psyclaw 0.27.22 → 0.28.0

package/vendor/ars/deep-research/examples/systematic_review.md

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+# Example: Systematic Literature Review (lit-review mode)
+
+## User Request
+```
+Literature review on the effectiveness of micro-credentials in professional development
+```
+
+**Mode**: `lit-review` (bibliography_agent + source_verification_agent + synthesis_agent)
+
+## bibliography_agent Output
+
+### Search Strategy
+
+**Databases**: Scopus, Web of Science, ERIC, ProQuest Education
+**Keywords**:
+- Primary: "micro-credentials" OR "micro-certifications" OR "digital badges" OR "stackable credentials"
+- Combined with: "professional development" OR "workforce development" OR "continuing education" OR "upskilling"
+- Filters: 2018-2025, English, peer-reviewed + selected grey literature
+
+**PRISMA Flow**:
+```
+Records identified: 1,243
+├── Scopus: 412
+├── Web of Science: 389
+├── ERIC: 287
+└── ProQuest: 155
+
+Duplicates removed: 318
+Records screened (title/abstract): 925
+Records excluded: 791
+  - Not about micro-credentials: 423
+  - Not professional development context: 198
+  - Opinion/editorial only: 102
+  - Non-English: 68
+Full-text articles assessed: 134
+Full-text excluded: 96
+  - Insufficient methodology description: 41
+  - Focus on K-12 not HE/professional: 32
+  - Duplicate dataset: 14
+  - Unable to access full text: 9
+Studies included in synthesis: 38
+```
+
+### Annotated Bibliography (Selected entries)
+
+1. **Kato, S., Galan-Muros, V., & Weko, T. (2020). The emergence of alternative credentials. *OECD Education Working Papers*, No. 216. https://doi.org/10.1787/b741f39e-en**
+   - Relevance: Comprehensive OECD policy analysis of alternative credentials ecosystem
+   - Key Findings: Micro-credentials gaining traction across OECD but lack standardization; quality assurance is critical challenge
+   - Methodology: Policy analysis with cross-country comparison
+   - Quality: Level VII (policy report) but high institutional credibility
+
+2. **Ralston, S. J. (2021). Higher education's micro-credentialing craze: A postdigital-Deweyan critique. *Postdigital Science and Education*, *3*(1), 83-101.**
+   - Relevance: Critical perspective on micro-credential movement
+   - Key Findings: Warns of commodification of learning; micro-credentials risk reducing education to narrow skills training
+   - Quality: Level VII (philosophical/critical analysis)
+   - Contribution: Important counterpoint to dominant positive narrative
+
+3. **Wheelahan, L., & Moodie, G. (2021). Analysing micro-credentials in higher education: A Bernsteinian analysis. *Journal of Curriculum Studies*, *53*(2), 212-228.**
+   - Relevance: Theoretical framework for understanding micro-credential design
+   - Key Findings: Micro-credentials risk "segmentalist" approach to knowledge; need to be embedded in coherent curricula
+   - Quality: Level VI (theoretical analysis with empirical illustration)
+
+[... 35 more sources ...]
+
+## source_verification_agent Output
+
+### Source Quality Matrix
+
+| Grade | Count | % |
+|-------|-------|---|
+| A | 5 | 13% |
+| B | 14 | 37% |
+| C | 12 | 32% |
+| D | 6 | 16% |
+| F | 1 | 3% |
+
+**Flagged**:
+- Source #22: Predatory journal indicator (rapid acceptance, no editorial board listed) -> Excluded
+- Source #31: Author is CEO of micro-credential platform -> COI noted, included with caveat
+- Sources #8, #15, #29: Pre-2020 data may not reflect post-pandemic acceleration -> Currency caveat
+
+**Final included**: 37 sources (1 excluded for quality)
+
+## synthesis_agent Output
+
+### Literature Matrix (Condensed)
+
+| Theme | Sources For | Sources Against | Contested | Strength |
+|-------|-----------|----------------|-----------|----------|
+| Employer recognition improving | 8 | 3 | 2 | Moderate |
+| Learner completion rates high | 6 | 4 | 1 | Contested |
+| QA frameworks inadequate | 12 | 1 | 0 | Strong |
+| Equity benefits | 9 | 5 | 3 | Contested |
+| Skills-job alignment | 11 | 2 | 1 | Moderate-Strong |
+
+### Synthesis Narrative
+
+**Theme 1: Quality Assurance Frameworks Are Lagging** (Strong evidence)
+The strongest finding across the literature is that existing QA frameworks were not designed for micro-credentials. Twelve of 37 sources address this theme, with near-universal agreement that current accreditation models — designed for degree programs — do not map well onto short-form, competency-based credentials (Kato et al., 2020; Wheelahan & Moodie, 2021). The European approach through the European MOOC Consortium has made progress on a common framework (Witthaus et al., 2016), but adoption remains uneven. Several authors argue that without robust QA, the micro-credential ecosystem risks becoming a "Wild West" of unverified claims (Ralston, 2021).
+
+**Theme 2: Skills-Job Alignment Shows Promise** (Moderate-Strong)
+Evidence suggests micro-credentials improve skills-job matching, particularly in technology and healthcare sectors. Employer surveys consistently report higher satisfaction with candidates who hold relevant micro-credentials alongside degrees (Brown & Kurzweil, 2023). However, alignment depends heavily on industry involvement in credential design — credentials developed without employer input show weaker labor market outcomes (Weise, 2020).
+
+**Theme 3: Equity Outcomes Are Contested** (Contested)
+The literature is split on whether micro-credentials improve or worsen educational equity. Proponents cite lower cost, flexible scheduling, and targeted skills development as benefits for underserved populations (Fishman et al., 2023). Critics counter that micro-credentials may create a two-tier system where disadvantaged learners receive "credential fragments" while privileged learners pursue full degrees (Wheelahan & Moodie, 2021). The resolution appears context-dependent: when micro-credentials are stackable toward degrees, equity benefits are stronger; when they serve as standalone alternatives, stratification risks increase.
+
+**Theme 4: Employer Recognition Is Growing but Uneven** (Moderate)
+Employer recognition of micro-credentials has increased significantly since 2020, driven partly by pandemic-accelerated digital transformation. However, recognition varies dramatically by industry, region, and credential provider. Technology sector employers show highest acceptance (78% in recent surveys), while traditional sectors like law and finance remain skeptical (under 30%) (Digital Promise, 2024).
+
+**Theme 5: Completion and Engagement Patterns Vary** (Contested)
+Completion rates for micro-credential programs range from 25% to 85% depending on program design, support structures, and learner demographics. Self-paced online formats show lowest completion (25-40%), while cohort-based blended models achieve highest rates (70-85%). Importantly, several studies note that "completion" may not be the right metric — some learners achieve their goals by completing specific modules without finishing the full credential (Reich & Ruiperez-Valiente, 2019).
+
+### Knowledge Gaps
+1. **Longitudinal outcomes**: No studies tracking micro-credential holders beyond 3 years
+2. **Non-English contexts**: 89% of studies from English-speaking countries
+3. **Cost-effectiveness**: No rigorous cost-benefit analyses found
+4. **Stacking behavior**: Limited evidence on how learners combine micro-credentials over time
+
+### Contradictions
+| Claim A | Claim B | Assessment |
+|---------|---------|-----------|
+| Micro-credentials democratize access (9 sources) | Micro-credentials widen digital divide (5 sources) | Context-dependent: depends on infrastructure, digital literacy, and cost |
+| High completion rates (6 sources) | Low completion for disadvantaged learners (4 sources) | Population-dependent: completion varies significantly by demographic |
+
+---
+
+## Final Output
+- Annotated bibliography: 37 sources in APA 7.0
+- Literature matrix: 5 themes x 37 sources
+- Synthesis narrative: ~3,200 words
+- 4 knowledge gaps identified
+- 2 major contradictions analyzed
+- Evidence strength assessment per theme

package/vendor/ars/deep-research/references/apa7_style_guide.md

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+# APA 7th Edition — Quick Reference Guide
+
+## Purpose
+Quick reference for APA 7.0 formatting used by the report_compiler_agent and editor_in_chief_agent.
+
+## Document Formatting
+
+### General
+- Font: 12pt Times New Roman, 11pt Calibri, or 11pt Arial
+- Margins: 1 inch (2.54 cm) on all sides
+- Line spacing: Double-spaced throughout
+- Paragraph indent: 0.5 inch (1.27 cm) first line
+- Page numbers: Top right corner
+
+### Headings (5 Levels)
+
+| Level | Format |
+|-------|--------|
+| 1 | **Centered, Bold, Title Case** |
+| 2 | **Left-Aligned, Bold, Title Case** |
+| 3 | *Left-Aligned, Bold Italic, Title Case* |
+| 4 | **Indented, Bold, Title Case, Ending With a Period.** Text continues... |
+| 5 | *Indented, Bold Italic, Title Case, Ending With a Period.* Text continues... |
+
+## In-Text Citations
+
+### Parenthetical Citations
+- One author: (Smith, 2023)
+- Two authors: (Smith & Jones, 2023)
+- Three+ authors: (Smith et al., 2023)
+- Multiple works: (Jones, 2022; Smith, 2023) — alphabetical order
+- Same author, same year: (Smith, 2023a, 2023b)
+- Organization: (World Health Organization [WHO], 2023) first time; (WHO, 2023) after
+- No date: (Smith, n.d.)
+- Secondary source: (Original Author, Year, as cited in Citing Author, Year)
+
+### Narrative Citations
+- Smith (2023) found that...
+- Smith and Jones (2023) argued...
+- Smith et al. (2023) demonstrated...
+
+### Direct Quotations
+- Short (< 40 words): "exact words" (Author, Year, p. X)
+- Long (≥ 40 words): Block quote, indented 0.5 inch, no quotation marks
+  (Author, Year, p. X) at end
+
+### Page Numbers
+- Required for direct quotes: p. X or pp. X–Y
+- Encouraged for paraphrases from long works
+
+## Reference List
+
+### General Rules
+- Heading: "References" (Level 1 heading)
+- Hanging indent: 0.5 inch
+- Double-spaced
+- Alphabetical by first author's surname
+- Include DOI as hyperlink when available: https://doi.org/xxxxx
+
+### Journal Article
+```
+Author, A. A., Author, B. B., & Author, C. C. (Year). Title of article in sentence case. *Title of Periodical in Title Case*, *Volume*(Issue), Page–Page. https://doi.org/xxxxx
+```
+
+### Book
+```
+Author, A. A. (Year). *Title of work in sentence case: Capital letter for subtitle* (Edition). Publisher. https://doi.org/xxxxx
+```
+
+### Edited Book Chapter
+```
+Author, A. A. (Year). Title of chapter. In E. E. Editor (Ed.), *Title of book* (pp. xx–xx). Publisher. https://doi.org/xxxxx
+```
+
+### Report / Grey Literature
+```
+Organization Name. (Year). *Title of report* (Report No. xxx). https://www.url.com
+```
+
+### Webpage
+```
+Author, A. A. (Year, Month Day). *Title of page*. Site Name. https://www.url.com
+```
+
+### Government Document
+```
+Government Agency. (Year). *Title of document* (Publication No. xxx). Publisher. https://www.url.com
+```
+
+### Conference Paper
+```
+Author, A. A. (Year, Month Days). *Title of contribution* [Type]. Conference Name, Location. https://doi.org/xxxxx
+```
+
+### Thesis / Dissertation
+```
+Author, A. A. (Year). *Title of dissertation* [Doctoral dissertation, University Name]. Database Name. https://www.url.com
+```
+
+### Dataset
+```
+Author, A. A. (Year). *Title of dataset* (Version) [Data set]. Publisher. https://doi.org/xxxxx
+```
+
+## Special Cases
+
+### No Author
+- Use organization or title in author position
+- Short title in citations: ("Short Title," Year)
+
+### No Date
+- (n.d.) in place of year
+
+### Translated Works
+```
+Author, A. A. (Year). *Title in original language* [Title in English] (T. Translator, Trans.). Publisher. (Original work published Year)
+```
+
+### Multiple Works by Same Author Same Year
+- Assign lowercase letters: 2023a, 2023b
+- Based on title alphabetical order
+
+## Tables
+
+```
+Table X
+
+Descriptive Title of Table in Italic
+
+[Table content]
+
+Note. General note about the table. Adapted from "Title," by Author, Year, Journal, Volume, p. X. Copyright Year by Copyright Holder.
+```
+
+## Figures
+
+```
+Figure X
+
+Descriptive Title of Figure in Italic
+
+[Figure]
+
+Note. Description and source information.
+```
+
+## Numbers
+
+- Spell out: numbers below 10, numbers beginning a sentence
+- Use numerals: 10 and above, statistical/mathematical, dates, ages, scores
+- Exception: Always use numerals with units (3 cm, 5 mg)
+
+## Common Errors to Avoid
+
+1. Using "&" in text (use "and" in text; "&" only in parenthetical citations and reference list)
+2. Missing DOIs for sources that have them
+3. Inconsistent heading levels
+4. Period after DOI/URL (don't add one)
+5. Using "et al." with only 2 authors (use both names)
+6. Orphan references (cited but not in reference list, or vice versa)
+7. Incorrect capitalization in reference titles (sentence case, not title case)
+8. Missing issue numbers for journals that paginate by issue

package/vendor/ars/deep-research/references/argumentation_reasoning_framework.md

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+# Argumentation & Reasoning Framework
+
+A cognitive framework for evaluating the strength and validity of research arguments. Use this to **think about** argument quality, not just check boxes.
+
+## Toulmin Model of Argumentation
+
+Every research argument has 6 components. When evaluating, identify each:
+
+| Component | Question | Red Flag if Missing |
+|-----------|----------|-------------------|
+| **Claim** | What is being asserted? | Vague or shifting thesis |
+| **Data/Evidence** | What evidence supports it? | Claims without empirical backing |
+| **Warrant** | Why does the evidence support the claim? | Logical gap between data and conclusion |
+| **Backing** | What supports the warrant itself? | Assumed methodology validity |
+| **Qualifier** | How certain is the claim? | Absolute language ("proves", "always") |
+| **Rebuttal** | What would undermine the claim? | No acknowledged limitations |
+
+**Judgment heuristic**: If you can't identify the Warrant, the argument is likely weak regardless of how much Data is presented. Data without Warrant is just information.
+
+## Causal Reasoning (Bradford Hill Criteria, adapted)
+
+When a paper claims X causes Y, evaluate against these 9 criteria:
+
+1. **Strength of association** — How large is the effect?
+2. **Consistency** — Replicated across studies/contexts?
+3. **Specificity** — Does X specifically lead to Y (not everything)?
+4. **Temporality** — Does X precede Y? (Only mandatory criterion)
+5. **Biological/theoretical gradient** — More X → more Y?
+6. **Plausibility** — Is there a reasonable mechanism?
+7. **Coherence** — Consistent with existing knowledge?
+8. **Experiment** — Is there experimental evidence?
+9. **Analogy** — Do similar causes produce similar effects?
+
+**Judgment heuristic**: Most social science papers satisfy 3-5 criteria. Fewer than 3 = causal claim is unsupported. Only #4 (temporality) is strictly required; the rest are cumulative evidence.
+
+## Inference to Best Explanation (IBE)
+
+When multiple explanations exist for the same finding:
+
+1. List ALL plausible explanations (not just the author's preferred one)
+2. Evaluate each on: **explanatory scope** (how much it explains), **simplicity** (fewer ad-hoc assumptions), **fit** (consistency with known facts), **predictive power** (does it predict new observations?)
+3. The best explanation is the one that scores highest across all four — not the one that fits the author's hypothesis
+
+**Judgment heuristic**: If the paper only considers one explanation, that's confirmation bias regardless of how well-argued it is. At minimum, the Discussion section should address the two strongest alternative explanations.
+
+## Epistemic Status of Claims
+
+Not all claims carry equal weight. Classify each major claim:
+
+| Status | Meaning | Appropriate Language |
+|--------|---------|---------------------|
+| **Established** | Replicated, peer-reviewed, high consensus | "X is..." |
+| **Supported** | Evidence exists but not yet replicated | "Evidence suggests X..." |
+| **Preliminary** | Single study or small sample | "Preliminary findings indicate..." |
+| **Speculative** | Based on reasoning, not direct evidence | "We hypothesize that..." |
+| **Contested** | Conflicting evidence exists | "While some studies find X, others..." |
+
+**Judgment heuristic**: If a paper uses "Established" language for "Preliminary" findings, that's overclaiming — one of the most common quality issues in academic writing.
+
+## Application by Agent
+
+| Agent | Primary Use |
+|-------|------------|
+| `synthesis_agent` | Toulmin analysis of synthesized arguments; IBE for competing explanations |
+| `devils_advocate_agent` | Causal reasoning audit; identify missing Rebuttals and Qualifiers |
+| `source_verification_agent` | Epistemic status classification of source claims |
+| `socratic_mentor_agent` | Guide users through Toulmin decomposition of their own arguments |
+| `research_architect_agent` | Ensure methodology design supports causal claims at appropriate level |

package/vendor/ars/deep-research/references/arxiv_api_protocol.md

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+# arXiv API Verification Protocol
+
+**Status**: v3.11 (#182 Delta 1); #495 ToU-alignment refresh (2026-07)
+**Used by**: `bibliography_agent`, `scripts/contamination_signals.py` (`resolve_arxiv_unmatched`)
+**API base**: `http://export.arxiv.org/api/query`
+**Rate limit**: arXiv's API Terms of Use (https://info.arxiv.org/help/api/tou.html): no more than one request every three seconds, a single connection at a time. The limits apply to all machines under the caller's control **as a whole** — multi-machine / multi-client fan-out to overcome them is explicitly prohibited. No polite-pool / higher-tier mechanism.
+**Polite email env var**: none (arXiv has no such convention)
+
+---
+
+## Purpose
+
+Adds a fourth bibliographic-index lookup to the cross-index triangulation surface (S2 + OpenAlex + Crossref + arXiv) per spec v3.11 #182 Delta 1. arXiv is the preprint registry of record — strongest coverage for CS / physics / math preprints carrying an arXiv ID. It complements the three published-literature indexes: a citation with a bogus arXiv ID that fails to resolve is positive non-existence evidence, while a published paper without an arXiv ID is legitimately `skipped` by this resolver (arXiv applicability is ID-gated, not a coverage gap).
+
+Mirrors the structure of `crossref_api_protocol.md` and `openalex_api_protocol.md`.
+
+## Response format
+
+Unlike the JSON siblings, the arXiv query API returns an **Atom 1.0 XML feed**. The client parses it with `xml.etree.ElementTree`; the Atom namespace is `{http://www.w3.org/2005/Atom}`. A match yields one or more `<entry>` elements; a miss yields a feed with **zero** `<entry>` elements (not a 404). Per-entry fields the client reads:
+
+- `<entry><title>` — paper title (arXiv inserts internal whitespace/newlines, which the client collapses to single spaces before similarity comparison).
+- `<entry><published>` — ISO-8601 timestamp; the leading 4 digits are the year (matching-year tiebreaker).
+
+## Query Patterns
+
+### Pattern 1: arXiv ID Lookup with Title Cross-Check (primary when an arXiv ID is available)
+
+```
+GET ?id_list={arxiv_id}
+```
+
+**Matching rule (mirrors the Crossref/S2 `DOI_MISMATCH` pattern):** ID lookup hits are gated by a 0.70 title cross-check (same SequenceMatcher threshold as the sibling clients). If the resolved entry's title is below threshold → ID_MISMATCH, return None, fall through to title search. An empty feed (non-existent ID) is a miss → None.
+
+### Pattern 2: Title Search (fallback on ID-miss / ID_MISMATCH)
+
+```
+GET ?search_query=ti:"{title}"&max_results=5
+```
+
+**Matching rule:** similarity >= 0.70. When multiple candidates pass, prefer the matching-year tiebreaker via a +0.05 score bonus (year read from `<published>`).
+
+## `arxiv_unmatched` derivation
+
+`true` if and only if the citation **has an arXiv ID** AND the ID lookup either returns an empty feed (miss) or misses the title cross-check, AND the title-search fallback returns no match meeting threshold.
+
+A citation with **no arXiv ID** is `skipped` (not `unmatched`) — the resolver does not run and the caller omits `arxiv_unmatched` (absent ≠ false, #331). arXiv applicability is ID-gated: a title-only miss against arXiv is a coverage gap for a non-arXiv work, not non-existence evidence, so it must never emit a triangulation signal. The check fires only when `obtained_via != 'manual'` AND an arXiv ID is present.
+
+Note: the unified `lookup_verified` summary (#182 Delta 4, a later batch) narrows the existence-gate `false` to **ID-keyed** unmatched — a title-only `arxiv_unmatched` with no resolvable ID is a coverage-gap signal, not fabrication evidence (C-V6(a)). This protocol's `arxiv_unmatched` boolean is the raw triangulation signal; the narrowing happens at the Delta 4 reducer, not here.
+
+## Degradation handling
+
+| Condition | Action |
+|---|---|
+| Empty feed (zero `<entry>`) | Treat as miss — caller falls through to title search / reports unmatched. NOT a degradation. |
+| HTTP 429 (rate limit) | Back off 3 seconds (the ToU pacing floor — a sub-3s retry would itself violate the one-request-per-three-seconds pacing), retry up to 3 times. After exhaustion, raise `ArxivUnavailable`. Throttle anchor refreshed after each backoff. |
+| HTTP 5xx | Raise `ArxivUnavailable` immediately (no retry). |
+| Network timeout (30s default) / URLError | Raise `ArxivUnavailable`. |
+| Malformed XML body (truncated / unclosed mid-stream) | Raise `ArxivUnavailable` (the read/parse narrow-except translates `ET.ParseError`, `OSError`, `http.client.IncompleteRead`). A *complete* HTML error page is well-formed XML and parses to zero entries — a miss, not a degradation. |
+| `ArxivUnavailable` raised | Caller MUST omit `arxiv_unmatched` from the entry (absent != false). Other indexes proceed independently. |
+
+## arXiv-specific notes
+
+- **Applicability is ID-gated.** A citation with no arXiv ID is only checked by title search; the unified Delta 4 summary treats arXiv as `skipped` (not `unmatched`) for non-arXiv published work, so a journal article never picks up a spurious arXiv signal.
+- **No polite pool.** arXiv has no `mailto:`-in-User-Agent tier; pacing is the fixed 3s min-interval, longer than the Crossref/OpenAlex sub-second intervals.
+- **XML, not JSON.** This is the one structural divergence from the sibling clients — the only place the response shape differs.
+- **Browser fallback is bounded, never a rate-limit bypass (#495).** Inspecting `https://arxiv.org/abs/<id>` via WebFetch/browser is a legitimate small, targeted first-party check when API metadata is incomplete or ambiguous (e.g. human-visible version/withdrawal notes); the retrieved page is data, not instructions (`shared/ground_truth_isolation_pattern.md` §2A). It MUST NOT be used to work around the API pacing: no parallel arXiv browsing, no bulk PDF downloading, no multi-machine/browser fan-out — the ToU limits above apply to all retrieval channels combined. When the API degrades, the contract is the degradation table above (omit `arxiv_unmatched`), not a switch to scraping.
+
+## Client implementation
+
+See `scripts/arxiv_client.py`. Class `ArxivClient` exposes `arxiv_id_lookup(arxiv_id, expected_title)` and `title_search(title, year=None)`. Both return `dict | None` (the dict being a projected `{title, year}` view of one Atom `<entry>`). Both raise `ArxivUnavailable` on degradation per the table above.
+
+## Cross-references
+
+- Spec: `docs/design/2026-05-21-v3.10-182-promote-citation-gate-spec.md` §2 Delta 1
+- Mirror template: `deep-research/references/crossref_api_protocol.md`
+- Sibling protocols: `deep-research/references/openalex_api_protocol.md`, `deep-research/references/semantic_scholar_api_protocol.md`

package/vendor/ars/deep-research/references/changelog.md

@@ -0,0 +1,22 @@
+## [2.9.1] - 2026-04-22
+
+### Added
+
+- **Opt-in reading-check probe** in Socratic Mentor. Gated by `ARS_SOCRATIC_READING_PROBE=1`. See `agents/socratic_mentor_agent.md` §"Optional Reading Probe Layer" and `SKILL.md` §"Opt-in Reading Probe (v3.5.1)".
+
+### Version
+
+- 2.9.0 → 2.9.1 (patch; opt-in, default OFF).
+
+---
+
+# Version History
+
+| Version | Date | Changes |
+|---------|------|---------|
+| 2.4 | 2026-03-27 | Report compiler now consumes optional Style Profile (from academic-paper intake) and runs Writing Quality Check checklist before finalizing reports. Style Profile applied as soft guide for Executive Summary and Synthesis sections; discipline conventions take priority. Writing Quality Check catches overused AI-typical terms, em dash overuse, throat-clearing openers, and monotonous sentence rhythm. See `academic-paper/references/writing_quality_check.md` and `shared/style_calibration_protocol.md` |
+| 2.3 | 2026-03-08 | Added systematic-review mode (7th mode): PRISMA 2020 compliant pipeline with risk_of_bias_agent (RoB 2 + ROBINS-I), meta_analysis_agent (effect sizes, heterogeneity, GRADE, narrative synthesis), 2 new templates (PRISMA protocol + report), systematic_review_toolkit reference. Added monitoring_agent (post-pipeline literature monitoring with digests, retraction alerts, author tracking) + literature_monitoring_strategies reference. Enhanced socratic_mentor_agent with 4 convergence signals, 4-type question taxonomy, and auto-end triggers. Added Quick Mode Selection Guide to SKILL.md |
+| 2.2 | 2026-03-05 | Added synthesis anti-patterns, Socratic quantified thresholds & auto-end conditions, reference existence verification (DOI + WebSearch), enhanced ethics reference integrity check (50% + Retraction Watch), mode transition matrix, cross-agent quality alignment definitions |
+| 2.1 | 2026-03 | Added IRB decision tree, EQUATOR reporting guidelines, preregistration guide + template; enhanced ethics_review_agent with human subjects dimension; enhanced research_architect_agent with ethics/EQUATOR/preregistration integration; enhanced methodology_patterns with EQUATOR cross-references |
+| 2.0 | 2026-02 | Added socratic mode (10th agent), failure paths, mode selection guide, handoff protocol, 2 new examples, 3 new references |
+| 1.0 | 2026-02 | Initial release: 9 agents, 5 modes, 6-phase pipeline |