psyclaw 0.27.22 → 0.28.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1048) hide show
  1. package/README.md +11 -5
  2. package/dist/apps/panel/index.html +2 -2
  3. package/dist/src/adapters/pi/extension.js +225 -92
  4. package/dist/src/adapters/pi/extension.js.map +1 -1
  5. package/dist/src/agents/import.js +44 -32
  6. package/dist/src/agents/import.js.map +1 -1
  7. package/dist/src/analysis/hooks.d.ts +1 -0
  8. package/dist/src/analysis/hooks.js +20 -1
  9. package/dist/src/analysis/hooks.js.map +1 -1
  10. package/dist/src/ars/bridge.d.ts +20 -0
  11. package/dist/src/ars/bridge.js +132 -0
  12. package/dist/src/ars/bridge.js.map +1 -0
  13. package/dist/src/ars/contracts.d.ts +55 -0
  14. package/dist/src/ars/contracts.js +2 -0
  15. package/dist/src/ars/contracts.js.map +1 -0
  16. package/dist/src/ars/panel-plan.d.ts +4 -0
  17. package/dist/src/ars/panel-plan.js +11 -0
  18. package/dist/src/ars/panel-plan.js.map +1 -0
  19. package/dist/src/ars/pi-panel-executor.d.ts +30 -0
  20. package/dist/src/ars/pi-panel-executor.js +140 -0
  21. package/dist/src/ars/pi-panel-executor.js.map +1 -0
  22. package/dist/src/ars/profile.d.ts +36 -0
  23. package/dist/src/ars/profile.js +119 -0
  24. package/dist/src/ars/profile.js.map +1 -0
  25. package/dist/src/ars/re-review.d.ts +22 -0
  26. package/dist/src/ars/re-review.js +172 -0
  27. package/dist/src/ars/re-review.js.map +1 -0
  28. package/dist/src/branding.d.ts +2 -4
  29. package/dist/src/branding.js +3 -5
  30. package/dist/src/branding.js.map +1 -1
  31. package/dist/src/bundled-tools.d.ts +3 -0
  32. package/dist/src/bundled-tools.js +21 -0
  33. package/dist/src/bundled-tools.js.map +1 -0
  34. package/dist/src/chat.js +6 -5
  35. package/dist/src/chat.js.map +1 -1
  36. package/dist/src/creation/contracts.d.ts +38 -0
  37. package/dist/src/creation/contracts.js +2 -0
  38. package/dist/src/creation/contracts.js.map +1 -0
  39. package/dist/src/creation/service.d.ts +7 -0
  40. package/dist/src/creation/service.js +196 -0
  41. package/dist/src/creation/service.js.map +1 -0
  42. package/dist/src/index.d.ts +10 -0
  43. package/dist/src/index.js +10 -0
  44. package/dist/src/index.js.map +1 -1
  45. package/dist/src/install/installer.js +32 -10
  46. package/dist/src/install/installer.js.map +1 -1
  47. package/dist/src/orchestration/personas.d.ts +15 -0
  48. package/dist/src/orchestration/personas.js +51 -0
  49. package/dist/src/orchestration/personas.js.map +1 -0
  50. package/dist/src/orchestration/pi-executor.d.ts +1 -0
  51. package/dist/src/orchestration/pi-executor.js +1 -1
  52. package/dist/src/orchestration/pi-executor.js.map +1 -1
  53. package/dist/src/panel/extension.js +29 -8
  54. package/dist/src/panel/extension.js.map +1 -1
  55. package/dist/src/panel/server.js +14 -5
  56. package/dist/src/panel/server.js.map +1 -1
  57. package/dist/src/project/paths.d.ts +3 -0
  58. package/dist/src/project/paths.js +7 -0
  59. package/dist/src/project/paths.js.map +1 -1
  60. package/dist/src/rules/user-rules.d.ts +8 -0
  61. package/dist/src/rules/user-rules.js +36 -0
  62. package/dist/src/rules/user-rules.js.map +1 -0
  63. package/dist/src/skills/contracts.d.ts +4 -4
  64. package/dist/src/skills/recommended.js +1 -1
  65. package/dist/src/skills/registry.js +49 -28
  66. package/dist/src/skills/registry.js.map +1 -1
  67. package/dist/src/style/cli-ui.js +0 -1
  68. package/dist/src/style/cli-ui.js.map +1 -1
  69. package/package.json +14 -3
  70. package/scripts/rebrand-pi.mjs +6 -0
  71. package/skills/recommended/catalog.json +2 -11
  72. package/vendor/ars/.claude/CLAUDE.md +371 -0
  73. package/vendor/ars/.command-invariants.toml +24 -0
  74. package/vendor/ars/CITATION.cff +35 -0
  75. package/vendor/ars/LICENSE +417 -0
  76. package/vendor/ars/MODE_REGISTRY.md +76 -0
  77. package/vendor/ars/NOTICE.md +26 -0
  78. package/vendor/ars/POSITIONING.md +99 -0
  79. package/vendor/ars/PSYCLAW_SOURCE.json +10 -0
  80. package/vendor/ars/README.md +751 -0
  81. package/vendor/ars/SECURITY.md +52 -0
  82. package/vendor/ars/THIRD_PARTY.md +70 -0
  83. package/vendor/ars/academic-paper/SKILL.md +542 -0
  84. package/vendor/ars/academic-paper/agents/abstract_bilingual_agent.md +171 -0
  85. package/vendor/ars/academic-paper/agents/argument_builder_agent.md +276 -0
  86. package/vendor/ars/academic-paper/agents/citation_compliance_agent.md +422 -0
  87. package/vendor/ars/academic-paper/agents/draft_writer_agent.md +656 -0
  88. package/vendor/ars/academic-paper/agents/formatter_agent.md +999 -0
  89. package/vendor/ars/academic-paper/agents/intake_agent.md +393 -0
  90. package/vendor/ars/academic-paper/agents/literature_strategist_agent.md +626 -0
  91. package/vendor/ars/academic-paper/agents/peer_reviewer_agent.md +516 -0
  92. package/vendor/ars/academic-paper/agents/revision_coach_agent.md +334 -0
  93. package/vendor/ars/academic-paper/agents/socratic_mentor_agent.md +527 -0
  94. package/vendor/ars/academic-paper/agents/structure_architect_agent.md +401 -0
  95. package/vendor/ars/academic-paper/agents/visualization_agent.md +441 -0
  96. package/vendor/ars/academic-paper/examples/chinese_paper_example.md +278 -0
  97. package/vendor/ars/academic-paper/examples/clinical_citation_verification_checklist.md +95 -0
  98. package/vendor/ars/academic-paper/examples/clinical_epistemic_status_example.md +100 -0
  99. package/vendor/ars/academic-paper/examples/commitment_ledger_example.md +147 -0
  100. package/vendor/ars/academic-paper/examples/imrad_hei_example.md +234 -0
  101. package/vendor/ars/academic-paper/examples/literature_review_example.md +260 -0
  102. package/vendor/ars/academic-paper/examples/plan_mode_guided_writing.md +600 -0
  103. package/vendor/ars/academic-paper/examples/revision_mode_example.md +344 -0
  104. package/vendor/ars/academic-paper/examples/revision_recovery_example.md +506 -0
  105. package/vendor/ars/academic-paper/examples/version_family_reconciliation_example.md +89 -0
  106. package/vendor/ars/academic-paper/references/abstract_writing_guide.md +169 -0
  107. package/vendor/ars/academic-paper/references/academic_writing_style.md +188 -0
  108. package/vendor/ars/academic-paper/references/anti_leakage_protocol.md +83 -0
  109. package/vendor/ars/academic-paper/references/apa7_chinese_citation_guide.md +364 -0
  110. package/vendor/ars/academic-paper/references/apa7_extended_guide.md +198 -0
  111. package/vendor/ars/academic-paper/references/changelog.md +11 -0
  112. package/vendor/ars/academic-paper/references/citation_format_switcher.md +228 -0
  113. package/vendor/ars/academic-paper/references/committee_correspondence_protocol.md +158 -0
  114. package/vendor/ars/academic-paper/references/credit_authorship_guide.md +308 -0
  115. package/vendor/ars/academic-paper/references/disclosure_mode_protocol.md +478 -0
  116. package/vendor/ars/academic-paper/references/domain_evidence_profiles.md +38 -0
  117. package/vendor/ars/academic-paper/references/failure_paths.md +349 -0
  118. package/vendor/ars/academic-paper/references/funding_statement_guide.md +319 -0
  119. package/vendor/ars/academic-paper/references/hei_domain_glossary.md +169 -0
  120. package/vendor/ars/academic-paper/references/intro_title_rhetoric_guide.md +114 -0
  121. package/vendor/ars/academic-paper/references/journal_submission_guide.md +249 -0
  122. package/vendor/ars/academic-paper/references/latex_template_reference.md +378 -0
  123. package/vendor/ars/academic-paper/references/mode_selection_guide.md +378 -0
  124. package/vendor/ars/academic-paper/references/paper_structure_patterns.md +330 -0
  125. package/vendor/ars/academic-paper/references/plan_mode_protocol.md +112 -0
  126. package/vendor/ars/academic-paper/references/policy_anchor_disclosure_protocol.md +200 -0
  127. package/vendor/ars/academic-paper/references/policy_anchor_table.md +157 -0
  128. package/vendor/ars/academic-paper/references/revision_patch_protocol.md +173 -0
  129. package/vendor/ars/academic-paper/references/statistical_visualization_standards.md +750 -0
  130. package/vendor/ars/academic-paper/references/venue_disclosure_policies.md +259 -0
  131. package/vendor/ars/academic-paper/references/vlm_figure_verification.md +126 -0
  132. package/vendor/ars/academic-paper/references/workflow_phase_details.md +135 -0
  133. package/vendor/ars/academic-paper/references/writing_judgment_framework.md +59 -0
  134. package/vendor/ars/academic-paper/references/writing_quality_check.md +173 -0
  135. package/vendor/ars/academic-paper/templates/bilingual_abstract_template.md +78 -0
  136. package/vendor/ars/academic-paper/templates/case_study_template.md +129 -0
  137. package/vendor/ars/academic-paper/templates/conference_paper_template.md +108 -0
  138. package/vendor/ars/academic-paper/templates/credit_statement_template.md +132 -0
  139. package/vendor/ars/academic-paper/templates/funding_statement_template.md +290 -0
  140. package/vendor/ars/academic-paper/templates/imrad_template.md +183 -0
  141. package/vendor/ars/academic-paper/templates/latex_article_template.tex +199 -0
  142. package/vendor/ars/academic-paper/templates/literature_review_template.md +135 -0
  143. package/vendor/ars/academic-paper/templates/policy_brief_template.md +139 -0
  144. package/vendor/ars/academic-paper/templates/revision_tracking_template.md +199 -0
  145. package/vendor/ars/academic-paper/templates/theoretical_paper_template.md +119 -0
  146. package/vendor/ars/academic-paper-reviewer/SKILL.md +491 -0
  147. package/vendor/ars/academic-paper-reviewer/agents/devils_advocate_reviewer_agent.md +443 -0
  148. package/vendor/ars/academic-paper-reviewer/agents/domain_reviewer_agent.md +412 -0
  149. package/vendor/ars/academic-paper-reviewer/agents/editorial_synthesizer_agent.md +478 -0
  150. package/vendor/ars/academic-paper-reviewer/agents/eic_agent.md +339 -0
  151. package/vendor/ars/academic-paper-reviewer/agents/field_analyst_agent.md +221 -0
  152. package/vendor/ars/academic-paper-reviewer/agents/methodology_reviewer_agent.md +449 -0
  153. package/vendor/ars/academic-paper-reviewer/agents/perspective_reviewer_agent.md +427 -0
  154. package/vendor/ars/academic-paper-reviewer/examples/hei_paper_review_example.md +391 -0
  155. package/vendor/ars/academic-paper-reviewer/examples/interdisciplinary_review_example.md +299 -0
  156. package/vendor/ars/academic-paper-reviewer/examples/subclaim_decomposition_example.md +80 -0
  157. package/vendor/ars/academic-paper-reviewer/references/calibration_mode_protocol.md +256 -0
  158. package/vendor/ars/academic-paper-reviewer/references/changelog.md +10 -0
  159. package/vendor/ars/academic-paper-reviewer/references/editorial_decision_standards.md +236 -0
  160. package/vendor/ars/academic-paper-reviewer/references/guided_mode_protocol.md +34 -0
  161. package/vendor/ars/academic-paper-reviewer/references/integration_guide.md +15 -0
  162. package/vendor/ars/academic-paper-reviewer/references/quality_rubrics.md +84 -0
  163. package/vendor/ars/academic-paper-reviewer/references/re_review_mode_protocol.md +340 -0
  164. package/vendor/ars/academic-paper-reviewer/references/review_criteria_framework.md +98 -0
  165. package/vendor/ars/academic-paper-reviewer/references/review_panel_provenance_protocol.md +197 -0
  166. package/vendor/ars/academic-paper-reviewer/references/review_quality_thinking.md +58 -0
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  169. package/vendor/ars/academic-paper-reviewer/references/statistical_reporting_standards.md +505 -0
  170. package/vendor/ars/academic-paper-reviewer/references/top_journals_by_field.md +206 -0
  171. package/vendor/ars/academic-paper-reviewer/templates/editorial_decision_template.md +235 -0
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  175. package/vendor/ars/academic-pipeline/agents/claim_ref_alignment_audit_agent.md +382 -0
  176. package/vendor/ars/academic-pipeline/agents/collaboration_depth_agent.md +164 -0
  177. package/vendor/ars/academic-pipeline/agents/integrity_verification_agent.md +870 -0
  178. package/vendor/ars/academic-pipeline/agents/pipeline_orchestrator_agent.md +1379 -0
  179. package/vendor/ars/academic-pipeline/agents/state_tracker_agent.md +622 -0
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  181. package/vendor/ars/academic-pipeline/examples/integrity_failure_recovery.md +389 -0
  182. package/vendor/ars/academic-pipeline/examples/mid_entry_example.md +414 -0
  183. package/vendor/ars/academic-pipeline/references/adapters/.gitkeep +0 -0
  184. package/vendor/ars/academic-pipeline/references/adapters/overview.md +153 -0
  185. package/vendor/ars/academic-pipeline/references/ai_research_failure_modes.md +185 -0
  186. package/vendor/ars/academic-pipeline/references/changelog.md +14 -0
  187. package/vendor/ars/academic-pipeline/references/claim_audit_calibration_protocol.md +175 -0
  188. package/vendor/ars/academic-pipeline/references/claim_verification_protocol.md +282 -0
  189. package/vendor/ars/academic-pipeline/references/external_review_protocol.md +131 -0
  190. package/vendor/ars/academic-pipeline/references/integrity_review_protocol.md +110 -0
  191. package/vendor/ars/academic-pipeline/references/literature_corpus_consumers.md +193 -0
  192. package/vendor/ars/academic-pipeline/references/mode_advisor.md +135 -0
  193. package/vendor/ars/academic-pipeline/references/passport_as_reset_boundary.md +132 -0
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  204. package/vendor/ars/agents/report_compiler_agent.md +341 -0
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  207. package/vendor/ars/commands/ars-3w.md +10 -0
  208. package/vendor/ars/commands/ars-abstract.md +10 -0
  209. package/vendor/ars/commands/ars-cache-invalidate.md +20 -0
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  213. package/vendor/ars/commands/ars-full.md +9 -0
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@@ -0,0 +1,85 @@
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+ #!/usr/bin/env python3
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+ """Citation verification summary reducer (Delta 4) — SINGLE SOURCE OF TRUTH.
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+
4
+ Reduces per-resolver outcomes to the 3-class `lookup_verified` value using the
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+ v3.11 narrowed-false definition (C-V6(a)): `false` requires at least one
6
+ ID-keyed unmatched (a DOI/arXiv ID that provably fails to resolve = fabrication
7
+ evidence); a title-only unmatched (no resolvable identifier to key on) is a
8
+ coverage gap and reduces to `unresolvable`, never `false`.
9
+
10
+ run_evals.py imports `reduce_lookup_verified` from here; there is exactly one
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+ reducer implementation in the repo (the old un-narrowed copy in run_evals.py
12
+ was removed when this landed).
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+
14
+ OQ-5 recall limit (user-facing surfacing deferred). The narrowed-false rule
15
+ means a fabricated citation that carries NO resolvable identifier (no DOI /
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+ arXiv ID, only a bogus title) reduces to `unresolvable`, NOT `false`, so the
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+ citation-existence gate does not block it — it is indistinguishable from a
18
+ legitimately unindexed (regional / non-English / pre-digital) paper. This is an
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+ accepted recall limit, caught instead by the v3.8 claim-faithfulness audit +
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+ human review. The user-facing explanation of this limit (in docs/ARCHITECTURE.md
21
+ and the user guide) and the policy that consumes this verdict
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+ (`terminal_policies.citation_existence`, enum {advisory, strict}) both land with
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+ the Delta 3 / C-V6 policy batch — this data-layer batch only computes the
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+ verdict; it does not gate on it. Gold fixture 051 (the OQ-5 by-design
25
+ false-negative: a no-identifier fabrication) pins that a title-only unmatched
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+ reduces to unresolvable, never false. The absent genuine all-resolver-unmatched
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+ canary is #250's accepted corpus-representativeness limit, not a client-test
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+ gap; #431/#432 cover title-match behavior directly and there is no current
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+ gold-tuple action item.
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+
31
+ Spec: docs/design/2026-05-21-v3.10-182-promote-citation-gate-spec.md
32
+ §2 Delta 4 + §0(4a) + INVARIANT C-V6(a).
33
+ """
34
+ from __future__ import annotations
35
+
36
+ from typing import Any, Mapping
37
+
38
+ STATUS_MATCHED = "matched"
39
+ STATUS_UNMATCHED = "unmatched"
40
+ STATUS_UNREACHABLE = "unreachable"
41
+ STATUS_SKIPPED = "skipped"
42
+
43
+ QUERIED_BY_ID = "id"
44
+
45
+
46
+ def reduce_lookup_verified(resolver_outcomes: Mapping[str, Any]) -> str:
47
+ """Reduce per-resolver outcomes to a 3-class lookup_verified value.
48
+
49
+ Each value in `resolver_outcomes` is a dict with at least `status`, and
50
+ (for unmatched rows) `queried_by` ∈ {'id', 'title', None}.
51
+
52
+ Rules (symmetric 3-class; `unresolvable` is NEVER collapsed into `false`):
53
+
54
+ * `skipped` outcomes are EXCLUDED from classification (resolver
55
+ applicability / policy, not adjudication). "applicable" = not skipped.
56
+ * `true` iff >=1 applicable resolver is `matched` (matched WINS — true even
57
+ if another applicable resolver is `unmatched`).
58
+ * `false` (v3.11 narrowed, C-V6(a)) iff NO applicable resolver is `matched`
59
+ AND >=1 applicable resolver is an **ID-keyed** `unmatched`
60
+ (status=unmatched AND queried_by='id'). A bogus DOI/arXiv ID that
61
+ provably fails to resolve is fabrication evidence. Anti-fabrication bias:
62
+ one ID-keyed unmatched stands even alongside an `unreachable` (a transient
63
+ outage does not cancel positive non-existence evidence).
64
+ * `unresolvable` otherwise — every applicable resolver `unreachable` (total
65
+ outage), OR every resolver `skipped` (empty adjudicating set, manual
66
+ exempt), OR the only negative signals are title-only `unmatched`
67
+ (queried_by != 'id' — no resolvable identifier to key on = the
68
+ coverage-safe class for a potentially real-but-unindexed paper;
69
+ C-V6(a)/(f) + OQ-5 by-design FN). The static fixture is not claimed to be
70
+ a representative genuine unindexed work (#250).
71
+ """
72
+ outcomes = [v or {} for v in resolver_outcomes.values()]
73
+ applicable = [o for o in outcomes if o.get("status") != STATUS_SKIPPED]
74
+
75
+ if any(o.get("status") == STATUS_MATCHED for o in applicable):
76
+ return "true"
77
+
78
+ id_keyed_unmatched = any(
79
+ o.get("status") == STATUS_UNMATCHED and o.get("queried_by") == QUERIED_BY_ID
80
+ for o in applicable
81
+ )
82
+ if id_keyed_unmatched:
83
+ return "false"
84
+
85
+ return "unresolvable"
@@ -0,0 +1,517 @@
1
+ """Calibration runner for v3.8 claim_ref_alignment_audit_agent.
2
+
3
+ This module is the operational entrypoint that the agent prompt at
4
+ `academic-pipeline/agents/claim_ref_alignment_audit_agent.md` Step 8
5
+ narrates and that `academic-pipeline/references/claim_audit_calibration_protocol.md`
6
+ documents. It accepts a gold set (alignment + constraint tuples) plus a
7
+ caller-supplied `judge_fn` and emits a calibration report containing
8
+ FNR / FPR aggregates, per-judgment-class FNR / FPR, and the threshold
9
+ values used to gate the run.
10
+
11
+ Test contract is pinned by `scripts/test_claim_audit_calibration.py`
12
+ (T-C1 / T-C2 / T-C3 per spec §7.7). The default thresholds reflect the
13
+ spec §7.7 + §9 acceptance criteria — FNR < 0.15 AND FPR < 0.10.
14
+
15
+ Spec: docs/design/2026-05-15-issue-103-claim-alignment-audit-spec.md
16
+ §7.7 (test contract) + §1 deliverable 7 (protocol doc) + §13 step 10.
17
+ """
18
+ from __future__ import annotations
19
+
20
+ import os
21
+ import re
22
+ import sys
23
+ from typing import Any, Callable
24
+
25
+ # Share the true-partial content gate with the lint + runtime (single source of
26
+ # truth in _claim_audit_constants). Mirror the bare-import form the other two
27
+ # call sites use; ensure scripts/ is importable when this module is loaded as
28
+ # `scripts.claim_audit_calibration` (test path) as well as bare.
29
+ sys.path.insert(0, os.path.dirname(os.path.abspath(__file__)))
30
+ from _claim_audit_constants import is_true_partial_breakdown # noqa: E402
31
+
32
+ # Constraint id shape per spec §3.2 canonical parse rule (RE_NC_CONSTRAINT
33
+ # + RE_MNC_CONSTRAINT in scripts/_claim_audit_constants.py).
34
+ #
35
+ # MNC-N is the manifest-level negative constraint (broadest scope);
36
+ # NC-CN-M is the per-claim narrow constraint binding claim N constraint M.
37
+ # Claim ids are zero-padded to ≥3 digits, so NC-C[0-9]{3,}-[0-9]+ is the
38
+ # canonical NC shape — accepting NC-C1-1 (R1 codex residual P2) would
39
+ # silently violate the production lint that runs against emitted rows.
40
+ _RE_MNC_ID = re.compile(r"^MNC-[0-9]+$")
41
+ _RE_NC_ID = re.compile(r"^NC-C[0-9]{3,}-[0-9]+$")
42
+
43
+ # Spec §7.7 + §9 acceptance gates. Tightening these is a spec bump.
44
+ DEFAULT_FNR_THRESHOLD = 0.15
45
+ DEFAULT_FPR_THRESHOLD = 0.10
46
+
47
+ # Closed enums from the schema (claim_audit_result.judgment + the
48
+ # negative-constraint VIOLATED/NOT_VIOLATED split). Kept in sync with
49
+ # `shared/contracts/passport/claim_audit_result.schema.json`.
50
+ ALIGNMENT_JUDGMENTS = frozenset(
51
+ {"SUPPORTED", "UNSUPPORTED", "AMBIGUOUS", "RETRIEVAL_FAILED"}
52
+ )
53
+ CONSTRAINT_JUDGMENTS = frozenset({"VIOLATED", "NOT_VIOLATED"})
54
+ TUPLE_KINDS = frozenset({"alignment", "constraint"})
55
+
56
+ # Per-class report keys (T-C2). The alignment-class names mirror the
57
+ # judgment enum; constraint reporting collapses VIOLATED/NOT_VIOLATED into
58
+ # a single `violated_constraint` axis because the binary positive class
59
+ # for a constraint test is "VIOLATED".
60
+ PER_CLASS_KEYS = ("SUPPORTED", "UNSUPPORTED", "AMBIGUOUS", "violated_constraint")
61
+
62
+ # Constraint-tuple required fields per spec §7.7 rule (c). Either rule
63
+ # text inline OR a manifest-fixture path resolving to a manifest carrying
64
+ # the rule — silent-skip regression hardening.
65
+ _CONSTRAINT_REQUIRED_EITHER = ("constraint_under_test_rule_text", "manifest_fixture_path")
66
+ # Fields that alignment tuples MUST NOT carry (rule (b)).
67
+ _ALIGNMENT_FORBIDDEN = (
68
+ "constraint_under_test_id",
69
+ "constraint_under_test_rule_text",
70
+ "manifest_fixture_path",
71
+ )
72
+
73
+
74
+ class GoldSetValidationError(ValueError):
75
+ """Raised when validate_gold_set rejects a tuple at ingestion time.
76
+
77
+ The diagnostic always names the rule that failed (a / b / c / d per
78
+ spec §7.7) and the offending tuple index so calibration-fixture
79
+ authoring bugs surface loudly. Catching this exception in production
80
+ is a contract violation — fix the gold set, do not swallow the error.
81
+ """
82
+
83
+
84
+ def validate_gold_set(tuples: list[dict[str, Any]]) -> None:
85
+ """Validate the gold set per spec §7.7 rules (a)..(d) + rule (e) (#355).
86
+
87
+ Raises GoldSetValidationError on the first failed rule. Returns None
88
+ on success so the call site can ignore the return value — the
89
+ function's contract is exceptional, not value-returning.
90
+ """
91
+ not_violated_constraint_count = 0
92
+ for idx, tup in enumerate(tuples):
93
+ kind = tup.get("tuple_kind")
94
+ if kind not in TUPLE_KINDS:
95
+ raise GoldSetValidationError(
96
+ f"tuple {idx}: invalid tuple_kind {kind!r} "
97
+ f"(rule (a); must be one of {sorted(TUPLE_KINDS)})"
98
+ )
99
+ expected = tup.get("expected_judgment")
100
+ if kind == "alignment":
101
+ if expected not in ALIGNMENT_JUDGMENTS:
102
+ raise GoldSetValidationError(
103
+ f"tuple {idx}: alignment tuple has invalid "
104
+ f"expected_judgment {expected!r} "
105
+ f"(rule (b); must be one of {sorted(ALIGNMENT_JUDGMENTS)})"
106
+ )
107
+ for forbidden in _ALIGNMENT_FORBIDDEN:
108
+ if forbidden in tup:
109
+ raise GoldSetValidationError(
110
+ f"tuple {idx}: alignment tuple must not carry "
111
+ f"constraint field {forbidden!r} (rule (b))"
112
+ )
113
+ # Rule (e): a PARTIAL fixture must declare non-empty expected_sub_claims;
114
+ # without them `_breakdown_covers_expected` early-returns True and the
115
+ # #213 atomic-decomposition subset metric is silently bypassed.
116
+ if tup.get("expected_prompt_verdict") == "PARTIAL" and not tup.get("expected_sub_claims"):
117
+ raise GoldSetValidationError(
118
+ f"tuple {idx}: PARTIAL fixture must declare non-empty "
119
+ f"expected_sub_claims (rule (e); else the atomic-decomposition "
120
+ f"subset metric is silently skipped)"
121
+ )
122
+ else: # constraint
123
+ if expected not in CONSTRAINT_JUDGMENTS:
124
+ raise GoldSetValidationError(
125
+ f"tuple {idx}: constraint tuple has invalid "
126
+ f"expected_judgment {expected!r} "
127
+ f"(rule (c); must be one of {sorted(CONSTRAINT_JUDGMENTS)})"
128
+ )
129
+ if "constraint_under_test_id" not in tup:
130
+ raise GoldSetValidationError(
131
+ f"tuple {idx}: constraint tuple missing "
132
+ f"constraint_under_test_id (rule (c))"
133
+ )
134
+ if not any(tup.get(field) for field in _CONSTRAINT_REQUIRED_EITHER):
135
+ raise GoldSetValidationError(
136
+ f"tuple {idx}: constraint tuple missing both "
137
+ f"constraint_under_test_rule_text and manifest_fixture_path "
138
+ f"(rule (c); at least one required so the judge has a rule to evaluate)"
139
+ )
140
+ if expected == "NOT_VIOLATED":
141
+ not_violated_constraint_count += 1
142
+ if not_violated_constraint_count < 3:
143
+ raise GoldSetValidationError(
144
+ f"gold set has only {not_violated_constraint_count} NOT_VIOLATED "
145
+ f"constraint tuple(s); rule (d) requires ≥3 so constraint FPR is "
146
+ f"measurable and T-C1 can fail-on-threshold for the constraint line"
147
+ )
148
+
149
+
150
+ def _resolve_constraint_rule_text(tup: dict[str, Any]) -> str:
151
+ """Resolve a constraint tuple's rule text to the literal the judge receives.
152
+
153
+ R2 codex P1 closure: prior implementation passed
154
+ `tup.get("constraint_under_test_rule_text", "")` directly to the judge,
155
+ which meant a spec-valid manifest-only tuple (rule (c) accepts EITHER
156
+ inline rule_text OR manifest_fixture_path) silently reached the judge
157
+ with `rule=""` — the exact silent-skip authoring bug T-C3 was supposed
158
+ to prevent.
159
+
160
+ The v3.8.0 calibration runner supports inline rule_text only. Manifest-
161
+ resolver wiring is post-v3.8 (tracked by the protocol doc's "Resolved
162
+ design decisions" section). Until that ships, a manifest-only tuple
163
+ must fail loudly at run time, not pass quietly with an empty rule.
164
+ """
165
+ inline_rule = tup.get("constraint_under_test_rule_text")
166
+ if inline_rule:
167
+ return inline_rule
168
+ manifest_path = tup.get("manifest_fixture_path")
169
+ if manifest_path:
170
+ raise NotImplementedError(
171
+ f"constraint tuple references manifest_fixture_path={manifest_path!r} "
172
+ "but the v3.8.0 calibration runner does not yet resolve manifest "
173
+ "fixtures into rule text. Author the tuple with an inline "
174
+ "constraint_under_test_rule_text, or wait for the manifest resolver "
175
+ "(post-v3.8). validate_gold_set accepts both forms per spec §7.7 "
176
+ "rule (c), but the runner only supports the inline form today."
177
+ )
178
+ # Both inline and manifest_path are absent → validate_gold_set should have
179
+ # caught this. Defense-in-depth: surface as a logic error, not silent "".
180
+ raise GoldSetValidationError(
181
+ f"constraint tuple {tup.get('constraint_under_test_id')!r} reached "
182
+ "run_calibration with neither inline rule_text nor manifest_fixture_path; "
183
+ "validate_gold_set should have rejected this at ingestion (rule (c))"
184
+ )
185
+
186
+
187
+ def _derive_constraint_scope(constraint_id: str) -> str:
188
+ """Derive the active-constraint scope tag from a constraint_id literal.
189
+
190
+ R1 codex P2-b + Gemini P3 closure: prior implementation used a bare
191
+ `startswith("MNC-")` fallback that mislabelled leading-whitespace
192
+ ids (" MNC-1" → NC) and would silently accept malformed prefixes
193
+ ("bogus" → NC). The judge stub never read scope so the bug was
194
+ invisible at the canonical T-C1 path; a real judge that branches
195
+ on scope would receive the wrong tag.
196
+
197
+ The function rejects malformed ids with a diagnostic naming the
198
+ expected patterns. Spec §3.2 + protocol doc gold-tuple schema are
199
+ the source of truth; this regex pair mirrors them.
200
+ """
201
+ if not isinstance(constraint_id, str):
202
+ raise GoldSetValidationError(
203
+ f"constraint_under_test_id must be str; got {type(constraint_id).__name__}"
204
+ )
205
+ if _RE_MNC_ID.match(constraint_id):
206
+ return "MNC"
207
+ if _RE_NC_ID.match(constraint_id):
208
+ return "NC"
209
+ raise GoldSetValidationError(
210
+ f"constraint_under_test_id {constraint_id!r} does not match "
211
+ f"expected shape (MNC-N or NC-CN-M per spec §3.2)"
212
+ )
213
+
214
+
215
+ def _breakdown_covers_expected(
216
+ breakdown: Any, expected_sub_claims: Any
217
+ ) -> bool:
218
+ """True iff the judge's breakdown actually, atomically decomposes THIS claim.
219
+
220
+ `is_true_partial_breakdown` only proves the verdict MIX — a judge can pass it
221
+ with two generic lines. Each fixture declares `expected_sub_claims`:
222
+ `[{key_tokens: [...], sub_verdict: ...}, ...]`. Coverage requires a one-to-one
223
+ assignment of expected sub-claims to DISTINCT breakdown items where each item:
224
+ 1. contains all of its expected sub-claim's key tokens (case-insensitive),
225
+ 2. carries the expected sub_verdict, AND
226
+ 3. is ATOMIC — it does NOT also contain the distinguishing key tokens of a
227
+ *different* expected sub-claim.
228
+
229
+ Rule 3 + the distinct-item requirement defeat the gaming vector (ship-gate
230
+ round-2 finding): a judge returning two items whose `sub_claim_text` is the
231
+ FULL claim text contains every expected token in both items, so neither item
232
+ is atomic and no valid one-to-one assignment exists. A genuine decomposition
233
+ puts each sub-claim's tokens in its own item.
234
+
235
+ Empty `expected_sub_claims` falls back to True (non-breaking); the shipped
236
+ #213 fixtures all declare them, with disjoint key tokens per sub-claim.
237
+ """
238
+ if not expected_sub_claims:
239
+ return True
240
+ if not isinstance(breakdown, list):
241
+ return False
242
+ items = [it for it in breakdown if isinstance(it, dict)]
243
+ if not all(isinstance(e, dict) for e in expected_sub_claims):
244
+ return False
245
+
246
+ def _item_text(item: dict[str, Any]) -> str:
247
+ text = item.get("sub_claim_text")
248
+ return text.lower() if isinstance(text, str) else ""
249
+
250
+ def _has_tokens(text_l: str, tokens: Any) -> bool:
251
+ return bool(tokens) and all(
252
+ isinstance(t, str) and t.lower() in text_l for t in (tokens or [])
253
+ )
254
+
255
+ def _matches(exp_idx: int, item: dict[str, Any]) -> bool:
256
+ expected = expected_sub_claims[exp_idx]
257
+ text_l = _item_text(item)
258
+ # 1. contains own tokens + 2. right verdict.
259
+ if not _has_tokens(text_l, expected.get("key_tokens")):
260
+ return False
261
+ exp_verdict = expected.get("sub_verdict")
262
+ if exp_verdict is not None and item.get("sub_verdict") != exp_verdict:
263
+ return False
264
+ # 3. atomic — must NOT also carry another expected sub-claim's tokens.
265
+ for other_idx, other in enumerate(expected_sub_claims):
266
+ if other_idx == exp_idx:
267
+ continue
268
+ if _has_tokens(text_l, other.get("key_tokens")):
269
+ return False
270
+ return True
271
+
272
+ # Greedy is sufficient because rule 3 makes the match relation a partial
273
+ # matching where each item matches at most one expected sub-claim (an item
274
+ # carrying two sub-claims' tokens matches neither). Require a distinct item
275
+ # per expected sub-claim.
276
+ used: set[int] = set()
277
+ for exp_idx in range(len(expected_sub_claims)):
278
+ match_idx = next(
279
+ (i for i, item in enumerate(items) if i not in used and _matches(exp_idx, item)),
280
+ None,
281
+ )
282
+ if match_idx is None:
283
+ return False
284
+ used.add(match_idx)
285
+ return True
286
+
287
+
288
+ def _zero_division_safe(numerator: int, denominator: int) -> float:
289
+ """Return rate with `nan` semantics for empty denominators.
290
+
291
+ A class with zero positive ground-truth examples has undefined FNR;
292
+ the report records 0.0 with denominator=0 so downstream consumers can
293
+ distinguish "perfect score on no examples" from "perfect score on
294
+ some examples". Spec §7.7 rule (d) is the authoring guard that keeps
295
+ constraint FPR measurable; this is the fallback for the alignment
296
+ classes where rule (d) doesn't apply (e.g., RETRIEVAL_FAILED has
297
+ only one tuple in the canonical fixture).
298
+ """
299
+ if denominator == 0:
300
+ return 0.0
301
+ return numerator / denominator
302
+
303
+
304
+ def run_calibration(
305
+ gold_set: list[dict[str, Any]],
306
+ *,
307
+ judge_fn: Callable[..., dict[str, Any]],
308
+ thresholds: dict[str, float] | None = None,
309
+ ) -> dict[str, Any]:
310
+ """Drive the gold set through the judge_fn and emit a calibration report.
311
+
312
+ Args:
313
+ gold_set: list of tuples per spec §7.7 schema. Will be validated
314
+ via `validate_gold_set` before any judge call — invalid sets
315
+ raise GoldSetValidationError instead of producing a
316
+ silently-wrong report.
317
+ judge_fn: callable matching the v3.8 judge interface
318
+ (`claim_text`, `retrieved_excerpt`, `anchor_kind`,
319
+ `anchor_value`, `active_constraints`, `judge_model` kwargs).
320
+ For alignment tuples the runner passes the tuple's
321
+ `ref_text_excerpt` as `retrieved_excerpt`; for constraint
322
+ tuples it passes the inline rule_text wrapped in the
323
+ v3.8 active_constraints shape.
324
+ thresholds: optional dict overriding {"FNR": ..., "FPR": ...}.
325
+ Spec §7.7 defaults are 0.15 / 0.10.
326
+
327
+ Returns:
328
+ Dict with keys:
329
+ - FNR, FPR — aggregate rates across all tuples
330
+ - per_class — {SUPPORTED/UNSUPPORTED/AMBIGUOUS/violated_constraint:
331
+ {FNR, FPR, n_positive, n_negative}}
332
+ - thresholds — the active gate values (echoed for surfacing)
333
+ - n_total — gold set size
334
+ - n_alignment / n_constraint — split counts
335
+ """
336
+ validate_gold_set(gold_set)
337
+ if thresholds is None:
338
+ thresholds = {"FNR": DEFAULT_FNR_THRESHOLD, "FPR": DEFAULT_FPR_THRESHOLD}
339
+
340
+ # Aggregate counts. Confusion-matrix vocabulary:
341
+ # - positive class = "the tuple's expected_judgment"
342
+ # - FN = expected was X, judge said not-X
343
+ # - FP = expected was not-X, judge said X
344
+ # For per-class reporting we collapse the multi-class problem to
345
+ # one-vs-rest binary, which is the standard reviewer-calibration
346
+ # convention referenced in `calibration_mode_protocol.md`.
347
+ per_class_stats: dict[str, dict[str, int]] = {
348
+ cls: {"FN": 0, "FP": 0, "n_positive": 0, "n_negative": 0}
349
+ for cls in PER_CLASS_KEYS
350
+ }
351
+ aggregate_FN = 0
352
+ aggregate_FP = 0
353
+ aggregate_n_positive = 0
354
+ aggregate_n_negative = 0
355
+
356
+ n_alignment = 0
357
+ n_constraint = 0
358
+
359
+ # Partial-support subset (#213). A partial fixture is tagged
360
+ # expected_prompt_verdict=PARTIAL; its expected_judgment is UNSUPPORTED (B1),
361
+ # so the aggregate FNR scores a bare-UNSUPPORTED judge as a HIT and HIDES the
362
+ # exact regression #213 closes (judge stops decomposing). The subset metric
363
+ # counts a partial fixture as passed ONLY when the judge emits UNSUPPORTED
364
+ # AND a well-formed true-partial sub_claim_breakdown — so a bare-UNSUPPORTED
365
+ # judge registers a non-zero miss_rate here even while the aggregate stays green.
366
+ n_partial = 0
367
+ partial_misses = 0
368
+
369
+ for tup in gold_set:
370
+ kind = tup["tuple_kind"]
371
+ expected = tup["expected_judgment"]
372
+ if kind == "alignment":
373
+ n_alignment += 1
374
+ response = judge_fn(
375
+ claim_text=tup["claim_text"],
376
+ retrieved_excerpt=tup.get("ref_text_excerpt"),
377
+ anchor_kind=tup.get("anchor", {}).get("kind"),
378
+ anchor_value=tup.get("anchor", {}).get("value"),
379
+ active_constraints=[],
380
+ judge_model="calibration-stub",
381
+ )
382
+ actual = response["judgment"]
383
+ if tup.get("expected_prompt_verdict") == "PARTIAL":
384
+ n_partial += 1
385
+ breakdown = response.get("sub_claim_breakdown")
386
+ hit = (
387
+ actual == "UNSUPPORTED"
388
+ and is_true_partial_breakdown(breakdown)
389
+ and _breakdown_covers_expected(breakdown, tup.get("expected_sub_claims"))
390
+ )
391
+ if not hit:
392
+ partial_misses += 1
393
+ # For each alignment one-vs-rest class in PER_CLASS_KEYS,
394
+ # check whether this tuple contributes a TP / FN / FP / TN.
395
+ for cls in ("SUPPORTED", "UNSUPPORTED", "AMBIGUOUS"):
396
+ _accumulate_one_vs_rest(
397
+ per_class_stats[cls],
398
+ positive_class=cls,
399
+ expected_label=expected,
400
+ actual_label=actual,
401
+ )
402
+ # Aggregate (multi-class) FN/FP across alignment tuples.
403
+ if expected != actual:
404
+ aggregate_FN += 1 # missed the expected class
405
+ aggregate_FP += 1 # picked the wrong class
406
+ aggregate_n_positive += 1
407
+ aggregate_n_negative += 1
408
+ else: # constraint
409
+ n_constraint += 1
410
+ constraint_id = tup["constraint_under_test_id"]
411
+ scope = _derive_constraint_scope(constraint_id)
412
+ rule_text = _resolve_constraint_rule_text(tup)
413
+ response = judge_fn(
414
+ claim_text=tup["claim_text"],
415
+ retrieved_excerpt=tup.get("ref_text_excerpt"),
416
+ anchor_kind=tup.get("anchor", {}).get("kind"),
417
+ anchor_value=tup.get("anchor", {}).get("value"),
418
+ active_constraints=[
419
+ {
420
+ "constraint_id": constraint_id,
421
+ "rule": rule_text,
422
+ "scope": scope,
423
+ }
424
+ ],
425
+ judge_model="calibration-stub",
426
+ )
427
+ actual = response["judgment"]
428
+ _accumulate_one_vs_rest(
429
+ per_class_stats["violated_constraint"],
430
+ positive_class="VIOLATED",
431
+ expected_label=expected,
432
+ actual_label=actual,
433
+ )
434
+ # Aggregate matrix for constraint tuples uses VIOLATED as
435
+ # the positive class — that's the gate-refuse signal.
436
+ # /simplify quality Q-P2-a closure: collapse the if/elif
437
+ # ladder into two ground-truth branches so an unexpected
438
+ # judge label (e.g. RETRIEVAL_FAILED on a constraint tuple)
439
+ # still counts toward the denominator. Without this fallback
440
+ # an unknown label silently dropped from aggregate counts
441
+ # while per-class still counted it correctly — a measurable-
442
+ # but-invisible reporting divergence.
443
+ if expected == "VIOLATED":
444
+ aggregate_n_positive += 1
445
+ if actual != "VIOLATED":
446
+ aggregate_FN += 1
447
+ else: # expected == "NOT_VIOLATED"
448
+ aggregate_n_negative += 1
449
+ if actual == "VIOLATED":
450
+ aggregate_FP += 1
451
+
452
+ per_class_report: dict[str, dict[str, float | int]] = {}
453
+ for cls, stats in per_class_stats.items():
454
+ per_class_report[cls] = {
455
+ "FNR": _zero_division_safe(stats["FN"], stats["n_positive"]),
456
+ "FPR": _zero_division_safe(stats["FP"], stats["n_negative"]),
457
+ "n_positive": stats["n_positive"],
458
+ "n_negative": stats["n_negative"],
459
+ }
460
+
461
+ return {
462
+ "FNR": _zero_division_safe(aggregate_FN, aggregate_n_positive),
463
+ "FPR": _zero_division_safe(aggregate_FP, aggregate_n_negative),
464
+ "per_class": per_class_report,
465
+ # Partial-support subset (#213). Additive block; absent partial fixtures
466
+ # yield n_partial=0 + miss_rate=0.0 (nothing to miss), so the block is
467
+ # non-breaking on a gold set without partial tuples.
468
+ "partial_support": {
469
+ "miss_rate": _zero_division_safe(partial_misses, n_partial),
470
+ "n_partial": n_partial,
471
+ },
472
+ "thresholds": thresholds,
473
+ "n_total": len(gold_set),
474
+ "n_alignment": n_alignment,
475
+ "n_constraint": n_constraint,
476
+ }
477
+
478
+
479
+ def _accumulate_one_vs_rest(
480
+ stats: dict[str, int],
481
+ *,
482
+ positive_class: str,
483
+ expected_label: str,
484
+ actual_label: str,
485
+ ) -> None:
486
+ """Update a per-class confusion table for one-vs-rest binary metrics.
487
+
488
+ `positive_class` names the label that counts as positive for this
489
+ bucket (the per_class_stats key IS the positive class). The four
490
+ conditions:
491
+
492
+ | expected_label == positive | actual_label == positive | bucket |
493
+ |---|---|---|
494
+ | yes | yes | TP (n_positive++) |
495
+ | yes | no | FN (n_positive++, FN++) |
496
+ | no | yes | FP (n_negative++, FP++) |
497
+ | no | no | TN (n_negative++) |
498
+ """
499
+ is_positive_truth = expected_label == positive_class
500
+ is_positive_pred = actual_label == positive_class
501
+ if is_positive_truth:
502
+ stats["n_positive"] += 1
503
+ if not is_positive_pred:
504
+ stats["FN"] += 1
505
+ else:
506
+ stats["n_negative"] += 1
507
+ if is_positive_pred:
508
+ stats["FP"] += 1
509
+
510
+
511
+ __all__ = [
512
+ "DEFAULT_FNR_THRESHOLD",
513
+ "DEFAULT_FPR_THRESHOLD",
514
+ "GoldSetValidationError",
515
+ "run_calibration",
516
+ "validate_gold_set",
517
+ ]