scipy 1.16.2__cp313-cp313t-win_arm64.whl
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- scipy/__config__.py +161 -0
- scipy/__init__.py +150 -0
- scipy/_cyutility.cp313t-win_arm64.lib +0 -0
- scipy/_cyutility.cp313t-win_arm64.pyd +0 -0
- scipy/_distributor_init.py +18 -0
- scipy/_lib/__init__.py +14 -0
- scipy/_lib/_array_api.py +931 -0
- scipy/_lib/_array_api_compat_vendor.py +9 -0
- scipy/_lib/_array_api_no_0d.py +103 -0
- scipy/_lib/_bunch.py +229 -0
- scipy/_lib/_ccallback.py +251 -0
- scipy/_lib/_ccallback_c.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_ccallback_c.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_disjoint_set.py +254 -0
- scipy/_lib/_docscrape.py +761 -0
- scipy/_lib/_elementwise_iterative_method.py +346 -0
- scipy/_lib/_fpumode.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_fpumode.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_gcutils.py +105 -0
- scipy/_lib/_pep440.py +487 -0
- scipy/_lib/_sparse.py +41 -0
- scipy/_lib/_test_ccallback.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_test_ccallback.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_call.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_call.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_test_deprecation_def.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_test_deprecation_def.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_testutils.py +373 -0
- scipy/_lib/_threadsafety.py +58 -0
- scipy/_lib/_tmpdirs.py +86 -0
- scipy/_lib/_uarray/LICENSE +29 -0
- scipy/_lib/_uarray/__init__.py +116 -0
- scipy/_lib/_uarray/_backend.py +707 -0
- scipy/_lib/_uarray/_uarray.cp313t-win_arm64.lib +0 -0
- scipy/_lib/_uarray/_uarray.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/_util.py +1283 -0
- scipy/_lib/array_api_compat/__init__.py +22 -0
- scipy/_lib/array_api_compat/_internal.py +59 -0
- scipy/_lib/array_api_compat/common/__init__.py +1 -0
- scipy/_lib/array_api_compat/common/_aliases.py +727 -0
- scipy/_lib/array_api_compat/common/_fft.py +213 -0
- scipy/_lib/array_api_compat/common/_helpers.py +1058 -0
- scipy/_lib/array_api_compat/common/_linalg.py +232 -0
- scipy/_lib/array_api_compat/common/_typing.py +192 -0
- scipy/_lib/array_api_compat/cupy/__init__.py +13 -0
- scipy/_lib/array_api_compat/cupy/_aliases.py +156 -0
- scipy/_lib/array_api_compat/cupy/_info.py +336 -0
- scipy/_lib/array_api_compat/cupy/_typing.py +31 -0
- scipy/_lib/array_api_compat/cupy/fft.py +36 -0
- scipy/_lib/array_api_compat/cupy/linalg.py +49 -0
- scipy/_lib/array_api_compat/dask/__init__.py +0 -0
- scipy/_lib/array_api_compat/dask/array/__init__.py +12 -0
- scipy/_lib/array_api_compat/dask/array/_aliases.py +376 -0
- scipy/_lib/array_api_compat/dask/array/_info.py +416 -0
- scipy/_lib/array_api_compat/dask/array/fft.py +21 -0
- scipy/_lib/array_api_compat/dask/array/linalg.py +72 -0
- scipy/_lib/array_api_compat/numpy/__init__.py +28 -0
- scipy/_lib/array_api_compat/numpy/_aliases.py +190 -0
- scipy/_lib/array_api_compat/numpy/_info.py +366 -0
- scipy/_lib/array_api_compat/numpy/_typing.py +30 -0
- scipy/_lib/array_api_compat/numpy/fft.py +35 -0
- scipy/_lib/array_api_compat/numpy/linalg.py +143 -0
- scipy/_lib/array_api_compat/torch/__init__.py +22 -0
- scipy/_lib/array_api_compat/torch/_aliases.py +855 -0
- scipy/_lib/array_api_compat/torch/_info.py +369 -0
- scipy/_lib/array_api_compat/torch/_typing.py +3 -0
- scipy/_lib/array_api_compat/torch/fft.py +85 -0
- scipy/_lib/array_api_compat/torch/linalg.py +121 -0
- scipy/_lib/array_api_extra/__init__.py +38 -0
- scipy/_lib/array_api_extra/_delegation.py +171 -0
- scipy/_lib/array_api_extra/_lib/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_at.py +463 -0
- scipy/_lib/array_api_extra/_lib/_backends.py +46 -0
- scipy/_lib/array_api_extra/_lib/_funcs.py +937 -0
- scipy/_lib/array_api_extra/_lib/_lazy.py +357 -0
- scipy/_lib/array_api_extra/_lib/_testing.py +278 -0
- scipy/_lib/array_api_extra/_lib/_utils/__init__.py +1 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.py +74 -0
- scipy/_lib/array_api_extra/_lib/_utils/_compat.pyi +45 -0
- scipy/_lib/array_api_extra/_lib/_utils/_helpers.py +559 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.py +10 -0
- scipy/_lib/array_api_extra/_lib/_utils/_typing.pyi +105 -0
- scipy/_lib/array_api_extra/testing.py +359 -0
- scipy/_lib/cobyqa/__init__.py +20 -0
- scipy/_lib/cobyqa/framework.py +1240 -0
- scipy/_lib/cobyqa/main.py +1506 -0
- scipy/_lib/cobyqa/models.py +1529 -0
- scipy/_lib/cobyqa/problem.py +1296 -0
- scipy/_lib/cobyqa/settings.py +132 -0
- scipy/_lib/cobyqa/subsolvers/__init__.py +14 -0
- scipy/_lib/cobyqa/subsolvers/geometry.py +387 -0
- scipy/_lib/cobyqa/subsolvers/optim.py +1203 -0
- scipy/_lib/cobyqa/utils/__init__.py +18 -0
- scipy/_lib/cobyqa/utils/exceptions.py +22 -0
- scipy/_lib/cobyqa/utils/math.py +77 -0
- scipy/_lib/cobyqa/utils/versions.py +67 -0
- scipy/_lib/decorator.py +399 -0
- scipy/_lib/deprecation.py +274 -0
- scipy/_lib/doccer.py +366 -0
- scipy/_lib/messagestream.cp313t-win_arm64.lib +0 -0
- scipy/_lib/messagestream.cp313t-win_arm64.pyd +0 -0
- scipy/_lib/pyprima/__init__.py +212 -0
- scipy/_lib/pyprima/cobyla/__init__.py +0 -0
- scipy/_lib/pyprima/cobyla/cobyla.py +559 -0
- scipy/_lib/pyprima/cobyla/cobylb.py +714 -0
- scipy/_lib/pyprima/cobyla/geometry.py +226 -0
- scipy/_lib/pyprima/cobyla/initialize.py +215 -0
- scipy/_lib/pyprima/cobyla/trustregion.py +492 -0
- scipy/_lib/pyprima/cobyla/update.py +289 -0
- scipy/_lib/pyprima/common/__init__.py +0 -0
- scipy/_lib/pyprima/common/_bounds.py +34 -0
- scipy/_lib/pyprima/common/_linear_constraints.py +46 -0
- scipy/_lib/pyprima/common/_nonlinear_constraints.py +54 -0
- scipy/_lib/pyprima/common/_project.py +173 -0
- scipy/_lib/pyprima/common/checkbreak.py +93 -0
- scipy/_lib/pyprima/common/consts.py +47 -0
- scipy/_lib/pyprima/common/evaluate.py +99 -0
- scipy/_lib/pyprima/common/history.py +38 -0
- scipy/_lib/pyprima/common/infos.py +30 -0
- scipy/_lib/pyprima/common/linalg.py +435 -0
- scipy/_lib/pyprima/common/message.py +290 -0
- scipy/_lib/pyprima/common/powalg.py +131 -0
- scipy/_lib/pyprima/common/preproc.py +277 -0
- scipy/_lib/pyprima/common/present.py +5 -0
- scipy/_lib/pyprima/common/ratio.py +54 -0
- scipy/_lib/pyprima/common/redrho.py +47 -0
- scipy/_lib/pyprima/common/selectx.py +296 -0
- scipy/_lib/tests/__init__.py +0 -0
- scipy/_lib/tests/test__gcutils.py +110 -0
- scipy/_lib/tests/test__pep440.py +67 -0
- scipy/_lib/tests/test__testutils.py +32 -0
- scipy/_lib/tests/test__threadsafety.py +51 -0
- scipy/_lib/tests/test__util.py +641 -0
- scipy/_lib/tests/test_array_api.py +322 -0
- scipy/_lib/tests/test_bunch.py +169 -0
- scipy/_lib/tests/test_ccallback.py +196 -0
- scipy/_lib/tests/test_config.py +45 -0
- scipy/_lib/tests/test_deprecation.py +10 -0
- scipy/_lib/tests/test_doccer.py +143 -0
- scipy/_lib/tests/test_import_cycles.py +18 -0
- scipy/_lib/tests/test_public_api.py +482 -0
- scipy/_lib/tests/test_scipy_version.py +28 -0
- scipy/_lib/tests/test_tmpdirs.py +48 -0
- scipy/_lib/tests/test_warnings.py +137 -0
- scipy/_lib/uarray.py +31 -0
- scipy/cluster/__init__.py +31 -0
- scipy/cluster/_hierarchy.cp313t-win_arm64.lib +0 -0
- scipy/cluster/_hierarchy.cp313t-win_arm64.pyd +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp313t-win_arm64.lib +0 -0
- scipy/cluster/_optimal_leaf_ordering.cp313t-win_arm64.pyd +0 -0
- scipy/cluster/_vq.cp313t-win_arm64.lib +0 -0
- scipy/cluster/_vq.cp313t-win_arm64.pyd +0 -0
- scipy/cluster/hierarchy.py +4348 -0
- scipy/cluster/tests/__init__.py +0 -0
- scipy/cluster/tests/hierarchy_test_data.py +145 -0
- scipy/cluster/tests/test_disjoint_set.py +202 -0
- scipy/cluster/tests/test_hierarchy.py +1238 -0
- scipy/cluster/tests/test_vq.py +434 -0
- scipy/cluster/vq.py +832 -0
- scipy/conftest.py +683 -0
- scipy/constants/__init__.py +358 -0
- scipy/constants/_codata.py +2266 -0
- scipy/constants/_constants.py +369 -0
- scipy/constants/codata.py +21 -0
- scipy/constants/constants.py +53 -0
- scipy/constants/tests/__init__.py +0 -0
- scipy/constants/tests/test_codata.py +78 -0
- scipy/constants/tests/test_constants.py +83 -0
- scipy/datasets/__init__.py +90 -0
- scipy/datasets/_download_all.py +71 -0
- scipy/datasets/_fetchers.py +225 -0
- scipy/datasets/_registry.py +26 -0
- scipy/datasets/_utils.py +81 -0
- scipy/datasets/tests/__init__.py +0 -0
- scipy/datasets/tests/test_data.py +128 -0
- scipy/differentiate/__init__.py +27 -0
- scipy/differentiate/_differentiate.py +1129 -0
- scipy/differentiate/tests/__init__.py +0 -0
- scipy/differentiate/tests/test_differentiate.py +694 -0
- scipy/fft/__init__.py +114 -0
- scipy/fft/_backend.py +196 -0
- scipy/fft/_basic.py +1650 -0
- scipy/fft/_basic_backend.py +197 -0
- scipy/fft/_debug_backends.py +22 -0
- scipy/fft/_fftlog.py +223 -0
- scipy/fft/_fftlog_backend.py +200 -0
- scipy/fft/_helper.py +348 -0
- scipy/fft/_pocketfft/LICENSE.md +25 -0
- scipy/fft/_pocketfft/__init__.py +9 -0
- scipy/fft/_pocketfft/basic.py +251 -0
- scipy/fft/_pocketfft/helper.py +249 -0
- scipy/fft/_pocketfft/pypocketfft.cp313t-win_arm64.lib +0 -0
- scipy/fft/_pocketfft/pypocketfft.cp313t-win_arm64.pyd +0 -0
- scipy/fft/_pocketfft/realtransforms.py +109 -0
- scipy/fft/_pocketfft/tests/__init__.py +0 -0
- scipy/fft/_pocketfft/tests/test_basic.py +1011 -0
- scipy/fft/_pocketfft/tests/test_real_transforms.py +505 -0
- scipy/fft/_realtransforms.py +706 -0
- scipy/fft/_realtransforms_backend.py +63 -0
- scipy/fft/tests/__init__.py +0 -0
- scipy/fft/tests/mock_backend.py +96 -0
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- scipy/fft/tests/test_fftlog.py +215 -0
- scipy/fft/tests/test_helper.py +558 -0
- scipy/fft/tests/test_multithreading.py +84 -0
- scipy/fft/tests/test_real_transforms.py +247 -0
- scipy/fftpack/__init__.py +103 -0
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- scipy/fftpack/_realtransforms.py +598 -0
- scipy/fftpack/basic.py +20 -0
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- scipy/fftpack/pseudo_diffs.py +22 -0
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- scipy/fftpack/tests/test_import.py +33 -0
- scipy/fftpack/tests/test_pseudo_diffs.py +388 -0
- scipy/fftpack/tests/test_real_transforms.py +836 -0
- scipy/integrate/__init__.py +122 -0
- scipy/integrate/_bvp.py +1160 -0
- scipy/integrate/_cubature.py +729 -0
- scipy/integrate/_dop.cp313t-win_arm64.lib +0 -0
- scipy/integrate/_dop.cp313t-win_arm64.pyd +0 -0
- scipy/integrate/_ivp/__init__.py +8 -0
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- scipy/integrate/_ivp/dop853_coefficients.py +193 -0
- scipy/integrate/_ivp/ivp.py +755 -0
- scipy/integrate/_ivp/lsoda.py +224 -0
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- scipy/integrate/_ivp/rk.py +601 -0
- scipy/integrate/_ivp/tests/__init__.py +0 -0
- scipy/integrate/_ivp/tests/test_ivp.py +1287 -0
- scipy/integrate/_ivp/tests/test_rk.py +37 -0
- scipy/integrate/_lebedev.py +5450 -0
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- scipy/integrate/_ode.py +1395 -0
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- scipy/integrate/_rules/__init__.py +12 -0
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- scipy/integrate/_rules/_gauss_kronrod.py +202 -0
- scipy/integrate/_rules/_gauss_legendre.py +62 -0
- scipy/integrate/_rules/_genz_malik.py +210 -0
- scipy/integrate/_tanhsinh.py +1385 -0
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- scipy/integrate/tests/test_tanhsinh.py +1171 -0
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import warnings
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import numpy as np
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from scipy.sparse.linalg._interface import LinearOperator
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from .utils import make_system
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from scipy.linalg import get_lapack_funcs
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__all__ = ['bicg', 'bicgstab', 'cg', 'cgs', 'gmres', 'qmr']
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A helper function to handle tolerance normalization
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def bicg(A, b, x0=None, *, rtol=1e-5, atol=0., maxiter=None, M=None, callback=None):
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Solve ``Ax = b`` with the BIConjugate Gradient method.
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----------
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The real or complex N-by-N matrix of the linear system.
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``scipy.sparse.linalg.LinearOperator``.
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Right hand side of the linear system. Has shape (N,) or (N,1).
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Starting guess for the solution.
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Parameters for the convergence test. For convergence,
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The default is ``atol=0.`` and ``rtol=1e-5``.
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Maximum number of iterations. Iteration will stop after maxiter
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Preconditioner for `A`. It should approximate the
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The converged solution.
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-----
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condition number than `A`, see [1]_ .
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References
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.. [1] "Preconditioner", Wikipedia,
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https://en.wikipedia.org/wiki/Preconditioner
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.. [2] "Biconjugate gradient method", Wikipedia,
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https://en.wikipedia.org/wiki/Biconjugate_gradient_method
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Examples
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--------
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>>> A = csc_array([[3, 2, 0], [1, -1, 0], [0, 5, 1.]])
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0
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True
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matvec, rmatvec = A.matvec, A.rmatvec
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z = psolve(r)
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if iteration > 0:
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beta = rho_cur / rho_prev
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p += z
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ptilde *= beta.conj()
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p = z.copy()
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q = matvec(p)
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qtilde = rmatvec(ptilde)
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rv = dotprod(ptilde, q)
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alpha = rho_cur / rv
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x += alpha*p
|
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+
r -= alpha*q
|
147
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+
rtilde -= alpha.conj()*qtilde
|
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|
+
rho_prev = rho_cur
|
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+
|
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|
+
if callback:
|
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|
+
callback(x)
|
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|
+
|
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|
+
else: # for loop exhausted
|
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+
# Return incomplete progress
|
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+
return x, maxiter
|
156
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+
|
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+
|
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|
+
def bicgstab(A, b, x0=None, *, rtol=1e-5, atol=0., maxiter=None, M=None,
|
159
|
+
callback=None):
|
160
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+
"""
|
161
|
+
Solve ``Ax = b`` with the BIConjugate Gradient STABilized method.
|
162
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+
|
163
|
+
Parameters
|
164
|
+
----------
|
165
|
+
A : {sparse array, ndarray, LinearOperator}
|
166
|
+
The real or complex N-by-N matrix of the linear system.
|
167
|
+
Alternatively, `A` can be a linear operator which can
|
168
|
+
produce ``Ax`` and ``A^T x`` using, e.g.,
|
169
|
+
``scipy.sparse.linalg.LinearOperator``.
|
170
|
+
b : ndarray
|
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|
+
Right hand side of the linear system. Has shape (N,) or (N,1).
|
172
|
+
x0 : ndarray
|
173
|
+
Starting guess for the solution.
|
174
|
+
rtol, atol : float, optional
|
175
|
+
Parameters for the convergence test. For convergence,
|
176
|
+
``norm(b - A @ x) <= max(rtol*norm(b), atol)`` should be satisfied.
|
177
|
+
The default is ``atol=0.`` and ``rtol=1e-5``.
|
178
|
+
maxiter : integer
|
179
|
+
Maximum number of iterations. Iteration will stop after maxiter
|
180
|
+
steps even if the specified tolerance has not been achieved.
|
181
|
+
M : {sparse array, ndarray, LinearOperator}
|
182
|
+
Preconditioner for `A`. It should approximate the
|
183
|
+
inverse of `A` (see Notes). Effective preconditioning dramatically improves the
|
184
|
+
rate of convergence, which implies that fewer iterations are needed
|
185
|
+
to reach a given error tolerance.
|
186
|
+
callback : function
|
187
|
+
User-supplied function to call after each iteration. It is called
|
188
|
+
as ``callback(xk)``, where ``xk`` is the current solution vector.
|
189
|
+
|
190
|
+
Returns
|
191
|
+
-------
|
192
|
+
x : ndarray
|
193
|
+
The converged solution.
|
194
|
+
info : integer
|
195
|
+
Provides convergence information:
|
196
|
+
0 : successful exit
|
197
|
+
>0 : convergence to tolerance not achieved, number of iterations
|
198
|
+
<0 : parameter breakdown
|
199
|
+
|
200
|
+
Notes
|
201
|
+
-----
|
202
|
+
The preconditioner `M` should be a matrix such that ``M @ A`` has a smaller
|
203
|
+
condition number than `A`, see [1]_ .
|
204
|
+
|
205
|
+
References
|
206
|
+
----------
|
207
|
+
.. [1] "Preconditioner", Wikipedia,
|
208
|
+
https://en.wikipedia.org/wiki/Preconditioner
|
209
|
+
.. [2] "Biconjugate gradient stabilized method",
|
210
|
+
Wikipedia, https://en.wikipedia.org/wiki/Biconjugate_gradient_stabilized_method
|
211
|
+
|
212
|
+
Examples
|
213
|
+
--------
|
214
|
+
>>> import numpy as np
|
215
|
+
>>> from scipy.sparse import csc_array
|
216
|
+
>>> from scipy.sparse.linalg import bicgstab
|
217
|
+
>>> R = np.array([[4, 2, 0, 1],
|
218
|
+
... [3, 0, 0, 2],
|
219
|
+
... [0, 1, 1, 1],
|
220
|
+
... [0, 2, 1, 0]])
|
221
|
+
>>> A = csc_array(R)
|
222
|
+
>>> b = np.array([-1, -0.5, -1, 2])
|
223
|
+
>>> x, exit_code = bicgstab(A, b, atol=1e-5)
|
224
|
+
>>> print(exit_code) # 0 indicates successful convergence
|
225
|
+
0
|
226
|
+
>>> np.allclose(A.dot(x), b)
|
227
|
+
True
|
228
|
+
"""
|
229
|
+
A, M, x, b = make_system(A, M, x0, b)
|
230
|
+
bnrm2 = np.linalg.norm(b)
|
231
|
+
|
232
|
+
atol, _ = _get_atol_rtol('bicgstab', bnrm2, atol, rtol)
|
233
|
+
|
234
|
+
if bnrm2 == 0:
|
235
|
+
return b, 0
|
236
|
+
|
237
|
+
n = len(b)
|
238
|
+
|
239
|
+
dotprod = np.vdot if np.iscomplexobj(x) else np.dot
|
240
|
+
|
241
|
+
if maxiter is None:
|
242
|
+
maxiter = n*10
|
243
|
+
|
244
|
+
matvec = A.matvec
|
245
|
+
psolve = M.matvec
|
246
|
+
|
247
|
+
# These values make no sense but coming from original Fortran code
|
248
|
+
# sqrt might have been meant instead.
|
249
|
+
rhotol = np.finfo(x.dtype.char).eps**2
|
250
|
+
omegatol = rhotol
|
251
|
+
|
252
|
+
# Dummy values to initialize vars, silence linter warnings
|
253
|
+
rho_prev, omega, alpha, p, v = None, None, None, None, None
|
254
|
+
|
255
|
+
r = b - matvec(x) if x.any() else b.copy()
|
256
|
+
rtilde = r.copy()
|
257
|
+
|
258
|
+
for iteration in range(maxiter):
|
259
|
+
if np.linalg.norm(r) < atol: # Are we done?
|
260
|
+
return x, 0
|
261
|
+
|
262
|
+
rho = dotprod(rtilde, r)
|
263
|
+
if np.abs(rho) < rhotol: # rho breakdown
|
264
|
+
return x, -10
|
265
|
+
|
266
|
+
if iteration > 0:
|
267
|
+
if np.abs(omega) < omegatol: # omega breakdown
|
268
|
+
return x, -11
|
269
|
+
|
270
|
+
beta = (rho / rho_prev) * (alpha / omega)
|
271
|
+
p -= omega*v
|
272
|
+
p *= beta
|
273
|
+
p += r
|
274
|
+
else: # First spin
|
275
|
+
s = np.empty_like(r)
|
276
|
+
p = r.copy()
|
277
|
+
|
278
|
+
phat = psolve(p)
|
279
|
+
v = matvec(phat)
|
280
|
+
rv = dotprod(rtilde, v)
|
281
|
+
if rv == 0:
|
282
|
+
return x, -11
|
283
|
+
alpha = rho / rv
|
284
|
+
r -= alpha*v
|
285
|
+
s[:] = r[:]
|
286
|
+
|
287
|
+
if np.linalg.norm(s) < atol:
|
288
|
+
x += alpha*phat
|
289
|
+
return x, 0
|
290
|
+
|
291
|
+
shat = psolve(s)
|
292
|
+
t = matvec(shat)
|
293
|
+
omega = dotprod(t, s) / dotprod(t, t)
|
294
|
+
x += alpha*phat
|
295
|
+
x += omega*shat
|
296
|
+
r -= omega*t
|
297
|
+
rho_prev = rho
|
298
|
+
|
299
|
+
if callback:
|
300
|
+
callback(x)
|
301
|
+
|
302
|
+
else: # for loop exhausted
|
303
|
+
# Return incomplete progress
|
304
|
+
return x, maxiter
|
305
|
+
|
306
|
+
|
307
|
+
def cg(A, b, x0=None, *, rtol=1e-5, atol=0., maxiter=None, M=None, callback=None):
|
308
|
+
"""
|
309
|
+
Solve ``Ax = b`` with the Conjugate Gradient method, for a symmetric,
|
310
|
+
positive-definite `A`.
|
311
|
+
|
312
|
+
Parameters
|
313
|
+
----------
|
314
|
+
A : {sparse array, ndarray, LinearOperator}
|
315
|
+
The real or complex N-by-N matrix of the linear system.
|
316
|
+
`A` must represent a hermitian, positive definite matrix.
|
317
|
+
Alternatively, `A` can be a linear operator which can
|
318
|
+
produce ``Ax`` using, e.g.,
|
319
|
+
``scipy.sparse.linalg.LinearOperator``.
|
320
|
+
b : ndarray
|
321
|
+
Right hand side of the linear system. Has shape (N,) or (N,1).
|
322
|
+
x0 : ndarray
|
323
|
+
Starting guess for the solution.
|
324
|
+
rtol, atol : float, optional
|
325
|
+
Parameters for the convergence test. For convergence,
|
326
|
+
``norm(b - A @ x) <= max(rtol*norm(b), atol)`` should be satisfied.
|
327
|
+
The default is ``atol=0.`` and ``rtol=1e-5``.
|
328
|
+
maxiter : integer
|
329
|
+
Maximum number of iterations. Iteration will stop after maxiter
|
330
|
+
steps even if the specified tolerance has not been achieved.
|
331
|
+
M : {sparse array, ndarray, LinearOperator}
|
332
|
+
Preconditioner for `A`. `M` must represent a hermitian, positive definite
|
333
|
+
matrix. It should approximate the inverse of `A` (see Notes).
|
334
|
+
Effective preconditioning dramatically improves the
|
335
|
+
rate of convergence, which implies that fewer iterations are needed
|
336
|
+
to reach a given error tolerance.
|
337
|
+
callback : function
|
338
|
+
User-supplied function to call after each iteration. It is called
|
339
|
+
as ``callback(xk)``, where ``xk`` is the current solution vector.
|
340
|
+
|
341
|
+
Returns
|
342
|
+
-------
|
343
|
+
x : ndarray
|
344
|
+
The converged solution.
|
345
|
+
info : integer
|
346
|
+
Provides convergence information:
|
347
|
+
0 : successful exit
|
348
|
+
>0 : convergence to tolerance not achieved, number of iterations
|
349
|
+
|
350
|
+
Notes
|
351
|
+
-----
|
352
|
+
The preconditioner `M` should be a matrix such that ``M @ A`` has a smaller
|
353
|
+
condition number than `A`, see [2]_.
|
354
|
+
|
355
|
+
References
|
356
|
+
----------
|
357
|
+
.. [1] "Conjugate Gradient Method, Wikipedia,
|
358
|
+
https://en.wikipedia.org/wiki/Conjugate_gradient_method
|
359
|
+
.. [2] "Preconditioner",
|
360
|
+
Wikipedia, https://en.wikipedia.org/wiki/Preconditioner
|
361
|
+
|
362
|
+
Examples
|
363
|
+
--------
|
364
|
+
>>> import numpy as np
|
365
|
+
>>> from scipy.sparse import csc_array
|
366
|
+
>>> from scipy.sparse.linalg import cg
|
367
|
+
>>> P = np.array([[4, 0, 1, 0],
|
368
|
+
... [0, 5, 0, 0],
|
369
|
+
... [1, 0, 3, 2],
|
370
|
+
... [0, 0, 2, 4]])
|
371
|
+
>>> A = csc_array(P)
|
372
|
+
>>> b = np.array([-1, -0.5, -1, 2])
|
373
|
+
>>> x, exit_code = cg(A, b, atol=1e-5)
|
374
|
+
>>> print(exit_code) # 0 indicates successful convergence
|
375
|
+
0
|
376
|
+
>>> np.allclose(A.dot(x), b)
|
377
|
+
True
|
378
|
+
"""
|
379
|
+
A, M, x, b = make_system(A, M, x0, b)
|
380
|
+
bnrm2 = np.linalg.norm(b)
|
381
|
+
|
382
|
+
atol, _ = _get_atol_rtol('cg', bnrm2, atol, rtol)
|
383
|
+
|
384
|
+
if bnrm2 == 0:
|
385
|
+
return b, 0
|
386
|
+
|
387
|
+
n = len(b)
|
388
|
+
|
389
|
+
if maxiter is None:
|
390
|
+
maxiter = n*10
|
391
|
+
|
392
|
+
dotprod = np.vdot if np.iscomplexobj(x) else np.dot
|
393
|
+
|
394
|
+
matvec = A.matvec
|
395
|
+
psolve = M.matvec
|
396
|
+
r = b - matvec(x) if x.any() else b.copy()
|
397
|
+
|
398
|
+
# Dummy value to initialize var, silences warnings
|
399
|
+
rho_prev, p = None, None
|
400
|
+
|
401
|
+
for iteration in range(maxiter):
|
402
|
+
if np.linalg.norm(r) < atol: # Are we done?
|
403
|
+
return x, 0
|
404
|
+
|
405
|
+
z = psolve(r)
|
406
|
+
rho_cur = dotprod(r, z)
|
407
|
+
if iteration > 0:
|
408
|
+
beta = rho_cur / rho_prev
|
409
|
+
p *= beta
|
410
|
+
p += z
|
411
|
+
else: # First spin
|
412
|
+
p = np.empty_like(r)
|
413
|
+
p[:] = z[:]
|
414
|
+
|
415
|
+
q = matvec(p)
|
416
|
+
alpha = rho_cur / dotprod(p, q)
|
417
|
+
x += alpha*p
|
418
|
+
r -= alpha*q
|
419
|
+
rho_prev = rho_cur
|
420
|
+
|
421
|
+
if callback:
|
422
|
+
callback(x)
|
423
|
+
|
424
|
+
else: # for loop exhausted
|
425
|
+
# Return incomplete progress
|
426
|
+
return x, maxiter
|
427
|
+
|
428
|
+
|
429
|
+
def cgs(A, b, x0=None, *, rtol=1e-5, atol=0., maxiter=None, M=None, callback=None):
|
430
|
+
"""
|
431
|
+
Solve ``Ax = b`` with the Conjugate Gradient Squared method.
|
432
|
+
|
433
|
+
Parameters
|
434
|
+
----------
|
435
|
+
A : {sparse array, ndarray, LinearOperator}
|
436
|
+
The real-valued N-by-N matrix of the linear system.
|
437
|
+
Alternatively, `A` can be a linear operator which can
|
438
|
+
produce ``Ax`` using, e.g.,
|
439
|
+
``scipy.sparse.linalg.LinearOperator``.
|
440
|
+
b : ndarray
|
441
|
+
Right hand side of the linear system. Has shape (N,) or (N,1).
|
442
|
+
x0 : ndarray
|
443
|
+
Starting guess for the solution.
|
444
|
+
rtol, atol : float, optional
|
445
|
+
Parameters for the convergence test. For convergence,
|
446
|
+
``norm(b - A @ x) <= max(rtol*norm(b), atol)`` should be satisfied.
|
447
|
+
The default is ``atol=0.`` and ``rtol=1e-5``.
|
448
|
+
maxiter : integer
|
449
|
+
Maximum number of iterations. Iteration will stop after maxiter
|
450
|
+
steps even if the specified tolerance has not been achieved.
|
451
|
+
M : {sparse array, ndarray, LinearOperator}
|
452
|
+
Preconditioner for ``A``. It should approximate the
|
453
|
+
inverse of `A` (see Notes). Effective preconditioning dramatically improves the
|
454
|
+
rate of convergence, which implies that fewer iterations are needed
|
455
|
+
to reach a given error tolerance.
|
456
|
+
callback : function
|
457
|
+
User-supplied function to call after each iteration. It is called
|
458
|
+
as ``callback(xk)``, where ``xk`` is the current solution vector.
|
459
|
+
|
460
|
+
Returns
|
461
|
+
-------
|
462
|
+
x : ndarray
|
463
|
+
The converged solution.
|
464
|
+
info : integer
|
465
|
+
Provides convergence information:
|
466
|
+
0 : successful exit
|
467
|
+
>0 : convergence to tolerance not achieved, number of iterations
|
468
|
+
<0 : parameter breakdown
|
469
|
+
|
470
|
+
Notes
|
471
|
+
-----
|
472
|
+
The preconditioner `M` should be a matrix such that ``M @ A`` has a smaller
|
473
|
+
condition number than `A`, see [1]_.
|
474
|
+
|
475
|
+
References
|
476
|
+
----------
|
477
|
+
.. [1] "Preconditioner", Wikipedia,
|
478
|
+
https://en.wikipedia.org/wiki/Preconditioner
|
479
|
+
.. [2] "Conjugate gradient squared", Wikipedia,
|
480
|
+
https://en.wikipedia.org/wiki/Conjugate_gradient_squared_method
|
481
|
+
|
482
|
+
Examples
|
483
|
+
--------
|
484
|
+
>>> import numpy as np
|
485
|
+
>>> from scipy.sparse import csc_array
|
486
|
+
>>> from scipy.sparse.linalg import cgs
|
487
|
+
>>> R = np.array([[4, 2, 0, 1],
|
488
|
+
... [3, 0, 0, 2],
|
489
|
+
... [0, 1, 1, 1],
|
490
|
+
... [0, 2, 1, 0]])
|
491
|
+
>>> A = csc_array(R)
|
492
|
+
>>> b = np.array([-1, -0.5, -1, 2])
|
493
|
+
>>> x, exit_code = cgs(A, b)
|
494
|
+
>>> print(exit_code) # 0 indicates successful convergence
|
495
|
+
0
|
496
|
+
>>> np.allclose(A.dot(x), b)
|
497
|
+
True
|
498
|
+
"""
|
499
|
+
A, M, x, b = make_system(A, M, x0, b)
|
500
|
+
bnrm2 = np.linalg.norm(b)
|
501
|
+
|
502
|
+
atol, _ = _get_atol_rtol('cgs', bnrm2, atol, rtol)
|
503
|
+
|
504
|
+
if bnrm2 == 0:
|
505
|
+
return b, 0
|
506
|
+
|
507
|
+
n = len(b)
|
508
|
+
|
509
|
+
dotprod = np.vdot if np.iscomplexobj(x) else np.dot
|
510
|
+
|
511
|
+
if maxiter is None:
|
512
|
+
maxiter = n*10
|
513
|
+
|
514
|
+
matvec = A.matvec
|
515
|
+
psolve = M.matvec
|
516
|
+
|
517
|
+
rhotol = np.finfo(x.dtype.char).eps**2
|
518
|
+
|
519
|
+
r = b - matvec(x) if x.any() else b.copy()
|
520
|
+
|
521
|
+
rtilde = r.copy()
|
522
|
+
bnorm = np.linalg.norm(b)
|
523
|
+
if bnorm == 0:
|
524
|
+
bnorm = 1
|
525
|
+
|
526
|
+
# Dummy values to initialize vars, silence linter warnings
|
527
|
+
rho_prev, p, u, q = None, None, None, None
|
528
|
+
|
529
|
+
for iteration in range(maxiter):
|
530
|
+
rnorm = np.linalg.norm(r)
|
531
|
+
if rnorm < atol: # Are we done?
|
532
|
+
return x, 0
|
533
|
+
|
534
|
+
rho_cur = dotprod(rtilde, r)
|
535
|
+
if np.abs(rho_cur) < rhotol: # Breakdown case
|
536
|
+
return x, -10
|
537
|
+
|
538
|
+
if iteration > 0:
|
539
|
+
beta = rho_cur / rho_prev
|
540
|
+
|
541
|
+
# u = r + beta * q
|
542
|
+
# p = u + beta * (q + beta * p);
|
543
|
+
u[:] = r[:]
|
544
|
+
u += beta*q
|
545
|
+
|
546
|
+
p *= beta
|
547
|
+
p += q
|
548
|
+
p *= beta
|
549
|
+
p += u
|
550
|
+
|
551
|
+
else: # First spin
|
552
|
+
p = r.copy()
|
553
|
+
u = r.copy()
|
554
|
+
q = np.empty_like(r)
|
555
|
+
|
556
|
+
phat = psolve(p)
|
557
|
+
vhat = matvec(phat)
|
558
|
+
rv = dotprod(rtilde, vhat)
|
559
|
+
|
560
|
+
if rv == 0: # Dot product breakdown
|
561
|
+
return x, -11
|
562
|
+
|
563
|
+
alpha = rho_cur / rv
|
564
|
+
q[:] = u[:]
|
565
|
+
q -= alpha*vhat
|
566
|
+
uhat = psolve(u + q)
|
567
|
+
x += alpha*uhat
|
568
|
+
|
569
|
+
# Due to numerical error build-up the actual residual is computed
|
570
|
+
# instead of the following two lines that were in the original
|
571
|
+
# FORTRAN templates, still using a single matvec.
|
572
|
+
|
573
|
+
# qhat = matvec(uhat)
|
574
|
+
# r -= alpha*qhat
|
575
|
+
r = b - matvec(x)
|
576
|
+
|
577
|
+
rho_prev = rho_cur
|
578
|
+
|
579
|
+
if callback:
|
580
|
+
callback(x)
|
581
|
+
|
582
|
+
else: # for loop exhausted
|
583
|
+
# Return incomplete progress
|
584
|
+
return x, maxiter
|
585
|
+
|
586
|
+
|
587
|
+
def gmres(A, b, x0=None, *, rtol=1e-5, atol=0., restart=None, maxiter=None, M=None,
|
588
|
+
callback=None, callback_type=None):
|
589
|
+
"""
|
590
|
+
Solve ``Ax = b`` with the Generalized Minimal RESidual method.
|
591
|
+
|
592
|
+
Parameters
|
593
|
+
----------
|
594
|
+
A : {sparse array, ndarray, LinearOperator}
|
595
|
+
The real or complex N-by-N matrix of the linear system.
|
596
|
+
Alternatively, `A` can be a linear operator which can
|
597
|
+
produce ``Ax`` using, e.g.,
|
598
|
+
``scipy.sparse.linalg.LinearOperator``.
|
599
|
+
b : ndarray
|
600
|
+
Right hand side of the linear system. Has shape (N,) or (N,1).
|
601
|
+
x0 : ndarray
|
602
|
+
Starting guess for the solution (a vector of zeros by default).
|
603
|
+
atol, rtol : float
|
604
|
+
Parameters for the convergence test. For convergence,
|
605
|
+
``norm(b - A @ x) <= max(rtol*norm(b), atol)`` should be satisfied.
|
606
|
+
The default is ``atol=0.`` and ``rtol=1e-5``.
|
607
|
+
restart : int, optional
|
608
|
+
Number of iterations between restarts. Larger values increase
|
609
|
+
iteration cost, but may be necessary for convergence.
|
610
|
+
If omitted, ``min(20, n)`` is used.
|
611
|
+
maxiter : int, optional
|
612
|
+
Maximum number of iterations (restart cycles). Iteration will stop
|
613
|
+
after maxiter steps even if the specified tolerance has not been
|
614
|
+
achieved. See `callback_type`.
|
615
|
+
M : {sparse array, ndarray, LinearOperator}
|
616
|
+
Inverse of the preconditioner of `A`. `M` should approximate the
|
617
|
+
inverse of `A` and be easy to solve for (see Notes). Effective
|
618
|
+
preconditioning dramatically improves the rate of convergence,
|
619
|
+
which implies that fewer iterations are needed to reach a given
|
620
|
+
error tolerance. By default, no preconditioner is used.
|
621
|
+
In this implementation, left preconditioning is used,
|
622
|
+
and the preconditioned residual is minimized. However, the final
|
623
|
+
convergence is tested with respect to the ``b - A @ x`` residual.
|
624
|
+
callback : function
|
625
|
+
User-supplied function to call after each iteration. It is called
|
626
|
+
as ``callback(args)``, where ``args`` are selected by `callback_type`.
|
627
|
+
callback_type : {'x', 'pr_norm', 'legacy'}, optional
|
628
|
+
Callback function argument requested:
|
629
|
+
- ``x``: current iterate (ndarray), called on every restart
|
630
|
+
- ``pr_norm``: relative (preconditioned) residual norm (float),
|
631
|
+
called on every inner iteration
|
632
|
+
- ``legacy`` (default): same as ``pr_norm``, but also changes the
|
633
|
+
meaning of `maxiter` to count inner iterations instead of restart
|
634
|
+
cycles.
|
635
|
+
|
636
|
+
This keyword has no effect if `callback` is not set.
|
637
|
+
|
638
|
+
Returns
|
639
|
+
-------
|
640
|
+
x : ndarray
|
641
|
+
The converged solution.
|
642
|
+
info : int
|
643
|
+
Provides convergence information:
|
644
|
+
0 : successful exit
|
645
|
+
>0 : convergence to tolerance not achieved, number of iterations
|
646
|
+
|
647
|
+
See Also
|
648
|
+
--------
|
649
|
+
LinearOperator
|
650
|
+
|
651
|
+
Notes
|
652
|
+
-----
|
653
|
+
A preconditioner, P, is chosen such that P is close to A but easy to solve
|
654
|
+
for. The preconditioner parameter required by this routine is
|
655
|
+
``M = P^-1``. The inverse should preferably not be calculated
|
656
|
+
explicitly. Rather, use the following template to produce M::
|
657
|
+
|
658
|
+
# Construct a linear operator that computes P^-1 @ x.
|
659
|
+
import scipy.sparse.linalg as spla
|
660
|
+
M_x = lambda x: spla.spsolve(P, x)
|
661
|
+
M = spla.LinearOperator((n, n), M_x)
|
662
|
+
|
663
|
+
Examples
|
664
|
+
--------
|
665
|
+
>>> import numpy as np
|
666
|
+
>>> from scipy.sparse import csc_array
|
667
|
+
>>> from scipy.sparse.linalg import gmres
|
668
|
+
>>> A = csc_array([[3, 2, 0], [1, -1, 0], [0, 5, 1]], dtype=float)
|
669
|
+
>>> b = np.array([2, 4, -1], dtype=float)
|
670
|
+
>>> x, exitCode = gmres(A, b, atol=1e-5)
|
671
|
+
>>> print(exitCode) # 0 indicates successful convergence
|
672
|
+
0
|
673
|
+
>>> np.allclose(A.dot(x), b)
|
674
|
+
True
|
675
|
+
"""
|
676
|
+
if callback is not None and callback_type is None:
|
677
|
+
# Warn about 'callback_type' semantic changes.
|
678
|
+
# Probably should be removed only in far future, Scipy 2.0 or so.
|
679
|
+
msg = ("scipy.sparse.linalg.gmres called without specifying "
|
680
|
+
"`callback_type`. The default value will be changed in"
|
681
|
+
" a future release. For compatibility, specify a value "
|
682
|
+
"for `callback_type` explicitly, e.g., "
|
683
|
+
"``gmres(..., callback_type='pr_norm')``, or to retain the "
|
684
|
+
"old behavior ``gmres(..., callback_type='legacy')``"
|
685
|
+
)
|
686
|
+
warnings.warn(msg, category=DeprecationWarning, stacklevel=3)
|
687
|
+
|
688
|
+
if callback_type is None:
|
689
|
+
callback_type = 'legacy'
|
690
|
+
|
691
|
+
if callback_type not in ('x', 'pr_norm', 'legacy'):
|
692
|
+
raise ValueError(f"Unknown callback_type: {callback_type!r}")
|
693
|
+
|
694
|
+
if callback is None:
|
695
|
+
callback_type = None
|
696
|
+
|
697
|
+
A, M, x, b = make_system(A, M, x0, b)
|
698
|
+
matvec = A.matvec
|
699
|
+
psolve = M.matvec
|
700
|
+
n = len(b)
|
701
|
+
bnrm2 = np.linalg.norm(b)
|
702
|
+
|
703
|
+
atol, _ = _get_atol_rtol('gmres', bnrm2, atol, rtol)
|
704
|
+
|
705
|
+
if bnrm2 == 0:
|
706
|
+
return b, 0
|
707
|
+
|
708
|
+
eps = np.finfo(x.dtype.char).eps
|
709
|
+
|
710
|
+
dotprod = np.vdot if np.iscomplexobj(x) else np.dot
|
711
|
+
|
712
|
+
if maxiter is None:
|
713
|
+
maxiter = n*10
|
714
|
+
|
715
|
+
if restart is None:
|
716
|
+
restart = 20
|
717
|
+
restart = min(restart, n)
|
718
|
+
|
719
|
+
Mb_nrm2 = np.linalg.norm(psolve(b))
|
720
|
+
|
721
|
+
# ====================================================
|
722
|
+
# =========== Tolerance control from gh-8400 =========
|
723
|
+
# ====================================================
|
724
|
+
# Tolerance passed to GMRESREVCOM applies to the inner
|
725
|
+
# iteration and deals with the left-preconditioned
|
726
|
+
# residual.
|
727
|
+
ptol_max_factor = 1.
|
728
|
+
ptol = Mb_nrm2 * min(ptol_max_factor, atol / bnrm2)
|
729
|
+
presid = 0.
|
730
|
+
# ====================================================
|
731
|
+
lartg = get_lapack_funcs('lartg', dtype=x.dtype)
|
732
|
+
|
733
|
+
# allocate internal variables
|
734
|
+
v = np.empty([restart+1, n], dtype=x.dtype)
|
735
|
+
h = np.zeros([restart, restart+1], dtype=x.dtype)
|
736
|
+
givens = np.zeros([restart, 2], dtype=x.dtype)
|
737
|
+
|
738
|
+
# legacy iteration count
|
739
|
+
inner_iter = 0
|
740
|
+
|
741
|
+
for iteration in range(maxiter):
|
742
|
+
if iteration == 0:
|
743
|
+
r = b - matvec(x) if x.any() else b.copy()
|
744
|
+
if np.linalg.norm(r) < atol: # Are we done?
|
745
|
+
return x, 0
|
746
|
+
|
747
|
+
v[0, :] = psolve(r)
|
748
|
+
tmp = np.linalg.norm(v[0, :])
|
749
|
+
v[0, :] *= (1 / tmp)
|
750
|
+
# RHS of the Hessenberg problem
|
751
|
+
S = np.zeros(restart+1, dtype=x.dtype)
|
752
|
+
S[0] = tmp
|
753
|
+
|
754
|
+
breakdown = False
|
755
|
+
for col in range(restart):
|
756
|
+
av = matvec(v[col, :])
|
757
|
+
w = psolve(av)
|
758
|
+
|
759
|
+
# Modified Gram-Schmidt
|
760
|
+
h0 = np.linalg.norm(w)
|
761
|
+
for k in range(col+1):
|
762
|
+
tmp = dotprod(v[k, :], w)
|
763
|
+
h[col, k] = tmp
|
764
|
+
w -= tmp*v[k, :]
|
765
|
+
|
766
|
+
h1 = np.linalg.norm(w)
|
767
|
+
h[col, col + 1] = h1
|
768
|
+
v[col + 1, :] = w[:]
|
769
|
+
|
770
|
+
# Exact solution indicator
|
771
|
+
if h1 <= eps*h0:
|
772
|
+
h[col, col + 1] = 0
|
773
|
+
breakdown = True
|
774
|
+
else:
|
775
|
+
v[col + 1, :] *= (1 / h1)
|
776
|
+
|
777
|
+
# apply past Givens rotations to current h column
|
778
|
+
for k in range(col):
|
779
|
+
c, s = givens[k, 0], givens[k, 1]
|
780
|
+
n0, n1 = h[col, [k, k+1]]
|
781
|
+
h[col, [k, k + 1]] = [c*n0 + s*n1, -s.conj()*n0 + c*n1]
|
782
|
+
|
783
|
+
# get and apply current rotation to h and S
|
784
|
+
c, s, mag = lartg(h[col, col], h[col, col+1])
|
785
|
+
givens[col, :] = [c, s]
|
786
|
+
h[col, [col, col+1]] = mag, 0
|
787
|
+
|
788
|
+
# S[col+1] component is always 0
|
789
|
+
tmp = -np.conjugate(s)*S[col]
|
790
|
+
S[[col, col + 1]] = [c*S[col], tmp]
|
791
|
+
presid = np.abs(tmp)
|
792
|
+
inner_iter += 1
|
793
|
+
|
794
|
+
if callback_type in ('legacy', 'pr_norm'):
|
795
|
+
callback(presid / bnrm2)
|
796
|
+
# Legacy behavior
|
797
|
+
if callback_type == 'legacy' and inner_iter == maxiter:
|
798
|
+
break
|
799
|
+
if presid <= ptol or breakdown:
|
800
|
+
break
|
801
|
+
|
802
|
+
# Solve h(col, col) upper triangular system and allow pseudo-solve
|
803
|
+
# singular cases as in (but without the f2py copies):
|
804
|
+
# y = trsv(h[:col+1, :col+1].T, S[:col+1])
|
805
|
+
|
806
|
+
if h[col, col] == 0:
|
807
|
+
S[col] = 0
|
808
|
+
|
809
|
+
y = np.zeros([col+1], dtype=x.dtype)
|
810
|
+
y[:] = S[:col+1]
|
811
|
+
for k in range(col, 0, -1):
|
812
|
+
if y[k] != 0:
|
813
|
+
y[k] /= h[k, k]
|
814
|
+
tmp = y[k]
|
815
|
+
y[:k] -= tmp*h[k, :k]
|
816
|
+
if y[0] != 0:
|
817
|
+
y[0] /= h[0, 0]
|
818
|
+
|
819
|
+
x += y @ v[:col+1, :]
|
820
|
+
|
821
|
+
r = b - matvec(x)
|
822
|
+
rnorm = np.linalg.norm(r)
|
823
|
+
|
824
|
+
# Legacy exit
|
825
|
+
if callback_type == 'legacy' and inner_iter == maxiter:
|
826
|
+
return x, 0 if rnorm <= atol else maxiter
|
827
|
+
|
828
|
+
if callback_type == 'x':
|
829
|
+
callback(x)
|
830
|
+
|
831
|
+
if rnorm <= atol:
|
832
|
+
break
|
833
|
+
elif breakdown:
|
834
|
+
# Reached breakdown (= exact solution), but the external
|
835
|
+
# tolerance check failed. Bail out with failure.
|
836
|
+
break
|
837
|
+
elif presid <= ptol:
|
838
|
+
# Inner loop passed but outer didn't
|
839
|
+
ptol_max_factor = max(eps, 0.25 * ptol_max_factor)
|
840
|
+
else:
|
841
|
+
ptol_max_factor = min(1.0, 1.5 * ptol_max_factor)
|
842
|
+
|
843
|
+
ptol = presid * min(ptol_max_factor, atol / rnorm)
|
844
|
+
|
845
|
+
info = 0 if (rnorm <= atol) else maxiter
|
846
|
+
return x, info
|
847
|
+
|
848
|
+
|
849
|
+
def qmr(A, b, x0=None, *, rtol=1e-5, atol=0., maxiter=None, M1=None, M2=None,
|
850
|
+
callback=None):
|
851
|
+
"""
|
852
|
+
Solve ``Ax = b`` with the Quasi-Minimal Residual method.
|
853
|
+
|
854
|
+
Parameters
|
855
|
+
----------
|
856
|
+
A : {sparse array, ndarray, LinearOperator}
|
857
|
+
The real-valued N-by-N matrix of the linear system.
|
858
|
+
Alternatively, ``A`` can be a linear operator which can
|
859
|
+
produce ``Ax`` and ``A^T x`` using, e.g.,
|
860
|
+
``scipy.sparse.linalg.LinearOperator``.
|
861
|
+
b : ndarray
|
862
|
+
Right hand side of the linear system. Has shape (N,) or (N,1).
|
863
|
+
x0 : ndarray
|
864
|
+
Starting guess for the solution.
|
865
|
+
atol, rtol : float, optional
|
866
|
+
Parameters for the convergence test. For convergence,
|
867
|
+
``norm(b - A @ x) <= max(rtol*norm(b), atol)`` should be satisfied.
|
868
|
+
The default is ``atol=0.`` and ``rtol=1e-5``.
|
869
|
+
maxiter : integer
|
870
|
+
Maximum number of iterations. Iteration will stop after maxiter
|
871
|
+
steps even if the specified tolerance has not been achieved.
|
872
|
+
M1 : {sparse array, ndarray, LinearOperator}
|
873
|
+
Left preconditioner for A.
|
874
|
+
M2 : {sparse array, ndarray, LinearOperator}
|
875
|
+
Right preconditioner for A. Used together with the left
|
876
|
+
preconditioner M1. The matrix M1@A@M2 should have better
|
877
|
+
conditioned than A alone.
|
878
|
+
callback : function
|
879
|
+
User-supplied function to call after each iteration. It is called
|
880
|
+
as callback(xk), where xk is the current solution vector.
|
881
|
+
|
882
|
+
Returns
|
883
|
+
-------
|
884
|
+
x : ndarray
|
885
|
+
The converged solution.
|
886
|
+
info : integer
|
887
|
+
Provides convergence information:
|
888
|
+
0 : successful exit
|
889
|
+
>0 : convergence to tolerance not achieved, number of iterations
|
890
|
+
<0 : parameter breakdown
|
891
|
+
|
892
|
+
See Also
|
893
|
+
--------
|
894
|
+
LinearOperator
|
895
|
+
|
896
|
+
Examples
|
897
|
+
--------
|
898
|
+
>>> import numpy as np
|
899
|
+
>>> from scipy.sparse import csc_array
|
900
|
+
>>> from scipy.sparse.linalg import qmr
|
901
|
+
>>> A = csc_array([[3., 2., 0.], [1., -1., 0.], [0., 5., 1.]])
|
902
|
+
>>> b = np.array([2., 4., -1.])
|
903
|
+
>>> x, exitCode = qmr(A, b, atol=1e-5)
|
904
|
+
>>> print(exitCode) # 0 indicates successful convergence
|
905
|
+
0
|
906
|
+
>>> np.allclose(A.dot(x), b)
|
907
|
+
True
|
908
|
+
"""
|
909
|
+
A_ = A
|
910
|
+
A, M, x, b = make_system(A, None, x0, b)
|
911
|
+
bnrm2 = np.linalg.norm(b)
|
912
|
+
|
913
|
+
atol, _ = _get_atol_rtol('qmr', bnrm2, atol, rtol)
|
914
|
+
|
915
|
+
if bnrm2 == 0:
|
916
|
+
return b, 0
|
917
|
+
|
918
|
+
if M1 is None and M2 is None:
|
919
|
+
if hasattr(A_, 'psolve'):
|
920
|
+
def left_psolve(b):
|
921
|
+
return A_.psolve(b, 'left')
|
922
|
+
|
923
|
+
def right_psolve(b):
|
924
|
+
return A_.psolve(b, 'right')
|
925
|
+
|
926
|
+
def left_rpsolve(b):
|
927
|
+
return A_.rpsolve(b, 'left')
|
928
|
+
|
929
|
+
def right_rpsolve(b):
|
930
|
+
return A_.rpsolve(b, 'right')
|
931
|
+
M1 = LinearOperator(A.shape,
|
932
|
+
matvec=left_psolve,
|
933
|
+
rmatvec=left_rpsolve)
|
934
|
+
M2 = LinearOperator(A.shape,
|
935
|
+
matvec=right_psolve,
|
936
|
+
rmatvec=right_rpsolve)
|
937
|
+
else:
|
938
|
+
def id(b):
|
939
|
+
return b
|
940
|
+
M1 = LinearOperator(A.shape, matvec=id, rmatvec=id)
|
941
|
+
M2 = LinearOperator(A.shape, matvec=id, rmatvec=id)
|
942
|
+
|
943
|
+
n = len(b)
|
944
|
+
if maxiter is None:
|
945
|
+
maxiter = n*10
|
946
|
+
|
947
|
+
dotprod = np.vdot if np.iscomplexobj(x) else np.dot
|
948
|
+
|
949
|
+
rhotol = np.finfo(x.dtype.char).eps
|
950
|
+
betatol = rhotol
|
951
|
+
gammatol = rhotol
|
952
|
+
deltatol = rhotol
|
953
|
+
epsilontol = rhotol
|
954
|
+
xitol = rhotol
|
955
|
+
|
956
|
+
r = b - A.matvec(x) if x.any() else b.copy()
|
957
|
+
|
958
|
+
vtilde = r.copy()
|
959
|
+
y = M1.matvec(vtilde)
|
960
|
+
rho = np.linalg.norm(y)
|
961
|
+
wtilde = r.copy()
|
962
|
+
z = M2.rmatvec(wtilde)
|
963
|
+
xi = np.linalg.norm(z)
|
964
|
+
gamma, eta, theta = 1, -1, 0
|
965
|
+
v = np.empty_like(vtilde)
|
966
|
+
w = np.empty_like(wtilde)
|
967
|
+
|
968
|
+
# Dummy values to initialize vars, silence linter warnings
|
969
|
+
epsilon, q, d, p, s = None, None, None, None, None
|
970
|
+
|
971
|
+
for iteration in range(maxiter):
|
972
|
+
if np.linalg.norm(r) < atol: # Are we done?
|
973
|
+
return x, 0
|
974
|
+
if np.abs(rho) < rhotol: # rho breakdown
|
975
|
+
return x, -10
|
976
|
+
if np.abs(xi) < xitol: # xi breakdown
|
977
|
+
return x, -15
|
978
|
+
|
979
|
+
v[:] = vtilde[:]
|
980
|
+
v *= (1 / rho)
|
981
|
+
y *= (1 / rho)
|
982
|
+
w[:] = wtilde[:]
|
983
|
+
w *= (1 / xi)
|
984
|
+
z *= (1 / xi)
|
985
|
+
delta = dotprod(z, y)
|
986
|
+
|
987
|
+
if np.abs(delta) < deltatol: # delta breakdown
|
988
|
+
return x, -13
|
989
|
+
|
990
|
+
ytilde = M2.matvec(y)
|
991
|
+
ztilde = M1.rmatvec(z)
|
992
|
+
|
993
|
+
if iteration > 0:
|
994
|
+
ytilde -= (xi * delta / epsilon) * p
|
995
|
+
p[:] = ytilde[:]
|
996
|
+
ztilde -= (rho * (delta / epsilon).conj()) * q
|
997
|
+
q[:] = ztilde[:]
|
998
|
+
else: # First spin
|
999
|
+
p = ytilde.copy()
|
1000
|
+
q = ztilde.copy()
|
1001
|
+
|
1002
|
+
ptilde = A.matvec(p)
|
1003
|
+
epsilon = dotprod(q, ptilde)
|
1004
|
+
if np.abs(epsilon) < epsilontol: # epsilon breakdown
|
1005
|
+
return x, -14
|
1006
|
+
|
1007
|
+
beta = epsilon / delta
|
1008
|
+
if np.abs(beta) < betatol: # beta breakdown
|
1009
|
+
return x, -11
|
1010
|
+
|
1011
|
+
vtilde[:] = ptilde[:]
|
1012
|
+
vtilde -= beta*v
|
1013
|
+
y = M1.matvec(vtilde)
|
1014
|
+
|
1015
|
+
rho_prev = rho
|
1016
|
+
rho = np.linalg.norm(y)
|
1017
|
+
wtilde[:] = w[:]
|
1018
|
+
wtilde *= - beta.conj()
|
1019
|
+
wtilde += A.rmatvec(q)
|
1020
|
+
z = M2.rmatvec(wtilde)
|
1021
|
+
xi = np.linalg.norm(z)
|
1022
|
+
gamma_prev = gamma
|
1023
|
+
theta_prev = theta
|
1024
|
+
theta = rho / (gamma_prev * np.abs(beta))
|
1025
|
+
gamma = 1 / np.sqrt(1 + theta**2)
|
1026
|
+
|
1027
|
+
if np.abs(gamma) < gammatol: # gamma breakdown
|
1028
|
+
return x, -12
|
1029
|
+
|
1030
|
+
eta *= -(rho_prev / beta) * (gamma / gamma_prev)**2
|
1031
|
+
|
1032
|
+
if iteration > 0:
|
1033
|
+
d *= (theta_prev * gamma) ** 2
|
1034
|
+
d += eta*p
|
1035
|
+
s *= (theta_prev * gamma) ** 2
|
1036
|
+
s += eta*ptilde
|
1037
|
+
else:
|
1038
|
+
d = p.copy()
|
1039
|
+
d *= eta
|
1040
|
+
s = ptilde.copy()
|
1041
|
+
s *= eta
|
1042
|
+
|
1043
|
+
x += d
|
1044
|
+
r -= s
|
1045
|
+
|
1046
|
+
if callback:
|
1047
|
+
callback(x)
|
1048
|
+
|
1049
|
+
else: # for loop exhausted
|
1050
|
+
# Return incomplete progress
|
1051
|
+
return x, maxiter
|