_with_axis(self):
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for sparse_type in self._sparse_types:
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for M in self._test_matrices:
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S = sparse_type(M)
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for axis in None, (0, 1), (1, 0):
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assert_allclose(spnorm(S, axis=axis), npnorm(M, axis=axis))
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for ord in 'fro', np.inf, -np.inf, 1, -1:
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assert_allclose(spnorm(S, ord, axis=axis),
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npnorm(M, ord, axis=axis))
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# Some numpy matrix norms are allergic to negative axes.
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for axis in (-2, -1), (-1, -2), (1, -2):
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assert_allclose(spnorm(S, axis=axis), npnorm(M, axis=axis))
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assert_allclose(spnorm(S, 'f', axis=axis),
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npnorm(M, 'f', axis=axis))
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assert_allclose(spnorm(S, 'fro', axis=axis),
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npnorm(M, 'fro', axis=axis))
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def test_sparse_vector_norms(self):
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for sparse_type in self._sparse_types:
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for M in self._test_matrices:
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S = sparse_type(M)
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for axis in (0, 1, -1, -2, (0, ), (1, ), (-1, ), (-2, )):
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assert_allclose(spnorm(S, axis=axis), npnorm(M, axis=axis))
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for ord in None, 2, np.inf, -np.inf, 1, 0.5, 0.42:
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assert_allclose(spnorm(S, ord, axis=axis),
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npnorm(M, ord, axis=axis))
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"""Test functions for the sparse.linalg._onenormest module
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"""
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import numpy as np
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from numpy.testing import assert_allclose, assert_equal, assert_
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import pytest
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import scipy.linalg
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import scipy.sparse.linalg
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from scipy.sparse.linalg._onenormest import _onenormest_core, _algorithm_2_2
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class MatrixProductOperator(scipy.sparse.linalg.LinearOperator):
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"""
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This is purely for onenormest testing.
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"""
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def __init__(self, A, B):
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if A.ndim != 2 or B.ndim != 2:
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raise ValueError('expected ndarrays representing matrices')
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if A.shape[1] != B.shape[0]:
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raise ValueError('incompatible shapes')
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self.A = A
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self.B = B
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self.ndim = 2
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self.shape = (A.shape[0], B.shape[1])
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def _matvec(self, x):
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return np.dot(self.A, np.dot(self.B, x))
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def _rmatvec(self, x):
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return np.dot(np.dot(x, self.A), self.B)
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def _matmat(self, X):
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return np.dot(self.A, np.dot(self.B, X))
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@property
|
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def T(self):
|
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return MatrixProductOperator(self.B.T, self.A.T)
|
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+
|
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|
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class TestOnenormest:
|
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|
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@pytest.mark.xslow
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def test_onenormest_table_3_t_2(self):
|
45
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# This will take multiple seconds if your computer is slow like mine.
|
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+
# It is stochastic, so the tolerance could be too strict.
|
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np.random.seed(1234)
|
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t = 2
|
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n = 100
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itmax = 5
|
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nsamples = 5000
|
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observed = []
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expected = []
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nmult_list = []
|
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nresample_list = []
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for i in range(nsamples):
|
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A = scipy.linalg.inv(np.random.randn(n, n))
|
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est, v, w, nmults, nresamples = _onenormest_core(A, A.T, t, itmax)
|
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observed.append(est)
|
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expected.append(scipy.linalg.norm(A, 1))
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nmult_list.append(nmults)
|
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nresample_list.append(nresamples)
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observed = np.array(observed, dtype=float)
|
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expected = np.array(expected, dtype=float)
|
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relative_errors = np.abs(observed - expected) / expected
|
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+
|
67
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# check the mean underestimation ratio
|
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underestimation_ratio = observed / expected
|
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assert_(0.99 < np.mean(underestimation_ratio) < 1.0)
|
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+
|
71
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+
# check the max and mean required column resamples
|
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assert_equal(np.max(nresample_list), 2)
|
73
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assert_(0.05 < np.mean(nresample_list) < 0.2)
|
74
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+
|
75
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+
# check the proportion of norms computed exactly correctly
|
76
|
+
nexact = np.count_nonzero(relative_errors < 1e-14)
|
77
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+
proportion_exact = nexact / float(nsamples)
|
78
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+
assert_(0.9 < proportion_exact < 0.95)
|
79
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+
|
80
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+
# check the average number of matrix*vector multiplications
|
81
|
+
assert_(3.5 < np.mean(nmult_list) < 4.5)
|
82
|
+
|
83
|
+
@pytest.mark.xslow
|
84
|
+
def test_onenormest_table_4_t_7(self):
|
85
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+
# This will take multiple seconds if your computer is slow like mine.
|
86
|
+
# It is stochastic, so the tolerance could be too strict.
|
87
|
+
np.random.seed(1234)
|
88
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+
t = 7
|
89
|
+
n = 100
|
90
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+
itmax = 5
|
91
|
+
nsamples = 5000
|
92
|
+
observed = []
|
93
|
+
expected = []
|
94
|
+
nmult_list = []
|
95
|
+
nresample_list = []
|
96
|
+
for i in range(nsamples):
|
97
|
+
A = np.random.randint(-1, 2, size=(n, n))
|
98
|
+
est, v, w, nmults, nresamples = _onenormest_core(A, A.T, t, itmax)
|
99
|
+
observed.append(est)
|
100
|
+
expected.append(scipy.linalg.norm(A, 1))
|
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+
nmult_list.append(nmults)
|
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|
+
nresample_list.append(nresamples)
|
103
|
+
observed = np.array(observed, dtype=float)
|
104
|
+
expected = np.array(expected, dtype=float)
|
105
|
+
relative_errors = np.abs(observed - expected) / expected
|
106
|
+
|
107
|
+
# check the mean underestimation ratio
|
108
|
+
underestimation_ratio = observed / expected
|
109
|
+
assert_(0.90 < np.mean(underestimation_ratio) < 0.99)
|
110
|
+
|
111
|
+
# check the required column resamples
|
112
|
+
assert_equal(np.max(nresample_list), 0)
|
113
|
+
|
114
|
+
# check the proportion of norms computed exactly correctly
|
115
|
+
nexact = np.count_nonzero(relative_errors < 1e-14)
|
116
|
+
proportion_exact = nexact / float(nsamples)
|
117
|
+
assert_(0.15 < proportion_exact < 0.25)
|
118
|
+
|
119
|
+
# check the average number of matrix*vector multiplications
|
120
|
+
assert_(3.5 < np.mean(nmult_list) < 4.5)
|
121
|
+
|
122
|
+
def test_onenormest_table_5_t_1(self):
|
123
|
+
# "note that there is no randomness and hence only one estimate for t=1"
|
124
|
+
t = 1
|
125
|
+
n = 100
|
126
|
+
itmax = 5
|
127
|
+
alpha = 1 - 1e-6
|
128
|
+
A = -scipy.linalg.inv(np.identity(n) + alpha*np.eye(n, k=1))
|
129
|
+
first_col = np.array([1] + [0]*(n-1))
|
130
|
+
first_row = np.array([(-alpha)**i for i in range(n)])
|
131
|
+
B = -scipy.linalg.toeplitz(first_col, first_row)
|
132
|
+
assert_allclose(A, B)
|
133
|
+
est, v, w, nmults, nresamples = _onenormest_core(B, B.T, t, itmax)
|
134
|
+
exact_value = scipy.linalg.norm(B, 1)
|
135
|
+
underest_ratio = est / exact_value
|
136
|
+
assert_allclose(underest_ratio, 0.05, rtol=1e-4)
|
137
|
+
assert_equal(nmults, 11)
|
138
|
+
assert_equal(nresamples, 0)
|
139
|
+
# check the non-underscored version of onenormest
|
140
|
+
est_plain = scipy.sparse.linalg.onenormest(B, t=t, itmax=itmax)
|
141
|
+
assert_allclose(est, est_plain)
|
142
|
+
|
143
|
+
@pytest.mark.xslow
|
144
|
+
def test_onenormest_table_6_t_2(self):
|
145
|
+
#TODO this test seems to give estimates that match the table,
|
146
|
+
#TODO even though no attempt has been made to deal with
|
147
|
+
#TODO complex numbers in the one-norm estimation.
|
148
|
+
# This will take multiple seconds if your computer is slow like mine.
|
149
|
+
# It is stochastic, so the tolerance could be too strict.
|
150
|
+
np.random.seed(1234)
|
151
|
+
t = 2
|
152
|
+
n = 100
|
153
|
+
itmax = 5
|
154
|
+
nsamples = 5000
|
155
|
+
observed = []
|
156
|
+
expected = []
|
157
|
+
nmult_list = []
|
158
|
+
nresample_list = []
|
159
|
+
for i in range(nsamples):
|
160
|
+
A_inv = np.random.rand(n, n) + 1j * np.random.rand(n, n)
|
161
|
+
A = scipy.linalg.inv(A_inv)
|
162
|
+
est, v, w, nmults, nresamples = _onenormest_core(A, A.T, t, itmax)
|
163
|
+
observed.append(est)
|
164
|
+
expected.append(scipy.linalg.norm(A, 1))
|
165
|
+
nmult_list.append(nmults)
|
166
|
+
nresample_list.append(nresamples)
|
167
|
+
observed = np.array(observed, dtype=float)
|
168
|
+
expected = np.array(expected, dtype=float)
|
169
|
+
relative_errors = np.abs(observed - expected) / expected
|
170
|
+
|
171
|
+
# check the mean underestimation ratio
|
172
|
+
underestimation_ratio = observed / expected
|
173
|
+
underestimation_ratio_mean = np.mean(underestimation_ratio)
|
174
|
+
assert_(0.90 < underestimation_ratio_mean < 0.99)
|
175
|
+
|
176
|
+
# check the required column resamples
|
177
|
+
max_nresamples = np.max(nresample_list)
|
178
|
+
assert_equal(max_nresamples, 0)
|
179
|
+
|
180
|
+
# check the proportion of norms computed exactly correctly
|
181
|
+
nexact = np.count_nonzero(relative_errors < 1e-14)
|
182
|
+
proportion_exact = nexact / float(nsamples)
|
183
|
+
assert_(0.7 < proportion_exact < 0.8)
|
184
|
+
|
185
|
+
# check the average number of matrix*vector multiplications
|
186
|
+
mean_nmult = np.mean(nmult_list)
|
187
|
+
assert_(4 < mean_nmult < 5)
|
188
|
+
|
189
|
+
def _help_product_norm_slow(self, A, B):
|
190
|
+
# for profiling
|
191
|
+
C = np.dot(A, B)
|
192
|
+
return scipy.linalg.norm(C, 1)
|
193
|
+
|
194
|
+
def _help_product_norm_fast(self, A, B):
|
195
|
+
# for profiling
|
196
|
+
t = 2
|
197
|
+
itmax = 5
|
198
|
+
D = MatrixProductOperator(A, B)
|
199
|
+
est, v, w, nmults, nresamples = _onenormest_core(D, D.T, t, itmax)
|
200
|
+
return est
|
201
|
+
|
202
|
+
@pytest.mark.slow
|
203
|
+
def test_onenormest_linear_operator(self):
|
204
|
+
# Define a matrix through its product A B.
|
205
|
+
# Depending on the shapes of A and B,
|
206
|
+
# it could be easy to multiply this product by a small matrix,
|
207
|
+
# but it could be annoying to look at all of
|
208
|
+
# the entries of the product explicitly.
|
209
|
+
np.random.seed(1234)
|
210
|
+
n = 6000
|
211
|
+
k = 3
|
212
|
+
A = np.random.randn(n, k)
|
213
|
+
B = np.random.randn(k, n)
|
214
|
+
fast_estimate = self._help_product_norm_fast(A, B)
|
215
|
+
exact_value = self._help_product_norm_slow(A, B)
|
216
|
+
assert_(fast_estimate <= exact_value <= 3*fast_estimate,
|
217
|
+
f'fast: {fast_estimate:g}\nexact:{exact_value:g}')
|
218
|
+
|
219
|
+
def test_returns(self):
|
220
|
+
np.random.seed(1234)
|
221
|
+
A = scipy.sparse.rand(50, 50, 0.1)
|
222
|
+
|
223
|
+
s0 = scipy.linalg.norm(A.toarray(), 1)
|
224
|
+
s1, v = scipy.sparse.linalg.onenormest(A, compute_v=True)
|
225
|
+
s2, w = scipy.sparse.linalg.onenormest(A, compute_w=True)
|
226
|
+
s3, v2, w2 = scipy.sparse.linalg.onenormest(A, compute_w=True, compute_v=True)
|
227
|
+
|
228
|
+
assert_allclose(s1, s0, rtol=1e-9)
|
229
|
+
assert_allclose(np.linalg.norm(A.dot(v), 1), s0*np.linalg.norm(v, 1), rtol=1e-9)
|
230
|
+
assert_allclose(A.dot(v), w, rtol=1e-9)
|
231
|
+
|
232
|
+
|
233
|
+
class TestAlgorithm_2_2:
|
234
|
+
|
235
|
+
@pytest.mark.thread_unsafe
|
236
|
+
def test_randn_inv(self):
|
237
|
+
rng = np.random.RandomState(1234)
|
238
|
+
n = 20
|
239
|
+
nsamples = 100
|
240
|
+
for i in range(nsamples):
|
241
|
+
|
242
|
+
# Choose integer t uniformly between 1 and 3 inclusive.
|
243
|
+
t = rng.randint(1, 4)
|
244
|
+
|
245
|
+
# Choose n uniformly between 10 and 40 inclusive.
|
246
|
+
n = rng.randint(10, 41)
|
247
|
+
|
248
|
+
# Sample the inverse of a matrix with random normal entries.
|
249
|
+
A = scipy.linalg.inv(rng.randn(n, n))
|
250
|
+
|
251
|
+
# Compute the 1-norm bounds.
|
252
|
+
g, ind = _algorithm_2_2(A, A.T, t)
|
@@ -0,0 +1,165 @@
|
|
1
|
+
import os
|
2
|
+
import pytest
|
3
|
+
|
4
|
+
import numpy as np
|
5
|
+
from numpy.testing import assert_allclose
|
6
|
+
from pytest import raises as assert_raises
|
7
|
+
from scipy.sparse.linalg._svdp import _svdp
|
8
|
+
from scipy.sparse import csr_array, csc_array
|
9
|
+
|
10
|
+
|
11
|
+
# dtype_flavour to tolerance
|
12
|
+
TOLS = {
|
13
|
+
np.float32: 1e-4,
|
14
|
+
np.float64: 1e-8,
|
15
|
+
np.complex64: 1e-4,
|
16
|
+
np.complex128: 1e-8,
|
17
|
+
}
|
18
|
+
|
19
|
+
|
20
|
+
def is_complex_type(dtype):
|
21
|
+
return np.dtype(dtype).kind == "c"
|
22
|
+
|
23
|
+
|
24
|
+
_dtypes = []
|
25
|
+
for dtype_flavour in TOLS.keys():
|
26
|
+
marks = []
|
27
|
+
if is_complex_type(dtype_flavour):
|
28
|
+
marks = [pytest.mark.slow]
|
29
|
+
_dtypes.append(pytest.param(dtype_flavour, marks=marks,
|
30
|
+
id=dtype_flavour.__name__))
|
31
|
+
_dtypes = tuple(_dtypes) # type: ignore[assignment]
|
32
|
+
|
33
|
+
|
34
|
+
def generate_matrix(constructor, n, m, f,
|
35
|
+
dtype=float, rseed=0, **kwargs):
|
36
|
+
"""Generate a random sparse array"""
|
37
|
+
rng = np.random.RandomState(rseed)
|
38
|
+
if is_complex_type(dtype):
|
39
|
+
M = (- 5 + 10 * rng.rand(n, m)
|
40
|
+
- 5j + 10j * rng.rand(n, m)).astype(dtype)
|
41
|
+
else:
|
42
|
+
M = (-5 + 10 * rng.rand(n, m)).astype(dtype)
|
43
|
+
M[M.real > 10 * f - 5] = 0
|
44
|
+
return constructor(M, **kwargs)
|
45
|
+
|
46
|
+
|
47
|
+
def assert_orthogonal(u1, u2, rtol, atol):
|
48
|
+
"""Check that the first k rows of u1 and u2 are orthogonal"""
|
49
|
+
A = abs(np.dot(u1.conj().T, u2))
|
50
|
+
assert_allclose(A, np.eye(u1.shape[1], u2.shape[1]), rtol=rtol, atol=atol)
|
51
|
+
|
52
|
+
|
53
|
+
def check_svdp(n, m, constructor, dtype, k, irl_mode, which, f=0.8):
|
54
|
+
tol = TOLS[dtype]
|
55
|
+
|
56
|
+
M = generate_matrix(np.asarray, n, m, f, dtype)
|
57
|
+
Msp = constructor(M)
|
58
|
+
|
59
|
+
u1, sigma1, vt1 = np.linalg.svd(M, full_matrices=False)
|
60
|
+
u2, sigma2, vt2, _ = _svdp(Msp, k=k, which=which, irl_mode=irl_mode,
|
61
|
+
tol=tol, rng=np.random.default_rng(0))
|
62
|
+
|
63
|
+
# check the which
|
64
|
+
if which.upper() == 'SM':
|
65
|
+
u1 = np.roll(u1, k, 1)
|
66
|
+
vt1 = np.roll(vt1, k, 0)
|
67
|
+
sigma1 = np.roll(sigma1, k)
|
68
|
+
|
69
|
+
# check that singular values agree
|
70
|
+
assert_allclose(sigma1[:k], sigma2, rtol=tol, atol=tol)
|
71
|
+
|
72
|
+
# check that singular vectors are orthogonal
|
73
|
+
assert_orthogonal(u1, u2, rtol=tol, atol=tol)
|
74
|
+
assert_orthogonal(vt1.T, vt2.T, rtol=tol, atol=tol)
|
75
|
+
|
76
|
+
|
77
|
+
@pytest.mark.parametrize('ctor', (np.array, csr_array, csc_array))
|
78
|
+
@pytest.mark.parametrize('dtype', _dtypes)
|
79
|
+
@pytest.mark.parametrize('irl', (True, False))
|
80
|
+
@pytest.mark.parametrize('which', ('LM', 'SM'))
|
81
|
+
def test_svdp(ctor, dtype, irl, which):
|
82
|
+
np.random.seed(0)
|
83
|
+
n, m, k = 10, 20, 3
|
84
|
+
if which == 'SM' and not irl:
|
85
|
+
message = "`which`='SM' requires irl_mode=True"
|
86
|
+
with assert_raises(ValueError, match=message):
|
87
|
+
check_svdp(n, m, ctor, dtype, k, irl, which)
|
88
|
+
else:
|
89
|
+
check_svdp(n, m, ctor, dtype, k, irl, which)
|
90
|
+
|
91
|
+
|
92
|
+
@pytest.mark.xslow
|
93
|
+
@pytest.mark.parametrize('dtype', _dtypes)
|
94
|
+
@pytest.mark.parametrize('irl', (False, True))
|
95
|
+
def test_examples(dtype, irl):
|
96
|
+
# Note: atol for complex64 bumped from 1e-4 to 1e-3 due to test failures
|
97
|
+
# with BLIS, Netlib, and MKL+AVX512 - see
|
98
|
+
# https://github.com/conda-forge/scipy-feedstock/pull/198#issuecomment-999180432
|
99
|
+
atol = {
|
100
|
+
np.float32: 1.3e-4,
|
101
|
+
np.float64: 1e-9,
|
102
|
+
np.complex64: 1e-3,
|
103
|
+
np.complex128: 1e-9,
|
104
|
+
}[dtype]
|
105
|
+
|
106
|
+
path_prefix = os.path.dirname(__file__)
|
107
|
+
# Test matrices from `illc1850.coord` and `mhd1280b.cua` distributed with
|
108
|
+
# PROPACK 2.1: http://sun.stanford.edu/~rmunk/PROPACK/
|
109
|
+
relative_path = "propack_test_data.npz"
|
110
|
+
filename = os.path.join(path_prefix, relative_path)
|
111
|
+
with np.load(filename, allow_pickle=True) as data:
|
112
|
+
if is_complex_type(dtype):
|
113
|
+
A = data['A_complex'].item().astype(dtype)
|
114
|
+
else:
|
115
|
+
A = data['A_real'].item().astype(dtype)
|
116
|
+
|
117
|
+
k = 200
|
118
|
+
u, s, vh, _ = _svdp(A, k, irl_mode=irl, rng=np.random.default_rng(0))
|
119
|
+
|
120
|
+
# complex example matrix has many repeated singular values, so check only
|
121
|
+
# beginning non-repeated singular vectors to avoid permutations
|
122
|
+
sv_check = 27 if is_complex_type(dtype) else k
|
123
|
+
u = u[:, :sv_check]
|
124
|
+
vh = vh[:sv_check, :]
|
125
|
+
s = s[:sv_check]
|
126
|
+
|
127
|
+
# Check orthogonality of singular vectors
|
128
|
+
assert_allclose(np.eye(u.shape[1]), u.conj().T @ u, atol=atol)
|
129
|
+
assert_allclose(np.eye(vh.shape[0]), vh @ vh.conj().T, atol=atol)
|
130
|
+
|
131
|
+
# Ensure the norm of the difference between the np.linalg.svd and
|
132
|
+
# PROPACK reconstructed matrices is small
|
133
|
+
u3, s3, vh3 = np.linalg.svd(A.todense())
|
134
|
+
u3 = u3[:, :sv_check]
|
135
|
+
s3 = s3[:sv_check]
|
136
|
+
vh3 = vh3[:sv_check, :]
|
137
|
+
A3 = u3 @ np.diag(s3) @ vh3
|
138
|
+
recon = u @ np.diag(s) @ vh
|
139
|
+
assert_allclose(np.linalg.norm(A3 - recon), 0, atol=atol)
|
140
|
+
|
141
|
+
|
142
|
+
@pytest.mark.parametrize('shifts', (None, -10, 0, 1, 10, 70))
|
143
|
+
@pytest.mark.parametrize('dtype', _dtypes[:2])
|
144
|
+
def test_shifts(shifts, dtype):
|
145
|
+
rng = np.random.default_rng(0)
|
146
|
+
n, k = 70, 10
|
147
|
+
A = rng.random((n, n))
|
148
|
+
if shifts is not None and ((shifts < 0) or (k > min(n-1-shifts, n))):
|
149
|
+
with pytest.raises(ValueError):
|
150
|
+
_svdp(A, k, shifts=shifts, kmax=5*k, irl_mode=True, rng=rng)
|
151
|
+
else:
|
152
|
+
_svdp(A, k, shifts=shifts, kmax=5*k, irl_mode=True, rng=rng)
|
153
|
+
|
154
|
+
|
155
|
+
@pytest.mark.slow
|
156
|
+
@pytest.mark.xfail()
|
157
|
+
def test_shifts_accuracy():
|
158
|
+
rng = np.random.default_rng(0)
|
159
|
+
n, k = 70, 10
|
160
|
+
A = rng.random((n, n)).astype(np.float64)
|
161
|
+
u1, s1, vt1, _ = _svdp(A, k, shifts=None, which='SM', irl_mode=True, rng=rng)
|
162
|
+
u2, s2, vt2, _ = _svdp(A, k, shifts=32, which='SM', irl_mode=True, rng=rng)
|
163
|
+
# shifts <= 32 doesn't agree with shifts > 32
|
164
|
+
# Does agree when which='LM' instead of 'SM'
|
165
|
+
assert_allclose(s1, s2)
|