psyclaw 0.27.22 → 0.28.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1048) hide show
  1. package/README.md +11 -5
  2. package/dist/apps/panel/index.html +2 -2
  3. package/dist/src/adapters/pi/extension.js +225 -92
  4. package/dist/src/adapters/pi/extension.js.map +1 -1
  5. package/dist/src/agents/import.js +44 -32
  6. package/dist/src/agents/import.js.map +1 -1
  7. package/dist/src/analysis/hooks.d.ts +1 -0
  8. package/dist/src/analysis/hooks.js +20 -1
  9. package/dist/src/analysis/hooks.js.map +1 -1
  10. package/dist/src/ars/bridge.d.ts +20 -0
  11. package/dist/src/ars/bridge.js +132 -0
  12. package/dist/src/ars/bridge.js.map +1 -0
  13. package/dist/src/ars/contracts.d.ts +55 -0
  14. package/dist/src/ars/contracts.js +2 -0
  15. package/dist/src/ars/contracts.js.map +1 -0
  16. package/dist/src/ars/panel-plan.d.ts +4 -0
  17. package/dist/src/ars/panel-plan.js +11 -0
  18. package/dist/src/ars/panel-plan.js.map +1 -0
  19. package/dist/src/ars/pi-panel-executor.d.ts +30 -0
  20. package/dist/src/ars/pi-panel-executor.js +140 -0
  21. package/dist/src/ars/pi-panel-executor.js.map +1 -0
  22. package/dist/src/ars/profile.d.ts +36 -0
  23. package/dist/src/ars/profile.js +119 -0
  24. package/dist/src/ars/profile.js.map +1 -0
  25. package/dist/src/ars/re-review.d.ts +22 -0
  26. package/dist/src/ars/re-review.js +172 -0
  27. package/dist/src/ars/re-review.js.map +1 -0
  28. package/dist/src/branding.d.ts +2 -4
  29. package/dist/src/branding.js +3 -5
  30. package/dist/src/branding.js.map +1 -1
  31. package/dist/src/bundled-tools.d.ts +3 -0
  32. package/dist/src/bundled-tools.js +21 -0
  33. package/dist/src/bundled-tools.js.map +1 -0
  34. package/dist/src/chat.js +6 -5
  35. package/dist/src/chat.js.map +1 -1
  36. package/dist/src/creation/contracts.d.ts +38 -0
  37. package/dist/src/creation/contracts.js +2 -0
  38. package/dist/src/creation/contracts.js.map +1 -0
  39. package/dist/src/creation/service.d.ts +7 -0
  40. package/dist/src/creation/service.js +196 -0
  41. package/dist/src/creation/service.js.map +1 -0
  42. package/dist/src/index.d.ts +10 -0
  43. package/dist/src/index.js +10 -0
  44. package/dist/src/index.js.map +1 -1
  45. package/dist/src/install/installer.js +32 -10
  46. package/dist/src/install/installer.js.map +1 -1
  47. package/dist/src/orchestration/personas.d.ts +15 -0
  48. package/dist/src/orchestration/personas.js +51 -0
  49. package/dist/src/orchestration/personas.js.map +1 -0
  50. package/dist/src/orchestration/pi-executor.d.ts +1 -0
  51. package/dist/src/orchestration/pi-executor.js +1 -1
  52. package/dist/src/orchestration/pi-executor.js.map +1 -1
  53. package/dist/src/panel/extension.js +29 -8
  54. package/dist/src/panel/extension.js.map +1 -1
  55. package/dist/src/panel/server.js +14 -5
  56. package/dist/src/panel/server.js.map +1 -1
  57. package/dist/src/project/paths.d.ts +3 -0
  58. package/dist/src/project/paths.js +7 -0
  59. package/dist/src/project/paths.js.map +1 -1
  60. package/dist/src/rules/user-rules.d.ts +8 -0
  61. package/dist/src/rules/user-rules.js +36 -0
  62. package/dist/src/rules/user-rules.js.map +1 -0
  63. package/dist/src/skills/contracts.d.ts +4 -4
  64. package/dist/src/skills/recommended.js +1 -1
  65. package/dist/src/skills/registry.js +49 -28
  66. package/dist/src/skills/registry.js.map +1 -1
  67. package/dist/src/style/cli-ui.js +0 -1
  68. package/dist/src/style/cli-ui.js.map +1 -1
  69. package/package.json +14 -3
  70. package/scripts/rebrand-pi.mjs +6 -0
  71. package/skills/recommended/catalog.json +2 -11
  72. package/vendor/ars/.claude/CLAUDE.md +371 -0
  73. package/vendor/ars/.command-invariants.toml +24 -0
  74. package/vendor/ars/CITATION.cff +35 -0
  75. package/vendor/ars/LICENSE +417 -0
  76. package/vendor/ars/MODE_REGISTRY.md +76 -0
  77. package/vendor/ars/NOTICE.md +26 -0
  78. package/vendor/ars/POSITIONING.md +99 -0
  79. package/vendor/ars/PSYCLAW_SOURCE.json +10 -0
  80. package/vendor/ars/README.md +751 -0
  81. package/vendor/ars/SECURITY.md +52 -0
  82. package/vendor/ars/THIRD_PARTY.md +70 -0
  83. package/vendor/ars/academic-paper/SKILL.md +542 -0
  84. package/vendor/ars/academic-paper/agents/abstract_bilingual_agent.md +171 -0
  85. package/vendor/ars/academic-paper/agents/argument_builder_agent.md +276 -0
  86. package/vendor/ars/academic-paper/agents/citation_compliance_agent.md +422 -0
  87. package/vendor/ars/academic-paper/agents/draft_writer_agent.md +656 -0
  88. package/vendor/ars/academic-paper/agents/formatter_agent.md +999 -0
  89. package/vendor/ars/academic-paper/agents/intake_agent.md +393 -0
  90. package/vendor/ars/academic-paper/agents/literature_strategist_agent.md +626 -0
  91. package/vendor/ars/academic-paper/agents/peer_reviewer_agent.md +516 -0
  92. package/vendor/ars/academic-paper/agents/revision_coach_agent.md +334 -0
  93. package/vendor/ars/academic-paper/agents/socratic_mentor_agent.md +527 -0
  94. package/vendor/ars/academic-paper/agents/structure_architect_agent.md +401 -0
  95. package/vendor/ars/academic-paper/agents/visualization_agent.md +441 -0
  96. package/vendor/ars/academic-paper/examples/chinese_paper_example.md +278 -0
  97. package/vendor/ars/academic-paper/examples/clinical_citation_verification_checklist.md +95 -0
  98. package/vendor/ars/academic-paper/examples/clinical_epistemic_status_example.md +100 -0
  99. package/vendor/ars/academic-paper/examples/commitment_ledger_example.md +147 -0
  100. package/vendor/ars/academic-paper/examples/imrad_hei_example.md +234 -0
  101. package/vendor/ars/academic-paper/examples/literature_review_example.md +260 -0
  102. package/vendor/ars/academic-paper/examples/plan_mode_guided_writing.md +600 -0
  103. package/vendor/ars/academic-paper/examples/revision_mode_example.md +344 -0
  104. package/vendor/ars/academic-paper/examples/revision_recovery_example.md +506 -0
  105. package/vendor/ars/academic-paper/examples/version_family_reconciliation_example.md +89 -0
  106. package/vendor/ars/academic-paper/references/abstract_writing_guide.md +169 -0
  107. package/vendor/ars/academic-paper/references/academic_writing_style.md +188 -0
  108. package/vendor/ars/academic-paper/references/anti_leakage_protocol.md +83 -0
  109. package/vendor/ars/academic-paper/references/apa7_chinese_citation_guide.md +364 -0
  110. package/vendor/ars/academic-paper/references/apa7_extended_guide.md +198 -0
  111. package/vendor/ars/academic-paper/references/changelog.md +11 -0
  112. package/vendor/ars/academic-paper/references/citation_format_switcher.md +228 -0
  113. package/vendor/ars/academic-paper/references/committee_correspondence_protocol.md +158 -0
  114. package/vendor/ars/academic-paper/references/credit_authorship_guide.md +308 -0
  115. package/vendor/ars/academic-paper/references/disclosure_mode_protocol.md +478 -0
  116. package/vendor/ars/academic-paper/references/domain_evidence_profiles.md +38 -0
  117. package/vendor/ars/academic-paper/references/failure_paths.md +349 -0
  118. package/vendor/ars/academic-paper/references/funding_statement_guide.md +319 -0
  119. package/vendor/ars/academic-paper/references/hei_domain_glossary.md +169 -0
  120. package/vendor/ars/academic-paper/references/intro_title_rhetoric_guide.md +114 -0
  121. package/vendor/ars/academic-paper/references/journal_submission_guide.md +249 -0
  122. package/vendor/ars/academic-paper/references/latex_template_reference.md +378 -0
  123. package/vendor/ars/academic-paper/references/mode_selection_guide.md +378 -0
  124. package/vendor/ars/academic-paper/references/paper_structure_patterns.md +330 -0
  125. package/vendor/ars/academic-paper/references/plan_mode_protocol.md +112 -0
  126. package/vendor/ars/academic-paper/references/policy_anchor_disclosure_protocol.md +200 -0
  127. package/vendor/ars/academic-paper/references/policy_anchor_table.md +157 -0
  128. package/vendor/ars/academic-paper/references/revision_patch_protocol.md +173 -0
  129. package/vendor/ars/academic-paper/references/statistical_visualization_standards.md +750 -0
  130. package/vendor/ars/academic-paper/references/venue_disclosure_policies.md +259 -0
  131. package/vendor/ars/academic-paper/references/vlm_figure_verification.md +126 -0
  132. package/vendor/ars/academic-paper/references/workflow_phase_details.md +135 -0
  133. package/vendor/ars/academic-paper/references/writing_judgment_framework.md +59 -0
  134. package/vendor/ars/academic-paper/references/writing_quality_check.md +173 -0
  135. package/vendor/ars/academic-paper/templates/bilingual_abstract_template.md +78 -0
  136. package/vendor/ars/academic-paper/templates/case_study_template.md +129 -0
  137. package/vendor/ars/academic-paper/templates/conference_paper_template.md +108 -0
  138. package/vendor/ars/academic-paper/templates/credit_statement_template.md +132 -0
  139. package/vendor/ars/academic-paper/templates/funding_statement_template.md +290 -0
  140. package/vendor/ars/academic-paper/templates/imrad_template.md +183 -0
  141. package/vendor/ars/academic-paper/templates/latex_article_template.tex +199 -0
  142. package/vendor/ars/academic-paper/templates/literature_review_template.md +135 -0
  143. package/vendor/ars/academic-paper/templates/policy_brief_template.md +139 -0
  144. package/vendor/ars/academic-paper/templates/revision_tracking_template.md +199 -0
  145. package/vendor/ars/academic-paper/templates/theoretical_paper_template.md +119 -0
  146. package/vendor/ars/academic-paper-reviewer/SKILL.md +491 -0
  147. package/vendor/ars/academic-paper-reviewer/agents/devils_advocate_reviewer_agent.md +443 -0
  148. package/vendor/ars/academic-paper-reviewer/agents/domain_reviewer_agent.md +412 -0
  149. package/vendor/ars/academic-paper-reviewer/agents/editorial_synthesizer_agent.md +478 -0
  150. package/vendor/ars/academic-paper-reviewer/agents/eic_agent.md +339 -0
  151. package/vendor/ars/academic-paper-reviewer/agents/field_analyst_agent.md +221 -0
  152. package/vendor/ars/academic-paper-reviewer/agents/methodology_reviewer_agent.md +449 -0
  153. package/vendor/ars/academic-paper-reviewer/agents/perspective_reviewer_agent.md +427 -0
  154. package/vendor/ars/academic-paper-reviewer/examples/hei_paper_review_example.md +391 -0
  155. package/vendor/ars/academic-paper-reviewer/examples/interdisciplinary_review_example.md +299 -0
  156. package/vendor/ars/academic-paper-reviewer/examples/subclaim_decomposition_example.md +80 -0
  157. package/vendor/ars/academic-paper-reviewer/references/calibration_mode_protocol.md +256 -0
  158. package/vendor/ars/academic-paper-reviewer/references/changelog.md +10 -0
  159. package/vendor/ars/academic-paper-reviewer/references/editorial_decision_standards.md +236 -0
  160. package/vendor/ars/academic-paper-reviewer/references/guided_mode_protocol.md +34 -0
  161. package/vendor/ars/academic-paper-reviewer/references/integration_guide.md +15 -0
  162. package/vendor/ars/academic-paper-reviewer/references/quality_rubrics.md +84 -0
  163. package/vendor/ars/academic-paper-reviewer/references/re_review_mode_protocol.md +340 -0
  164. package/vendor/ars/academic-paper-reviewer/references/review_criteria_framework.md +98 -0
  165. package/vendor/ars/academic-paper-reviewer/references/review_panel_provenance_protocol.md +197 -0
  166. package/vendor/ars/academic-paper-reviewer/references/review_quality_thinking.md +58 -0
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  169. package/vendor/ars/academic-paper-reviewer/references/statistical_reporting_standards.md +505 -0
  170. package/vendor/ars/academic-paper-reviewer/references/top_journals_by_field.md +206 -0
  171. package/vendor/ars/academic-paper-reviewer/templates/editorial_decision_template.md +235 -0
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  175. package/vendor/ars/academic-pipeline/agents/claim_ref_alignment_audit_agent.md +382 -0
  176. package/vendor/ars/academic-pipeline/agents/collaboration_depth_agent.md +164 -0
  177. package/vendor/ars/academic-pipeline/agents/integrity_verification_agent.md +870 -0
  178. package/vendor/ars/academic-pipeline/agents/pipeline_orchestrator_agent.md +1379 -0
  179. package/vendor/ars/academic-pipeline/agents/state_tracker_agent.md +622 -0
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  181. package/vendor/ars/academic-pipeline/examples/integrity_failure_recovery.md +389 -0
  182. package/vendor/ars/academic-pipeline/examples/mid_entry_example.md +414 -0
  183. package/vendor/ars/academic-pipeline/references/adapters/.gitkeep +0 -0
  184. package/vendor/ars/academic-pipeline/references/adapters/overview.md +153 -0
  185. package/vendor/ars/academic-pipeline/references/ai_research_failure_modes.md +185 -0
  186. package/vendor/ars/academic-pipeline/references/changelog.md +14 -0
  187. package/vendor/ars/academic-pipeline/references/claim_audit_calibration_protocol.md +175 -0
  188. package/vendor/ars/academic-pipeline/references/claim_verification_protocol.md +282 -0
  189. package/vendor/ars/academic-pipeline/references/external_review_protocol.md +131 -0
  190. package/vendor/ars/academic-pipeline/references/integrity_review_protocol.md +110 -0
  191. package/vendor/ars/academic-pipeline/references/literature_corpus_consumers.md +193 -0
  192. package/vendor/ars/academic-pipeline/references/mode_advisor.md +135 -0
  193. package/vendor/ars/academic-pipeline/references/passport_as_reset_boundary.md +132 -0
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  204. package/vendor/ars/agents/report_compiler_agent.md +341 -0
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  207. package/vendor/ars/commands/ars-3w.md +10 -0
  208. package/vendor/ars/commands/ars-abstract.md +10 -0
  209. package/vendor/ars/commands/ars-cache-invalidate.md +20 -0
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  213. package/vendor/ars/commands/ars-full.md +9 -0
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@@ -0,0 +1,228 @@
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+ # Citation Format Switcher — Multi-Citation Format Switching
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+
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+ Quick-reference for switching between 5 citation formats. Used by `citation_compliance_agent` and `formatter_agent`.
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+
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+ ## Format Comparison Matrix
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+
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+ ### In-Text Citation Patterns
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+
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+ | Scenario | APA 7th | Chicago (Notes) | Chicago (Author-Date) | MLA 9th | IEEE | Vancouver |
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+ |----------|---------|-----------------|----------------------|---------|------|-----------|
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+ | Single author | (Smith, 2024) | ¹ (footnote) | (Smith 2024) | (Smith 45) | [1] | ¹ (superscript) |
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+ | Two authors | (Smith & Jones, 2024) | ¹ | (Smith and Jones 2024) | (Smith and Jones 45) | [1] | ¹ |
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+ | 3+ authors | (Smith et al., 2024) | ¹ | (Smith et al. 2024) | (Smith et al. 45) | [1] | ¹ |
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+ | Direct quote | (Smith, 2024, p. 45) | ¹ | (Smith 2024, 45) | (Smith 45) | [1, p. 45] | ¹⁽ᵖ⁴⁵⁾ |
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+ | Multiple works | (Chen, 2023; Smith, 2024) | ¹ ² | (Chen 2023; Smith 2024) | (Chen 12; Smith 45) | [1], [2] | ¹˒² |
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+ | Order | Alphabetical | Order of appearance | Alphabetical | Alphabetical | Order of appearance | Order of appearance |
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+
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+ ### Reference List Naming
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+
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+ | Format | Section Title | Entry Order |
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+ |--------|--------------|-------------|
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+ | APA 7th | References | Alphabetical |
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+ | Chicago (Notes) | Bibliography | Alphabetical |
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+ | Chicago (Author-Date) | References | Alphabetical |
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+ | MLA 9th | Works Cited | Alphabetical |
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+ | IEEE | References | Order of appearance |
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+ | Vancouver | References | Order of appearance |
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+
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+ ## Format Details
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+
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+ ### APA 7th Edition
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+ **Discipline**: Education, Psychology, Social Sciences
33
+
34
+ **Journal Article**:
35
+ ```
36
+ Smith, J. A., & Jones, B. C. (2024). Article title in sentence case.
37
+ Journal Title in Title Case, 45(2), 123-145. https://doi.org/10.xxxx
38
+ ```
39
+
40
+ **Book**:
41
+ ```
42
+ Smith, J. A. (2024). Book title in sentence case (2nd ed.). Publisher.
43
+ ```
44
+
45
+ **Key rules**: Hanging indent, DOI as URL, sentence case for titles, "&" before last author.
46
+
47
+ ---
48
+
49
+ ### Chicago 17th (Notes-Bibliography)
50
+ **Discipline**: History, Humanities, some Social Sciences
51
+
52
+ **Footnote (first citation)**:
53
+ ```
54
+ 1. John A. Smith and Betty C. Jones, "Article Title in Title Case,"
55
+ Journal Title 45, no. 2 (2024): 123, https://doi.org/10.xxxx.
56
+ ```
57
+
58
+ **Footnote (subsequent)**:
59
+ ```
60
+ 2. Smith and Jones, "Article Title," 130.
61
+ ```
62
+
63
+ **Bibliography entry**:
64
+ ```
65
+ Smith, John A., and Betty C. Jones. "Article Title in Title Case."
66
+ Journal Title 45, no. 2 (2024): 123-145.
67
+ https://doi.org/10.xxxx.
68
+ ```
69
+
70
+ **Key rules**: Full names, title case throughout, footnotes + bibliography, period after URL.
71
+
72
+ ---
73
+
74
+ ### Chicago 17th (Author-Date)
75
+ **Discipline**: Natural Sciences, some Social Sciences
76
+
77
+ **In-text**: (Smith 2024, 45)
78
+
79
+ **Reference**:
80
+ ```
81
+ Smith, John A. 2024. "Article Title in Title Case." Journal Title
82
+ 45 (2): 123-145. https://doi.org/10.xxxx.
83
+ ```
84
+
85
+ **Key rules**: Year after author name, full names in reference, title case.
86
+
87
+ ---
88
+
89
+ ### MLA 9th Edition
90
+ **Discipline**: Literature, Languages, Cultural Studies
91
+
92
+ **In-text**: (Smith 45) — author + page, no comma, no year
93
+
94
+ **Works Cited**:
95
+ ```
96
+ Smith, John A., and Betty C. Jones. "Article Title in Title Case."
97
+ Journal Title, vol. 45, no. 2, 2024, pp. 123-45.
98
+ ```
99
+
100
+ **Key rules**: No year in in-text, page numbers always, containers model, no DOI in basic format (include if online), title case for all titles.
101
+
102
+ ---
103
+
104
+ ### IEEE
105
+ **Discipline**: Engineering, Computer Science, Technology
106
+
107
+ **In-text**: [1] — numbered brackets in order of appearance
108
+
109
+ **Reference**:
110
+ ```
111
+ [1] J. A. Smith and B. C. Jones, "Article title in sentence case,"
112
+ Journal Title, vol. 45, no. 2, pp. 123-145, Feb. 2024,
113
+ doi: 10.xxxx.
114
+ ```
115
+
116
+ **Key rules**: Numbered [N], initials before surname, abbreviated month, "doi:" prefix (not URL).
117
+
118
+ ---
119
+
120
+ ### Vancouver
121
+ **Discipline**: Medicine, Biomedical Sciences, Nursing
122
+
123
+ **In-text**: Superscript numbers ¹ or (1) in order of appearance
124
+
125
+ **Reference**:
126
+ ```
127
+ 1. Smith JA, Jones BC. Article title in sentence case. Journal Title.
128
+ 2024;45(2):123-145. doi:10.xxxx
129
+ ```
130
+
131
+ **Key rules**: Numbered in order of appearance, no spaces in initials, abbreviated journal titles (per NLM), semicolon before volume, colon before pages.
132
+
133
+ ## Conversion Quick Reference
134
+
135
+ ### APA → Chicago (Notes-Bibliography)
136
+ 1. Change in-text (Author, Year) → footnotes
137
+ 2. Expand first names in reference list
138
+ 3. Change sentence case → title case for article titles
139
+ 4. Add period after URLs
140
+ 5. Rename "References" → "Bibliography"
141
+
142
+ ### APA → MLA
143
+ 1. Remove years from in-text, add page numbers
144
+ 2. Expand first names, change "&" → "and"
145
+ 3. Change format: vol., no., year order
146
+ 4. Remove DOIs (unless online-only source)
147
+ 5. Rename "References" → "Works Cited"
148
+
149
+ ### APA → IEEE
150
+ 1. Change (Author, Year) → [N] numbered brackets
151
+ 2. Reorder references by appearance (not alphabetical)
152
+ 3. Change to initials-first format
153
+ 4. Add "doi:" prefix to DOIs
154
+ 5. Abbreviate month names
155
+
156
+ ### APA → Vancouver
157
+ 1. Change (Author, Year) → superscript numbers
158
+ 2. Reorder references by appearance
159
+ 3. Remove spaces between initials
160
+ 4. Abbreviate journal titles (NLM catalog)
161
+ 5. Use semicolons/colons for volume/page separators
162
+
163
+ ## Chinese Citation Format Switching
164
+
165
+ ### APA 7.0 Chinese Format
166
+
167
+ For complete specifications, see `apa7_chinese_citation_guide.md`. Below is a quick reference.
168
+
169
+ **Chinese journal article**:
170
+ ```
171
+ Wang, Da-Ming, & Li, Xiao-Hua (2024). Article title. Journal Name, Volume(Issue), Pages. https://doi.org/xxxxx
172
+ ```
173
+
174
+ **Chinese book**:
175
+ ```
176
+ Zhang, San (2023). Book title. Publisher.
177
+ ```
178
+
179
+ **Government publication**:
180
+ ```
181
+ Ministry of Education (2024). Publication title. https://url
182
+ ```
183
+
184
+ ### Mixed Chinese-English Reference Handling
185
+
186
+ **In-text citations**:
187
+ - Chinese uses full-width parentheses: (Author, Year)
188
+ - English uses half-width parentheses: (Author, Year)
189
+ - Chinese multiple authors use enumeration comma; English uses &
190
+
191
+ **Reference list ordering**:
192
+
193
+ | Option | Description | Applicable Scenario |
194
+ |------|------|---------|
195
+ | **Option A (Recommended)** | Chinese first (ordered by stroke count), English after (ordered alphabetically) | Convention for most Taiwan journals |
196
+ | **Option B** | Mixed Chinese-English ordering (unified stroke count / alphabetical) | Some international journals |
197
+
198
+ **Same author with both Chinese and English works**: List separately — Chinese works go in the Chinese section, English works go in the English section.
199
+
200
+ ### Format Conversion Notes (Chinese Papers)
201
+
202
+ **Chinese APA → Chicago**:
203
+ 1. Publication format differs (APA 7 does not require publication location, Chicago does)
204
+ 2. Change titles to "title case" format
205
+ 3. Add footnote citation system
206
+
207
+ **Chinese APA → IEEE**:
208
+ 1. Add numbered labels [N]
209
+ 2. Remove year from after author position
210
+ 3. Order by citation appearance (not stroke count)
211
+
212
+ **Chinese paper format conventions**:
213
+ - Most Taiwan journals use APA
214
+ - Humanities disciplines (history, literature) occasionally use Chicago
215
+ - Engineering/CS fields mostly use IEEE
216
+ - Medical fields use Vancouver
217
+
218
+ ---
219
+
220
+ ## AI-Generated Content Citation (by Format)
221
+
222
+ | Format | How to Cite AI |
223
+ |--------|---------------|
224
+ | APA 7th | OpenAI. (2024). ChatGPT (Version 4) [Large language model]. https://chat.openai.com |
225
+ | Chicago | OpenAI. ChatGPT. Version 4. 2024. Large language model. https://chat.openai.com. |
226
+ | MLA | "ChatGPT response to [prompt description]." OpenAI, 15 Mar. 2024, chat.openai.com. |
227
+ | IEEE | [N] OpenAI, "ChatGPT," ver. 4, 2024. [Online]. Available: https://chat.openai.com |
228
+ | Vancouver | OpenAI. ChatGPT [Large language model]. 2024. Available from: https://chat.openai.com |
@@ -0,0 +1,158 @@
1
+ # Committee Correspondence Protocol (#668)
2
+
3
+ This is the `committee-correspondence` variant of `academic-paper`
4
+ `revision-coach`. It structures comments already returned by a real committee or
5
+ institutional review office. It never simulates a committee, predicts satisfaction,
6
+ or makes a human-subjects determination.
7
+
8
+ Canonical schema:
9
+ `shared/contracts/human_subjects/committee_correspondence.schema.json`.
10
+ Artifact version: `committee-correspondence/1.0`.
11
+ Deterministic checker: `scripts/check_committee_correspondence.py`.
12
+ Design authority:
13
+ `docs/design/2026-08-08-668-committee-correspondence-spec.md`.
14
+
15
+ ## Activation gate
16
+
17
+ Use this variant only when the user explicitly identifies the input as comments or
18
+ a letter from a real committee/institutional review office and asks for tracking,
19
+ response preparation, or resubmission organization. Do not infer official authority
20
+ from formal tone, letterhead-like prose, words such as “required,” or a file name.
21
+
22
+ If the source is ordinary manuscript peer review, use normal `revision-coach`. If
23
+ the source identity is uncertain, ask the user to identify it before choosing the
24
+ variant. V1 accepts UTF-8 letter text. For a binary PDF/DOCX, retain the user’s
25
+ original file outside this bundle and obtain a UTF-8 export/transcription; label
26
+ that textual source honestly rather than claiming byte identity with the binary.
27
+
28
+ This variant is standalone and separate from paper-review traceability. It MUST NOT:
29
+
30
+ - emit Schema 11 `commitment_extracted` or a peer-review Revision Roadmap;
31
+ - assign Major/Minor/Editorial, P1/P2/P3, severity, or model priority;
32
+ - write to the Material Passport or claim a Stage 4.5 integrity pass;
33
+ - state that a concern is resolved, that a response will satisfy the committee, or
34
+ that any artifact is submission-ready;
35
+ - translate committee wording into another jurisdiction’s taxonomy.
36
+
37
+ ## Required interaction
38
+
39
+ 1. Preserve the supplied UTF-8 text exactly as `source_letter.txt`. Do not normalize
40
+ newlines, whitespace, punctuation, or spelling.
41
+ 2. Segment every byte from zero through EOF into `comment` or `non_comment` rows.
42
+ Headers, sign-offs, decision metadata, and other non-comment text remain visible.
43
+ 3. Show the byte-complete segmentation to the user. The user confirms or corrects
44
+ comment boundaries before the tracker is final.
45
+ 4. Create one concern per confirmed comment segment in source order. A compound
46
+ comment remains one concern with multiple `action_type` values. Separately
47
+ numbered subcomments may be separate segments.
48
+ 5. Copy `verbatim_text` from the exact source bytes. Compute all SHA-256 fields and
49
+ byte ranges; do not ask a model to reproduce hashes from memory.
50
+ 6. Classify `authority_status` only from explicit committee language or author
51
+ confirmation. When neither exists, use `unclear` plus an unresolved basis.
52
+ 7. Fill artifact, owner, dependency, and required-before fields only when the letter,
53
+ author, or selected profile supplies them. Empty/unresolved is valid and preferred
54
+ to inference.
55
+ 8. Present the concern records to the user for confirmation. Working views may
56
+ reorder the complete concern set but never replace source order.
57
+ 9. Emit the placeholder-only response skeleton. It contains one concern marker,
58
+ author-response placeholder, and evidence placeholder per concern.
59
+ 10. Run the deterministic checker and report any failure without claiming partial
60
+ completion.
61
+
62
+ ## Bundle layout
63
+
64
+ Use `committee_correspondence/<source_sha256_first_12>/`:
65
+
66
+ ```text
67
+ <12-hex>/
68
+ ├── source_letter.txt
69
+ ├── concern_tracker.json
70
+ └── response_skeleton.md
71
+ ```
72
+
73
+ All tracker paths are bundle-relative. Never point the checker at arbitrary local
74
+ files through a tracker path. Do not use symlinks.
75
+
76
+ ## Classification vocabulary
77
+
78
+ `authority_status` is one of:
79
+
80
+ - `explicitly_required` — the source explicitly requires the action;
81
+ - `conditional` — the source states an if/then or contingent requirement;
82
+ - `question` — the source asks for information without settling the answer;
83
+ - `suggestion` — the source explicitly presents an optional suggestion;
84
+ - `unclear` — none of the above is textually supported or the user has not confirmed.
85
+
86
+ `action_type[]` is multi-valued:
87
+
88
+ - `design`
89
+ - `explanation`
90
+ - `revise_artifact`
91
+ - `add_artifact`
92
+ - `administrative`
93
+ - `legal_or_policy_check`
94
+
95
+ Do not collapse a compound comment into a single label. Do not add a priority or
96
+ severity field. Source order is not priority.
97
+
98
+ ## Optional authority-profile enrichment
99
+
100
+ No selected profile is a supported terminal input state:
101
+
102
+ ```json
103
+ {
104
+ "state": "not_selected",
105
+ "selected_profile_ids": [],
106
+ "artifact_resolution_state": "artifact_agnostic"
107
+ }
108
+ ```
109
+
110
+ When a user later selects a #666 profile, profile-derived artifact names and
111
+ requirement ids carry explicit provenance. The profile cannot rewrite source text,
112
+ authority status, owner, deadline, dependency, or order. A failed lookup uses
113
+ `artifact_resolution_state=unresolved`; it does not silently fall back to another
114
+ jurisdiction.
115
+
116
+ ## Response skeleton
117
+
118
+ The skeleton begins with exactly:
119
+
120
+ ```markdown
121
+ Status: drafting aid — no concern is asserted resolved.
122
+ ```
123
+
124
+ Each concern block uses:
125
+
126
+ ```markdown
127
+ <!-- concern:CC-001 -->
128
+ ### Concern CC-001
129
+
130
+ **Draft response:** [AUTHOR RESPONSE REQUIRED — drafting aid; do not claim resolved]
131
+
132
+ **Evidence:** [EVIDENCE OR ARTIFACT POINTER REQUIRED]
133
+ ```
134
+
135
+ It ends with exactly:
136
+
137
+ ```markdown
138
+ > **Human-subjects boundary:** This output does not authorize recruitment, consent, access to identifiable data, intervention, or data collection.
139
+ ```
140
+
141
+ The skeleton is not a completed response and contains no claim that work occurred.
142
+ During later drafting, keep the original skeleton as the checked baseline; save a
143
+ drafted response as a separate artifact rather than overwriting its hash-bound
144
+ placeholder state.
145
+
146
+ ## Handoff
147
+
148
+ After user confirmation and a passing checker result, hand off both
149
+ `concern_tracker.json` and `response_skeleton.md` to response drafting or
150
+ resubmission work. Downstream work joins on `concern_id` and preserves the source
151
+ locator. Evidence remains absent until the author supplies a real artifact pointer.
152
+
153
+ Run:
154
+
155
+ ```bash
156
+ python scripts/check_committee_correspondence.py \
157
+ committee_correspondence/<12-hex>/concern_tracker.json
158
+ ```
@@ -0,0 +1,308 @@
1
+ # CRediT Authorship Guide
2
+
3
+ Used by `intake_agent`, `formatter_agent`, and `draft_writer_agent`.
4
+
5
+ ## Overview
6
+
7
+ CRediT (Contributor Roles Taxonomy) is a standardized taxonomy of author contributions, co-developed by CASRAI and NISO in 2015. It has now been adopted by over 50 major publishers (Elsevier, Springer Nature, Wiley, Taylor & Francis, PLOS, etc.). CRediT defines 14 contribution roles; each author may be assigned one or more roles, and each role may be undertaken by one or more authors.
8
+
9
+ ---
10
+
11
+ ## CRediT 14 Contribution Roles
12
+
13
+ ### 1. Conceptualization
14
+
15
+ **Definition**: Ideas; formulation or evolution of overarching research goals and aims.
16
+
17
+ **Higher Education Research Context Examples**:
18
+ - Proposing the research concept of "the impact of declining birthrate on private university management strategies"
19
+ - Establishing the research question: examining the impact pathways of the HEEACT accreditation system on teaching quality
20
+ - Designing the research framework: applying BSC (Balanced Scorecard) to university self-assessment
21
+
22
+ ### 2. Data Curation
23
+
24
+ **Definition**: Management activities to annotate (produce metadata), scrub data and maintain research data (including software code, where it is necessary for interpreting the data itself) for initial use and later re-use.
25
+
26
+ **Higher Education Research Context Examples**:
27
+ - Organizing MOE (Ministry of Education) public statistics and building a cross-year comparative database
28
+ - Cleaning UCAN competency diagnostic raw data, handling missing values and outliers
29
+ - Building an institutional metadata mapping table (including name changes and merger records)
30
+
31
+ ### 3. Formal Analysis
32
+
33
+ **Definition**: Application of statistical, mathematical, computational, or other formal techniques to analyze or synthesize study data.
34
+
35
+ **Higher Education Research Context Examples**:
36
+ - Performing Structural Equation Modeling (SEM) to analyze the relationship between accreditation indicators and student learning outcomes
37
+ - Conducting Data Envelopment Analysis (DEA) to evaluate university operational efficiency
38
+ - Using text mining techniques to analyze self-assessment report texts
39
+
40
+ ### 4. Funding Acquisition
41
+
42
+ **Definition**: Acquisition of the financial support for the project leading to this publication.
43
+
44
+ **Higher Education Research Context Examples**:
45
+ - Applying for NSTC (National Science and Technology Council) research grants
46
+ - Obtaining MOE Higher Education Sprout Project funding
47
+ - Securing seed project funding from the institutional Office of Research and Development
48
+
49
+ ### 5. Investigation
50
+
51
+ **Definition**: Conducting a research and investigation process, specifically performing the experiments, or data/evidence collection.
52
+
53
+ **Higher Education Research Context Examples**:
54
+ - Conducting a survey: surveying faculty across all higher education institutions on the current state of teaching practice research
55
+ - Conducting in-depth interviews: interviewing quality assurance directors at 10 universities
56
+ - Collecting self-assessment reports and site visit records from various institutions
57
+
58
+ ### 6. Methodology
59
+
60
+ **Definition**: Development or design of methodology; creation of models.
61
+
62
+ **Higher Education Research Context Examples**:
63
+ - Designing a mixed-methods research framework (quantitative survey + qualitative interviews)
64
+ - Developing a higher education quality indicator assessment tool
65
+ - Constructing an indicator system for a university exit early-warning model
66
+
67
+ ### 7. Project Administration
68
+
69
+ **Definition**: Management and coordination responsibility for the research activity planning and execution.
70
+
71
+ **Higher Education Research Context Examples**:
72
+ - Coordinating the work progress of a cross-institutional research team
73
+ - Managing phased outputs of a multi-year NSTC grant
74
+ - Arranging accreditation site visit schedules and committee member assignments
75
+
76
+ ### 8. Resources
77
+
78
+ **Definition**: Provision of study materials, reagents, materials, patients, laboratory samples, animals, instrumentation, computing resources, or other analysis tools.
79
+
80
+ **Higher Education Research Context Examples**:
81
+ - Providing access to an Institutional Research (IR) database
82
+ - Providing authorization to use HEEACT accreditation data
83
+ - Providing high-performance computing resources for large-scale text analysis
84
+
85
+ ### 9. Software
86
+
87
+ **Definition**: Programming, software development; designing computer programs; implementation of the computer code and supporting algorithms; testing of existing code components.
88
+
89
+ **Higher Education Research Context Examples**:
90
+ - Developing an automated accreditation indicator calculation dashboard
91
+ - Writing Python/R statistical analysis code
92
+ - Building an NLP text analysis system
93
+
94
+ ### 10. Supervision
95
+
96
+ **Definition**: Oversight and leadership responsibility for the research activity planning and execution, including mentorship external to the core team.
97
+
98
+ **Higher Education Research Context Examples**:
99
+ - Supervising graduate students in conducting thesis research
100
+ - Serving as principal investigator and monitoring research quality
101
+ - Providing methodological guidance as a senior scholar
102
+
103
+ ### 11. Validation
104
+
105
+ **Definition**: Verification, whether as a part of the activity or separate, of the overall replication/reproducibility of results/experiments and other research outputs.
106
+
107
+ **Higher Education Research Context Examples**:
108
+ - Verifying the robustness of quantitative analysis results (sensitivity analysis)
109
+ - Using triangulation to confirm qualitative research findings
110
+ - Cross-checking the consistency of different data sources
111
+
112
+ ### 12. Visualization
113
+
114
+ **Definition**: Preparation, creation and/or presentation of the published work, specifically visualization/data presentation.
115
+
116
+ **Higher Education Research Context Examples**:
117
+ - Creating accreditation indicator trend charts and dashboards
118
+ - Designing research framework diagrams and conceptual model diagrams
119
+ - Creating charts and heatmaps for statistical analysis results
120
+
121
+ ### 13. Writing -- Original Draft
122
+
123
+ **Definition**: Preparation, creation and/or presentation of the published work, specifically writing the initial draft (including substantive translation).
124
+
125
+ **Higher Education Research Context Examples**:
126
+ - Writing the complete initial draft of the paper (including all chapters)
127
+ - Translating the Chinese initial draft into an English submission version
128
+ - Writing specific chapters (e.g., literature review or methodology)
129
+
130
+ ### 14. Writing -- Review & Editing
131
+
132
+ **Definition**: Preparation, creation and/or presentation of the published work by those from the original research group, specifically critical review, commentary or revision — including pre- or post-publication stages.
133
+
134
+ **Higher Education Research Context Examples**:
135
+ - Reviewing and revising co-authors' initial drafts
136
+ - Making revisions based on peer review comments
137
+ - Proofreading the final version for text and formatting
138
+
139
+ ---
140
+
141
+ ## ICMJE Authorship Criteria
142
+
143
+ The International Committee of Medical Journal Editors (ICMJE) authorship criteria are widely referenced across all academic disciplines. **All four conditions must be met** to be listed as an author:
144
+
145
+ | # | Condition | Description |
146
+ |---|------|------|
147
+ | 1 | Substantial contributions | Substantial contributions to the conception or design; or to the acquisition, analysis, or interpretation of data |
148
+ | 2 | Drafting or revising | Participation in drafting the manuscript or critically reviewing important intellectual content |
149
+ | 3 | Final approval | Approval of the final version for submission |
150
+ | 4 | Accountability | Agreement to be accountable for all aspects of the work, ensuring that questions related to the accuracy or integrity of any part are appropriately investigated and resolved |
151
+
152
+ ### Contributions That Do Not Qualify for Authorship
153
+
154
+ The following contributions typically **do not qualify** for authorship and should be listed in the Acknowledgments:
155
+
156
+ - Providing funding support only
157
+ - Providing administrative support or resources only
158
+ - Language editing or translation only
159
+ - Data entry or transcription only
160
+ - Serving as a department head only (without actual research involvement)
161
+
162
+ ---
163
+
164
+ ## Contribution Matrix Example
165
+
166
+ ### Author x Role Matrix
167
+
168
+ | Role | Author A (Corresponding Author) | Author B | Author C |
169
+ |------|:---:|:---:|:---:|
170
+ | Conceptualization | Lead | Supporting | -- |
171
+ | Data curation | -- | Lead | Supporting |
172
+ | Formal analysis | Supporting | Lead | -- |
173
+ | Funding acquisition | Lead | -- | -- |
174
+ | Investigation | Supporting | Lead | Lead |
175
+ | Methodology | Lead | Supporting | -- |
176
+ | Project administration | Lead | -- | -- |
177
+ | Resources | Lead | -- | -- |
178
+ | Software | -- | Lead | -- |
179
+ | Supervision | Lead | -- | -- |
180
+ | Validation | Supporting | Supporting | Lead |
181
+ | Visualization | -- | Lead | Supporting |
182
+ | Writing -- original draft | Lead | Supporting | -- |
183
+ | Writing -- review & editing | Lead | Supporting | Supporting |
184
+
185
+ **Label Descriptions**:
186
+ - **Lead**: Primarily responsible for this contribution
187
+ - **Supporting**: Assisting or auxiliary role
188
+ - **--**: Did not participate
189
+
190
+ ---
191
+
192
+ ## AI Not Listed as Author Policy
193
+
194
+ ### Major Publisher and Organization Positions
195
+
196
+ | Organization/Publisher | Policy Summary | Effective Date |
197
+ |------------|---------|---------|
198
+ | **ICMJE** | AI tools do not meet the four authorship criteria (cannot be accountable, cannot approve); must not be listed as authors | 2023 |
199
+ | **APA** (American Psychological Association) | AI not listed as author; AI use must be disclosed in methods or acknowledgments | 2023 |
200
+ | **Nature/Springer Nature** | LLMs not listed as authors; must disclose usage in methods or acknowledgments | 2023 |
201
+ | **Science/AAAS** | AI-generated text cannot be presented as original work; AI use must be disclosed | 2023 |
202
+ | **Elsevier** | AI tools not listed as authors; must disclose in the manuscript | 2023 |
203
+ | **Wiley** | AI not listed as author; must describe usage in acknowledgments | 2023 |
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+ | **Taylor & Francis** | AI not listed as author; must disclose AI use at submission | 2023 |
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+ | **IEEE** | AI must not be listed as author or co-author | 2023 |
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+
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+ ### AI Disclosure Best Practices
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+
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+ 1. **Clearly state in Methods or Acknowledgments** which AI tools were used and how they were used
210
+ 2. **Authors take full responsibility** for all AI-assisted output content
211
+ 3. **AI-produced text must not be directly presented as original research findings**
212
+ 4. **Recommended format for citing AI tools** (per APA 7th):
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+
214
+ ```
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+ OpenAI. (2024). ChatGPT (Version GPT-4) [Large language model]. https://chat.openai.com/
216
+ ```
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+
218
+ ---
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+
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+ ## CRediT Requirements Across Major Journals
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+
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+ | Journal/Publisher | CRediT Requirement | Format |
223
+ |------------|------------|------|
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+ | Most **Elsevier** journals | Mandatory | Select roles in submission system |
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+ | **PLOS ONE** | Mandatory | Stated in text within the manuscript |
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+ | Some **Springer Nature** journals | Encouraged | Stated in text within the manuscript |
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+ | Some **Wiley** journals | Encouraged | Text or table within the manuscript |
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+ | All **MDPI** journals | Mandatory | Dedicated section at end of manuscript |
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+ | Some **Taylor & Francis** journals | Encouraged | Stated in text within the manuscript |
230
+ | **TSSCI** Taiwan journals | Few require it | Per individual journal regulations |
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+
232
+ ---
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+
234
+ ## Boundary Between Acknowledgments and Authorship
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+
236
+ | List as Author | List in Acknowledgments |
237
+ |---------|---------|
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+ | Designed the research framework | Provided administrative support |
239
+ | Wrote or substantially revised the manuscript | Language editing/translation |
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+ | Performed data analysis | Data entry/transcription |
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+ | Obtained research funding AND participated in research | Provided funding only without research involvement |
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+ | Designed the research methodology | Provided laboratory/equipment |
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+ | Supervised research and provided academic guidance | Served as administrative head only |
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+
245
+ ### Acknowledgments Section Example
246
+
247
+ ```
248
+ The authors would like to thank [Name] from [Institution] for administrative
249
+ support, [Name] for language editing, and the anonymous reviewers for their
250
+ constructive feedback. This study was conducted with the support of the
251
+ Higher Education Evaluation and Accreditation Council of Taiwan (HEEACT).
252
+ ```
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+
254
+ ---
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+
256
+ ## CRediT Statement Templates
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+
258
+ ### English Version
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+
260
+ **Author Contributions Statement**:
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+
262
+ ```
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+ [Author A]: Conceptualization, Methodology, Funding acquisition,
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+ Writing – original draft, Supervision, Project administration.
265
+ [Author B]: Data curation, Formal analysis, Software, Visualization,
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+ Writing – original draft, Writing – review & editing.
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+ [Author C]: Investigation, Validation, Writing – review & editing.
268
+ ```
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+
270
+ ### Chinese Version
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+
272
+ **Author Contributions Statement**:
273
+
274
+ ```
275
+ [Author A]: Conceptualization, Methodology, Funding acquisition,
276
+ Writing – original draft, Supervision, Project administration.
277
+ [Author B]: Data curation, Formal analysis, Software, Visualization,
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+ Writing – original draft, Writing – review & editing.
279
+ [Author C]: Investigation, Validation, Writing – review & editing.
280
+ ```
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+
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+ ### Chinese-English Role Mapping
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+
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+ | English | Romanized Chinese |
285
+ |------|------|
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+ | Conceptualization | Gai Nian Hua |
287
+ | Data curation | Zi Liao Guan Li |
288
+ | Formal analysis | Zheng Shi Fen Xi |
289
+ | Funding acquisition | Jing Fei Qu De |
290
+ | Investigation | Diao Cha Yan Jiu |
291
+ | Methodology | Yan Jiu Fang Fa |
292
+ | Project administration | Ji Hua Guan Li |
293
+ | Resources | Zi Yuan Ti Gong |
294
+ | Software | Ruan Ti Kai Fa |
295
+ | Supervision | Zhi Dao Jian Du |
296
+ | Validation | Yan Zheng |
297
+ | Visualization | Shi Jue Hua |
298
+ | Writing -- original draft | Zhuan Xie Chu Gao |
299
+ | Writing -- review & editing | Shen Yue Xiu Ding |
300
+
301
+ ---
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+
303
+ ## Reference Resources
304
+
305
+ - CRediT official taxonomy: https://credit.niso.org/
306
+ - ICMJE authorship criteria: https://www.icmje.org/recommendations/browse/roles-and-responsibilities/defining-the-role-of-authors-and-contributors.html
307
+ - APA AI policy: https://www.apa.org/pubs/journals/resources/ai-policy
308
+ - Nature AI policy: https://www.nature.com/nature-portfolio/editorial-policies/ai