psyclaw 0.27.22 → 0.28.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +11 -5
- package/dist/apps/panel/index.html +2 -2
- package/dist/src/adapters/pi/extension.js +225 -92
- package/dist/src/adapters/pi/extension.js.map +1 -1
- package/dist/src/agents/import.js +44 -32
- package/dist/src/agents/import.js.map +1 -1
- package/dist/src/analysis/hooks.d.ts +1 -0
- package/dist/src/analysis/hooks.js +20 -1
- package/dist/src/analysis/hooks.js.map +1 -1
- package/dist/src/ars/bridge.d.ts +20 -0
- package/dist/src/ars/bridge.js +132 -0
- package/dist/src/ars/bridge.js.map +1 -0
- package/dist/src/ars/contracts.d.ts +55 -0
- package/dist/src/ars/contracts.js +2 -0
- package/dist/src/ars/contracts.js.map +1 -0
- package/dist/src/ars/panel-plan.d.ts +4 -0
- package/dist/src/ars/panel-plan.js +11 -0
- package/dist/src/ars/panel-plan.js.map +1 -0
- package/dist/src/ars/pi-panel-executor.d.ts +30 -0
- package/dist/src/ars/pi-panel-executor.js +140 -0
- package/dist/src/ars/pi-panel-executor.js.map +1 -0
- package/dist/src/ars/profile.d.ts +36 -0
- package/dist/src/ars/profile.js +119 -0
- package/dist/src/ars/profile.js.map +1 -0
- package/dist/src/ars/re-review.d.ts +22 -0
- package/dist/src/ars/re-review.js +172 -0
- package/dist/src/ars/re-review.js.map +1 -0
- package/dist/src/branding.d.ts +2 -4
- package/dist/src/branding.js +3 -5
- package/dist/src/branding.js.map +1 -1
- package/dist/src/bundled-tools.d.ts +3 -0
- package/dist/src/bundled-tools.js +21 -0
- package/dist/src/bundled-tools.js.map +1 -0
- package/dist/src/chat.js +6 -5
- package/dist/src/chat.js.map +1 -1
- package/dist/src/creation/contracts.d.ts +38 -0
- package/dist/src/creation/contracts.js +2 -0
- package/dist/src/creation/contracts.js.map +1 -0
- package/dist/src/creation/service.d.ts +7 -0
- package/dist/src/creation/service.js +196 -0
- package/dist/src/creation/service.js.map +1 -0
- package/dist/src/index.d.ts +10 -0
- package/dist/src/index.js +10 -0
- package/dist/src/index.js.map +1 -1
- package/dist/src/install/installer.js +32 -10
- package/dist/src/install/installer.js.map +1 -1
- package/dist/src/orchestration/personas.d.ts +15 -0
- package/dist/src/orchestration/personas.js +51 -0
- package/dist/src/orchestration/personas.js.map +1 -0
- package/dist/src/orchestration/pi-executor.d.ts +1 -0
- package/dist/src/orchestration/pi-executor.js +1 -1
- package/dist/src/orchestration/pi-executor.js.map +1 -1
- package/dist/src/panel/extension.js +29 -8
- package/dist/src/panel/extension.js.map +1 -1
- package/dist/src/panel/server.js +14 -5
- package/dist/src/panel/server.js.map +1 -1
- package/dist/src/project/paths.d.ts +3 -0
- package/dist/src/project/paths.js +7 -0
- package/dist/src/project/paths.js.map +1 -1
- package/dist/src/rules/user-rules.d.ts +8 -0
- package/dist/src/rules/user-rules.js +36 -0
- package/dist/src/rules/user-rules.js.map +1 -0
- package/dist/src/skills/contracts.d.ts +4 -4
- package/dist/src/skills/recommended.js +1 -1
- package/dist/src/skills/registry.js +49 -28
- package/dist/src/skills/registry.js.map +1 -1
- package/dist/src/style/cli-ui.js +0 -1
- package/dist/src/style/cli-ui.js.map +1 -1
- package/package.json +14 -3
- package/scripts/rebrand-pi.mjs +6 -0
- package/skills/recommended/catalog.json +2 -11
- package/vendor/ars/.claude/CLAUDE.md +371 -0
- package/vendor/ars/.command-invariants.toml +24 -0
- package/vendor/ars/CITATION.cff +35 -0
- package/vendor/ars/LICENSE +417 -0
- package/vendor/ars/MODE_REGISTRY.md +76 -0
- package/vendor/ars/NOTICE.md +26 -0
- package/vendor/ars/POSITIONING.md +99 -0
- package/vendor/ars/PSYCLAW_SOURCE.json +10 -0
- package/vendor/ars/README.md +751 -0
- package/vendor/ars/SECURITY.md +52 -0
- package/vendor/ars/THIRD_PARTY.md +70 -0
- package/vendor/ars/academic-paper/SKILL.md +542 -0
- package/vendor/ars/academic-paper/agents/abstract_bilingual_agent.md +171 -0
- package/vendor/ars/academic-paper/agents/argument_builder_agent.md +276 -0
- package/vendor/ars/academic-paper/agents/citation_compliance_agent.md +422 -0
- package/vendor/ars/academic-paper/agents/draft_writer_agent.md +656 -0
- package/vendor/ars/academic-paper/agents/formatter_agent.md +999 -0
- package/vendor/ars/academic-paper/agents/intake_agent.md +393 -0
- package/vendor/ars/academic-paper/agents/literature_strategist_agent.md +626 -0
- package/vendor/ars/academic-paper/agents/peer_reviewer_agent.md +516 -0
- package/vendor/ars/academic-paper/agents/revision_coach_agent.md +334 -0
- package/vendor/ars/academic-paper/agents/socratic_mentor_agent.md +527 -0
- package/vendor/ars/academic-paper/agents/structure_architect_agent.md +401 -0
- package/vendor/ars/academic-paper/agents/visualization_agent.md +441 -0
- package/vendor/ars/academic-paper/examples/chinese_paper_example.md +278 -0
- package/vendor/ars/academic-paper/examples/clinical_citation_verification_checklist.md +95 -0
- package/vendor/ars/academic-paper/examples/clinical_epistemic_status_example.md +100 -0
- package/vendor/ars/academic-paper/examples/commitment_ledger_example.md +147 -0
- package/vendor/ars/academic-paper/examples/imrad_hei_example.md +234 -0
- package/vendor/ars/academic-paper/examples/literature_review_example.md +260 -0
- package/vendor/ars/academic-paper/examples/plan_mode_guided_writing.md +600 -0
- package/vendor/ars/academic-paper/examples/revision_mode_example.md +344 -0
- package/vendor/ars/academic-paper/examples/revision_recovery_example.md +506 -0
- package/vendor/ars/academic-paper/examples/version_family_reconciliation_example.md +89 -0
- package/vendor/ars/academic-paper/references/abstract_writing_guide.md +169 -0
- package/vendor/ars/academic-paper/references/academic_writing_style.md +188 -0
- package/vendor/ars/academic-paper/references/anti_leakage_protocol.md +83 -0
- package/vendor/ars/academic-paper/references/apa7_chinese_citation_guide.md +364 -0
- package/vendor/ars/academic-paper/references/apa7_extended_guide.md +198 -0
- package/vendor/ars/academic-paper/references/changelog.md +11 -0
- package/vendor/ars/academic-paper/references/citation_format_switcher.md +228 -0
- package/vendor/ars/academic-paper/references/committee_correspondence_protocol.md +158 -0
- package/vendor/ars/academic-paper/references/credit_authorship_guide.md +308 -0
- package/vendor/ars/academic-paper/references/disclosure_mode_protocol.md +478 -0
- package/vendor/ars/academic-paper/references/domain_evidence_profiles.md +38 -0
- package/vendor/ars/academic-paper/references/failure_paths.md +349 -0
- package/vendor/ars/academic-paper/references/funding_statement_guide.md +319 -0
- package/vendor/ars/academic-paper/references/hei_domain_glossary.md +169 -0
- package/vendor/ars/academic-paper/references/intro_title_rhetoric_guide.md +114 -0
- package/vendor/ars/academic-paper/references/journal_submission_guide.md +249 -0
- package/vendor/ars/academic-paper/references/latex_template_reference.md +378 -0
- package/vendor/ars/academic-paper/references/mode_selection_guide.md +378 -0
- package/vendor/ars/academic-paper/references/paper_structure_patterns.md +330 -0
- package/vendor/ars/academic-paper/references/plan_mode_protocol.md +112 -0
- package/vendor/ars/academic-paper/references/policy_anchor_disclosure_protocol.md +200 -0
- package/vendor/ars/academic-paper/references/policy_anchor_table.md +157 -0
- package/vendor/ars/academic-paper/references/revision_patch_protocol.md +173 -0
- package/vendor/ars/academic-paper/references/statistical_visualization_standards.md +750 -0
- package/vendor/ars/academic-paper/references/venue_disclosure_policies.md +259 -0
- package/vendor/ars/academic-paper/references/vlm_figure_verification.md +126 -0
- package/vendor/ars/academic-paper/references/workflow_phase_details.md +135 -0
- package/vendor/ars/academic-paper/references/writing_judgment_framework.md +59 -0
- package/vendor/ars/academic-paper/references/writing_quality_check.md +173 -0
- package/vendor/ars/academic-paper/templates/bilingual_abstract_template.md +78 -0
- package/vendor/ars/academic-paper/templates/case_study_template.md +129 -0
- package/vendor/ars/academic-paper/templates/conference_paper_template.md +108 -0
- package/vendor/ars/academic-paper/templates/credit_statement_template.md +132 -0
- package/vendor/ars/academic-paper/templates/funding_statement_template.md +290 -0
- package/vendor/ars/academic-paper/templates/imrad_template.md +183 -0
- package/vendor/ars/academic-paper/templates/latex_article_template.tex +199 -0
- package/vendor/ars/academic-paper/templates/literature_review_template.md +135 -0
- package/vendor/ars/academic-paper/templates/policy_brief_template.md +139 -0
- package/vendor/ars/academic-paper/templates/revision_tracking_template.md +199 -0
- package/vendor/ars/academic-paper/templates/theoretical_paper_template.md +119 -0
- package/vendor/ars/academic-paper-reviewer/SKILL.md +491 -0
- package/vendor/ars/academic-paper-reviewer/agents/devils_advocate_reviewer_agent.md +443 -0
- package/vendor/ars/academic-paper-reviewer/agents/domain_reviewer_agent.md +412 -0
- package/vendor/ars/academic-paper-reviewer/agents/editorial_synthesizer_agent.md +478 -0
- package/vendor/ars/academic-paper-reviewer/agents/eic_agent.md +339 -0
- package/vendor/ars/academic-paper-reviewer/agents/field_analyst_agent.md +221 -0
- package/vendor/ars/academic-paper-reviewer/agents/methodology_reviewer_agent.md +449 -0
- package/vendor/ars/academic-paper-reviewer/agents/perspective_reviewer_agent.md +427 -0
- package/vendor/ars/academic-paper-reviewer/examples/hei_paper_review_example.md +391 -0
- package/vendor/ars/academic-paper-reviewer/examples/interdisciplinary_review_example.md +299 -0
- package/vendor/ars/academic-paper-reviewer/examples/subclaim_decomposition_example.md +80 -0
- package/vendor/ars/academic-paper-reviewer/references/calibration_mode_protocol.md +256 -0
- package/vendor/ars/academic-paper-reviewer/references/changelog.md +10 -0
- package/vendor/ars/academic-paper-reviewer/references/editorial_decision_standards.md +236 -0
- package/vendor/ars/academic-paper-reviewer/references/guided_mode_protocol.md +34 -0
- package/vendor/ars/academic-paper-reviewer/references/integration_guide.md +15 -0
- package/vendor/ars/academic-paper-reviewer/references/quality_rubrics.md +84 -0
- package/vendor/ars/academic-paper-reviewer/references/re_review_mode_protocol.md +340 -0
- package/vendor/ars/academic-paper-reviewer/references/review_criteria_framework.md +98 -0
- package/vendor/ars/academic-paper-reviewer/references/review_panel_provenance_protocol.md +197 -0
- package/vendor/ars/academic-paper-reviewer/references/review_quality_thinking.md +58 -0
- package/vendor/ars/academic-paper-reviewer/references/reviewer_sprint_prompt_source.md +324 -0
- package/vendor/ars/academic-paper-reviewer/references/sprint_contract_protocol.md +296 -0
- package/vendor/ars/academic-paper-reviewer/references/statistical_reporting_standards.md +505 -0
- package/vendor/ars/academic-paper-reviewer/references/top_journals_by_field.md +206 -0
- package/vendor/ars/academic-paper-reviewer/templates/editorial_decision_template.md +235 -0
- package/vendor/ars/academic-paper-reviewer/templates/peer_review_report_template.md +305 -0
- package/vendor/ars/academic-paper-reviewer/templates/revision_response_template.md +248 -0
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- package/vendor/ars/academic-pipeline/agents/claim_ref_alignment_audit_agent.md +382 -0
- package/vendor/ars/academic-pipeline/agents/collaboration_depth_agent.md +164 -0
- package/vendor/ars/academic-pipeline/agents/integrity_verification_agent.md +870 -0
- package/vendor/ars/academic-pipeline/agents/pipeline_orchestrator_agent.md +1379 -0
- package/vendor/ars/academic-pipeline/agents/state_tracker_agent.md +622 -0
- package/vendor/ars/academic-pipeline/examples/full_pipeline_example.md +482 -0
- package/vendor/ars/academic-pipeline/examples/integrity_failure_recovery.md +389 -0
- package/vendor/ars/academic-pipeline/examples/mid_entry_example.md +414 -0
- package/vendor/ars/academic-pipeline/references/adapters/.gitkeep +0 -0
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- package/vendor/ars/academic-pipeline/references/ai_research_failure_modes.md +185 -0
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- package/vendor/ars/academic-pipeline/references/claim_audit_calibration_protocol.md +175 -0
- package/vendor/ars/academic-pipeline/references/claim_verification_protocol.md +282 -0
- package/vendor/ars/academic-pipeline/references/external_review_protocol.md +131 -0
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- package/vendor/ars/academic-pipeline/references/passport_as_reset_boundary.md +132 -0
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- package/vendor/ars/academic-pipeline/references/progress_dashboard_template.md +38 -0
- package/vendor/ars/academic-pipeline/references/reinforcement_content.md +15 -0
- package/vendor/ars/academic-pipeline/references/reproducibility_audit.md +55 -0
- package/vendor/ars/academic-pipeline/references/score_trajectory_protocol.md +78 -0
- package/vendor/ars/academic-pipeline/references/team_collaboration_protocol.md +261 -0
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- package/vendor/ars/agents/report_compiler_agent.md +341 -0
- package/vendor/ars/agents/research_architect_agent.md +298 -0
- package/vendor/ars/agents/synthesis_agent.md +356 -0
- package/vendor/ars/commands/ars-3w.md +10 -0
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- package/vendor/ars/scripts/uncited_assertion_detector.py +254 -0
- package/vendor/ars/scripts/v3_6_7_inversion_manifest.json +9 -0
- package/vendor/ars/scripts/v3_6_8_inversion_manifest.json +10 -0
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- package/vendor/ars/shared/collaboration_depth_rubric.md +154 -0
- package/vendor/ars/shared/compliance_checkpoint_protocol.md +162 -0
- package/vendor/ars/shared/compliance_report.schema.json +187 -0
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- package/vendor/ars/shared/contracts/human_subjects/review_pathway_trace_request.schema.json +127 -0
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- package/vendor/ars/shared/contracts/human_subjects/submission_packet_manifest.schema.json +999 -0
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- package/vendor/ars/shared/contracts/passport/claim_drift.schema.json +58 -0
- package/vendor/ars/shared/contracts/passport/claim_intent_manifest.schema.json +107 -0
- package/vendor/ars/shared/contracts/passport/constraint_violation.schema.json +65 -0
- package/vendor/ars/shared/contracts/passport/experiment_alignment_result.schema.json +69 -0
- package/vendor/ars/shared/contracts/passport/experiment_provenance_entry.schema.json +169 -0
- package/vendor/ars/shared/contracts/passport/human_read_log.schema.json +86 -0
- package/vendor/ars/shared/contracts/passport/inquiry_ledger_ref.schema.json +22 -0
- package/vendor/ars/shared/contracts/passport/literature_corpus_entry.schema.json +650 -0
- package/vendor/ars/shared/contracts/passport/preregistration_artifact.schema.json +132 -0
- package/vendor/ars/shared/contracts/passport/rejection_log.schema.json +89 -0
- package/vendor/ars/shared/contracts/passport/reset_ledger_entry.schema.json +158 -0
- package/vendor/ars/shared/contracts/passport/temporal_audit_results.schema.json +208 -0
- package/vendor/ars/shared/contracts/passport/terminal_policies.schema.json +50 -0
- package/vendor/ars/shared/contracts/passport/timeline.schema.json +102 -0
- package/vendor/ars/shared/contracts/passport/uncited_assertion.schema.json +56 -0
- package/vendor/ars/shared/contracts/passport/uncited_audit_failure.schema.json +72 -0
- package/vendor/ars/shared/contracts/passport/user_attested_read_resolution.schema.json +87 -0
- package/vendor/ars/shared/contracts/passport/version_records.schema.json +138 -0
- package/vendor/ars/shared/contracts/patch/block_manifest.schema.json +45 -0
- package/vendor/ars/shared/contracts/patch/legacy/v1_0/revision_patch.schema.json +110 -0
- package/vendor/ars/shared/contracts/patch/revision_patch.schema.json +250 -0
- package/vendor/ars/shared/contracts/pdf/pdf_content_classifier_diagnostic.schema.json +39 -0
- package/vendor/ars/shared/contracts/pdf/pdf_content_classifier_worker.schema.json +88 -0
- package/vendor/ars/shared/contracts/pdf/pdf_read_preflight.schema.json +227 -0
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- package/vendor/ars/shared/contracts/re_review/legacy/v1_0/traceability.schema.json +841 -0
- package/vendor/ars/shared/contracts/re_review/legacy/v1_0/verdict_record.schema.json +244 -0
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- package/vendor/ars/shared/contracts/re_review/verdict_record.schema.json +245 -0
- package/vendor/ars/shared/contracts/research_workflow/inquiry_branch_ledger.schema.json +449 -0
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- package/vendor/ars/shared/contracts/review_target/criteria_registry.schema.json +97 -0
- package/vendor/ars/shared/contracts/review_target/review_criteria_binding_manifest.schema.json +235 -0
- package/vendor/ars/shared/contracts/review_target/review_criteria_source_receipt.schema.json +158 -0
- package/vendor/ars/shared/contracts/review_target/review_target_context.schema.json +106 -0
- package/vendor/ars/shared/contracts/review_target/review_target_declaration.schema.json +118 -0
- package/vendor/ars/shared/contracts/reviewer/full.json +114 -0
- package/vendor/ars/shared/contracts/reviewer/methodology_focus.json +75 -0
- package/vendor/ars/shared/contracts/reviewer/review_panel_provenance.schema.json +263 -0
- package/vendor/ars/shared/contracts/reviewer/review_panel_provenance_carrier.schema.json +122 -0
- package/vendor/ars/shared/contracts/reviewer/review_panel_provenance_input.schema.json +120 -0
- package/vendor/ars/shared/contracts/revision/author_adjudication.schema.json +251 -0
- package/vendor/ars/shared/contracts/revision/author_adjudication_input.schema.json +25 -0
- package/vendor/ars/shared/contracts/revision/claim_strength_drift_disposition.schema.json +97 -0
- package/vendor/ars/shared/contracts/revision/claim_strength_drift_disposition_input.schema.json +80 -0
- package/vendor/ars/shared/contracts/revision/claim_strength_drift_findings.schema.json +139 -0
- package/vendor/ars/shared/contracts/revision/claim_surface_manifest.schema.json +99 -0
- package/vendor/ars/shared/contracts/revision/integrity_correction_authorization.schema.json +140 -0
- package/vendor/ars/shared/contracts/revision/integrity_correction_authorization_input.schema.json +28 -0
- package/vendor/ars/shared/contracts/revision/integrity_correction_list.schema.json +48 -0
- package/vendor/ars/shared/contracts/revision/integrity_pass_receipt.schema.json +16 -0
- package/vendor/ars/shared/contracts/revision/revision_evidence_bundle.schema.json +134 -0
- package/vendor/ars/shared/contracts/revision/revision_roadmap.schema.json +334 -0
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- package/vendor/ars/shared/contracts/submission/submission_verification_report.schema.json +233 -0
- package/vendor/ars/shared/contracts/submission/venue_profile.schema.json +114 -0
- package/vendor/ars/shared/contracts/writer/full.json +87 -0
- package/vendor/ars/shared/cross_model_verification.md +714 -0
- package/vendor/ars/shared/evals_lift_report.schema.json +141 -0
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- package/vendor/ars/shared/handoff_schemas.md +1209 -0
- package/vendor/ars/shared/human_subjects_authority_registry.json +1278 -0
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"""Tests for the #610 step-5 deterministic arithmetic-receipt calculator.
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Three families: (1) distribution-tail accuracy pinned against published
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critical values and cross-family identities; (2) verdict logic pinned
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against the parent spec's §5 worked cases plus every sentinel ->
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``not_computable`` mapping; (3) grammar compatibility — every emitted
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machine line must parse under the #644 receipt gate's own field regexes,
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because the injected-receipt identity gate makes these exact bytes the
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card's receipt section.
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"""
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from scripts import recompute_receipts as rr
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def build(body: str) -> str:
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def one_request(procedure: str, fields: dict[str, str]) -> str:
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f"procedure_id: {procedure}",
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]
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lines += [f"{key}: {value}" for key, value in fields.items()]
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return build("\n".join(lines) + "\n")
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P_FIELDS = {
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"statistic_value": "1.31",
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"df": "140",
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"reported_p_comparator": "equals",
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"reported_p_value": ".008",
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}
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GRIM_FIELDS = {
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"n": "87",
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GRIMMER_FIELDS = {
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"n": "10",
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"scale_max": "5",
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N_FROM_DF_FIELDS = {
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def receipt_lines(procedure: str, fields: dict[str, str]) -> dict[str, str]:
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rr.parse_extraction(one_request(procedure, fields))
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# --- distribution accuracy ------------------------------------------------
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def test_t_two_tailed_critical_value():
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def test_spec_worked_t_values():
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def test_z_two_tailed_critical_value():
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def test_chi_square_critical_value():
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def test_f_critical_value():
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def test_f_of_squared_t_matches_two_tailed_t():
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for t_value, df in ((1.31, 140), (2.5, 7), (0.4, 33)):
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assert rr.f_tail_upper(t_value * t_value, 1, df) == pytest.approx(
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rr.t_tail_two(t_value, df), abs=1e-10
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)
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def test_chi_square_of_squared_z_matches_two_tailed_z():
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for z_value in (0.5, 1.96, 3.2):
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assert rr.chi2_tail_upper(z_value * z_value, 1) == pytest.approx(
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|
113
|
+
rr.z_tail_two(z_value), abs=1e-10
|
|
114
|
+
)
|
|
115
|
+
|
|
116
|
+
|
|
117
|
+
# --- p_from_test_statistic verdicts --------------------------------------
|
|
118
|
+
|
|
119
|
+
def test_spec_p_case_is_mismatch_with_both_tails_shown():
|
|
120
|
+
fields = receipt_lines("p_from_test_statistic", P_FIELDS)
|
|
121
|
+
assert fields["status"] == "mismatch"
|
|
122
|
+
assert fields["tail_convention"] == "unstated"
|
|
123
|
+
derived = fields["derived_value_or_range"]
|
|
124
|
+
assert "0.192 (two-tailed)" in derived
|
|
125
|
+
assert "0.0962 (one-tailed)" in derived
|
|
126
|
+
assert ";" in derived
|
|
127
|
+
|
|
128
|
+
|
|
129
|
+
def test_p_consistent_under_stated_tail():
|
|
130
|
+
fields = receipt_lines("p_from_test_statistic", {
|
|
131
|
+
**P_FIELDS, "tail_convention": "two-tailed",
|
|
132
|
+
"reported_p_value": ".192",
|
|
133
|
+
})
|
|
134
|
+
assert fields["status"] == "consistent"
|
|
135
|
+
|
|
136
|
+
|
|
137
|
+
def test_p_tail_ambiguous_when_only_one_tail_fits():
|
|
138
|
+
# One-tailed 0.0962 rounds to .10; two-tailed 0.192 does not.
|
|
139
|
+
fields = receipt_lines("p_from_test_statistic", {
|
|
140
|
+
**P_FIELDS, "reported_p_value": ".10",
|
|
141
|
+
})
|
|
142
|
+
assert fields["status"] == "not_computable"
|
|
143
|
+
assert fields["not_computable_reason"] == "tail_ambiguous"
|
|
144
|
+
|
|
145
|
+
|
|
146
|
+
def test_p_inequality_mismatch_when_both_tails_fail():
|
|
147
|
+
fields = receipt_lines("p_from_test_statistic", {
|
|
148
|
+
**P_FIELDS, "reported_p_comparator": "less_than",
|
|
149
|
+
"reported_p_value": ".05",
|
|
150
|
+
})
|
|
151
|
+
assert fields["status"] == "mismatch"
|
|
152
|
+
|
|
153
|
+
|
|
154
|
+
def test_p_inequality_consistent_when_both_tails_pass():
|
|
155
|
+
fields = receipt_lines("p_from_test_statistic", {
|
|
156
|
+
**P_FIELDS, "statistic_value": "3.5",
|
|
157
|
+
"reported_p_comparator": "less_than", "reported_p_value": ".05",
|
|
158
|
+
})
|
|
159
|
+
assert fields["status"] == "consistent"
|
|
160
|
+
|
|
161
|
+
|
|
162
|
+
def test_p_inequality_threshold_graze_is_unresolvable():
|
|
163
|
+
# z = 1.9599639845... has a two-tailed p of exactly .05 to well inside
|
|
164
|
+
# the 1e-9 guard.
|
|
165
|
+
fields = receipt_lines("p_from_test_statistic", {
|
|
166
|
+
"test_family": "z", "statistic_value": "1.9599639845400545",
|
|
167
|
+
"df": "none", "reported_p_comparator": "less_than",
|
|
168
|
+
"reported_p_value": ".05", "tail_convention": "unstated",
|
|
169
|
+
})
|
|
170
|
+
assert fields["status"] == "not_computable"
|
|
171
|
+
assert fields["not_computable_reason"] == "inequality_unresolvable"
|
|
172
|
+
|
|
173
|
+
|
|
174
|
+
def test_p_rounding_boundary_graze_is_ambiguous():
|
|
175
|
+
# The same z against `p = .1` at one decimal: the rounding interval is
|
|
176
|
+
# [.05, .15) and the derived two-tailed value sits on its lower endpoint.
|
|
177
|
+
fields = receipt_lines("p_from_test_statistic", {
|
|
178
|
+
"test_family": "z", "statistic_value": "1.9599639845400545",
|
|
179
|
+
"df": "none", "reported_p_comparator": "equals",
|
|
180
|
+
"reported_p_value": ".1", "tail_convention": "unstated",
|
|
181
|
+
})
|
|
182
|
+
assert fields["status"] == "not_computable"
|
|
183
|
+
assert fields["not_computable_reason"] == "rounding_boundary_ambiguous"
|
|
184
|
+
|
|
185
|
+
|
|
186
|
+
def test_f_receipt_normalizes_tail_to_family_rule():
|
|
187
|
+
fields = receipt_lines("p_from_test_statistic", {
|
|
188
|
+
"test_family": "F", "statistic_value": "3.316", "df": "2,30",
|
|
189
|
+
"reported_p_comparator": "equals", "reported_p_value": ".05",
|
|
190
|
+
"tail_convention": "unstated",
|
|
191
|
+
})
|
|
192
|
+
assert fields["status"] == "consistent"
|
|
193
|
+
assert fields["tail_convention"] == "upper-tail"
|
|
194
|
+
assert "two-tailed" not in fields["derived_value_or_range"]
|
|
195
|
+
|
|
196
|
+
|
|
197
|
+
def test_f_with_paper_stated_two_tail_is_nonstandard():
|
|
198
|
+
fields = receipt_lines("p_from_test_statistic", {
|
|
199
|
+
"test_family": "F", "statistic_value": "3.316", "df": "2,30",
|
|
200
|
+
"reported_p_comparator": "equals", "reported_p_value": ".05",
|
|
201
|
+
"tail_convention": "two-tailed",
|
|
202
|
+
})
|
|
203
|
+
assert fields["not_computable_reason"] == "nonstandard_p_procedure"
|
|
204
|
+
|
|
205
|
+
|
|
206
|
+
def test_p_sentinel_mappings():
|
|
207
|
+
cases = (
|
|
208
|
+
({"test_family": "unavailable"}, "test_family_ambiguous"),
|
|
209
|
+
({"statistic_value": "unavailable"}, "missing_reported_value"),
|
|
210
|
+
({"df": "unavailable"}, "missing_reported_value"),
|
|
211
|
+
# A family-inconsistent df shape (a t with an F pair) is refused at
|
|
212
|
+
# the gate as a retryable transcription slip, not mapped here.
|
|
213
|
+
)
|
|
214
|
+
for override, reason in cases:
|
|
215
|
+
fields = receipt_lines(
|
|
216
|
+
"p_from_test_statistic", {**P_FIELDS, **override}
|
|
217
|
+
)
|
|
218
|
+
assert fields["status"] == "not_computable"
|
|
219
|
+
assert fields["not_computable_reason"] == reason
|
|
220
|
+
# tail_convention is required on every p receipt, verdict or not.
|
|
221
|
+
assert "tail_convention" in fields
|
|
222
|
+
|
|
223
|
+
|
|
224
|
+
# --- grim verdicts --------------------------------------------------------
|
|
225
|
+
|
|
226
|
+
def test_spec_grim_case_is_mismatch_with_neighbors():
|
|
227
|
+
fields = receipt_lines("grim", GRIM_FIELDS)
|
|
228
|
+
assert fields["status"] == "mismatch"
|
|
229
|
+
assert "334/87 = 3.8391" in fields["nearest_achievable"]
|
|
230
|
+
assert "335/87 = 3.8506" in fields["nearest_achievable"]
|
|
231
|
+
assert fields["rounding_interval"].startswith(
|
|
232
|
+
"3.8465 <= mean <= 3.8475")
|
|
233
|
+
|
|
234
|
+
|
|
235
|
+
def test_grim_consistent_mean():
|
|
236
|
+
fields = receipt_lines("grim", {**GRIM_FIELDS, "reported_mean": "3.851"})
|
|
237
|
+
assert fields["status"] == "consistent"
|
|
238
|
+
assert "335" in fields["derived_value_or_range"]
|
|
239
|
+
|
|
240
|
+
|
|
241
|
+
def test_grim_rounding_rule_disagreement_is_ambiguous():
|
|
242
|
+
# 5/4 = 1.25 is the only candidate sum for a reported 1.3: half-up
|
|
243
|
+
# reaches it, ties-to-even does not, and 1.3 itself is unattainable.
|
|
244
|
+
fields = receipt_lines("grim", {
|
|
245
|
+
"n": "4", "reported_mean": "1.3", "scale_min": "1",
|
|
246
|
+
"scale_max": "5", "rounding_rule": "unstated",
|
|
247
|
+
})
|
|
248
|
+
assert fields["status"] == "not_computable"
|
|
249
|
+
assert fields["not_computable_reason"] == "rounding_rule_ambiguous"
|
|
250
|
+
|
|
251
|
+
|
|
252
|
+
def test_grim_stated_rule_resolves_the_tie():
|
|
253
|
+
consistent = receipt_lines("grim", {
|
|
254
|
+
"n": "4", "reported_mean": "1.3", "scale_min": "1",
|
|
255
|
+
"scale_max": "5", "rounding_rule": "half-up",
|
|
256
|
+
})
|
|
257
|
+
mismatch = receipt_lines("grim", {
|
|
258
|
+
"n": "4", "reported_mean": "1.3", "scale_min": "1",
|
|
259
|
+
"scale_max": "5", "rounding_rule": "half-even",
|
|
260
|
+
})
|
|
261
|
+
assert consistent["status"] == "consistent"
|
|
262
|
+
assert mismatch["status"] == "mismatch"
|
|
263
|
+
|
|
264
|
+
|
|
265
|
+
def test_grim_sentinel_mappings():
|
|
266
|
+
for override, reason in (
|
|
267
|
+
({"n": "unavailable"}, "analytic_n_ambiguous"),
|
|
268
|
+
({"scale_min": "unavailable"}, "scale_support_unknown"),
|
|
269
|
+
({"scale_max": "unavailable"}, "scale_support_unknown"),
|
|
270
|
+
):
|
|
271
|
+
fields = receipt_lines("grim", {**GRIM_FIELDS, **override})
|
|
272
|
+
assert fields["status"] == "not_computable"
|
|
273
|
+
assert fields["not_computable_reason"] == reason
|
|
274
|
+
# Conditional verdict fields are absent under not_computable.
|
|
275
|
+
assert "rounding_interval" not in fields
|
|
276
|
+
assert "nearest_achievable" not in fields
|
|
277
|
+
|
|
278
|
+
|
|
279
|
+
# --- grimmer verdicts -----------------------------------------------------
|
|
280
|
+
|
|
281
|
+
def test_spec_grimmer_case_is_mismatch():
|
|
282
|
+
fields = receipt_lines("grimmer", GRIMMER_FIELDS)
|
|
283
|
+
assert fields["status"] == "mismatch"
|
|
284
|
+
assert "SD = 0.0000" in fields["nearest_achievable"]
|
|
285
|
+
assert "SD = 0.4714" in fields["nearest_achievable"]
|
|
286
|
+
|
|
287
|
+
|
|
288
|
+
def test_grimmer_consistent_sd():
|
|
289
|
+
fields = receipt_lines(
|
|
290
|
+
"grimmer", {**GRIMMER_FIELDS, "reported_sd": "0.47"}
|
|
291
|
+
)
|
|
292
|
+
assert fields["status"] == "consistent"
|
|
293
|
+
|
|
294
|
+
|
|
295
|
+
def test_grimmer_convention_disagreement_is_ambiguous():
|
|
296
|
+
# Sample SD sqrt(2/9)=0.4714 rounds to 0.47; no attainable population
|
|
297
|
+
# SD does.
|
|
298
|
+
fields = receipt_lines("grimmer", {
|
|
299
|
+
**GRIMMER_FIELDS, "reported_sd": "0.47",
|
|
300
|
+
"sd_convention": "unstated",
|
|
301
|
+
})
|
|
302
|
+
assert fields["status"] == "not_computable"
|
|
303
|
+
assert fields["not_computable_reason"] == "sd_convention_unknown"
|
|
304
|
+
|
|
305
|
+
|
|
306
|
+
def test_grimmer_grim_inconsistent_mean_stops_first():
|
|
307
|
+
fields = receipt_lines("grimmer", {
|
|
308
|
+
**GRIMMER_FIELDS, "n": "87", "reported_mean": "3.847",
|
|
309
|
+
})
|
|
310
|
+
assert fields["status"] == "not_computable"
|
|
311
|
+
assert fields["not_computable_reason"] == "mean_grim_inconsistent"
|
|
312
|
+
|
|
313
|
+
|
|
314
|
+
def test_grimmer_budget_exhaustion_is_honest(monkeypatch):
|
|
315
|
+
monkeypatch.setattr(rr, "_STATE_BUDGET", 3)
|
|
316
|
+
fields = receipt_lines("grimmer", {
|
|
317
|
+
**GRIMMER_FIELDS, "n": "40", "reported_mean": "3.00",
|
|
318
|
+
"reported_sd": "0.50",
|
|
319
|
+
})
|
|
320
|
+
assert fields["status"] == "not_computable"
|
|
321
|
+
assert fields["not_computable_reason"] == "reachability_not_completed"
|
|
322
|
+
|
|
323
|
+
|
|
324
|
+
def test_attainable_sumsq_matches_brute_force():
|
|
325
|
+
from itertools import combinations_with_replacement
|
|
326
|
+
n, lo, hi, total = 5, 1, 4, 12
|
|
327
|
+
expected = {
|
|
328
|
+
sum(v * v for v in combo)
|
|
329
|
+
for combo in combinations_with_replacement(range(lo, hi + 1), n)
|
|
330
|
+
if sum(combo) == total
|
|
331
|
+
}
|
|
332
|
+
assert set(rr._attainable_sumsq(n, lo, hi, total)) == expected
|
|
333
|
+
|
|
334
|
+
|
|
335
|
+
# --- n_from_df verdicts ---------------------------------------------------
|
|
336
|
+
|
|
337
|
+
def test_spec_n_from_df_case_is_mismatch_with_ceiling_argument():
|
|
338
|
+
fields = receipt_lines("n_from_df", N_FROM_DF_FIELDS)
|
|
339
|
+
assert fields["status"] == "mismatch"
|
|
340
|
+
assert fields["derived_value_or_range"] == "implied N = 158"
|
|
341
|
+
assert fields["df_identity"] == "df=N1+N2-2"
|
|
342
|
+
assert "Welch-Satterthwaite" in fields["derivation"]
|
|
343
|
+
|
|
344
|
+
|
|
345
|
+
def test_n_from_df_consistent_equals():
|
|
346
|
+
fields = receipt_lines("n_from_df", {
|
|
347
|
+
"df_reported": "39", "df_identity_candidate": "df=N-1",
|
|
348
|
+
"stated_n": "40", "stated_n_relation": "equals",
|
|
349
|
+
})
|
|
350
|
+
assert fields["status"] == "consistent"
|
|
351
|
+
assert fields["df_identity"] == "df=N-1"
|
|
352
|
+
|
|
353
|
+
|
|
354
|
+
def test_n_from_df_sentinel_mappings():
|
|
355
|
+
for override, reason in (
|
|
356
|
+
({"df_identity_candidate": "other_or_corrected"},
|
|
357
|
+
"model_correction_or_pooling"),
|
|
358
|
+
({"df_identity_candidate": "unavailable"}, "df_identity_ambiguous"),
|
|
359
|
+
({"stated_n": "unavailable"}, "missing_reported_value"),
|
|
360
|
+
({"stated_n_relation": "unavailable"}, "missing_reported_value"),
|
|
361
|
+
):
|
|
362
|
+
fields = receipt_lines("n_from_df", {**N_FROM_DF_FIELDS, **override})
|
|
363
|
+
assert fields["status"] == "not_computable"
|
|
364
|
+
assert fields["not_computable_reason"] == reason
|
|
365
|
+
assert "df_identity" not in fields
|
|
366
|
+
|
|
367
|
+
|
|
368
|
+
# --- extraction parsing ---------------------------------------------------
|
|
369
|
+
|
|
370
|
+
def test_attestation_passes_through_verbatim():
|
|
371
|
+
text = rr.compute_receipts(rr.parse_extraction(build(
|
|
372
|
+
"no_recomputable_statistics: the manuscript reports no test "
|
|
373
|
+
"statistics, means with N, or dfs\n"
|
|
374
|
+
)))
|
|
375
|
+
assert text == (
|
|
376
|
+
"## Arithmetic Receipts\n\n"
|
|
377
|
+
"no_recomputable_statistics: the manuscript reports no test "
|
|
378
|
+
"statistics, means with N, or dfs\n"
|
|
379
|
+
)
|
|
380
|
+
|
|
381
|
+
|
|
382
|
+
def test_decorated_and_fenced_machine_lines_parse():
|
|
383
|
+
body = one_request("n_from_df", N_FROM_DF_FIELDS).replace(
|
|
384
|
+
"procedure_id: n_from_df", "- **procedure_id**: n_from_df"
|
|
385
|
+
).replace(
|
|
386
|
+
"df_reported: 156", "```\ndf_reported: 156\n```"
|
|
387
|
+
)
|
|
388
|
+
extraction = rr.parse_extraction(body)
|
|
389
|
+
assert extraction.requests[0]["procedure_id"] == "n_from_df"
|
|
390
|
+
assert extraction.requests[0]["df_reported"] == "156"
|
|
391
|
+
|
|
392
|
+
|
|
393
|
+
@pytest.mark.parametrize("mutate,fragment", [
|
|
394
|
+
(lambda t: t.replace("### RR1", "### RR2"), "contiguous"),
|
|
395
|
+
(lambda t: t.replace("procedure_id: grim", "procedure_id: grimm"),
|
|
396
|
+
"procedure_id"),
|
|
397
|
+
(lambda t: t + "bogus_field: value\n", "unknown field"),
|
|
398
|
+
(lambda t: t + "reported_sd: 0.10\n", "do not belong"),
|
|
399
|
+
(lambda t: t + "n: 87\n", "duplicate field"),
|
|
400
|
+
(lambda t: t + "no_recomputable_statistics: nothing\n", "attestation"),
|
|
401
|
+
(lambda t: t.replace("n: 87\n", ""), "missing field n"),
|
|
402
|
+
(lambda t: t.replace("reported_mean: 3.847", "reported_mean: 3,847"),
|
|
403
|
+
"plain decimal"),
|
|
404
|
+
(lambda t: t + "This mean looks impossible to me.\n",
|
|
405
|
+
"not a machine line"),
|
|
406
|
+
(lambda t: t.replace("## Recompute Extraction", "## Something Else"),
|
|
407
|
+
"no ## Recompute Extraction"),
|
|
408
|
+
])
|
|
409
|
+
def test_extraction_rejections(mutate, fragment):
|
|
410
|
+
with pytest.raises(rr.ExtractionError, match=fragment):
|
|
411
|
+
rr.parse_extraction(mutate(one_request("grim", GRIM_FIELDS)))
|
|
412
|
+
|
|
413
|
+
|
|
414
|
+
def test_empty_section_is_rejected():
|
|
415
|
+
with pytest.raises(rr.ExtractionError, match="neither"):
|
|
416
|
+
rr.parse_extraction(build(""))
|
|
417
|
+
|
|
418
|
+
|
|
419
|
+
# --- grammar compatibility with the #644 receipt gate ---------------------
|
|
420
|
+
|
|
421
|
+
def full_worked_extraction() -> str:
|
|
422
|
+
parts = ["## Recompute Extraction", ""]
|
|
423
|
+
for index, (procedure, fields) in enumerate((
|
|
424
|
+
("p_from_test_statistic", P_FIELDS),
|
|
425
|
+
("grim", GRIM_FIELDS),
|
|
426
|
+
("grimmer", GRIMMER_FIELDS),
|
|
427
|
+
("n_from_df", N_FROM_DF_FIELDS),
|
|
428
|
+
("grim", {**GRIM_FIELDS, "n": "unavailable"}),
|
|
429
|
+
), start=1):
|
|
430
|
+
parts.append(f"### RR{index}")
|
|
431
|
+
parts.append(f"procedure_id: {procedure}")
|
|
432
|
+
parts.append(
|
|
433
|
+
"evidence_anchor: table: Table 1, reported statistics under test"
|
|
434
|
+
)
|
|
435
|
+
parts.append("reported_inputs: the manuscript values under test")
|
|
436
|
+
parts.append("assumptions: only what the paper licenses")
|
|
437
|
+
parts += [f"{key}: {value}" for key, value in fields.items()]
|
|
438
|
+
parts.append("")
|
|
439
|
+
return "\n".join(parts)
|
|
440
|
+
|
|
441
|
+
|
|
442
|
+
def test_every_emitted_line_parses_under_the_gate_grammar():
|
|
443
|
+
text = rr.compute_receipts(rr.parse_extraction(full_worked_extraction()))
|
|
444
|
+
assert text.startswith("## Arithmetic Receipts\n")
|
|
445
|
+
for line in text.splitlines()[1:]:
|
|
446
|
+
if not line:
|
|
447
|
+
continue
|
|
448
|
+
if line.startswith("### "):
|
|
449
|
+
assert phase._RECEIPT_H3_RE.fullmatch(line[4:]), line
|
|
450
|
+
continue
|
|
451
|
+
matched = [
|
|
452
|
+
key for key, pattern in phase._RECEIPT_FIELD_RES.items()
|
|
453
|
+
if pattern.fullmatch(line)
|
|
454
|
+
]
|
|
455
|
+
assert len(matched) == 1, line
|
|
456
|
+
# The calculator never links: finding_ref stays the seat's judgment.
|
|
457
|
+
assert "finding_ref:" not in text
|
|
458
|
+
|
|
459
|
+
|
|
460
|
+
def test_emitted_enums_are_gate_enums():
|
|
461
|
+
text = rr.compute_receipts(rr.parse_extraction(full_worked_extraction()))
|
|
462
|
+
for line in text.splitlines():
|
|
463
|
+
if line.startswith("status: "):
|
|
464
|
+
assert line[len("status: "):] in phase._RECEIPT_STATUSES
|
|
465
|
+
assert line[len("status: "):] != "not_applicable"
|
|
466
|
+
if line.startswith("not_computable_reason: "):
|
|
467
|
+
reason = line[len("not_computable_reason: "):]
|
|
468
|
+
assert reason in phase._NOT_COMPUTABLE_REASONS
|
|
469
|
+
if line.startswith("procedure_id: "):
|
|
470
|
+
assert line[len("procedure_id: "):] in phase._RECEIPT_PROCEDURES
|
|
471
|
+
|
|
472
|
+
|
|
473
|
+
def test_determinism_same_bytes_in_same_bytes_out():
|
|
474
|
+
text = full_worked_extraction()
|
|
475
|
+
first = rr.compute_receipts(rr.parse_extraction(text))
|
|
476
|
+
second = rr.compute_receipts(rr.parse_extraction(text))
|
|
477
|
+
assert first == second
|
|
478
|
+
|
|
479
|
+
|
|
480
|
+
# --- CLI ------------------------------------------------------------------
|
|
481
|
+
|
|
482
|
+
def test_cli_roundtrip(tmp_path):
|
|
483
|
+
extraction = tmp_path / "extraction.md"
|
|
484
|
+
output = tmp_path / "receipts.md"
|
|
485
|
+
extraction.write_text(one_request("grim", GRIM_FIELDS), encoding="utf-8")
|
|
486
|
+
assert rr.main([
|
|
487
|
+
"--extraction", str(extraction), "--output", str(output),
|
|
488
|
+
]) == 0
|
|
489
|
+
text = output.read_text(encoding="utf-8")
|
|
490
|
+
assert text.startswith("## Arithmetic Receipts\n")
|
|
491
|
+
assert "status: mismatch" in text
|
|
492
|
+
|
|
493
|
+
|
|
494
|
+
def test_cli_rejects_invalid_extraction(tmp_path, capsys):
|
|
495
|
+
extraction = tmp_path / "extraction.md"
|
|
496
|
+
output = tmp_path / "receipts.md"
|
|
497
|
+
extraction.write_text("no section here\n", encoding="utf-8")
|
|
498
|
+
assert rr.main([
|
|
499
|
+
"--extraction", str(extraction), "--output", str(output),
|
|
500
|
+
]) == 2
|
|
501
|
+
assert not output.exists()
|
|
502
|
+
assert "extraction rejected" in capsys.readouterr().err
|
|
503
|
+
|
|
504
|
+
|
|
505
|
+
# --- dual-track review round 1 hardening ----------------------------------
|
|
506
|
+
|
|
507
|
+
|
|
508
|
+
import math
|
|
509
|
+
|
|
510
|
+
|
|
511
|
+
def test_near_zero_t_keeps_complement_precision():
|
|
512
|
+
# codex P1-1: t=1e-8 at df=1 (Cauchy) has two-tailed p = 1 - 2e-8/pi;
|
|
513
|
+
# a naive 1-x beta argument collapses this to exactly 1.0.
|
|
514
|
+
p = rr.t_tail_two(1e-8, 1)
|
|
515
|
+
assert p < 1.0
|
|
516
|
+
assert (1.0 - p) == pytest.approx(2e-8 / math.pi, rel=1e-6)
|
|
517
|
+
|
|
518
|
+
|
|
519
|
+
def test_near_zero_f_keeps_complement_precision():
|
|
520
|
+
assert rr.f_tail_upper(1e-16, 1, 1) < 1.0
|
|
521
|
+
|
|
522
|
+
|
|
523
|
+
def test_truncation_interval_text_is_truncation_shaped():
|
|
524
|
+
# codex P1-2: sum 5 gives 5/4 = 1.25, which truncates to 1.2; the
|
|
525
|
+
# receipt interval must be [1.2, 1.3), not a half-up shape that
|
|
526
|
+
# excludes the achieving value.
|
|
527
|
+
fields = receipt_lines("grim", {
|
|
528
|
+
"n": "4", "reported_mean": "1.2", "scale_min": "1",
|
|
529
|
+
"scale_max": "5", "rounding_rule": "truncation",
|
|
530
|
+
})
|
|
531
|
+
assert fields["status"] == "consistent"
|
|
532
|
+
assert fields["rounding_interval"].startswith("1.20 <= mean < 1.30")
|
|
533
|
+
assert "truncation" in fields["rounding_interval"]
|
|
534
|
+
|
|
535
|
+
|
|
536
|
+
def test_half_even_interval_text_names_its_tie_rule():
|
|
537
|
+
fields = receipt_lines("grim", {
|
|
538
|
+
"n": "4", "reported_mean": "1.2", "scale_min": "1",
|
|
539
|
+
"scale_max": "5", "rounding_rule": "half-even",
|
|
540
|
+
})
|
|
541
|
+
assert "ties-to-even" in fields["rounding_interval"]
|
|
542
|
+
|
|
543
|
+
|
|
544
|
+
def test_negative_reported_sd_is_a_mismatch():
|
|
545
|
+
# codex P1-3: an SD is nonnegative by definition; clamping only the
|
|
546
|
+
# lower endpoint before squaring inverted the interval and declared a
|
|
547
|
+
# negative SD consistent.
|
|
548
|
+
fields = receipt_lines("grimmer", {
|
|
549
|
+
"n": "2", "reported_mean": "0.5", "scale_min": "0",
|
|
550
|
+
"scale_max": "1", "rounding_rule": "half-up",
|
|
551
|
+
"reported_sd": "-0.8", "sd_convention": "sample",
|
|
552
|
+
})
|
|
553
|
+
assert fields["status"] == "mismatch"
|
|
554
|
+
|
|
555
|
+
|
|
556
|
+
def test_single_response_population_sd_zero_is_consistent():
|
|
557
|
+
# codex P2-1: a population SD is defined (zero) for one response.
|
|
558
|
+
fields = receipt_lines("grimmer", {
|
|
559
|
+
"n": "1", "reported_mean": "3.0", "scale_min": "1",
|
|
560
|
+
"scale_max": "5", "rounding_rule": "half-up",
|
|
561
|
+
"reported_sd": "0.0", "sd_convention": "population",
|
|
562
|
+
})
|
|
563
|
+
assert fields["status"] == "consistent"
|
|
564
|
+
|
|
565
|
+
|
|
566
|
+
def test_single_response_sample_and_unstated_sd_stop_honestly():
|
|
567
|
+
sample = receipt_lines("grimmer", {
|
|
568
|
+
"n": "1", "reported_mean": "3.0", "scale_min": "1",
|
|
569
|
+
"scale_max": "5", "rounding_rule": "half-up",
|
|
570
|
+
"reported_sd": "0.0", "sd_convention": "sample",
|
|
571
|
+
})
|
|
572
|
+
assert sample["not_computable_reason"] == "analytic_n_ambiguous"
|
|
573
|
+
unstated = receipt_lines("grimmer", {
|
|
574
|
+
"n": "1", "reported_mean": "3.0", "scale_min": "1",
|
|
575
|
+
"scale_max": "5", "rounding_rule": "half-up",
|
|
576
|
+
"reported_sd": "0.0", "sd_convention": "unstated",
|
|
577
|
+
})
|
|
578
|
+
assert unstated["not_computable_reason"] == "sd_convention_unknown"
|
|
579
|
+
|
|
580
|
+
|
|
581
|
+
@pytest.mark.parametrize("family,df,fragment", [
|
|
582
|
+
("t", "3,84", "single integer df"),
|
|
583
|
+
("chi_square", "3,84", "single integer df"),
|
|
584
|
+
("z", "140", "df 'none'"),
|
|
585
|
+
("F", "140", "df as 'df1,df2'"),
|
|
586
|
+
])
|
|
587
|
+
def test_family_inconsistent_df_shapes_are_rejected(family, df, fragment):
|
|
588
|
+
# codex P2-2: a family-inconsistent df is a retryable gate diagnostic,
|
|
589
|
+
# never a misleading not_computable receipt.
|
|
590
|
+
with pytest.raises(rr.ExtractionError, match=fragment):
|
|
591
|
+
rr.parse_extraction(one_request("p_from_test_statistic", {
|
|
592
|
+
**P_FIELDS, "test_family": family, "df": df,
|
|
593
|
+
}))
|
|
594
|
+
|
|
595
|
+
|
|
596
|
+
@pytest.mark.parametrize("value", [
|
|
597
|
+
"single item, **Severity**: high",
|
|
598
|
+
"prose <!-- hidden -->",
|
|
599
|
+
"closing </computed_receipts> tag",
|
|
600
|
+
])
|
|
601
|
+
def test_forbidden_markup_tokens_in_values_are_rejected(value):
|
|
602
|
+
# security P2-2/P2-3/P2-4: pass-through values ride into the card
|
|
603
|
+
# under the identity gate, so machine-markup shapes are refused at the
|
|
604
|
+
# source.
|
|
605
|
+
text = one_request("grim", GRIM_FIELDS).replace(
|
|
606
|
+
"reported_inputs: the manuscript values under test",
|
|
607
|
+
f"reported_inputs: {value}",
|
|
608
|
+
)
|
|
609
|
+
with pytest.raises(rr.ExtractionError, match="forbidden token"):
|
|
610
|
+
rr.parse_extraction(text)
|
|
611
|
+
|
|
612
|
+
|
|
613
|
+
def test_carriage_return_in_machine_line_is_rejected():
|
|
614
|
+
text = one_request("grim", GRIM_FIELDS).replace(
|
|
615
|
+
"n: 87\n", "n: 87\rassumptions: smuggled\n",
|
|
616
|
+
)
|
|
617
|
+
with pytest.raises(rr.ExtractionError, match="carriage return"):
|
|
618
|
+
rr.parse_extraction(text)
|
|
619
|
+
|
|
620
|
+
|
|
621
|
+
def test_numeric_domain_bounds_are_enforced():
|
|
622
|
+
# security P1-2: shared gate/calculator bounds.
|
|
623
|
+
with pytest.raises(rr.ExtractionError, match="exceeds 18"):
|
|
624
|
+
rr.parse_extraction(one_request("grim", {
|
|
625
|
+
**GRIM_FIELDS, "n": "9" * 19,
|
|
626
|
+
}))
|
|
627
|
+
with pytest.raises(rr.ExtractionError, match="decimal places"):
|
|
628
|
+
rr.parse_extraction(one_request("p_from_test_statistic", {
|
|
629
|
+
**P_FIELDS, "reported_p_value": ".00000000008",
|
|
630
|
+
}))
|
|
631
|
+
with pytest.raises(rr.ExtractionError, match="convergence domain"):
|
|
632
|
+
rr.parse_extraction(one_request("p_from_test_statistic", {
|
|
633
|
+
**P_FIELDS, "df": "100000000",
|
|
634
|
+
}))
|
|
635
|
+
with pytest.raises(rr.ExtractionError, match="convergence domain"):
|
|
636
|
+
rr.parse_extraction(one_request("p_from_test_statistic", {
|
|
637
|
+
**P_FIELDS, "statistic_value": "20000000",
|
|
638
|
+
}))
|
|
639
|
+
|
|
640
|
+
|
|
641
|
+
def test_huge_df_inside_the_domain_converges():
|
|
642
|
+
# The cap is the verified convergence domain; its interior must work.
|
|
643
|
+
assert rr.chi2_tail_upper(1e7, 10**7) == pytest.approx(0.5, abs=1e-3)
|
|
644
|
+
assert rr.f_tail_upper(1.0, 10**7, 10**7) == pytest.approx(0.5, abs=1e-3)
|
|
645
|
+
assert rr.t_tail_two(1.31, 10**7) == pytest.approx(0.19, abs=1e-2)
|
|
646
|
+
|
|
647
|
+
|
|
648
|
+
def test_grim_window_budget_refuses_honestly():
|
|
649
|
+
# security P1-2: a zero-decimal mean over a huge N would iterate a
|
|
650
|
+
# ~2N-wide candidate window; the budget refuses instead.
|
|
651
|
+
fields = receipt_lines("grim", {
|
|
652
|
+
"n": "10000000", "reported_mean": "3", "scale_min": "1",
|
|
653
|
+
"scale_max": "5", "rounding_rule": "half-up",
|
|
654
|
+
})
|
|
655
|
+
assert fields["status"] == "not_computable"
|
|
656
|
+
assert fields["not_computable_reason"] == "reachability_not_completed"
|
|
657
|
+
|
|
658
|
+
|
|
659
|
+
def test_grimmer_element_budget_refuses_honestly(monkeypatch):
|
|
660
|
+
monkeypatch.setattr(rr, "_ELEMENT_BUDGET", 1)
|
|
661
|
+
fields = receipt_lines("grimmer", {
|
|
662
|
+
**GRIMMER_FIELDS, "n": "12",
|
|
663
|
+
})
|
|
664
|
+
assert fields["status"] == "not_computable"
|
|
665
|
+
assert fields["not_computable_reason"] == "reachability_not_completed"
|
|
666
|
+
|
|
667
|
+
|
|
668
|
+
def test_fence_info_string_with_backtick_is_content_not_a_fence():
|
|
669
|
+
# codex P2-3: a backtick fence's info string may not contain a
|
|
670
|
+
# backtick (CommonMark), so this line is a paragraph — and inside the
|
|
671
|
+
# section a paragraph is a loud abort, never a silent drop.
|
|
672
|
+
text = one_request("grim", GRIM_FIELDS) + "````bad`tick\n"
|
|
673
|
+
with pytest.raises(rr.ExtractionError, match="not a machine line"):
|
|
674
|
+
rr.parse_extraction(text)
|
|
675
|
+
|
|
676
|
+
|
|
677
|
+
def test_stateful_fence_keeps_interior_and_drops_delimiters():
|
|
678
|
+
text = one_request("grim", GRIM_FIELDS).replace(
|
|
679
|
+
"n: 87\n", "```python\nn: 87\n```\n",
|
|
680
|
+
)
|
|
681
|
+
extraction = rr.parse_extraction(text)
|
|
682
|
+
assert extraction.requests[0]["n"] == "87"
|
|
683
|
+
|
|
684
|
+
|
|
685
|
+
def test_receipts_never_carry_crlf(tmp_path):
|
|
686
|
+
# codex P2-5: artifact bytes are pinned LF regardless of platform
|
|
687
|
+
# newline translation defaults.
|
|
688
|
+
extraction = tmp_path / "extraction.md"
|
|
689
|
+
output = tmp_path / "receipts.md"
|
|
690
|
+
extraction.write_text(one_request("grim", GRIM_FIELDS), encoding="utf-8")
|
|
691
|
+
assert rr.main([
|
|
692
|
+
"--extraction", str(extraction), "--output", str(output),
|
|
693
|
+
]) == 0
|
|
694
|
+
assert b"\r" not in output.read_bytes()
|
|
695
|
+
|
|
696
|
+
|
|
697
|
+
def test_cli_output_is_write_once(tmp_path):
|
|
698
|
+
extraction = tmp_path / "extraction.md"
|
|
699
|
+
output = tmp_path / "receipts.md"
|
|
700
|
+
extraction.write_text(one_request("grim", GRIM_FIELDS), encoding="utf-8")
|
|
701
|
+
output.write_text("already here", encoding="utf-8")
|
|
702
|
+
assert rr.main([
|
|
703
|
+
"--extraction", str(extraction), "--output", str(output),
|
|
704
|
+
]) == 2
|
|
705
|
+
assert output.read_text(encoding="utf-8") == "already here"
|
|
706
|
+
|
|
707
|
+
|
|
708
|
+
# --- dual-track review round 2 hardening ----------------------------------
|
|
709
|
+
|
|
710
|
+
|
|
711
|
+
def test_ten_decimal_places_are_in_domain():
|
|
712
|
+
# codex round 2 NEW P1: `.0000008` is a legal printed p and must be
|
|
713
|
+
# transcribable; ultra-fine comparisons degrade to the boundary guard,
|
|
714
|
+
# never to an unsatisfiable gate rejection.
|
|
715
|
+
fields = receipt_lines("p_from_test_statistic", {
|
|
716
|
+
**P_FIELDS, "reported_p_value": ".0000008",
|
|
717
|
+
})
|
|
718
|
+
assert fields["status"] == "mismatch" # .192/.096 vs 8e-7
|
|
719
|
+
|
|
720
|
+
|
|
721
|
+
def test_near_one_p_displays_below_one():
|
|
722
|
+
# codex round 2 NEW P2: the displayed value must sit on the same side
|
|
723
|
+
# of 1 as the compared one.
|
|
724
|
+
fields = receipt_lines("p_from_test_statistic", {
|
|
725
|
+
"test_family": "t", "statistic_value": ".00000001", "df": "1",
|
|
726
|
+
"reported_p_comparator": "less_than", "reported_p_value": "1",
|
|
727
|
+
"tail_convention": "two-tailed",
|
|
728
|
+
})
|
|
729
|
+
assert fields["status"] == "consistent"
|
|
730
|
+
assert "p = 1 (" not in fields["derived_value_or_range"]
|
|
731
|
+
assert "0.99999999" in fields["derived_value_or_range"]
|
|
732
|
+
|
|
733
|
+
|
|
734
|
+
def test_half_even_interval_endpoints_follow_target_parity():
|
|
735
|
+
# codex round 2: an odd target owns neither tie endpoint; an even one
|
|
736
|
+
# owns both.
|
|
737
|
+
odd = receipt_lines("grim", {
|
|
738
|
+
"n": "4", "reported_mean": "1.3", "scale_min": "1",
|
|
739
|
+
"scale_max": "5", "rounding_rule": "half-even",
|
|
740
|
+
})
|
|
741
|
+
assert odd["rounding_interval"].startswith("1.25 < mean < 1.35")
|
|
742
|
+
even = receipt_lines("grim", {
|
|
743
|
+
"n": "4", "reported_mean": "1.2", "scale_min": "1",
|
|
744
|
+
"scale_max": "5", "rounding_rule": "half-even",
|
|
745
|
+
})
|
|
746
|
+
assert even["rounding_interval"].startswith("1.15 <= mean <= 1.25")
|
|
747
|
+
|
|
748
|
+
|
|
749
|
+
def test_truncation_interval_at_zero_covers_both_sides():
|
|
750
|
+
fields = receipt_lines("grim", {
|
|
751
|
+
"n": "4", "reported_mean": "0", "scale_min": "-2",
|
|
752
|
+
"scale_max": "2", "rounding_rule": "truncation",
|
|
753
|
+
})
|
|
754
|
+
assert fields["rounding_interval"].startswith("-1.0 < mean < 1.0")
|
|
755
|
+
|
|
756
|
+
|
|
757
|
+
def test_work_budget_bounds_infeasible_spinning(monkeypatch):
|
|
758
|
+
# security round 2 NEW-2: iterations are bounded, not just retained
|
|
759
|
+
# states.
|
|
760
|
+
monkeypatch.setattr(rr, "_WORK_BUDGET", 5)
|
|
761
|
+
fields = receipt_lines("grimmer", {**GRIMMER_FIELDS, "n": "30"})
|
|
762
|
+
assert fields["not_computable_reason"] == "reachability_not_completed"
|
|
763
|
+
|
|
764
|
+
|
|
765
|
+
def test_tail_functions_terminate_at_domain_corners():
|
|
766
|
+
# security round 2 NEW-3: the declared 1e7 convergence domain, swept at
|
|
767
|
+
# its corners — termination and range, not reference values.
|
|
768
|
+
corners = [
|
|
769
|
+
rr.t_tail_two(1e7, 10**7), rr.t_tail_two(1e7, 1),
|
|
770
|
+
rr.t_tail_two(1e-7, 10**7),
|
|
771
|
+
rr.z_tail_two(1e7), rr.z_tail_two(1e-7),
|
|
772
|
+
rr.chi2_tail_upper(1e7, 10**7), rr.chi2_tail_upper(1e-7, 10**7),
|
|
773
|
+
rr.chi2_tail_upper(1e7, 1),
|
|
774
|
+
rr.f_tail_upper(1e7, 10**7, 10**7), rr.f_tail_upper(1e7, 1, 1),
|
|
775
|
+
rr.f_tail_upper(1e-7, 10**7, 10**7), rr.f_tail_upper(1e-7, 1, 1),
|
|
776
|
+
]
|
|
777
|
+
for value in corners:
|
|
778
|
+
assert 0.0 <= value <= 1.0
|