psyclaw 0.27.22 → 0.28.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +11 -5
- package/dist/apps/panel/index.html +2 -2
- package/dist/src/adapters/pi/extension.js +225 -92
- package/dist/src/adapters/pi/extension.js.map +1 -1
- package/dist/src/agents/import.js +44 -32
- package/dist/src/agents/import.js.map +1 -1
- package/dist/src/analysis/hooks.d.ts +1 -0
- package/dist/src/analysis/hooks.js +20 -1
- package/dist/src/analysis/hooks.js.map +1 -1
- package/dist/src/ars/bridge.d.ts +20 -0
- package/dist/src/ars/bridge.js +132 -0
- package/dist/src/ars/bridge.js.map +1 -0
- package/dist/src/ars/contracts.d.ts +55 -0
- package/dist/src/ars/contracts.js +2 -0
- package/dist/src/ars/contracts.js.map +1 -0
- package/dist/src/ars/panel-plan.d.ts +4 -0
- package/dist/src/ars/panel-plan.js +11 -0
- package/dist/src/ars/panel-plan.js.map +1 -0
- package/dist/src/ars/pi-panel-executor.d.ts +30 -0
- package/dist/src/ars/pi-panel-executor.js +140 -0
- package/dist/src/ars/pi-panel-executor.js.map +1 -0
- package/dist/src/ars/profile.d.ts +36 -0
- package/dist/src/ars/profile.js +119 -0
- package/dist/src/ars/profile.js.map +1 -0
- package/dist/src/ars/re-review.d.ts +22 -0
- package/dist/src/ars/re-review.js +172 -0
- package/dist/src/ars/re-review.js.map +1 -0
- package/dist/src/branding.d.ts +2 -4
- package/dist/src/branding.js +3 -5
- package/dist/src/branding.js.map +1 -1
- package/dist/src/bundled-tools.d.ts +3 -0
- package/dist/src/bundled-tools.js +21 -0
- package/dist/src/bundled-tools.js.map +1 -0
- package/dist/src/chat.js +6 -5
- package/dist/src/chat.js.map +1 -1
- package/dist/src/creation/contracts.d.ts +38 -0
- package/dist/src/creation/contracts.js +2 -0
- package/dist/src/creation/contracts.js.map +1 -0
- package/dist/src/creation/service.d.ts +7 -0
- package/dist/src/creation/service.js +196 -0
- package/dist/src/creation/service.js.map +1 -0
- package/dist/src/index.d.ts +10 -0
- package/dist/src/index.js +10 -0
- package/dist/src/index.js.map +1 -1
- package/dist/src/install/installer.js +32 -10
- package/dist/src/install/installer.js.map +1 -1
- package/dist/src/orchestration/personas.d.ts +15 -0
- package/dist/src/orchestration/personas.js +51 -0
- package/dist/src/orchestration/personas.js.map +1 -0
- package/dist/src/orchestration/pi-executor.d.ts +1 -0
- package/dist/src/orchestration/pi-executor.js +1 -1
- package/dist/src/orchestration/pi-executor.js.map +1 -1
- package/dist/src/panel/extension.js +29 -8
- package/dist/src/panel/extension.js.map +1 -1
- package/dist/src/panel/server.js +14 -5
- package/dist/src/panel/server.js.map +1 -1
- package/dist/src/project/paths.d.ts +3 -0
- package/dist/src/project/paths.js +7 -0
- package/dist/src/project/paths.js.map +1 -1
- package/dist/src/rules/user-rules.d.ts +8 -0
- package/dist/src/rules/user-rules.js +36 -0
- package/dist/src/rules/user-rules.js.map +1 -0
- package/dist/src/skills/contracts.d.ts +4 -4
- package/dist/src/skills/recommended.js +1 -1
- package/dist/src/skills/registry.js +49 -28
- package/dist/src/skills/registry.js.map +1 -1
- package/dist/src/style/cli-ui.js +0 -1
- package/dist/src/style/cli-ui.js.map +1 -1
- package/package.json +14 -3
- package/scripts/rebrand-pi.mjs +6 -0
- package/skills/recommended/catalog.json +2 -11
- package/vendor/ars/.claude/CLAUDE.md +371 -0
- package/vendor/ars/.command-invariants.toml +24 -0
- package/vendor/ars/CITATION.cff +35 -0
- package/vendor/ars/LICENSE +417 -0
- package/vendor/ars/MODE_REGISTRY.md +76 -0
- package/vendor/ars/NOTICE.md +26 -0
- package/vendor/ars/POSITIONING.md +99 -0
- package/vendor/ars/PSYCLAW_SOURCE.json +10 -0
- package/vendor/ars/README.md +751 -0
- package/vendor/ars/SECURITY.md +52 -0
- package/vendor/ars/THIRD_PARTY.md +70 -0
- package/vendor/ars/academic-paper/SKILL.md +542 -0
- package/vendor/ars/academic-paper/agents/abstract_bilingual_agent.md +171 -0
- package/vendor/ars/academic-paper/agents/argument_builder_agent.md +276 -0
- package/vendor/ars/academic-paper/agents/citation_compliance_agent.md +422 -0
- package/vendor/ars/academic-paper/agents/draft_writer_agent.md +656 -0
- package/vendor/ars/academic-paper/agents/formatter_agent.md +999 -0
- package/vendor/ars/academic-paper/agents/intake_agent.md +393 -0
- package/vendor/ars/academic-paper/agents/literature_strategist_agent.md +626 -0
- package/vendor/ars/academic-paper/agents/peer_reviewer_agent.md +516 -0
- package/vendor/ars/academic-paper/agents/revision_coach_agent.md +334 -0
- package/vendor/ars/academic-paper/agents/socratic_mentor_agent.md +527 -0
- package/vendor/ars/academic-paper/agents/structure_architect_agent.md +401 -0
- package/vendor/ars/academic-paper/agents/visualization_agent.md +441 -0
- package/vendor/ars/academic-paper/examples/chinese_paper_example.md +278 -0
- package/vendor/ars/academic-paper/examples/clinical_citation_verification_checklist.md +95 -0
- package/vendor/ars/academic-paper/examples/clinical_epistemic_status_example.md +100 -0
- package/vendor/ars/academic-paper/examples/commitment_ledger_example.md +147 -0
- package/vendor/ars/academic-paper/examples/imrad_hei_example.md +234 -0
- package/vendor/ars/academic-paper/examples/literature_review_example.md +260 -0
- package/vendor/ars/academic-paper/examples/plan_mode_guided_writing.md +600 -0
- package/vendor/ars/academic-paper/examples/revision_mode_example.md +344 -0
- package/vendor/ars/academic-paper/examples/revision_recovery_example.md +506 -0
- package/vendor/ars/academic-paper/examples/version_family_reconciliation_example.md +89 -0
- package/vendor/ars/academic-paper/references/abstract_writing_guide.md +169 -0
- package/vendor/ars/academic-paper/references/academic_writing_style.md +188 -0
- package/vendor/ars/academic-paper/references/anti_leakage_protocol.md +83 -0
- package/vendor/ars/academic-paper/references/apa7_chinese_citation_guide.md +364 -0
- package/vendor/ars/academic-paper/references/apa7_extended_guide.md +198 -0
- package/vendor/ars/academic-paper/references/changelog.md +11 -0
- package/vendor/ars/academic-paper/references/citation_format_switcher.md +228 -0
- package/vendor/ars/academic-paper/references/committee_correspondence_protocol.md +158 -0
- package/vendor/ars/academic-paper/references/credit_authorship_guide.md +308 -0
- package/vendor/ars/academic-paper/references/disclosure_mode_protocol.md +478 -0
- package/vendor/ars/academic-paper/references/domain_evidence_profiles.md +38 -0
- package/vendor/ars/academic-paper/references/failure_paths.md +349 -0
- package/vendor/ars/academic-paper/references/funding_statement_guide.md +319 -0
- package/vendor/ars/academic-paper/references/hei_domain_glossary.md +169 -0
- package/vendor/ars/academic-paper/references/intro_title_rhetoric_guide.md +114 -0
- package/vendor/ars/academic-paper/references/journal_submission_guide.md +249 -0
- package/vendor/ars/academic-paper/references/latex_template_reference.md +378 -0
- package/vendor/ars/academic-paper/references/mode_selection_guide.md +378 -0
- package/vendor/ars/academic-paper/references/paper_structure_patterns.md +330 -0
- package/vendor/ars/academic-paper/references/plan_mode_protocol.md +112 -0
- package/vendor/ars/academic-paper/references/policy_anchor_disclosure_protocol.md +200 -0
- package/vendor/ars/academic-paper/references/policy_anchor_table.md +157 -0
- package/vendor/ars/academic-paper/references/revision_patch_protocol.md +173 -0
- package/vendor/ars/academic-paper/references/statistical_visualization_standards.md +750 -0
- package/vendor/ars/academic-paper/references/venue_disclosure_policies.md +259 -0
- package/vendor/ars/academic-paper/references/vlm_figure_verification.md +126 -0
- package/vendor/ars/academic-paper/references/workflow_phase_details.md +135 -0
- package/vendor/ars/academic-paper/references/writing_judgment_framework.md +59 -0
- package/vendor/ars/academic-paper/references/writing_quality_check.md +173 -0
- package/vendor/ars/academic-paper/templates/bilingual_abstract_template.md +78 -0
- package/vendor/ars/academic-paper/templates/case_study_template.md +129 -0
- package/vendor/ars/academic-paper/templates/conference_paper_template.md +108 -0
- package/vendor/ars/academic-paper/templates/credit_statement_template.md +132 -0
- package/vendor/ars/academic-paper/templates/funding_statement_template.md +290 -0
- package/vendor/ars/academic-paper/templates/imrad_template.md +183 -0
- package/vendor/ars/academic-paper/templates/latex_article_template.tex +199 -0
- package/vendor/ars/academic-paper/templates/literature_review_template.md +135 -0
- package/vendor/ars/academic-paper/templates/policy_brief_template.md +139 -0
- package/vendor/ars/academic-paper/templates/revision_tracking_template.md +199 -0
- package/vendor/ars/academic-paper/templates/theoretical_paper_template.md +119 -0
- package/vendor/ars/academic-paper-reviewer/SKILL.md +491 -0
- package/vendor/ars/academic-paper-reviewer/agents/devils_advocate_reviewer_agent.md +443 -0
- package/vendor/ars/academic-paper-reviewer/agents/domain_reviewer_agent.md +412 -0
- package/vendor/ars/academic-paper-reviewer/agents/editorial_synthesizer_agent.md +478 -0
- package/vendor/ars/academic-paper-reviewer/agents/eic_agent.md +339 -0
- package/vendor/ars/academic-paper-reviewer/agents/field_analyst_agent.md +221 -0
- package/vendor/ars/academic-paper-reviewer/agents/methodology_reviewer_agent.md +449 -0
- package/vendor/ars/academic-paper-reviewer/agents/perspective_reviewer_agent.md +427 -0
- package/vendor/ars/academic-paper-reviewer/examples/hei_paper_review_example.md +391 -0
- package/vendor/ars/academic-paper-reviewer/examples/interdisciplinary_review_example.md +299 -0
- package/vendor/ars/academic-paper-reviewer/examples/subclaim_decomposition_example.md +80 -0
- package/vendor/ars/academic-paper-reviewer/references/calibration_mode_protocol.md +256 -0
- package/vendor/ars/academic-paper-reviewer/references/changelog.md +10 -0
- package/vendor/ars/academic-paper-reviewer/references/editorial_decision_standards.md +236 -0
- package/vendor/ars/academic-paper-reviewer/references/guided_mode_protocol.md +34 -0
- package/vendor/ars/academic-paper-reviewer/references/integration_guide.md +15 -0
- package/vendor/ars/academic-paper-reviewer/references/quality_rubrics.md +84 -0
- package/vendor/ars/academic-paper-reviewer/references/re_review_mode_protocol.md +340 -0
- package/vendor/ars/academic-paper-reviewer/references/review_criteria_framework.md +98 -0
- package/vendor/ars/academic-paper-reviewer/references/review_panel_provenance_protocol.md +197 -0
- package/vendor/ars/academic-paper-reviewer/references/review_quality_thinking.md +58 -0
- package/vendor/ars/academic-paper-reviewer/references/reviewer_sprint_prompt_source.md +324 -0
- package/vendor/ars/academic-paper-reviewer/references/sprint_contract_protocol.md +296 -0
- package/vendor/ars/academic-paper-reviewer/references/statistical_reporting_standards.md +505 -0
- package/vendor/ars/academic-paper-reviewer/references/top_journals_by_field.md +206 -0
- package/vendor/ars/academic-paper-reviewer/templates/editorial_decision_template.md +235 -0
- package/vendor/ars/academic-paper-reviewer/templates/peer_review_report_template.md +305 -0
- package/vendor/ars/academic-paper-reviewer/templates/revision_response_template.md +248 -0
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- package/vendor/ars/academic-pipeline/agents/claim_ref_alignment_audit_agent.md +382 -0
- package/vendor/ars/academic-pipeline/agents/collaboration_depth_agent.md +164 -0
- package/vendor/ars/academic-pipeline/agents/integrity_verification_agent.md +870 -0
- package/vendor/ars/academic-pipeline/agents/pipeline_orchestrator_agent.md +1379 -0
- package/vendor/ars/academic-pipeline/agents/state_tracker_agent.md +622 -0
- package/vendor/ars/academic-pipeline/examples/full_pipeline_example.md +482 -0
- package/vendor/ars/academic-pipeline/examples/integrity_failure_recovery.md +389 -0
- package/vendor/ars/academic-pipeline/examples/mid_entry_example.md +414 -0
- package/vendor/ars/academic-pipeline/references/adapters/.gitkeep +0 -0
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- package/vendor/ars/academic-pipeline/references/ai_research_failure_modes.md +185 -0
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- package/vendor/ars/academic-pipeline/references/claim_audit_calibration_protocol.md +175 -0
- package/vendor/ars/academic-pipeline/references/claim_verification_protocol.md +282 -0
- package/vendor/ars/academic-pipeline/references/external_review_protocol.md +131 -0
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- package/vendor/ars/academic-pipeline/references/passport_as_reset_boundary.md +132 -0
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- package/vendor/ars/academic-pipeline/references/progress_dashboard_template.md +38 -0
- package/vendor/ars/academic-pipeline/references/reinforcement_content.md +15 -0
- package/vendor/ars/academic-pipeline/references/reproducibility_audit.md +55 -0
- package/vendor/ars/academic-pipeline/references/score_trajectory_protocol.md +78 -0
- package/vendor/ars/academic-pipeline/references/team_collaboration_protocol.md +261 -0
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- package/vendor/ars/agents/report_compiler_agent.md +341 -0
- package/vendor/ars/agents/research_architect_agent.md +298 -0
- package/vendor/ars/agents/synthesis_agent.md +356 -0
- package/vendor/ars/commands/ars-3w.md +10 -0
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- package/vendor/ars/scripts/uncited_assertion_detector.py +254 -0
- package/vendor/ars/scripts/v3_6_7_inversion_manifest.json +9 -0
- package/vendor/ars/scripts/v3_6_8_inversion_manifest.json +10 -0
- package/vendor/ars/scripts/validate_claim_standing_stance_assets.py +249 -0
- package/vendor/ars/scripts/validate_compliance_fixtures.py +56 -0
- package/vendor/ars/scripts/validate_ideation_diversity_assets.py +303 -0
- package/vendor/ars/scripts/venue_disclosure_contract_harness.py +837 -0
- package/vendor/ars/scripts/verification_cache.py +276 -0
- package/vendor/ars/scripts/verification_gate/__init__.py +345 -0
- package/vendor/ars/scripts/verify_passport.py +133 -0
- package/vendor/ars/scripts/verify_submission_package.py +1657 -0
- package/vendor/ars/shared/agents/compliance_agent.md +136 -0
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- package/vendor/ars/shared/references/authority_content_coverage_advisory_protocol.md +275 -0
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- package/vendor/ars/shared/references/psychometric_terminology_glossary.md +109 -0
- package/vendor/ars/shared/references/review_criteria_consumer_protocol.md +238 -0
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---
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name: compliance_agent
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description: "Runs PRISMA-trAIce + RAISE compliance checks at Stage 2.5 / 4.5 integrity gates and emits Schema 12 compliance_report"
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version: 1.0.0
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owner_skill: shared
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invoked_by: [academic-pipeline, deep-research, academic-paper]
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data_access_level: verified_only
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task_type: open-ended
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status: active
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related_skills: [academic-pipeline, deep-research, academic-paper]
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last_updated: "2026-04-20"
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related_protocols:
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- shared/prisma_trAIce_protocol.md
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---
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# compliance_agent
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Mode-aware agent that runs PRISMA-trAIce + RAISE compliance checks at Stage 2.5 / 4.5 Integrity Gates, producing Schema 12 `compliance_report` outputs.
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## Scope
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- **Reads:** manuscript draft, methodology blueprint, bibliography, material passport, user-provided AI tool metadata
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- **Writes nothing to the manuscript.** Output is a separate `compliance_report` handed to the orchestrator.
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- **Does not hallucinate missing items.** Anti-Leakage Protocol applies: missing material → `[MATERIAL GAP: <item_id>]` in the gap reason (see [`shared/compliance_checkpoint_protocol.md#canonical-gap-tag-vocabulary`](../compliance_checkpoint_protocol.md#canonical-gap-tag-vocabulary)).
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## Input contract
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```yaml
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compliance_mode: "systematic_review" | "primary_research" | "other_evidence_synthesis"
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stage: "2.5" | "4.5"
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materials:
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manuscript_draft: <path or inline>
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methodology_blueprint: <path>
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bibliography: <path>
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material_passport: <Schema 9 payload>
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user_metadata:
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intended_venue: <string or null>
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ai_tools_used:
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- {name, version, developer, stage, purpose, access_url_or_doi}
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```
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## Output contract
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`compliance_report` conforming to `shared/compliance_report.schema.json` (Schema 12). Appended to `material_passport.compliance_history[]` by the orchestrator.
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## Dispatch logic
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```python
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if compliance_mode == "systematic_review":
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run PRISMA-trAIce checks (Stage-specific item subset)
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run RAISE full (principles + 8-role matrix)
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block_decision respects tier semantics
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run PRISMA-trAIce checks in "adaptation" mode (items become Info)
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run RAISE full
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block_decision capped at warn
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elif compliance_mode == "primary_research":
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run RAISE principles_only
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set prisma_trAIce to null
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block_decision capped at warn
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```
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| Stage | PRISMA-trAIce items checked | RAISE focus |
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|---|---|---|
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| 2.5 | M1, M2, M3, M4, M5, M6, M7, M8, M9, M10 | human_oversight, fit_for_purpose |
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| 4.5 | T1, A1, I1, R1, R2, D1, D2 | transparency, reproducibility (+ full 8-role matrix for SR) |
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Items within each stage subset are independent and MAY be evaluated concurrently. The agent SHOULD read `material_passport.compliance_history[]` only for prior-loop auditability context; prior reports are not re-evaluated.
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## Tier → decision mapping (SR mode)
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|---|---|
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| Mandatory | `block_decision = block` |
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| Highly Recommended | `block_decision = warn` |
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| Recommended | `block_decision = pass` (logged as info) |
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| Optional | `block_decision = pass` (logged as info) |
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Multiple tier contributions aggregate using `max_severity` (see `compliance_checkpoint_protocol.md §Decision precedence`).
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### Mandatory-block surface message
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When a Mandatory-tier PRISMA-trAIce item triggers `block_decision = block`, the surfaced block message MUST include the following maturity note alongside the gap reason and override-ladder reference, so the user understands what authority is blocking them:
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> *Note: PRISMA-trAIce is currently a foundational proposal (Holst et al. 2025, *JMIR AI*, doi:[10.2196/80247](https://doi.org/10.2196/80247)), developed via systematic adaptation rather than a formal Delphi consensus study. Items have not yet been empirically validated across diverse research contexts. See `shared/prisma_trAIce_protocol.md` § Status disclaimer.*
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This note is informational only — it does not lower the block severity. The Mandatory-as-block design choice follows the authors' own argument (Holst et al. 2025) that non-transparent AI use is the higher-cost failure mode. Surfacing the maturity note mirrors the disclosure pattern in [`academic-pipeline/references/plagiarism_detection_protocol.md`](../../academic-pipeline/references/plagiarism_detection_protocol.md), which discloses heuristic-screening scope to the user.
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| ID | Question | On fail |
|
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101
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+
|---|---|---|
|
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102
|
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| CA-1 | Am I quoting PRISMA-trAIce items from memory or from `shared/prisma_trAIce_protocol.md`? | Re-read the protocol file; requote. |
|
|
103
|
+
| CA-2 | Are my block decisions anchored to each item's stated tier, not promoted/demoted from memory? | Re-read tier assignments; correct any drift. |
|
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104
|
+
| CA-3 | **SR mode only.** Did all 17 items pass AND `evidence[]` is empty? (Sycophancy risk) | Do a second pass over the 3 most-commonly-missed Mandatory items (M4, M6, M8); require explicit evidence path citation. |
|
|
105
|
+
| CA-4 | For each RAISE principle marked `pass`, is `principle_evidence[<principle>]` non-empty? | Downgrade the principle to `warn` with note `[WEAK EVIDENCE]`. |
|
|
106
|
+
|
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107
|
+
Self-check failures are not errors — they are the agent's guardrail. Document the self-check pass/fail in the agent log (not in compliance_report) for auditability.
|
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|
+
|
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109
|
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## Error behaviour
|
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+
|
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| Error | Handling |
|
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|---|---|
|
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|
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| Missing input material | Apply Anti-Leakage: mark `[MATERIAL GAP]`, item auto-FAILs, tier dictates block/warn. Never hallucinate. |
|
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| Mode/context mismatch (e.g. `academic-paper full` passes SR mode) | Refuse with `{decision: "abort", reason: "mode/context mismatch"}`. Orchestrator must re-evaluate and re-invoke. |
|
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|
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| Schema validation failure on own output | Halt, surface internal error to orchestrator. Do NOT append invalid report to compliance_history. |
|
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|
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| Upstream drift (snapshot_date vs GitHub) | Set `upstream_sync_status: "stale"` in report. Non-blocking. |
|
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|
+
|
|
118
|
+
<!-- harness-retirement 2026-06-10 (F-008): the "Never hallucinate." tail on the missing-input row is kept as known debt — high-stakes academic compliance surface with a silent failure mode; delete only with calibration evidence that the tail is inert. -->
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|
+
|
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120
|
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## Interaction with existing agents
|
|
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|
+
|
|
122
|
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- Runs AFTER `integrity_verification_agent` (existing) at Stage 2.5 / 4.5 — compliance extends integrity, does not replace it.
|
|
123
|
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- Runs ALONGSIDE `failure_mode_checklist` (v3.2). Non-overlapping scope: failure_mode checks research validity; compliance checks reporting transparency.
|
|
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|
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- Provides output consumed by `report_compiler_agent` (at Stage 6) for the AI Self-Reflection Report compliance summary.
|
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|
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|
|
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|
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## Invocation protocol
|
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|
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|
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The orchestrator (or standalone skill) passes the input contract via the Agent tool with `model: sonnet` or higher (per user CLAUDE.md: never haiku). The agent returns the serialised compliance_report. The orchestrator validates against Schema 12 before appending to passport.
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|
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## Related reading
|
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|
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- `shared/prisma_trAIce_protocol.md` — item-level checks
|
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- `shared/raise_framework.md` — principle definitions and role matrix
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|
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- `shared/compliance_checkpoint_protocol.md` — checkpoint behaviour and override ladder
|
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|
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- `academic-paper/references/anti_leakage_protocol.md` — gap-marking discipline
|
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|
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- `academic-pipeline/references/pipeline_state_machine.md` — FAIL-loop integration
|
|
@@ -0,0 +1,173 @@
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1
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+
# Artifact Reproducibility Pattern (v3.3.5+)
|
|
2
|
+
|
|
3
|
+
## Why this exists
|
|
4
|
+
|
|
5
|
+
ARS produces research artifacts — draft papers, literature reviews, review reports. A year
|
|
6
|
+
from now, you may want to reproduce one. Today's Material Passport (Schema 9) captures WHO
|
|
7
|
+
produced the artifact and WHEN, but not WITH WHAT. Which LLM? Which ARS version? Which
|
|
8
|
+
skill files? Which session materials?
|
|
9
|
+
|
|
10
|
+
The `repro_lock` sub-block fills that gap.
|
|
11
|
+
|
|
12
|
+
When the Anthropic automated-w2s-researcher paper (2026) claimed "2 researchers × 7 days
|
|
13
|
+
vs 9 agents × 5 days," readers had no way to audit the conditions. This pattern ensures
|
|
14
|
+
that ARS-produced artifacts carry their configuration on record — not as a replay mechanism,
|
|
15
|
+
but as an honest documentation trail.
|
|
16
|
+
|
|
17
|
+
## What this pattern IS NOT (read this first)
|
|
18
|
+
|
|
19
|
+
This is non-negotiable. Every future user MUST read this section before assuming the lock
|
|
20
|
+
guarantees anything it does not.
|
|
21
|
+
|
|
22
|
+
1. **LLM outputs are not byte-reproducible even at temperature 0.** Model providers update
|
|
23
|
+
weights without changing the model id. `model.weight_stable: false` acknowledges this
|
|
24
|
+
explicitly. `model.id` is an identifier, not a weight hash.
|
|
25
|
+
|
|
26
|
+
2. **Live external API queries are recorded as protocol versions, not snapshots.** The S2
|
|
27
|
+
API changes daily. A paper citing DOI 10.1000/x today may return different metadata
|
|
28
|
+
tomorrow. `s2_api_protocol_version` records which VERSION of our query logic ran, not
|
|
29
|
+
a snapshot of the response.
|
|
30
|
+
|
|
31
|
+
3. **Mid-skill prompt mutations are not captured.** `prompts.hash_timing: "skill-load"` is
|
|
32
|
+
a declaration: hashes are taken when the skill loads, not per agent call. Late injection
|
|
33
|
+
of user-provided reference files, conditional branches, and dynamic prompt modifications
|
|
34
|
+
are NOT reflected in the hash. This is a known imprecision.
|
|
35
|
+
|
|
36
|
+
4. **`stochasticity_declaration` is required, not optional.** Omitting it makes the lock
|
|
37
|
+
dishonest by implication. Every generated passport includes the declaration verbatim.
|
|
38
|
+
|
|
39
|
+
If you want deterministic replay, you are reading the wrong pattern. This pattern gives
|
|
40
|
+
you CONFIGURATION DOCUMENTATION sufficient to INVESTIGATE divergence — not to PREVENT it.
|
|
41
|
+
|
|
42
|
+
## The block at a glance
|
|
43
|
+
|
|
44
|
+
```yaml
|
|
45
|
+
repro_lock:
|
|
46
|
+
schema_version: "1.0" # lock schema version
|
|
47
|
+
stochasticity_declaration: "LLM outputs are not byte-reproducible. This lockfile documents configuration, not a deterministic replay guarantee."
|
|
48
|
+
ars_version: "<suite-version-at-run-time>" # e.g. "3.11.1" — the suite version when this run executed
|
|
49
|
+
|
|
50
|
+
model:
|
|
51
|
+
family: claude # provider family
|
|
52
|
+
id: "<model-id-at-run-time>" # model identifier at run time, e.g. the inherited Claude Code session model (not weight hash)
|
|
53
|
+
weight_stable: false # always false until signed attestation exists
|
|
54
|
+
|
|
55
|
+
prompts:
|
|
56
|
+
hash_timing: skill-load # when hashes were taken
|
|
57
|
+
skill_md_hash: "sha256:..." # hash of the skill SKILL.md file
|
|
58
|
+
agents_bundle_hash: "sha256:..." # hash of agent prompt bundle
|
|
59
|
+
|
|
60
|
+
materials:
|
|
61
|
+
list_hash: "sha256:..." # hash of [{filename, sha256}, ...] manifest
|
|
62
|
+
count: 8 # number of session materials
|
|
63
|
+
|
|
64
|
+
external_protocols:
|
|
65
|
+
s2_api_protocol_version: "<s2-protocol-version-at-run-time>" # the S2 query protocol version that ran
|
|
66
|
+
s2_snapshot_available: false # whether a response cache exists
|
|
67
|
+
|
|
68
|
+
cross_model:
|
|
69
|
+
enabled: false # whether cross-model verification ran
|
|
70
|
+
secondary_model_id: null # secondary model id if enabled
|
|
71
|
+
```
|
|
72
|
+
|
|
73
|
+
The block lives as an optional child of the Material Passport (Schema 9 in
|
|
74
|
+
`shared/handoff_schemas.md`). A missing key fails the lint. A null value passes with a
|
|
75
|
+
warning. A populated block with all required sub-fields passes silently.
|
|
76
|
+
|
|
77
|
+
## Field-by-field rationale
|
|
78
|
+
|
|
79
|
+
### schema_version
|
|
80
|
+
|
|
81
|
+
`"1.0"` currently supported. Schema evolution policy: breaking changes bump major,
|
|
82
|
+
additions bump minor. Old readers fail loudly on unknown versions — `check_repro_lock.py`
|
|
83
|
+
will exit 1 if it encounters an unrecognized version, forcing the user to upgrade their
|
|
84
|
+
tooling or audit the change manually.
|
|
85
|
+
|
|
86
|
+
### ars_version
|
|
87
|
+
|
|
88
|
+
Suite version from CHANGELOG. This couples the prompt hashes to the release: changing
|
|
89
|
+
`ars_version` will change the bundle hash even if individual prompt files didn't change.
|
|
90
|
+
That coupling is intentional — version boundaries mark coordinated changes.
|
|
91
|
+
|
|
92
|
+
### model.weight_stable
|
|
93
|
+
|
|
94
|
+
Currently always `false`. Reserved for a future world where a provider guarantees weight
|
|
95
|
+
stability with a signed attestation. Not today. If you see `true`, treat it as suspicious
|
|
96
|
+
until a signed attestation mechanism exists.
|
|
97
|
+
|
|
98
|
+
### prompts.hash_timing
|
|
99
|
+
|
|
100
|
+
Fixed at `"skill-load"` in v1.0. A future `"per-call"` variant would require runtime
|
|
101
|
+
instrumentation not present today. The spec is left open for future work. For now, the
|
|
102
|
+
hash captures the state of files at skill initialization, not at every agent invocation.
|
|
103
|
+
|
|
104
|
+
### materials.list_hash
|
|
105
|
+
|
|
106
|
+
Hash of a sorted manifest: `[{filename, sha256}, ...]` sorted by filename. If the user
|
|
107
|
+
edits a session material between runs, the hash changes — which is the correct behavior.
|
|
108
|
+
An identical hash across two runs means the input materials were identical; different
|
|
109
|
+
hashes mean inputs diverged.
|
|
110
|
+
|
|
111
|
+
### external_protocols.s2_snapshot_available
|
|
112
|
+
|
|
113
|
+
Almost always `false` today. If a future version of the pipeline caches S2 responses per
|
|
114
|
+
run and stores them alongside the passport, this flag flips to `true` and the snapshot path
|
|
115
|
+
appears in the passport. Until that exists, S2 responses are live queries and are not
|
|
116
|
+
reproducible.
|
|
117
|
+
|
|
118
|
+
## How it composes with existing infrastructure
|
|
119
|
+
|
|
120
|
+
- Material Passport (Schema 9) is the PARENT document. `repro_lock` is an OPTIONAL CHILD
|
|
121
|
+
field. A passport without `repro_lock` fails the v3.3.5+ lint; a passport with
|
|
122
|
+
`repro_lock: null` passes with a warning (explicit opt-out).
|
|
123
|
+
- Existing passports with `repro_lock` absent fail the new lint. Existing passports with
|
|
124
|
+
`repro_lock: null` pass with a warning. Populated blocks pass silently.
|
|
125
|
+
- The integrity gate (Stage 2.5, Stage 4.5 in the academic pipeline) does NOT read
|
|
126
|
+
`repro_lock`. The lock is for post-hoc reproducibility investigation, not runtime
|
|
127
|
+
validation. Adding it does not change pipeline behavior.
|
|
128
|
+
- `check_repro_lock.py` can be run standalone on any passport file. It is not wired into
|
|
129
|
+
the CI lint suite by default — it validates on-demand against specific passport files.
|
|
130
|
+
|
|
131
|
+
## Red flags when reading a populated repro_lock
|
|
132
|
+
|
|
133
|
+
- `model.weight_stable: true` — this value is not implemented yet; if you see it, the
|
|
134
|
+
passport author is claiming something the infrastructure cannot verify. Treat as
|
|
135
|
+
suspicious until a signed attestation mechanism exists.
|
|
136
|
+
- `prompts.hash_timing` anything other than `"skill-load"` — this is an unknown variant
|
|
137
|
+
that the current tooling does not understand. The lint will not flag it as invalid, but
|
|
138
|
+
the semantics are undefined.
|
|
139
|
+
- Empty or stub hashes (`"sha256:"` prefix with no content, or a short placeholder string
|
|
140
|
+
like `"sha256:abc123"`) — the generator was broken or the author filled in a placeholder.
|
|
141
|
+
Hashes should be 64-character hex strings for SHA-256.
|
|
142
|
+
- `stochasticity_declaration` modified from the verbatim required string — the author is
|
|
143
|
+
signalling they believe the lock is stronger than it is. Read the entire passport twice
|
|
144
|
+
before trusting any claims about reproducibility.
|
|
145
|
+
|
|
146
|
+
## How to generate a lock (for agent authors)
|
|
147
|
+
|
|
148
|
+
At skill-load time, compute `skill_md_hash` over the SKILL.md content and
|
|
149
|
+
`agents_bundle_hash` over the concatenated agent prompts (canonical ordering). Build the
|
|
150
|
+
materials manifest by listing session files with their SHA-256 digests, sort by filename,
|
|
151
|
+
then hash the JSON serialization. Write the block to the passport before handing off to
|
|
152
|
+
downstream stages. The `stochasticity_declaration` must be included verbatim — do not
|
|
153
|
+
paraphrase or abbreviate it.
|
|
154
|
+
|
|
155
|
+
## Honesty red line (restate)
|
|
156
|
+
|
|
157
|
+
This pattern enables HONEST DOCUMENTATION. It does not enable REPLAY. Every field has a
|
|
158
|
+
reason and a limitation. Users who treat the lock as a replay guarantee will be burned.
|
|
159
|
+
Authors who publish passports without `stochasticity_declaration` are failing their readers.
|
|
160
|
+
The locked configuration tells you what ran; it cannot tell you what would run again.
|
|
161
|
+
|
|
162
|
+
The distinction matters: documentation lets a third party investigate what happened and
|
|
163
|
+
ask whether divergence is expected or alarming. Replay would require weight-frozen models,
|
|
164
|
+
deterministic schedulers, and cached external data — none of which ARS controls today.
|
|
165
|
+
|
|
166
|
+
## Future evolution
|
|
167
|
+
|
|
168
|
+
- v1.1: add `cache_snapshot_available: true` support once the pipeline caches S2 responses.
|
|
169
|
+
The snapshot path would appear as a sibling field in `external_protocols`.
|
|
170
|
+
- v2.0: if weight-signed attestations exist, `model.weight_stable: true` becomes meaningful.
|
|
171
|
+
Until then the field is reserved.
|
|
172
|
+
- Never: byte-level replay guarantees. LLMs don't work like that; no schema version will
|
|
173
|
+
change that fact.
|
|
@@ -0,0 +1,81 @@
|
|
|
1
|
+
{
|
|
2
|
+
"$schema": "https://json-schema.org/draft/2020-12/schema",
|
|
3
|
+
"$id": "https://github.com/Imbad0202/academic-research-skills/shared/benchmark_report.schema.json",
|
|
4
|
+
"title": "ARS Benchmark Report",
|
|
5
|
+
"type": "object",
|
|
6
|
+
"required": [
|
|
7
|
+
"ars_version",
|
|
8
|
+
"task_definition",
|
|
9
|
+
"human_baseline",
|
|
10
|
+
"ars_run",
|
|
11
|
+
"metrics",
|
|
12
|
+
"caveats"
|
|
13
|
+
],
|
|
14
|
+
"properties": {
|
|
15
|
+
"ars_version": {
|
|
16
|
+
"type": "string",
|
|
17
|
+
"pattern": "^\\d+\\.\\d+\\.\\d+$",
|
|
18
|
+
"description": "Exact ARS version the benchmark was run against"
|
|
19
|
+
},
|
|
20
|
+
"task_definition": {
|
|
21
|
+
"type": "object",
|
|
22
|
+
"required": ["description", "task_type", "outcome_gradable"],
|
|
23
|
+
"properties": {
|
|
24
|
+
"description": { "type": "string", "minLength": 1 },
|
|
25
|
+
"task_type": { "enum": ["outcome-gradable", "open-ended"] },
|
|
26
|
+
"outcome_gradable": { "type": "boolean" }
|
|
27
|
+
}
|
|
28
|
+
},
|
|
29
|
+
"human_baseline": {
|
|
30
|
+
"type": "object",
|
|
31
|
+
"required": ["sample_size", "author_independence", "hours_spent", "recruitment", "tools_allowed"],
|
|
32
|
+
"properties": {
|
|
33
|
+
"sample_size": { "type": "integer", "minimum": 1 },
|
|
34
|
+
"author_independence": {
|
|
35
|
+
"enum": ["author-conducted", "author-blinded", "third-party-conducted"],
|
|
36
|
+
"description": "author-conducted means the benchmark creators also did the human baseline (downward bias risk)"
|
|
37
|
+
},
|
|
38
|
+
"hours_spent": { "type": "number", "minimum": 0 },
|
|
39
|
+
"recruitment": { "type": "string", "minLength": 1 },
|
|
40
|
+
"tools_allowed": {
|
|
41
|
+
"type": "array",
|
|
42
|
+
"items": { "type": "string", "minLength": 1 },
|
|
43
|
+
"minItems": 1
|
|
44
|
+
}
|
|
45
|
+
}
|
|
46
|
+
},
|
|
47
|
+
"ars_run": {
|
|
48
|
+
"type": "object",
|
|
49
|
+
"required": ["hours_spent", "cost_usd", "skills_used", "data_access_level_declared"],
|
|
50
|
+
"properties": {
|
|
51
|
+
"hours_spent": { "type": "number", "minimum": 0 },
|
|
52
|
+
"cost_usd": { "type": "number", "minimum": 0 },
|
|
53
|
+
"skills_used": {
|
|
54
|
+
"type": "array",
|
|
55
|
+
"items": { "type": "string" },
|
|
56
|
+
"minItems": 1
|
|
57
|
+
},
|
|
58
|
+
"data_access_level_declared": {
|
|
59
|
+
"enum": ["raw", "redacted", "verified_only"]
|
|
60
|
+
}
|
|
61
|
+
}
|
|
62
|
+
},
|
|
63
|
+
"metrics": {
|
|
64
|
+
"type": "object",
|
|
65
|
+
"required": ["primary_metric", "primary_metric_value", "scoring_independence"],
|
|
66
|
+
"properties": {
|
|
67
|
+
"primary_metric": { "type": "string", "minLength": 1 },
|
|
68
|
+
"primary_metric_value": { "type": "number" },
|
|
69
|
+
"scoring_independence": {
|
|
70
|
+
"enum": ["authors-scored", "third-party-scored", "blind-scored", "self-scored"]
|
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"caveats": {
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"minItems": 1,
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"description": "Known limitations. Empty array not permitted — honest disclosure required."
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# Benchmark Report Pattern (v3.3.5+)
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**Status**: v3.3.5 — hub doc for benchmark disclosure schema
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**Schema**: `shared/benchmark_report.schema.json`
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**Validator**: `scripts/check_benchmark_report.py`
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**Template**: `examples/benchmark_report_template.json`
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---
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## Why this exists
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The Anthropic automated-w2s-researcher (2026) paper headlined a performance comparison:
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"2 researchers × 7 days (PGR=0.23) vs 9 agents × 5 days (PGR=0.97)."
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Dramatic. Also: n=2, author-conducted, no independence, self-scored. Not a scientific
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comparison — a presentation artifact. The authors knew what the agent would produce before
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sitting down to do the human baseline; their "7 days" is implicitly benchmarked against
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their own foreknowledge. Unaware external researchers doing the same task cold would
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likely score higher. The gap may partly be a sandbagged human baseline.
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ARS inherits this risk the moment a user publishes an "ARS beats manual" claim. This
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pattern defines a mandatory schema for anyone publishing an ARS benchmark comparison.
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Reports that don't satisfy the schema aren't "ARS benchmarks" — they're anecdotes.
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---
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## The schema at a glance
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Six required top-level fields in `benchmark_report.schema.json`:
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- **`ars_version`** — exact semver the benchmark ran against; ties results to a specific
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skill version so readers can check whether that version is still current.
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- **`task_definition`** — description, task_type (outcome-gradable or open-ended), and
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outcome_gradable flag; distinguishes rubric-scored tasks from genuinely open-ended ones.
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- **`human_baseline`** — the five provenance fields that determine whether the human side
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of the comparison is credible (see field-by-field rationale below).
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- **`ars_run`** — cost, time, skills used, and declared data access level; lets readers
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check the "agents are cheap" or "agents are fast" claims against concrete numbers.
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- **`metrics`** — primary metric name, numeric value, and scoring independence; forces
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explicit disclosure of who scored the outputs.
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- **`caveats`** — non-empty array of known limitations; at least one honest statement is
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required by schema enforcement.
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---
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## Field-by-field rationale
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### `human_baseline`
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This block exists because the human side of a comparison is where benchmark credibility
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lives or dies. A weak human baseline inflates an agent's apparent advantage.
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- **`sample_size`** (integer, minimum 1): Schema rejects zero, forces an explicit number.
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n=1 or n=2 get a validator warning rather than a hard failure — some tasks are
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expert-bounded — but the number must be stated. Silence is worse than admitting n=1.
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- **`author_independence`** (enum: author-conducted | author-blinded | third-party-conducted):
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`author-conducted` is the "2 authors did it themselves" trap: allowed, but the schema
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flags the downward-bias risk. Authors know what a good ARS output looks like; their
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human effort is calibrated against that prior. `author-blinded` (authors worked without
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seeing ARS outputs first) is better. `third-party-conducted` eliminates experimenter
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bias entirely.
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- **`hours_spent`** (number, minimum 0): Lets third parties sanity-check the time claim.
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"7 days" reads differently against 20 papers versus 400.
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- **`recruitment`** (non-empty string): One sentence forces self-description of selection
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bias. "Authors," "hired on Upwork," "convenience sample" are all honest. Blank is not
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permitted.
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- **`tools_allowed`** (array of strings): "No tools" vs "ChatGPT allowed" is not the same
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comparison as ARS. If the human baseline used no AI assistance while ARS ran full
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pipeline, the comparison is testing infrastructure access, not cognitive quality.
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### `ars_run`
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- **`cost_usd`** (number, minimum 0): A run costing $500 in API tokens is not "cheap"
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just because it took 3 hours. Hours and cost together are needed for a fair comparison.
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- **`data_access_level_declared`** (enum: raw | redacted | verified_only): If ARS ran
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on `raw` data while the human baseline used redacted data, the benchmark is testing
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data privilege, not skill. Cross-references ground-truth isolation from v3.3.2.
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- **`skills_used`** (array, minItems 1): A benchmark running `academic-pipeline`
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full-mode is not comparable to one running only `deep-research`. Both are ARS;
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they're different scope claims.
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### `metrics.scoring_independence`
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Four enum values: `authors-scored`, `third-party-scored`, `blind-scored`, `self-scored`.
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`self-scored` parses and exits 0, but the validator emits a warning to stderr. Self-scoring
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is the worst-case alignment failure: the same agents that produced the output are being
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asked whether the output is good. `blind-scored` (human raters without knowledge of which
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output came from ARS versus human baseline) is the minimum credible standard for any
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claim that will be shared publicly.
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### `caveats`
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Non-empty array, items non-empty strings, minItems 1. The schema physically prevents an
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empty caveats field. A benchmark report with no caveats either has no known limitations
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(implausible for any real-world evaluation) or the author didn't think about limitations
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(which disqualifies the report more than any specific limitation would).
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The caveats field is where sample size warnings, scorer bias, task-selection bias, and
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tool-access asymmetries should land when they don't rise to schema errors. It is the
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honest disclosure box.
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---
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## How to use
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1. Copy `examples/benchmark_report_template.json` to your benchmark directory.
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2. Fill every `FILL IN:` field with real values.
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3. Set `human_baseline.sample_size` to the actual number (schema rejects 0).
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4. Run: `python scripts/check_benchmark_report.py your-report.json`
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5. Fix all `ERROR:` lines (schema violations, exit 1).
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6. Read the `WARNING:` lines (stderr, exit 0). Either address them in your methodology or
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document them explicitly in the `caveats` array.
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7. Publish the JSON file in your repository alongside the benchmark write-up. The
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machine-readable format lets future scripts cross-check version-specific claims.
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---
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## What this pattern is NOT
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- **Not a quality gate for your methodology.** A report can be schema-valid and still be
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methodologically weak. The schema forces disclosure; it does not evaluate task choice,
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rubric validity, or baseline skill. Compliance is necessary but not sufficient.
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- **Not a way to launder self-scored or n=2 comparisons.** `self-scored` and
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`sample_size: 2` produce a valid document. The warnings are loud. Schema compliance
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means the claim is honest about its weaknesses — not that the claim is strong.
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- **Not a substitute for peer review.** The schema is the minimum bar for internal
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credibility. Peer review catches confounded variables, cherry-picked tasks, post-hoc
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metric selection — problems the schema cannot see.
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- **Not frozen.** A benchmark declaring `ars_version: 3.3.5` is always checked against
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the v3.3.5 schema. Future versions may add fields without invalidating existing reports.
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---
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## Honesty red lines
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These are behaviors the schema is specifically designed to make visible. They are not
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prohibited — the schema accepts all of them — but they will appear in validator output
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or be apparent to any reader of the JSON.
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- **Omitting sample size.** The field is required. There is no valid ARS benchmark report
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without a stated `human_baseline.sample_size`. n=1 is worse than n=10, but it is
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infinitely better than unstated.
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- **Author-conducted with no caveat disclosure.** Using `author-conducted` is allowed.
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Not noting it in `caveats` as a limitation is an editorial failure, not a schema
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failure — but reviewers will notice.
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- **Self-scoring with no warning acknowledgment.** `self-scored` produces a warning on
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every validator run. If you publish a report with `self-scored` and don't address it
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in caveats, the omission is visible in the JSON to anyone who checks.
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- **Empty or single-word caveats.** The schema requires `minLength: 1` per item and
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`minItems: 1` for the array. A caveat of `"none"` is technically valid but signals
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that the author did not engage seriously with limitations.
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- **Claiming ARS advantage without disclosing cost_usd.** The field is required. A claim
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that "ARS completed this in 4 hours vs 40 human hours" without a dollar figure omits
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the dimension where the trade-off may be reversed.
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---
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## Future evolution
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Per-skill benchmark templates (a `deep-research`-specific template, an
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`academic-paper-reviewer`-specific template) are likely as v3.4 adds domain-specific
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evaluation protocols. The `cost_usd` field may split into `cost_usd_api` and
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`cost_usd_compute` once cloud execution costs become a factor. The
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`data_access_level_declared` enum may expand to match the v3.4 ground-truth tier
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vocabulary if that spec evolves. None of these changes will break existing v3.3.5
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reports, which remain valid against the version they declared in `ars_version`.
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