psyclaw 0.27.22 → 0.28.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1048) hide show
  1. package/README.md +11 -5
  2. package/dist/apps/panel/index.html +2 -2
  3. package/dist/src/adapters/pi/extension.js +225 -92
  4. package/dist/src/adapters/pi/extension.js.map +1 -1
  5. package/dist/src/agents/import.js +44 -32
  6. package/dist/src/agents/import.js.map +1 -1
  7. package/dist/src/analysis/hooks.d.ts +1 -0
  8. package/dist/src/analysis/hooks.js +20 -1
  9. package/dist/src/analysis/hooks.js.map +1 -1
  10. package/dist/src/ars/bridge.d.ts +20 -0
  11. package/dist/src/ars/bridge.js +132 -0
  12. package/dist/src/ars/bridge.js.map +1 -0
  13. package/dist/src/ars/contracts.d.ts +55 -0
  14. package/dist/src/ars/contracts.js +2 -0
  15. package/dist/src/ars/contracts.js.map +1 -0
  16. package/dist/src/ars/panel-plan.d.ts +4 -0
  17. package/dist/src/ars/panel-plan.js +11 -0
  18. package/dist/src/ars/panel-plan.js.map +1 -0
  19. package/dist/src/ars/pi-panel-executor.d.ts +30 -0
  20. package/dist/src/ars/pi-panel-executor.js +140 -0
  21. package/dist/src/ars/pi-panel-executor.js.map +1 -0
  22. package/dist/src/ars/profile.d.ts +36 -0
  23. package/dist/src/ars/profile.js +119 -0
  24. package/dist/src/ars/profile.js.map +1 -0
  25. package/dist/src/ars/re-review.d.ts +22 -0
  26. package/dist/src/ars/re-review.js +172 -0
  27. package/dist/src/ars/re-review.js.map +1 -0
  28. package/dist/src/branding.d.ts +2 -4
  29. package/dist/src/branding.js +3 -5
  30. package/dist/src/branding.js.map +1 -1
  31. package/dist/src/bundled-tools.d.ts +3 -0
  32. package/dist/src/bundled-tools.js +21 -0
  33. package/dist/src/bundled-tools.js.map +1 -0
  34. package/dist/src/chat.js +6 -5
  35. package/dist/src/chat.js.map +1 -1
  36. package/dist/src/creation/contracts.d.ts +38 -0
  37. package/dist/src/creation/contracts.js +2 -0
  38. package/dist/src/creation/contracts.js.map +1 -0
  39. package/dist/src/creation/service.d.ts +7 -0
  40. package/dist/src/creation/service.js +196 -0
  41. package/dist/src/creation/service.js.map +1 -0
  42. package/dist/src/index.d.ts +10 -0
  43. package/dist/src/index.js +10 -0
  44. package/dist/src/index.js.map +1 -1
  45. package/dist/src/install/installer.js +32 -10
  46. package/dist/src/install/installer.js.map +1 -1
  47. package/dist/src/orchestration/personas.d.ts +15 -0
  48. package/dist/src/orchestration/personas.js +51 -0
  49. package/dist/src/orchestration/personas.js.map +1 -0
  50. package/dist/src/orchestration/pi-executor.d.ts +1 -0
  51. package/dist/src/orchestration/pi-executor.js +1 -1
  52. package/dist/src/orchestration/pi-executor.js.map +1 -1
  53. package/dist/src/panel/extension.js +29 -8
  54. package/dist/src/panel/extension.js.map +1 -1
  55. package/dist/src/panel/server.js +14 -5
  56. package/dist/src/panel/server.js.map +1 -1
  57. package/dist/src/project/paths.d.ts +3 -0
  58. package/dist/src/project/paths.js +7 -0
  59. package/dist/src/project/paths.js.map +1 -1
  60. package/dist/src/rules/user-rules.d.ts +8 -0
  61. package/dist/src/rules/user-rules.js +36 -0
  62. package/dist/src/rules/user-rules.js.map +1 -0
  63. package/dist/src/skills/contracts.d.ts +4 -4
  64. package/dist/src/skills/recommended.js +1 -1
  65. package/dist/src/skills/registry.js +49 -28
  66. package/dist/src/skills/registry.js.map +1 -1
  67. package/dist/src/style/cli-ui.js +0 -1
  68. package/dist/src/style/cli-ui.js.map +1 -1
  69. package/package.json +14 -3
  70. package/scripts/rebrand-pi.mjs +6 -0
  71. package/skills/recommended/catalog.json +2 -11
  72. package/vendor/ars/.claude/CLAUDE.md +371 -0
  73. package/vendor/ars/.command-invariants.toml +24 -0
  74. package/vendor/ars/CITATION.cff +35 -0
  75. package/vendor/ars/LICENSE +417 -0
  76. package/vendor/ars/MODE_REGISTRY.md +76 -0
  77. package/vendor/ars/NOTICE.md +26 -0
  78. package/vendor/ars/POSITIONING.md +99 -0
  79. package/vendor/ars/PSYCLAW_SOURCE.json +10 -0
  80. package/vendor/ars/README.md +751 -0
  81. package/vendor/ars/SECURITY.md +52 -0
  82. package/vendor/ars/THIRD_PARTY.md +70 -0
  83. package/vendor/ars/academic-paper/SKILL.md +542 -0
  84. package/vendor/ars/academic-paper/agents/abstract_bilingual_agent.md +171 -0
  85. package/vendor/ars/academic-paper/agents/argument_builder_agent.md +276 -0
  86. package/vendor/ars/academic-paper/agents/citation_compliance_agent.md +422 -0
  87. package/vendor/ars/academic-paper/agents/draft_writer_agent.md +656 -0
  88. package/vendor/ars/academic-paper/agents/formatter_agent.md +999 -0
  89. package/vendor/ars/academic-paper/agents/intake_agent.md +393 -0
  90. package/vendor/ars/academic-paper/agents/literature_strategist_agent.md +626 -0
  91. package/vendor/ars/academic-paper/agents/peer_reviewer_agent.md +516 -0
  92. package/vendor/ars/academic-paper/agents/revision_coach_agent.md +334 -0
  93. package/vendor/ars/academic-paper/agents/socratic_mentor_agent.md +527 -0
  94. package/vendor/ars/academic-paper/agents/structure_architect_agent.md +401 -0
  95. package/vendor/ars/academic-paper/agents/visualization_agent.md +441 -0
  96. package/vendor/ars/academic-paper/examples/chinese_paper_example.md +278 -0
  97. package/vendor/ars/academic-paper/examples/clinical_citation_verification_checklist.md +95 -0
  98. package/vendor/ars/academic-paper/examples/clinical_epistemic_status_example.md +100 -0
  99. package/vendor/ars/academic-paper/examples/commitment_ledger_example.md +147 -0
  100. package/vendor/ars/academic-paper/examples/imrad_hei_example.md +234 -0
  101. package/vendor/ars/academic-paper/examples/literature_review_example.md +260 -0
  102. package/vendor/ars/academic-paper/examples/plan_mode_guided_writing.md +600 -0
  103. package/vendor/ars/academic-paper/examples/revision_mode_example.md +344 -0
  104. package/vendor/ars/academic-paper/examples/revision_recovery_example.md +506 -0
  105. package/vendor/ars/academic-paper/examples/version_family_reconciliation_example.md +89 -0
  106. package/vendor/ars/academic-paper/references/abstract_writing_guide.md +169 -0
  107. package/vendor/ars/academic-paper/references/academic_writing_style.md +188 -0
  108. package/vendor/ars/academic-paper/references/anti_leakage_protocol.md +83 -0
  109. package/vendor/ars/academic-paper/references/apa7_chinese_citation_guide.md +364 -0
  110. package/vendor/ars/academic-paper/references/apa7_extended_guide.md +198 -0
  111. package/vendor/ars/academic-paper/references/changelog.md +11 -0
  112. package/vendor/ars/academic-paper/references/citation_format_switcher.md +228 -0
  113. package/vendor/ars/academic-paper/references/committee_correspondence_protocol.md +158 -0
  114. package/vendor/ars/academic-paper/references/credit_authorship_guide.md +308 -0
  115. package/vendor/ars/academic-paper/references/disclosure_mode_protocol.md +478 -0
  116. package/vendor/ars/academic-paper/references/domain_evidence_profiles.md +38 -0
  117. package/vendor/ars/academic-paper/references/failure_paths.md +349 -0
  118. package/vendor/ars/academic-paper/references/funding_statement_guide.md +319 -0
  119. package/vendor/ars/academic-paper/references/hei_domain_glossary.md +169 -0
  120. package/vendor/ars/academic-paper/references/intro_title_rhetoric_guide.md +114 -0
  121. package/vendor/ars/academic-paper/references/journal_submission_guide.md +249 -0
  122. package/vendor/ars/academic-paper/references/latex_template_reference.md +378 -0
  123. package/vendor/ars/academic-paper/references/mode_selection_guide.md +378 -0
  124. package/vendor/ars/academic-paper/references/paper_structure_patterns.md +330 -0
  125. package/vendor/ars/academic-paper/references/plan_mode_protocol.md +112 -0
  126. package/vendor/ars/academic-paper/references/policy_anchor_disclosure_protocol.md +200 -0
  127. package/vendor/ars/academic-paper/references/policy_anchor_table.md +157 -0
  128. package/vendor/ars/academic-paper/references/revision_patch_protocol.md +173 -0
  129. package/vendor/ars/academic-paper/references/statistical_visualization_standards.md +750 -0
  130. package/vendor/ars/academic-paper/references/venue_disclosure_policies.md +259 -0
  131. package/vendor/ars/academic-paper/references/vlm_figure_verification.md +126 -0
  132. package/vendor/ars/academic-paper/references/workflow_phase_details.md +135 -0
  133. package/vendor/ars/academic-paper/references/writing_judgment_framework.md +59 -0
  134. package/vendor/ars/academic-paper/references/writing_quality_check.md +173 -0
  135. package/vendor/ars/academic-paper/templates/bilingual_abstract_template.md +78 -0
  136. package/vendor/ars/academic-paper/templates/case_study_template.md +129 -0
  137. package/vendor/ars/academic-paper/templates/conference_paper_template.md +108 -0
  138. package/vendor/ars/academic-paper/templates/credit_statement_template.md +132 -0
  139. package/vendor/ars/academic-paper/templates/funding_statement_template.md +290 -0
  140. package/vendor/ars/academic-paper/templates/imrad_template.md +183 -0
  141. package/vendor/ars/academic-paper/templates/latex_article_template.tex +199 -0
  142. package/vendor/ars/academic-paper/templates/literature_review_template.md +135 -0
  143. package/vendor/ars/academic-paper/templates/policy_brief_template.md +139 -0
  144. package/vendor/ars/academic-paper/templates/revision_tracking_template.md +199 -0
  145. package/vendor/ars/academic-paper/templates/theoretical_paper_template.md +119 -0
  146. package/vendor/ars/academic-paper-reviewer/SKILL.md +491 -0
  147. package/vendor/ars/academic-paper-reviewer/agents/devils_advocate_reviewer_agent.md +443 -0
  148. package/vendor/ars/academic-paper-reviewer/agents/domain_reviewer_agent.md +412 -0
  149. package/vendor/ars/academic-paper-reviewer/agents/editorial_synthesizer_agent.md +478 -0
  150. package/vendor/ars/academic-paper-reviewer/agents/eic_agent.md +339 -0
  151. package/vendor/ars/academic-paper-reviewer/agents/field_analyst_agent.md +221 -0
  152. package/vendor/ars/academic-paper-reviewer/agents/methodology_reviewer_agent.md +449 -0
  153. package/vendor/ars/academic-paper-reviewer/agents/perspective_reviewer_agent.md +427 -0
  154. package/vendor/ars/academic-paper-reviewer/examples/hei_paper_review_example.md +391 -0
  155. package/vendor/ars/academic-paper-reviewer/examples/interdisciplinary_review_example.md +299 -0
  156. package/vendor/ars/academic-paper-reviewer/examples/subclaim_decomposition_example.md +80 -0
  157. package/vendor/ars/academic-paper-reviewer/references/calibration_mode_protocol.md +256 -0
  158. package/vendor/ars/academic-paper-reviewer/references/changelog.md +10 -0
  159. package/vendor/ars/academic-paper-reviewer/references/editorial_decision_standards.md +236 -0
  160. package/vendor/ars/academic-paper-reviewer/references/guided_mode_protocol.md +34 -0
  161. package/vendor/ars/academic-paper-reviewer/references/integration_guide.md +15 -0
  162. package/vendor/ars/academic-paper-reviewer/references/quality_rubrics.md +84 -0
  163. package/vendor/ars/academic-paper-reviewer/references/re_review_mode_protocol.md +340 -0
  164. package/vendor/ars/academic-paper-reviewer/references/review_criteria_framework.md +98 -0
  165. package/vendor/ars/academic-paper-reviewer/references/review_panel_provenance_protocol.md +197 -0
  166. package/vendor/ars/academic-paper-reviewer/references/review_quality_thinking.md +58 -0
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  169. package/vendor/ars/academic-paper-reviewer/references/statistical_reporting_standards.md +505 -0
  170. package/vendor/ars/academic-paper-reviewer/references/top_journals_by_field.md +206 -0
  171. package/vendor/ars/academic-paper-reviewer/templates/editorial_decision_template.md +235 -0
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  175. package/vendor/ars/academic-pipeline/agents/claim_ref_alignment_audit_agent.md +382 -0
  176. package/vendor/ars/academic-pipeline/agents/collaboration_depth_agent.md +164 -0
  177. package/vendor/ars/academic-pipeline/agents/integrity_verification_agent.md +870 -0
  178. package/vendor/ars/academic-pipeline/agents/pipeline_orchestrator_agent.md +1379 -0
  179. package/vendor/ars/academic-pipeline/agents/state_tracker_agent.md +622 -0
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  181. package/vendor/ars/academic-pipeline/examples/integrity_failure_recovery.md +389 -0
  182. package/vendor/ars/academic-pipeline/examples/mid_entry_example.md +414 -0
  183. package/vendor/ars/academic-pipeline/references/adapters/.gitkeep +0 -0
  184. package/vendor/ars/academic-pipeline/references/adapters/overview.md +153 -0
  185. package/vendor/ars/academic-pipeline/references/ai_research_failure_modes.md +185 -0
  186. package/vendor/ars/academic-pipeline/references/changelog.md +14 -0
  187. package/vendor/ars/academic-pipeline/references/claim_audit_calibration_protocol.md +175 -0
  188. package/vendor/ars/academic-pipeline/references/claim_verification_protocol.md +282 -0
  189. package/vendor/ars/academic-pipeline/references/external_review_protocol.md +131 -0
  190. package/vendor/ars/academic-pipeline/references/integrity_review_protocol.md +110 -0
  191. package/vendor/ars/academic-pipeline/references/literature_corpus_consumers.md +193 -0
  192. package/vendor/ars/academic-pipeline/references/mode_advisor.md +135 -0
  193. package/vendor/ars/academic-pipeline/references/passport_as_reset_boundary.md +132 -0
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  204. package/vendor/ars/agents/report_compiler_agent.md +341 -0
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  207. package/vendor/ars/commands/ars-3w.md +10 -0
  208. package/vendor/ars/commands/ars-abstract.md +10 -0
  209. package/vendor/ars/commands/ars-cache-invalidate.md +20 -0
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  213. package/vendor/ars/commands/ars-full.md +9 -0
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@@ -0,0 +1,910 @@
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+ """Unit tests for scripts/ars_mark_read.py.
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+
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+ Per v3.6.8 spec §3.6 + Step 7 (round-2 R2-002, round-5 R5-003 amends).
4
+ Covers:
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+ - 4 fail-fast modes (no active passport / passport not found / parent unreadable / read-log unwritable)
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+ - First-time write (creates file with YAML schema header)
7
+ - Citation-key validation against active literature_corpus[]
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+ - Batch form (space-separated keys)
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+ - Append-only write (existing entries preserved)
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+ - /ars-unmark-read writes rescinded_at (never deletes)
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+ - Idempotency on re-mark of same key (append, not in-place)
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+ """
13
+ from __future__ import annotations
14
+
15
+ import os
16
+ import stat
17
+ import threading
18
+ import unittest
19
+ from contextlib import redirect_stderr
20
+ from io import StringIO
21
+ from pathlib import Path
22
+ from tempfile import TemporaryDirectory
23
+ from unittest.mock import patch
24
+
25
+ import yaml
26
+
27
+ from scripts import ars_mark_read
28
+ from tests.test_helpers import run_script
29
+
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+
31
+ SCRIPT = Path(__file__).parent / "ars_mark_read.py"
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+
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+
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+ # Minimal Material Passport carrying a literature_corpus[] with 2 entries.
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+ # Passport is YAML per adapter contract (folder_scan / zotero / obsidian all
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+ # emit YAML); only the literature_corpus[] field is consulted by
37
+ # ars_mark_read for citation_key validation.
38
+ def _write_passport(path: Path, *, citation_keys: list[str]) -> None:
39
+ payload = {
40
+ "literature_corpus": [
41
+ {"citation_key": k, "year": 2024, "title": f"Title {k}"}
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+ for k in citation_keys
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+ ],
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+ }
45
+ with path.open("w", encoding="utf-8") as f:
46
+ yaml.safe_dump(payload, f, sort_keys=False, allow_unicode=True)
47
+
48
+
49
+ def _read_log(passport_path: Path) -> dict:
50
+ log_path = passport_path.parent / f"{passport_path.stem}_human_read_log.yaml"
51
+ with log_path.open(encoding="utf-8") as f:
52
+ return yaml.safe_load(f)
53
+
54
+
55
+ class TestMarkReadHappyPath(unittest.TestCase):
56
+ def test_first_time_write_creates_file_with_schema_header(self) -> None:
57
+ """Spec §3.6 R5-003: first-time write creates the file with the YAML
58
+ schema header before appending. Not a fail-fast mode."""
59
+ with TemporaryDirectory() as tmp:
60
+ root = Path(tmp)
61
+ passport = root / "passport_abc123.json"
62
+ _write_passport(passport, citation_keys=["smith2024"])
63
+
64
+ result = run_script(
65
+ SCRIPT, "smith2024", "--passport-path", str(passport),
66
+ "--scope", "full_text",
67
+ )
68
+
69
+ self.assertEqual(result.returncode, 0, msg=f"stderr: {result.stderr}")
70
+ log_data = _read_log(passport)
71
+ self.assertIn("session_id", log_data)
72
+ self.assertIn("created_at", log_data)
73
+ self.assertEqual(len(log_data["human_read"]), 1)
74
+ self.assertEqual(log_data["human_read"][0]["citation_key"], "smith2024")
75
+ self.assertIn("marked_at", log_data["human_read"][0])
76
+ self.assertEqual(
77
+ log_data["human_read"][0]["attestation_type"],
78
+ "USER_ATTESTED_READ",
79
+ )
80
+
81
+ def test_batch_form_appends_multiple_entries(self) -> None:
82
+ """Spec §3.6: /ars-mark-read accepts space-separated keys (batch form).
83
+ Each key produces one entry."""
84
+ with TemporaryDirectory() as tmp:
85
+ root = Path(tmp)
86
+ passport = root / "passport_abc123.json"
87
+ _write_passport(passport, citation_keys=["smith2024", "jones2023"])
88
+
89
+ result = run_script(
90
+ SCRIPT, "smith2024", "jones2023", "--passport-path", str(passport),
91
+ "--scope", "full_text",
92
+ )
93
+
94
+ self.assertEqual(result.returncode, 0, msg=f"stderr: {result.stderr}")
95
+ log_data = _read_log(passport)
96
+ keys = [e["citation_key"] for e in log_data["human_read"]]
97
+ self.assertEqual(keys, ["smith2024", "jones2023"])
98
+
99
+ def test_append_only_preserves_existing_entries(self) -> None:
100
+ """Spec §3.6 firm rule 3: log is append-only. New marks do not
101
+ rewrite or replace prior entries."""
102
+ with TemporaryDirectory() as tmp:
103
+ root = Path(tmp)
104
+ passport = root / "passport_abc123.json"
105
+ _write_passport(passport, citation_keys=["smith2024", "jones2023"])
106
+
107
+ # First mark
108
+ run_script(
109
+ SCRIPT, "smith2024", "--passport-path", str(passport),
110
+ "--scope", "full_text",
111
+ )
112
+ # Second mark, different key
113
+ result = run_script(
114
+ SCRIPT, "jones2023", "--passport-path", str(passport),
115
+ "--scope", "full_text",
116
+ )
117
+
118
+ self.assertEqual(result.returncode, 0, msg=f"stderr: {result.stderr}")
119
+ log_data = _read_log(passport)
120
+ keys = [e["citation_key"] for e in log_data["human_read"]]
121
+ self.assertEqual(keys, ["smith2024", "jones2023"])
122
+
123
+
124
+ class TestMarkReadFailFast(unittest.TestCase):
125
+ """4 fail-fast modes per spec §3.6 R5-003 amend."""
126
+
127
+ def test_no_active_passport_fails(self) -> None:
128
+ """Fail-fast mode 1: --passport-path omitted and no ambient
129
+ passport discoverable. Emit canonical error, exit non-zero."""
130
+ with TemporaryDirectory() as tmp:
131
+ result = run_script(SCRIPT, "smith2024", cwd=Path(tmp))
132
+
133
+ self.assertNotEqual(result.returncode, 0)
134
+ self.assertIn("[ARS-MARK-READ ERROR:", result.stderr + result.stdout)
135
+ self.assertIn("no active passport path", result.stderr + result.stdout)
136
+
137
+ def test_passport_not_found_fails(self) -> None:
138
+ """Fail-fast mode 2: --passport-path points to non-existent file."""
139
+ with TemporaryDirectory() as tmp:
140
+ phantom = Path(tmp) / "does_not_exist.json"
141
+
142
+ result = run_script(
143
+ SCRIPT, "smith2024", "--passport-path", str(phantom)
144
+ )
145
+
146
+ self.assertNotEqual(result.returncode, 0)
147
+ self.assertIn("[ARS-MARK-READ ERROR:", result.stderr + result.stdout)
148
+ self.assertIn("passport file not found", result.stderr + result.stdout)
149
+
150
+ def test_passport_parent_unreadable_fails(self) -> None:
151
+ """Fail-fast mode 3: passport parent directory lacks R_OK."""
152
+ if os.geteuid() == 0:
153
+ self.skipTest("root bypasses POSIX permissions")
154
+ with TemporaryDirectory() as tmp:
155
+ root = Path(tmp)
156
+ locked = root / "locked"
157
+ locked.mkdir()
158
+ passport = locked / "passport.json"
159
+ _write_passport(passport, citation_keys=["smith2024"])
160
+ # Strip read permission from the parent dir.
161
+ os.chmod(locked, 0o000)
162
+ try:
163
+ result = run_script(
164
+ SCRIPT, "smith2024", "--passport-path", str(passport)
165
+ )
166
+
167
+ self.assertNotEqual(result.returncode, 0)
168
+ self.assertIn(
169
+ "[ARS-MARK-READ ERROR:", result.stderr + result.stdout
170
+ )
171
+ self.assertIn(
172
+ "unreadable", result.stderr + result.stdout
173
+ )
174
+ finally:
175
+ # Restore permissions so TemporaryDirectory cleanup works.
176
+ os.chmod(locked, 0o700)
177
+
178
+ def test_readlog_unwritable_fails(self) -> None:
179
+ """Fail-fast mode 4: read-log parent (== passport parent) lacks W_OK.
180
+ Spec §3.6 R5-003: refuse to write when target is unwritable."""
181
+ if os.geteuid() == 0:
182
+ self.skipTest("root bypasses POSIX permissions")
183
+ with TemporaryDirectory() as tmp:
184
+ root = Path(tmp)
185
+ passport = root / "passport.json"
186
+ _write_passport(passport, citation_keys=["smith2024"])
187
+ # Read-only parent: can stat the passport but cannot create the
188
+ # sibling read-log file.
189
+ os.chmod(root, 0o500)
190
+ try:
191
+ result = run_script(
192
+ SCRIPT, "smith2024", "--passport-path", str(passport)
193
+ )
194
+
195
+ self.assertNotEqual(result.returncode, 0)
196
+ self.assertIn(
197
+ "[ARS-MARK-READ ERROR:", result.stderr + result.stdout
198
+ )
199
+ self.assertIn("unwritable", result.stderr + result.stdout)
200
+ finally:
201
+ os.chmod(root, 0o700)
202
+
203
+
204
+ class TestMarkReadCitationKeyValidation(unittest.TestCase):
205
+ def test_invalid_citation_key_hard_errors(self) -> None:
206
+ """Spec §3.6 firm rule 2: invalid <citation_key> is a hard error,
207
+ not a silent miss. Canonical message includes the slug."""
208
+ with TemporaryDirectory() as tmp:
209
+ root = Path(tmp)
210
+ passport = root / "passport.json"
211
+ _write_passport(passport, citation_keys=["smith2024"])
212
+
213
+ result = run_script(
214
+ SCRIPT, "bogus_key", "--passport-path", str(passport)
215
+ )
216
+
217
+ self.assertNotEqual(result.returncode, 0)
218
+ combined = result.stderr + result.stdout
219
+ self.assertIn("[ARS-MARK-READ ERROR:", combined)
220
+ self.assertIn("'bogus_key'", combined)
221
+ self.assertIn("not in literature_corpus[]", combined)
222
+ # Spec firm rule 2: refuse to write. No read-log file should be
223
+ # created from an invalid attempt.
224
+ log_path = passport.parent / "passport_human_read_log.yaml"
225
+ self.assertFalse(
226
+ log_path.exists(),
227
+ msg="invalid key must not create the read-log file",
228
+ )
229
+
230
+ def test_batch_with_one_invalid_key_rejects_whole_batch(self) -> None:
231
+ """Spec firm rule 2 (refuse to write) applied to batch: if any key
232
+ in the batch is invalid, the whole batch is rejected. No partial
233
+ writes. This preserves the all-or-nothing semantic that audit
234
+ replay relies on."""
235
+ with TemporaryDirectory() as tmp:
236
+ root = Path(tmp)
237
+ passport = root / "passport.json"
238
+ _write_passport(passport, citation_keys=["smith2024"])
239
+
240
+ result = run_script(
241
+ SCRIPT,
242
+ "smith2024",
243
+ "bogus_key",
244
+ "--passport-path",
245
+ str(passport),
246
+ )
247
+
248
+ self.assertNotEqual(result.returncode, 0)
249
+ self.assertIn(
250
+ "[ARS-MARK-READ ERROR:", result.stderr + result.stdout
251
+ )
252
+ log_path = passport.parent / "passport_human_read_log.yaml"
253
+ self.assertFalse(
254
+ log_path.exists(),
255
+ msg="partial batch write must not occur on any invalid key",
256
+ )
257
+
258
+
259
+ class TestUnmarkRead(unittest.TestCase):
260
+ def test_unmark_writes_rescinded_at(self) -> None:
261
+ """Spec §3.6 firm rule 3 + Step 7: /ars-unmark-read writes
262
+ rescinded_at to the matching entry, never deletes."""
263
+ with TemporaryDirectory() as tmp:
264
+ root = Path(tmp)
265
+ passport = root / "passport.json"
266
+ _write_passport(passport, citation_keys=["smith2024"])
267
+ run_script(
268
+ SCRIPT, "smith2024", "--passport-path", str(passport),
269
+ "--scope", "full_text",
270
+ )
271
+
272
+ result = run_script(
273
+ SCRIPT, "smith2024", "--passport-path", str(passport), "--unmark"
274
+ )
275
+
276
+ self.assertEqual(result.returncode, 0, msg=f"stderr: {result.stderr}")
277
+ log_data = _read_log(passport)
278
+ # Original entry preserved (not deleted).
279
+ self.assertEqual(len(log_data["human_read"]), 1)
280
+ entry = log_data["human_read"][0]
281
+ self.assertEqual(entry["citation_key"], "smith2024")
282
+ self.assertIn("marked_at", entry)
283
+ self.assertIn("rescinded_at", entry)
284
+
285
+ def test_unmark_unknown_key_hard_errors(self) -> None:
286
+ """/ars-unmark-read for a citation_key that was never marked is
287
+ a hard error. Audit-replay requires the rescind target exist."""
288
+ with TemporaryDirectory() as tmp:
289
+ root = Path(tmp)
290
+ passport = root / "passport.json"
291
+ _write_passport(passport, citation_keys=["smith2024", "jones2023"])
292
+ run_script(
293
+ SCRIPT, "smith2024", "--passport-path", str(passport),
294
+ "--scope", "full_text",
295
+ )
296
+
297
+ result = run_script(
298
+ SCRIPT, "jones2023", "--passport-path", str(passport), "--unmark"
299
+ )
300
+
301
+ self.assertNotEqual(result.returncode, 0)
302
+ self.assertIn(
303
+ "[ARS-MARK-READ ERROR:", result.stderr + result.stdout
304
+ )
305
+
306
+
307
+ class TestMarkReadYAMLPassport(unittest.TestCase):
308
+ """Issue #195: real adapter output is YAML, not JSON. Earlier fixtures
309
+ wrote JSON which was a parser-coincidence pass (YAML is a JSON superset).
310
+ These tests pin the real adapter-format expectation with .yaml extension
311
+ + canonical YAML serializer output."""
312
+
313
+ def test_yaml_passport_happy_path(self) -> None:
314
+ """A passport written by any adapter (folder_scan / zotero / obsidian)
315
+ is YAML. /ars-mark-read must read it without crashing."""
316
+ with TemporaryDirectory() as tmp:
317
+ root = Path(tmp)
318
+ passport = root / "passport.yaml"
319
+ _write_passport(passport, citation_keys=["smith2024"])
320
+
321
+ result = run_script(
322
+ SCRIPT, "smith2024", "--passport-path", str(passport),
323
+ "--scope", "full_text",
324
+ )
325
+
326
+ self.assertEqual(result.returncode, 0, msg=f"stderr: {result.stderr}")
327
+ log_data = _read_log(passport)
328
+ self.assertEqual(len(log_data["human_read"]), 1)
329
+ self.assertEqual(
330
+ log_data["human_read"][0]["citation_key"], "smith2024"
331
+ )
332
+
333
+ def test_yaml_passport_invalid_citation_key_hard_errors(self) -> None:
334
+ """Citation-key validation works the same against a YAML passport."""
335
+ with TemporaryDirectory() as tmp:
336
+ root = Path(tmp)
337
+ passport = root / "passport.yaml"
338
+ _write_passport(passport, citation_keys=["smith2024"])
339
+
340
+ result = run_script(
341
+ SCRIPT, "nobody2099", "--passport-path", str(passport)
342
+ )
343
+
344
+ self.assertNotEqual(result.returncode, 0)
345
+ self.assertIn(
346
+ "not in literature_corpus[]", result.stderr + result.stdout
347
+ )
348
+
349
+
350
+ class TestReadLogUnwritableExistingFile(unittest.TestCase):
351
+ """Issue #195 companion P2: parent W_OK check passes but the log file
352
+ itself is unwritable. Must surface canonical fail-fast, not bare
353
+ PermissionError."""
354
+
355
+ def test_existing_unwritable_log_file_fails_fast(self) -> None:
356
+ with TemporaryDirectory() as tmp:
357
+ root = Path(tmp)
358
+ passport = root / "passport.yaml"
359
+ _write_passport(passport, citation_keys=["smith2024"])
360
+ log_path = root / f"{passport.stem}_human_read_log.yaml"
361
+ log_path.write_text("human_read: []\n", encoding="utf-8")
362
+ # Read-only on the existing log file. Parent dir stays writable.
363
+ log_path.chmod(stat.S_IRUSR)
364
+ try:
365
+ result = run_script(
366
+ SCRIPT, "smith2024", "--passport-path", str(passport)
367
+ )
368
+ self.assertNotEqual(
369
+ result.returncode, 0, msg="should fail-fast not succeed"
370
+ )
371
+ combined = result.stderr + result.stdout
372
+ self.assertIn("[ARS-MARK-READ ERROR:", combined)
373
+ # Bare Python traceback is the failure mode we are guarding
374
+ # against. Spec §3.6 firm rule 4 wants a canonical surface.
375
+ self.assertNotIn("Traceback (most recent call last)", combined)
376
+ finally:
377
+ log_path.chmod(stat.S_IRUSR | stat.S_IWUSR)
378
+
379
+
380
+
381
+
382
+ class TestReadScopeAttestation(unittest.TestCase):
383
+ """#513/#738: explicit USER_ATTESTED_READ scope on every new mark."""
384
+
385
+ def _mark(self, tmp, *extra, keys=("smith2024",)):
386
+ root = Path(tmp)
387
+ passport = root / "p.yaml"
388
+ _write_passport(passport, citation_keys=["smith2024", "lee2023"])
389
+ result = run_script(SCRIPT, *keys, "--passport-path", str(passport), *extra)
390
+ return passport, result
391
+
392
+ def test_scope_less_new_mark_is_rejected(self):
393
+ with TemporaryDirectory() as tmp:
394
+ passport, result = self._mark(tmp)
395
+ self.assertNotEqual(result.returncode, 0)
396
+ self.assertIn("--scope is required", result.stderr)
397
+ log_path = passport.parent / f"{passport.stem}_human_read_log.yaml"
398
+ self.assertFalse(log_path.exists())
399
+
400
+ def test_each_level_persisted(self):
401
+ for level in ("full_text", "abstract_only", "toc_only", "unknown"):
402
+ with self.subTest(level=level), TemporaryDirectory() as tmp:
403
+ passport, result = self._mark(tmp, "--scope", level)
404
+ self.assertEqual(result.returncode, 0, result.stderr)
405
+ (entry,) = _read_log(passport)["human_read"]
406
+ self.assertEqual(entry["read_scope"], {"level": level})
407
+
408
+ def test_sections_with_locators_and_note(self):
409
+ with TemporaryDirectory() as tmp:
410
+ passport, result = self._mark(
411
+ tmp, "--scope", "sections", "--locator", "pp. 10-24",
412
+ "--locator", "section 3", "--note", "methods read closely",
413
+ )
414
+ self.assertEqual(result.returncode, 0, result.stderr)
415
+ (entry,) = _read_log(passport)["human_read"]
416
+ self.assertEqual(
417
+ entry["read_scope"],
418
+ {"level": "sections", "locators": ["pp. 10-24", "section 3"],
419
+ "note": "methods read closely"},
420
+ )
421
+
422
+ def test_batch_applies_same_scope_to_every_key(self):
423
+ with TemporaryDirectory() as tmp:
424
+ passport, result = self._mark(
425
+ tmp, "--scope", "full_text", keys=("smith2024", "lee2023"),
426
+ )
427
+ self.assertEqual(result.returncode, 0, result.stderr)
428
+ entries = _read_log(passport)["human_read"]
429
+ self.assertEqual(len(entries), 2)
430
+ for entry in entries:
431
+ self.assertEqual(entry["read_scope"], {"level": "full_text"})
432
+
433
+ def test_invalid_level_rejected_no_write(self):
434
+ with TemporaryDirectory() as tmp:
435
+ passport, result = self._mark(tmp, "--scope", "skimmed")
436
+ self.assertNotEqual(result.returncode, 0)
437
+ log_path = passport.parent / f"{passport.stem}_human_read_log.yaml"
438
+ self.assertFalse(log_path.exists(), "invalid attestation must not write")
439
+
440
+ def test_locator_requires_sections_level(self):
441
+ for level in ("full_text", "abstract_only", "toc_only", "unknown"):
442
+ with self.subTest(level=level), TemporaryDirectory() as tmp:
443
+ passport, result = self._mark(
444
+ tmp, "--scope", level, "--locator", "pp. 1-2",
445
+ )
446
+ self.assertNotEqual(result.returncode, 0)
447
+ self.assertIn("[ARS-MARK-READ ERROR:", result.stderr)
448
+ log_path = passport.parent / f"{passport.stem}_human_read_log.yaml"
449
+ self.assertFalse(log_path.exists())
450
+
451
+ def test_locator_or_note_without_scope_rejected(self):
452
+ for extra in (("--locator", "pp. 1-2"), ("--note", "read it")):
453
+ with self.subTest(extra=extra), TemporaryDirectory() as tmp:
454
+ passport, result = self._mark(tmp, *extra)
455
+ self.assertNotEqual(result.returncode, 0)
456
+ self.assertIn("[ARS-MARK-READ ERROR:", result.stderr)
457
+
458
+ def test_attestation_args_rejected_with_unmark(self):
459
+ with TemporaryDirectory() as tmp:
460
+ root = Path(tmp)
461
+ passport = root / "p.yaml"
462
+ _write_passport(passport, citation_keys=["smith2024"])
463
+ run_script(
464
+ SCRIPT, "smith2024", "--passport-path", str(passport),
465
+ "--scope", "full_text",
466
+ )
467
+ result = run_script(
468
+ SCRIPT, "smith2024", "--passport-path", str(passport),
469
+ "--unmark", "--scope", "full_text",
470
+ )
471
+ self.assertNotEqual(result.returncode, 0)
472
+ self.assertIn("[ARS-MARK-READ ERROR:", result.stderr)
473
+ (entry,) = _read_log(passport)["human_read"]
474
+ self.assertNotIn("rescinded_at", entry, "rejected unmark must not write")
475
+
476
+ def test_legacy_entries_untouched_by_new_scoped_mark(self):
477
+ with TemporaryDirectory() as tmp:
478
+ root = Path(tmp)
479
+ passport = root / "p.yaml"
480
+ _write_passport(passport, citation_keys=["smith2024", "lee2023"])
481
+ legacy_log = {
482
+ "session_id": "legacy",
483
+ "created_at": "2026-07-20T00:00:00Z",
484
+ "human_read": [
485
+ {
486
+ "citation_key": "smith2024",
487
+ "marked_at": "2026-07-20T00:00:00Z",
488
+ }
489
+ ],
490
+ }
491
+ log_path = passport.parent / f"{passport.stem}_human_read_log.yaml"
492
+ log_path.write_text(
493
+ yaml.safe_dump(legacy_log, sort_keys=False), encoding="utf-8"
494
+ )
495
+ result = run_script(
496
+ SCRIPT, "lee2023", "--passport-path", str(passport),
497
+ "--scope", "abstract_only",
498
+ )
499
+ self.assertEqual(result.returncode, 0, result.stderr)
500
+ first, second = _read_log(passport)["human_read"]
501
+ self.assertNotIn("read_scope", first)
502
+ self.assertEqual(second["read_scope"], {"level": "abstract_only"})
503
+
504
+ def test_empty_string_note_is_present_not_absent(self):
505
+ # codex #513 r1: --note "" is an explicitly supplied attestation arg;
506
+ # truthiness checks would let it bypass the requires-scope rule.
507
+ with TemporaryDirectory() as tmp:
508
+ passport, result = self._mark(tmp, "--note", "")
509
+ self.assertNotEqual(result.returncode, 0)
510
+ self.assertIn("[ARS-MARK-READ ERROR:", result.stderr)
511
+
512
+ def test_empty_note_with_unmark_rejected(self):
513
+ with TemporaryDirectory() as tmp:
514
+ root = Path(tmp)
515
+ passport = root / "p.yaml"
516
+ _write_passport(passport, citation_keys=["smith2024"])
517
+ run_script(
518
+ SCRIPT, "smith2024", "--passport-path", str(passport),
519
+ "--scope", "full_text",
520
+ )
521
+ result = run_script(
522
+ SCRIPT, "smith2024", "--passport-path", str(passport),
523
+ "--unmark", "--note", "",
524
+ )
525
+ self.assertNotEqual(result.returncode, 0)
526
+ (entry,) = _read_log(passport)["human_read"]
527
+ self.assertNotIn("rescinded_at", entry)
528
+
529
+ def test_schema_bounds_enforced_at_write_time(self):
530
+ # codex #513 r1: the CLI must never produce a ledger the sidecar schema
531
+ # rejects — empty and oversize locator/note values are refused.
532
+ cases = [
533
+ ("--scope", "sections", "--locator", ""),
534
+ ("--scope", "sections", "--locator", "x" * 201),
535
+ ("--scope", "full_text", "--note", "x" * 1001),
536
+ ]
537
+ for extra in cases:
538
+ with self.subTest(extra=extra[-1][:10] or "(empty)"), TemporaryDirectory() as tmp:
539
+ passport, result = self._mark(tmp, *extra)
540
+ self.assertNotEqual(result.returncode, 0)
541
+ self.assertIn("[ARS-MARK-READ ERROR:", result.stderr)
542
+ log_path = passport.parent / f"{passport.stem}_human_read_log.yaml"
543
+ self.assertFalse(log_path.exists())
544
+
545
+ def test_max_length_boundary_values_accepted(self):
546
+ with TemporaryDirectory() as tmp:
547
+ passport, result = self._mark(
548
+ tmp, "--scope", "sections",
549
+ "--locator", "x" * 200, "--note", "y" * 1000,
550
+ )
551
+ self.assertEqual(result.returncode, 0, result.stderr)
552
+ (entry,) = _read_log(passport)["human_read"]
553
+ self.assertEqual(len(entry["read_scope"]["locators"][0]), 200)
554
+ self.assertEqual(len(entry["read_scope"]["note"]), 1000)
555
+
556
+ def test_schema_rejects_locators_on_non_sections_level(self):
557
+ # codex #513 r2: the sidecar schema mirrors the CLI's locators-require-
558
+ # sections rule so audit-time validation matches the writer contract.
559
+ import json
560
+
561
+ try:
562
+ import jsonschema
563
+ except ImportError:
564
+ self.skipTest("jsonschema not installed")
565
+ schema_path = (
566
+ Path(SCRIPT).resolve().parent.parent
567
+ / "shared" / "contracts" / "passport" / "human_read_log.schema.json"
568
+ )
569
+ schema = json.loads(schema_path.read_text(encoding="utf-8"))
570
+ bad = {
571
+ "session_id": "s", "created_at": "2026-07-20T00:00:00Z",
572
+ "human_read": [{
573
+ "citation_key": "smith2024", "marked_at": "2026-07-20T00:00:00Z",
574
+ "attestation_type": "USER_ATTESTED_READ",
575
+ "read_scope": {"level": "full_text", "locators": ["pp. 1-2"]},
576
+ }],
577
+ }
578
+ with self.assertRaises(jsonschema.ValidationError):
579
+ jsonschema.validate(bad, schema)
580
+ bad["human_read"][0]["read_scope"] = {"level": "sections", "locators": ["pp. 1-2"]}
581
+ jsonschema.validate(bad, schema) # sections+locators stays valid
582
+
583
+ def test_schema_requires_current_type_scope_pair_and_utc_z(self):
584
+ import copy
585
+ import json
586
+
587
+ try:
588
+ import jsonschema
589
+ except ImportError:
590
+ self.skipTest("jsonschema not installed")
591
+ schema_path = (
592
+ Path(SCRIPT).resolve().parent.parent
593
+ / "shared" / "contracts" / "passport" / "human_read_log.schema.json"
594
+ )
595
+ schema = json.loads(schema_path.read_text(encoding="utf-8"))
596
+ valid = {
597
+ "session_id": "s",
598
+ "created_at": "2026-07-20T00:00:00Z",
599
+ "human_read": [
600
+ {
601
+ "citation_key": "smith2024",
602
+ "marked_at": "2026-07-20T00:00:00Z",
603
+ "attestation_type": "USER_ATTESTED_READ",
604
+ "read_scope": {"level": "full_text"},
605
+ }
606
+ ],
607
+ }
608
+ jsonschema.validate(valid, schema)
609
+ for mutate in ("missing_type", "missing_scope", "naive_mark", "offset_mark"):
610
+ with self.subTest(mutate=mutate):
611
+ bad = copy.deepcopy(valid)
612
+ row = bad["human_read"][0]
613
+ if mutate == "missing_type":
614
+ row.pop("attestation_type")
615
+ elif mutate == "missing_scope":
616
+ row.pop("read_scope")
617
+ elif mutate == "naive_mark":
618
+ row["marked_at"] = "2026-07-20T00:00:00"
619
+ else:
620
+ row["marked_at"] = "2026-07-20T00:00:00+00:00"
621
+ with self.assertRaises(jsonschema.ValidationError):
622
+ jsonschema.validate(bad, schema)
623
+
624
+ def test_ledger_validates_against_sidecar_schema(self):
625
+ import json
626
+
627
+ try:
628
+ import jsonschema
629
+ except ImportError:
630
+ self.skipTest("jsonschema not installed")
631
+ schema_path = (
632
+ Path(SCRIPT).resolve().parent.parent
633
+ / "shared" / "contracts" / "passport" / "human_read_log.schema.json"
634
+ )
635
+ schema = json.loads(schema_path.read_text(encoding="utf-8"))
636
+ with TemporaryDirectory() as tmp:
637
+ passport, result = self._mark(
638
+ tmp, "--scope", "sections", "--locator", "pp. 1-9",
639
+ "--note", "intro only",
640
+ )
641
+ self.assertEqual(result.returncode, 0, result.stderr)
642
+ run_script(SCRIPT, "smith2024", "--passport-path", str(passport), "--unmark")
643
+ jsonschema.validate(_read_log(passport), schema)
644
+
645
+
646
+ class TestExistingLedgerFailClosed(unittest.TestCase):
647
+ """#738: an invalid existing ledger is immutable evidence, not input to repair."""
648
+
649
+ def _assert_rejected_unchanged(
650
+ self, raw: bytes, *, unmark: bool = False
651
+ ) -> None:
652
+ with TemporaryDirectory() as tmp:
653
+ root = Path(tmp)
654
+ passport = root / "passport.yaml"
655
+ _write_passport(passport, citation_keys=["smith2024"])
656
+ log_path = root / "passport_human_read_log.yaml"
657
+ log_path.write_bytes(raw)
658
+ before = log_path.read_bytes()
659
+ args = [
660
+ "smith2024",
661
+ "--passport-path",
662
+ str(passport),
663
+ ]
664
+ if unmark:
665
+ args.append("--unmark")
666
+ else:
667
+ args.extend(("--scope", "full_text"))
668
+
669
+ result = run_script(SCRIPT, *args)
670
+
671
+ self.assertNotEqual(result.returncode, 0)
672
+ combined = result.stderr + result.stdout
673
+ self.assertIn("[ARS-MARK-READ ERROR:", combined)
674
+ self.assertIn("existing read ledger is invalid", combined)
675
+ self.assertNotIn("Traceback (most recent call last)", combined)
676
+ self.assertEqual(
677
+ log_path.read_bytes(),
678
+ before,
679
+ "an invalid ledger must remain byte-for-byte unchanged",
680
+ )
681
+ self.assertEqual(
682
+ list(root.glob(f".{log_path.name}.*.tmp")),
683
+ [],
684
+ "validation failure must happen before a temp write",
685
+ )
686
+
687
+ def test_duplicate_keys_at_each_mapping_depth_are_rejected(self) -> None:
688
+ cases = {
689
+ "root": b"""session_id: first\nsession_id: second\ncreated_at: '2026-08-15T00:00:00Z'\nhuman_read: []\n""",
690
+ "row": b"""session_id: s\ncreated_at: '2026-08-15T00:00:00Z'\nhuman_read:\n - citation_key: smith2024\n citation_key: other2024\n marked_at: '2026-08-15T00:00:01Z'\n""",
691
+ "scope": b"""session_id: s\ncreated_at: '2026-08-15T00:00:00Z'\nhuman_read:\n - citation_key: smith2024\n marked_at: '2026-08-15T00:00:01Z'\n attestation_type: USER_ATTESTED_READ\n read_scope:\n level: full_text\n level: unknown\n""",
692
+ }
693
+ for label, raw in cases.items():
694
+ with self.subTest(label=label):
695
+ self._assert_rejected_unchanged(raw)
696
+
697
+ def test_malformed_or_non_utf8_yaml_is_rejected(self) -> None:
698
+ for label, raw in {
699
+ "malformed_yaml": b"session_id: [unterminated\n",
700
+ "non_utf8": b"session_id: \xff\n",
701
+ }.items():
702
+ with self.subTest(label=label):
703
+ self._assert_rejected_unchanged(raw)
704
+
705
+ def test_closed_root_and_row_contract_is_enforced(self) -> None:
706
+ cases = {
707
+ "missing_root_field": b"""created_at: '2026-08-15T00:00:00Z'\nhuman_read: []\n""",
708
+ "extra_root_field": b"""session_id: s\ncreated_at: '2026-08-15T00:00:00Z'\nhuman_read: []\nagent_guess: true\n""",
709
+ "wrong_rows_type": b"""session_id: s\ncreated_at: '2026-08-15T00:00:00Z'\nhuman_read: {}\n""",
710
+ "extra_row_field": b"""session_id: s\ncreated_at: '2026-08-15T00:00:00Z'\nhuman_read:\n - citation_key: smith2024\n marked_at: '2026-08-15T00:00:01Z'\n verified_read: true\n""",
711
+ }
712
+ for label, raw in cases.items():
713
+ with self.subTest(label=label):
714
+ self._assert_rejected_unchanged(raw)
715
+
716
+ def test_timestamp_scope_and_rescind_invariants_are_enforced(self) -> None:
717
+ cases = {
718
+ "invalid_calendar_time": b"""session_id: s\ncreated_at: '2026-02-30T00:00:00Z'\nhuman_read: []\n""",
719
+ "type_without_scope": b"""session_id: s\ncreated_at: '2026-08-15T00:00:00Z'\nhuman_read:\n - citation_key: smith2024\n marked_at: '2026-08-15T00:00:01Z'\n attestation_type: USER_ATTESTED_READ\n""",
720
+ "locators_outside_sections": b"""session_id: s\ncreated_at: '2026-08-15T00:00:00Z'\nhuman_read:\n - citation_key: smith2024\n marked_at: '2026-08-15T00:00:01Z'\n attestation_type: USER_ATTESTED_READ\n read_scope: {level: full_text, locators: ['p. 1']}\n""",
721
+ "rescind_before_mark": b"""session_id: s\ncreated_at: '2026-08-15T00:00:00Z'\nhuman_read:\n - citation_key: smith2024\n marked_at: '2026-08-15T00:00:02Z'\n rescinded_at: '2026-08-15T00:00:01Z'\n""",
722
+ }
723
+ for label, raw in cases.items():
724
+ with self.subTest(label=label):
725
+ self._assert_rejected_unchanged(raw)
726
+
727
+ def test_invalid_ledger_also_blocks_unmark_without_byte_change(self) -> None:
728
+ self._assert_rejected_unchanged(
729
+ b"""session_id: s\ncreated_at: '2026-08-15T00:00:00Z'\nhuman_read:\n - citation_key: smith2024\n marked_at: '2026-08-15T00:00:01Z'\n unexpected: blocked\n""",
730
+ unmark=True,
731
+ )
732
+
733
+
734
+ class TestLockedLedgerTransaction(unittest.TestCase):
735
+ """Concurrent valid writers serialize the complete ledger transaction."""
736
+
737
+ def test_concurrent_writers_reload_under_lock_without_lost_update(self) -> None:
738
+ with TemporaryDirectory() as tmp:
739
+ root = Path(tmp)
740
+ log_path = root / "passport_human_read_log.yaml"
741
+ ars_mark_read._save_log(
742
+ log_path,
743
+ {
744
+ "session_id": "s",
745
+ "created_at": "2026-08-15T00:00:00Z",
746
+ "human_read": [],
747
+ },
748
+ )
749
+
750
+ real_load = ars_mark_read._load_log
751
+ first_loaded = threading.Event()
752
+ release_first = threading.Event()
753
+ second_loaded = threading.Event()
754
+ call_guard = threading.Lock()
755
+ load_count = 0
756
+ errors: list[Exception] = []
757
+
758
+ def controlled_load(path: Path) -> dict:
759
+ nonlocal load_count
760
+ data = real_load(path)
761
+ with call_guard:
762
+ index = load_count
763
+ load_count += 1
764
+ if index == 0:
765
+ first_loaded.set()
766
+ if not release_first.wait(3):
767
+ raise RuntimeError("test did not release first writer")
768
+ else:
769
+ second_loaded.set()
770
+ return data
771
+
772
+ def write_one(citation_key: str) -> None:
773
+ try:
774
+ ars_mark_read._update_log_locked(
775
+ log_path,
776
+ [citation_key],
777
+ read_scope={"level": "full_text"},
778
+ unmark=False,
779
+ )
780
+ except Exception as exc: # surfaced in the test thread
781
+ errors.append(exc)
782
+
783
+ with patch.object(
784
+ ars_mark_read, "_load_log", side_effect=controlled_load
785
+ ):
786
+ first = threading.Thread(target=write_one, args=("first2026",))
787
+ second = threading.Thread(target=write_one, args=("second2026",))
788
+ first.start()
789
+ self.assertTrue(first_loaded.wait(3))
790
+ second.start()
791
+ second_was_blocked = not second_loaded.wait(0.2)
792
+ release_first.set()
793
+ first.join(3)
794
+ second.join(3)
795
+
796
+ self.assertTrue(second_was_blocked, "second writer bypassed ledger lock")
797
+ self.assertFalse(first.is_alive())
798
+ self.assertFalse(second.is_alive())
799
+ self.assertEqual(errors, [])
800
+ self.assertEqual(
801
+ [row["citation_key"] for row in real_load(log_path)["human_read"]],
802
+ ["first2026", "second2026"],
803
+ )
804
+
805
+ def test_contended_lock_times_out_without_opening_ledger(self) -> None:
806
+ with TemporaryDirectory() as tmp:
807
+ log_path = Path(tmp) / "passport_human_read_log.yaml"
808
+ lock_path = ars_mark_read._ledger_lock_path(log_path)
809
+ lock_fd = os.open(lock_path, os.O_RDWR | os.O_CREAT, 0o600)
810
+ ars_mark_read.fcntl.flock(lock_fd, ars_mark_read.fcntl.LOCK_EX)
811
+ try:
812
+ with self.assertRaisesRegex(
813
+ ars_mark_read.LedgerLockError, "timed out"
814
+ ):
815
+ with ars_mark_read._ledger_lock(
816
+ log_path, timeout_seconds=0.01
817
+ ):
818
+ self.fail("contended lock must not be acquired")
819
+ finally:
820
+ ars_mark_read.fcntl.flock(lock_fd, ars_mark_read.fcntl.LOCK_UN)
821
+ os.close(lock_fd)
822
+
823
+ def test_cli_lock_failure_is_visible_without_traceback(self) -> None:
824
+ with TemporaryDirectory() as tmp:
825
+ passport = Path(tmp) / "passport.yaml"
826
+ _write_passport(passport, citation_keys=["smith2024"])
827
+ stderr = StringIO()
828
+ with patch.object(
829
+ ars_mark_read,
830
+ "_update_log_locked",
831
+ side_effect=ars_mark_read.LedgerLockError(
832
+ "simulated acquisition failure"
833
+ ),
834
+ ), redirect_stderr(stderr):
835
+ result = ars_mark_read.main(
836
+ [
837
+ "smith2024",
838
+ "--passport-path",
839
+ str(passport),
840
+ "--scope",
841
+ "full_text",
842
+ ]
843
+ )
844
+
845
+ self.assertEqual(result, 2)
846
+ self.assertIn("[ARS-MARK-READ ERROR:", stderr.getvalue())
847
+ self.assertIn("ledger lock lifecycle failed", stderr.getvalue())
848
+ self.assertNotIn("Traceback", stderr.getvalue())
849
+ self.assertFalse(ars_mark_read._read_log_path(passport).exists())
850
+
851
+
852
+ class TestAtomicLedgerReplace(unittest.TestCase):
853
+ """The destination remains intact until a same-directory replace succeeds."""
854
+
855
+ @staticmethod
856
+ def _valid_payload() -> dict:
857
+ return {
858
+ "session_id": "s",
859
+ "created_at": "2026-08-15T00:00:00Z",
860
+ "human_read": [],
861
+ }
862
+
863
+ def test_replace_failure_preserves_original_bytes_and_cleans_temp(self) -> None:
864
+ with TemporaryDirectory() as tmp:
865
+ root = Path(tmp)
866
+ log_path = root / "passport_human_read_log.yaml"
867
+ original = b"original ledger bytes\n"
868
+ log_path.write_bytes(original)
869
+
870
+ with patch.object(
871
+ ars_mark_read.os,
872
+ "replace",
873
+ side_effect=OSError("simulated replace failure"),
874
+ ):
875
+ with self.assertRaises(OSError):
876
+ ars_mark_read._save_log(log_path, self._valid_payload())
877
+
878
+ self.assertEqual(log_path.read_bytes(), original)
879
+ self.assertEqual(list(root.glob(f".{log_path.name}.*.tmp")), [])
880
+
881
+ def test_same_directory_temp_replaces_only_after_full_write(self) -> None:
882
+ with TemporaryDirectory() as tmp:
883
+ root = Path(tmp)
884
+ log_path = root / "passport_human_read_log.yaml"
885
+ original = b"original ledger bytes\n"
886
+ log_path.write_bytes(original)
887
+ real_replace = os.replace
888
+ observed: list[tuple[Path, Path]] = []
889
+
890
+ def observe_replace(source, destination) -> None:
891
+ source_path = Path(source)
892
+ destination_path = Path(destination)
893
+ self.assertEqual(source_path.parent, log_path.parent)
894
+ self.assertEqual(destination_path, log_path)
895
+ self.assertEqual(log_path.read_bytes(), original)
896
+ self.assertTrue(source_path.read_bytes())
897
+ observed.append((source_path, destination_path))
898
+ real_replace(source_path, destination_path)
899
+
900
+ with patch.object(
901
+ ars_mark_read.os, "replace", side_effect=observe_replace
902
+ ):
903
+ ars_mark_read._save_log(log_path, self._valid_payload())
904
+
905
+ self.assertEqual(len(observed), 1)
906
+ self.assertEqual(yaml.safe_load(log_path.read_text()), self._valid_payload())
907
+ self.assertEqual(list(root.glob(f".{log_path.name}.*.tmp")), [])
908
+
909
+ if __name__ == "__main__":
910
+ unittest.main()