psyclaw 0.27.22 → 0.28.0

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1048) hide show
  1. package/README.md +11 -5
  2. package/dist/apps/panel/index.html +2 -2
  3. package/dist/src/adapters/pi/extension.js +225 -92
  4. package/dist/src/adapters/pi/extension.js.map +1 -1
  5. package/dist/src/agents/import.js +44 -32
  6. package/dist/src/agents/import.js.map +1 -1
  7. package/dist/src/analysis/hooks.d.ts +1 -0
  8. package/dist/src/analysis/hooks.js +20 -1
  9. package/dist/src/analysis/hooks.js.map +1 -1
  10. package/dist/src/ars/bridge.d.ts +20 -0
  11. package/dist/src/ars/bridge.js +132 -0
  12. package/dist/src/ars/bridge.js.map +1 -0
  13. package/dist/src/ars/contracts.d.ts +55 -0
  14. package/dist/src/ars/contracts.js +2 -0
  15. package/dist/src/ars/contracts.js.map +1 -0
  16. package/dist/src/ars/panel-plan.d.ts +4 -0
  17. package/dist/src/ars/panel-plan.js +11 -0
  18. package/dist/src/ars/panel-plan.js.map +1 -0
  19. package/dist/src/ars/pi-panel-executor.d.ts +30 -0
  20. package/dist/src/ars/pi-panel-executor.js +140 -0
  21. package/dist/src/ars/pi-panel-executor.js.map +1 -0
  22. package/dist/src/ars/profile.d.ts +36 -0
  23. package/dist/src/ars/profile.js +119 -0
  24. package/dist/src/ars/profile.js.map +1 -0
  25. package/dist/src/ars/re-review.d.ts +22 -0
  26. package/dist/src/ars/re-review.js +172 -0
  27. package/dist/src/ars/re-review.js.map +1 -0
  28. package/dist/src/branding.d.ts +2 -4
  29. package/dist/src/branding.js +3 -5
  30. package/dist/src/branding.js.map +1 -1
  31. package/dist/src/bundled-tools.d.ts +3 -0
  32. package/dist/src/bundled-tools.js +21 -0
  33. package/dist/src/bundled-tools.js.map +1 -0
  34. package/dist/src/chat.js +6 -5
  35. package/dist/src/chat.js.map +1 -1
  36. package/dist/src/creation/contracts.d.ts +38 -0
  37. package/dist/src/creation/contracts.js +2 -0
  38. package/dist/src/creation/contracts.js.map +1 -0
  39. package/dist/src/creation/service.d.ts +7 -0
  40. package/dist/src/creation/service.js +196 -0
  41. package/dist/src/creation/service.js.map +1 -0
  42. package/dist/src/index.d.ts +10 -0
  43. package/dist/src/index.js +10 -0
  44. package/dist/src/index.js.map +1 -1
  45. package/dist/src/install/installer.js +32 -10
  46. package/dist/src/install/installer.js.map +1 -1
  47. package/dist/src/orchestration/personas.d.ts +15 -0
  48. package/dist/src/orchestration/personas.js +51 -0
  49. package/dist/src/orchestration/personas.js.map +1 -0
  50. package/dist/src/orchestration/pi-executor.d.ts +1 -0
  51. package/dist/src/orchestration/pi-executor.js +1 -1
  52. package/dist/src/orchestration/pi-executor.js.map +1 -1
  53. package/dist/src/panel/extension.js +29 -8
  54. package/dist/src/panel/extension.js.map +1 -1
  55. package/dist/src/panel/server.js +14 -5
  56. package/dist/src/panel/server.js.map +1 -1
  57. package/dist/src/project/paths.d.ts +3 -0
  58. package/dist/src/project/paths.js +7 -0
  59. package/dist/src/project/paths.js.map +1 -1
  60. package/dist/src/rules/user-rules.d.ts +8 -0
  61. package/dist/src/rules/user-rules.js +36 -0
  62. package/dist/src/rules/user-rules.js.map +1 -0
  63. package/dist/src/skills/contracts.d.ts +4 -4
  64. package/dist/src/skills/recommended.js +1 -1
  65. package/dist/src/skills/registry.js +49 -28
  66. package/dist/src/skills/registry.js.map +1 -1
  67. package/dist/src/style/cli-ui.js +0 -1
  68. package/dist/src/style/cli-ui.js.map +1 -1
  69. package/package.json +14 -3
  70. package/scripts/rebrand-pi.mjs +6 -0
  71. package/skills/recommended/catalog.json +2 -11
  72. package/vendor/ars/.claude/CLAUDE.md +371 -0
  73. package/vendor/ars/.command-invariants.toml +24 -0
  74. package/vendor/ars/CITATION.cff +35 -0
  75. package/vendor/ars/LICENSE +417 -0
  76. package/vendor/ars/MODE_REGISTRY.md +76 -0
  77. package/vendor/ars/NOTICE.md +26 -0
  78. package/vendor/ars/POSITIONING.md +99 -0
  79. package/vendor/ars/PSYCLAW_SOURCE.json +10 -0
  80. package/vendor/ars/README.md +751 -0
  81. package/vendor/ars/SECURITY.md +52 -0
  82. package/vendor/ars/THIRD_PARTY.md +70 -0
  83. package/vendor/ars/academic-paper/SKILL.md +542 -0
  84. package/vendor/ars/academic-paper/agents/abstract_bilingual_agent.md +171 -0
  85. package/vendor/ars/academic-paper/agents/argument_builder_agent.md +276 -0
  86. package/vendor/ars/academic-paper/agents/citation_compliance_agent.md +422 -0
  87. package/vendor/ars/academic-paper/agents/draft_writer_agent.md +656 -0
  88. package/vendor/ars/academic-paper/agents/formatter_agent.md +999 -0
  89. package/vendor/ars/academic-paper/agents/intake_agent.md +393 -0
  90. package/vendor/ars/academic-paper/agents/literature_strategist_agent.md +626 -0
  91. package/vendor/ars/academic-paper/agents/peer_reviewer_agent.md +516 -0
  92. package/vendor/ars/academic-paper/agents/revision_coach_agent.md +334 -0
  93. package/vendor/ars/academic-paper/agents/socratic_mentor_agent.md +527 -0
  94. package/vendor/ars/academic-paper/agents/structure_architect_agent.md +401 -0
  95. package/vendor/ars/academic-paper/agents/visualization_agent.md +441 -0
  96. package/vendor/ars/academic-paper/examples/chinese_paper_example.md +278 -0
  97. package/vendor/ars/academic-paper/examples/clinical_citation_verification_checklist.md +95 -0
  98. package/vendor/ars/academic-paper/examples/clinical_epistemic_status_example.md +100 -0
  99. package/vendor/ars/academic-paper/examples/commitment_ledger_example.md +147 -0
  100. package/vendor/ars/academic-paper/examples/imrad_hei_example.md +234 -0
  101. package/vendor/ars/academic-paper/examples/literature_review_example.md +260 -0
  102. package/vendor/ars/academic-paper/examples/plan_mode_guided_writing.md +600 -0
  103. package/vendor/ars/academic-paper/examples/revision_mode_example.md +344 -0
  104. package/vendor/ars/academic-paper/examples/revision_recovery_example.md +506 -0
  105. package/vendor/ars/academic-paper/examples/version_family_reconciliation_example.md +89 -0
  106. package/vendor/ars/academic-paper/references/abstract_writing_guide.md +169 -0
  107. package/vendor/ars/academic-paper/references/academic_writing_style.md +188 -0
  108. package/vendor/ars/academic-paper/references/anti_leakage_protocol.md +83 -0
  109. package/vendor/ars/academic-paper/references/apa7_chinese_citation_guide.md +364 -0
  110. package/vendor/ars/academic-paper/references/apa7_extended_guide.md +198 -0
  111. package/vendor/ars/academic-paper/references/changelog.md +11 -0
  112. package/vendor/ars/academic-paper/references/citation_format_switcher.md +228 -0
  113. package/vendor/ars/academic-paper/references/committee_correspondence_protocol.md +158 -0
  114. package/vendor/ars/academic-paper/references/credit_authorship_guide.md +308 -0
  115. package/vendor/ars/academic-paper/references/disclosure_mode_protocol.md +478 -0
  116. package/vendor/ars/academic-paper/references/domain_evidence_profiles.md +38 -0
  117. package/vendor/ars/academic-paper/references/failure_paths.md +349 -0
  118. package/vendor/ars/academic-paper/references/funding_statement_guide.md +319 -0
  119. package/vendor/ars/academic-paper/references/hei_domain_glossary.md +169 -0
  120. package/vendor/ars/academic-paper/references/intro_title_rhetoric_guide.md +114 -0
  121. package/vendor/ars/academic-paper/references/journal_submission_guide.md +249 -0
  122. package/vendor/ars/academic-paper/references/latex_template_reference.md +378 -0
  123. package/vendor/ars/academic-paper/references/mode_selection_guide.md +378 -0
  124. package/vendor/ars/academic-paper/references/paper_structure_patterns.md +330 -0
  125. package/vendor/ars/academic-paper/references/plan_mode_protocol.md +112 -0
  126. package/vendor/ars/academic-paper/references/policy_anchor_disclosure_protocol.md +200 -0
  127. package/vendor/ars/academic-paper/references/policy_anchor_table.md +157 -0
  128. package/vendor/ars/academic-paper/references/revision_patch_protocol.md +173 -0
  129. package/vendor/ars/academic-paper/references/statistical_visualization_standards.md +750 -0
  130. package/vendor/ars/academic-paper/references/venue_disclosure_policies.md +259 -0
  131. package/vendor/ars/academic-paper/references/vlm_figure_verification.md +126 -0
  132. package/vendor/ars/academic-paper/references/workflow_phase_details.md +135 -0
  133. package/vendor/ars/academic-paper/references/writing_judgment_framework.md +59 -0
  134. package/vendor/ars/academic-paper/references/writing_quality_check.md +173 -0
  135. package/vendor/ars/academic-paper/templates/bilingual_abstract_template.md +78 -0
  136. package/vendor/ars/academic-paper/templates/case_study_template.md +129 -0
  137. package/vendor/ars/academic-paper/templates/conference_paper_template.md +108 -0
  138. package/vendor/ars/academic-paper/templates/credit_statement_template.md +132 -0
  139. package/vendor/ars/academic-paper/templates/funding_statement_template.md +290 -0
  140. package/vendor/ars/academic-paper/templates/imrad_template.md +183 -0
  141. package/vendor/ars/academic-paper/templates/latex_article_template.tex +199 -0
  142. package/vendor/ars/academic-paper/templates/literature_review_template.md +135 -0
  143. package/vendor/ars/academic-paper/templates/policy_brief_template.md +139 -0
  144. package/vendor/ars/academic-paper/templates/revision_tracking_template.md +199 -0
  145. package/vendor/ars/academic-paper/templates/theoretical_paper_template.md +119 -0
  146. package/vendor/ars/academic-paper-reviewer/SKILL.md +491 -0
  147. package/vendor/ars/academic-paper-reviewer/agents/devils_advocate_reviewer_agent.md +443 -0
  148. package/vendor/ars/academic-paper-reviewer/agents/domain_reviewer_agent.md +412 -0
  149. package/vendor/ars/academic-paper-reviewer/agents/editorial_synthesizer_agent.md +478 -0
  150. package/vendor/ars/academic-paper-reviewer/agents/eic_agent.md +339 -0
  151. package/vendor/ars/academic-paper-reviewer/agents/field_analyst_agent.md +221 -0
  152. package/vendor/ars/academic-paper-reviewer/agents/methodology_reviewer_agent.md +449 -0
  153. package/vendor/ars/academic-paper-reviewer/agents/perspective_reviewer_agent.md +427 -0
  154. package/vendor/ars/academic-paper-reviewer/examples/hei_paper_review_example.md +391 -0
  155. package/vendor/ars/academic-paper-reviewer/examples/interdisciplinary_review_example.md +299 -0
  156. package/vendor/ars/academic-paper-reviewer/examples/subclaim_decomposition_example.md +80 -0
  157. package/vendor/ars/academic-paper-reviewer/references/calibration_mode_protocol.md +256 -0
  158. package/vendor/ars/academic-paper-reviewer/references/changelog.md +10 -0
  159. package/vendor/ars/academic-paper-reviewer/references/editorial_decision_standards.md +236 -0
  160. package/vendor/ars/academic-paper-reviewer/references/guided_mode_protocol.md +34 -0
  161. package/vendor/ars/academic-paper-reviewer/references/integration_guide.md +15 -0
  162. package/vendor/ars/academic-paper-reviewer/references/quality_rubrics.md +84 -0
  163. package/vendor/ars/academic-paper-reviewer/references/re_review_mode_protocol.md +340 -0
  164. package/vendor/ars/academic-paper-reviewer/references/review_criteria_framework.md +98 -0
  165. package/vendor/ars/academic-paper-reviewer/references/review_panel_provenance_protocol.md +197 -0
  166. package/vendor/ars/academic-paper-reviewer/references/review_quality_thinking.md +58 -0
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  169. package/vendor/ars/academic-paper-reviewer/references/statistical_reporting_standards.md +505 -0
  170. package/vendor/ars/academic-paper-reviewer/references/top_journals_by_field.md +206 -0
  171. package/vendor/ars/academic-paper-reviewer/templates/editorial_decision_template.md +235 -0
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  175. package/vendor/ars/academic-pipeline/agents/claim_ref_alignment_audit_agent.md +382 -0
  176. package/vendor/ars/academic-pipeline/agents/collaboration_depth_agent.md +164 -0
  177. package/vendor/ars/academic-pipeline/agents/integrity_verification_agent.md +870 -0
  178. package/vendor/ars/academic-pipeline/agents/pipeline_orchestrator_agent.md +1379 -0
  179. package/vendor/ars/academic-pipeline/agents/state_tracker_agent.md +622 -0
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  181. package/vendor/ars/academic-pipeline/examples/integrity_failure_recovery.md +389 -0
  182. package/vendor/ars/academic-pipeline/examples/mid_entry_example.md +414 -0
  183. package/vendor/ars/academic-pipeline/references/adapters/.gitkeep +0 -0
  184. package/vendor/ars/academic-pipeline/references/adapters/overview.md +153 -0
  185. package/vendor/ars/academic-pipeline/references/ai_research_failure_modes.md +185 -0
  186. package/vendor/ars/academic-pipeline/references/changelog.md +14 -0
  187. package/vendor/ars/academic-pipeline/references/claim_audit_calibration_protocol.md +175 -0
  188. package/vendor/ars/academic-pipeline/references/claim_verification_protocol.md +282 -0
  189. package/vendor/ars/academic-pipeline/references/external_review_protocol.md +131 -0
  190. package/vendor/ars/academic-pipeline/references/integrity_review_protocol.md +110 -0
  191. package/vendor/ars/academic-pipeline/references/literature_corpus_consumers.md +193 -0
  192. package/vendor/ars/academic-pipeline/references/mode_advisor.md +135 -0
  193. package/vendor/ars/academic-pipeline/references/passport_as_reset_boundary.md +132 -0
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  204. package/vendor/ars/agents/report_compiler_agent.md +341 -0
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  207. package/vendor/ars/commands/ars-3w.md +10 -0
  208. package/vendor/ars/commands/ars-abstract.md +10 -0
  209. package/vendor/ars/commands/ars-cache-invalidate.md +20 -0
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  213. package/vendor/ars/commands/ars-full.md +9 -0
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@@ -0,0 +1,274 @@
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+ # Human-Subjects Authority Selection and Resolution Protocol (#666)
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+
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+ This protocol governs exact authority selection and deterministic applicability
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+ tracing. It is not a committee, legal opinion, authorization, compliance result,
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+ submission-readiness result, or review-pathway result.
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+
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+ Canonical artifacts:
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+
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+ - `shared/contracts/human_subjects/irb_context_record.schema.json`
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+ - `shared/contracts/human_subjects/authority_profile_registry.schema.json`
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+ - `shared/contracts/human_subjects/resolved_authority_context.schema.json`
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+ - `shared/human_subjects_authority_registry.json`
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+ - `scripts/resolve_human_subjects_authority.py`
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+ - `docs/design/2026-08-09-666-human-subjects-authority-contract-spec.md`
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+
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+ The schemas are authoritative for field names and local shape. This protocol
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+ governs cross-artifact use.
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+
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+ ## Two axes and bounded profiles
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+
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+ V1 has exactly two axes: `review_ethics` and `data_protection`. A study may select
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+ multiple profiles on either axis. Funder and institutional requirements are
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+ overlays, never axes.
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+
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+ Every shipped profile carries `coverage_status=bounded_subset` and
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+ `no_completeness_claim=true`:
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+
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+ - `us.hhs.45-cfr-46.subpart-a`
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+ - `tw.mohw.human-subjects-research-act`
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+ - `eu.gdpr.research-core-bounded`
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+
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+ Profiles contain curator summaries and primary-source links, not a claim of
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+ complete law or legal advice. Do not vendor unlicensed normative text.
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+
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+ ## Author declaration
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+
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+ The context record uses:
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+
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+ - `context_record_id`
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+ - `confirmed_by=author`
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+ - `confirmed_at`
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+ - `applicability_as_of`
43
+ - `scope_dimensions`
44
+ - typed `declared_facts`
45
+ - `profile_selection_state` and exact `selected_profiles`
46
+ - `overlay_selection_state` and exact `selected_overlays`
47
+ - `display_precedence`
48
+
49
+ Do not infer any of these from locale, language, affiliation, filenames,
50
+ manuscript text, or model memory.
51
+
52
+ Each selected profile pins axis, id, version, digest, and authority scope ids.
53
+ Each selected overlay pins kind, axis, id, version, and digest. Unknown or
54
+ mismatched pointers fail; never choose a latest version automatically.
55
+
56
+ An empty scope-dimension list is unknown, not confirmed absence. A missing fact or
57
+ a fact with `state=unknown` and `value=null` is `unknown`, never false.
58
+ `overlay_selection_state=not_provided` is distinct from
59
+ `none_declared_by_author`.
60
+
61
+ ## Predicate evaluation
62
+
63
+ Registry predicates are a closed recursive AST with only:
64
+
65
+ - `fact_equals`
66
+ - `fact_in`
67
+ - `fact_contains`
68
+ - `all`
69
+ - `any`
70
+ - `not`
71
+
72
+ Facts must resolve through `fact_definitions`, and declared value types must agree
73
+ with the catalogue. Do not execute string expressions or add profile-specific
74
+ branches.
75
+
76
+ `fact_equals` and `fact_in` accept scalar boolean, string, string-enum, or date
77
+ facts only, and every date operand must be a real ISO 8601 calendar date.
78
+ `fact_contains` means exact membership in a `string_set`; it never performs
79
+ substring matching on a string. V1 has no string-set equality operator.
80
+
81
+ Use Strong Kleene logic:
82
+
83
+ - missing or unknown fact leaf → `unknown`;
84
+ - `all`: false if any false, true if all true, otherwise unknown;
85
+ - `any`: true if any true, false if all false, otherwise unknown;
86
+ - `not(true)=false`, `not(false)=true`, `not(unknown)=unknown`.
87
+
88
+ A selected profile whose predicate is false emits `PROFILE_SCOPE_CONFLICT`; an
89
+ unknown predicate emits `APPLICABILITY_UNRESOLVED`. Both block the downstream
90
+ gate, and the resolver does not assert legal non-applicability.
91
+ Requirement predicate results remain `true | false | unknown` and never become a
92
+ compliance conclusion.
93
+
94
+ ## Authority provenance
95
+
96
+ Source records separately record `canonical_url`, `snapshot_url`,
97
+ `provision_locator`, closed `allowed_provisions`, `effective_from`, `effective_until`,
98
+ `source_amended_or_published_date`, `retrieved_at`, `verified_at`,
99
+ `source_language`, `controlling_language`, `authenticity_status`,
100
+ `content_digest`, `digest_scope`, `rights_status`, and `freshness`. Row-local
101
+ `authority_anchor` records use their schema-defined counterparts, including
102
+ `authority_url`, `provision`, and `effective_date`.
103
+
104
+ The anchor source must occur in its profile or overlay `source_ids`; its
105
+ `provision` must occur in that source's `allowed_provisions`; and its
106
+ `effective_date` must equal the source's provision-specific `effective_from`.
107
+
108
+ Never infer an effective date from an amendment date. For Taiwan, the page's
109
+ amendment date belongs in `source_amended_or_published_date`; it is not, without a
110
+ separate controlling-authority basis, the profile's `effective_from` or a
111
+ requirement's `effective_date`. Keep the controlling Chinese source distinct from
112
+ the official English reference translation.
113
+
114
+ Future-effective, expired, stale, unverified, superseded, or
115
+ non-controlling-translation-only authority produces
116
+ `AUTHORITY_SOURCE_NOT_CURRENT`. Runtime resolution is offline; it never refreshes
117
+ these records from the network.
118
+
119
+ ## Requirements and overlays
120
+
121
+ Every requirement identifies its axis, obligated actor, consumer scopes,
122
+ applicability AST, structured expectations, expected evidence and holder,
123
+ waiver/exception route, authoritative decision maker, collision metadata, and
124
+ full authority anchor.
125
+
126
+ Consumers must respect `obligated_actor` and `consumer_scopes`. Committee
127
+ composition evidence held by an IRB is not an investigator packet requirement.
128
+ A profiled exception route records only that a route exists; it never means the
129
+ route was applicable, requested, or granted.
130
+
131
+ Overlays use exact `target_profiles` id/version/digest pointers. Their operation is
132
+ `add`, `supplement`, or `conflict`, and `requirements_removed` is always false.
133
+ They cannot replace a base profile, delete a base row, fill an unresolved axis, or
134
+ introduce a funder axis.
135
+
136
+ Every target profile must be selected exactly. An overlay inherits the Strong
137
+ Kleene `all` of all target-profile applicability results; each overlay requirement
138
+ combines that inherited result with its own predicate using Strong Kleene `all`.
139
+ If any target is false or unknown, emit `OVERLAY_BASE_UNRESOLVED`, preserve that
140
+ tri-state result on the overlay requirements, and keep the downstream gate closed.
141
+
142
+ ## Display-only precedence and collisions
143
+
144
+ `display_precedence` and resolved `trace_order` are presentation order only.
145
+ Every precedence entry says `display_only_no_suppression`.
146
+
147
+ Changing display order must not change selected authorities, predicate results,
148
+ unresolved reasons, downstream gates, collision membership, or requirement
149
+ accounting. Every requirement result appears exactly once in `trace_order`.
150
+
151
+ Requirements sharing a collision key remain parallel with
152
+ `parallel_authorities_require_human_resolution` and
153
+ `requirements_removed=false`. Never average or deduplicate different
154
+ jurisdictions or the two independent axes.
155
+
156
+ ## Resolver procedure
157
+
158
+ 1. Read only the explicitly supplied context and registry JSON files.
159
+ 2. Reject duplicate JSON keys, non-finite values, and unknown fields.
160
+ 3. Validate the context and registry schemas.
161
+ 4. Recompute and match every selected profile/overlay id, version, and digest.
162
+ 5. Resolve authority scopes and exact overlay targets without fallback.
163
+ 6. Require selected base profiles on both axes.
164
+ 7. Validate source interval, freshness, language, authenticity, digest, and rights
165
+ metadata at `applicability_as_of`.
166
+ 8. Evaluate every profile and requirement AST using Strong Kleene logic.
167
+ 9. Account for every selected requirement exactly once.
168
+ 10. Preserve all collisions and build display-only `trace_order`.
169
+ 11. Emit the pointer-only resolved artifact and canonical digests; compute
170
+ `resolved_digest` with its own field excluded.
171
+
172
+ The resolver does not read manuscripts, scan sibling files, access the network,
173
+ judge prose, decide legal applicability, or render a user-facing brief.
174
+
175
+ ## Pointer-only result and gate
176
+
177
+ The resolved artifact carries a `context_pointer` and `registry_pointer`; it does
178
+ not embed either input. Profile, overlay, requirement, and authority-anchor data
179
+ are represented through schema-defined pointers and digests.
180
+
181
+ Its states are `resolved`, `jurisdiction_unresolved`, and
182
+ `applicability_unresolved`. Its closed unresolved codes are:
183
+
184
+ - `JURISDICTION_UNRESOLVED`
185
+ - `APPLICABILITY_UNRESOLVED`
186
+ - `OVERLAY_BASE_UNRESOLVED`
187
+ - `AUTHORITY_SOURCE_NOT_CURRENT`
188
+ - `PROFILE_SCOPE_CONFLICT`
189
+
190
+ Each unresolved reason contains exactly `code`, `axis`, nullable `authority_id`,
191
+ and nullable `requirement_id`. It contains no prose or free-text detail. A
192
+ requirement-level reason identifies its requirement; profile-, overlay-, and
193
+ missing-axis reasons use `requirement_id=null`.
194
+
195
+ The downstream gate contains exactly:
196
+
197
+ ```json
198
+ {
199
+ "both_axes_selected": true,
200
+ "exact_selection_resolved": true,
201
+ "all_applicability_resolved": true,
202
+ "profile_dependent_result_allowed": true
203
+ }
204
+ ```
205
+
206
+ Only `resolution_state=resolved` may set all four true. A resolved result contains
207
+ at least one selected profile on each axis, every selected profile has
208
+ `applicability=true` and `source_state=current`, and no requirement applicability
209
+ is unknown. Either unresolved state requires an unresolved reason and forces
210
+ `profile_dependent_result_allowed=false`. A profile or overlay on one axis never
211
+ cures a missing base profile on the other.
212
+
213
+ Before consuming a serialized result, call
214
+ `validate_resolved_context(result, context, registry)`. It validates the bound
215
+ inputs, deterministically replays resolution, recomputes `resolved_digest` with
216
+ that field excluded, and requires exact object equality. The replay checker—not
217
+ JSON Schema alone—owns semantic uniqueness across rows, JSON Pointer resolution,
218
+ digest-to-input binding, and gate derivation.
219
+
220
+ ## Consumer boundary
221
+
222
+ - #667 consumes a serialized authority result only after
223
+ `validate_resolved_context(result, context, registry)` succeeds and the
224
+ profile-dependent gate is open. It filters to `submission_packet`, preserves
225
+ exact requirement and authority-anchor pointers, and then uses only the
226
+ closed `evidence_expected` fields `evidence_id`, `held_by`, and
227
+ `artifact_type` for status derivation. It never interprets, evaluates, or copies
228
+ `structured_expectations` or an evidence description; exact whole-row bytes are
229
+ canonical-hashed only for replay integrity. Content-coverage questions belong
230
+ to #681.
231
+ - #681 consumes authority rows only through a #667 manifest that has first been
232
+ replay-validated against this same context/registry/resolved triplet and its
233
+ exact packet inventory/root. It may then dereference exact
234
+ `structured_expectations[]` pointers and join separately session-held content
235
+ through `shared/references/authority_content_coverage_advisory_protocol.md`.
236
+ Its carrier is always `LLM-ADVISORY` and `UNMEASURED`; it cannot alter
237
+ applicability, deterministic packet status, readiness, caller authorization,
238
+ institutional acceptance, or any authority pointer/digest.
239
+ - #668 remains valid in `artifact_agnostic` mode and no profile may rewrite its
240
+ source correspondence or committee authority.
241
+ - #669 consumes every selected-profile requirement scoped to `pathway_trace`
242
+ only after exact #666 replay, then projects exact fact occurrences,
243
+ authoritative-decision-maker role ids, and authority anchors under
244
+ `shared/references/review_pathway_rule_trace_protocol.md`. Its caller-owned
245
+ candidate names and ordering are display-only; the trace never determines,
246
+ predicts, ranks, approves, clears, exempts, authorizes, or gates. A missing
247
+ profile preserves `JURISDICTION_UNRESOLVED`. The protocol's narrow display of
248
+ requirement-level unknown predicates does not open or alter this resolver's
249
+ `profile_dependent_result_allowed` gate.
250
+ - #680 owns correction and migration of mixed-jurisdiction reference prose.
251
+
252
+ #666 itself changes no user-facing output. It emits no verdict, pathway,
253
+ readiness, authorization, conformance result, or timeline. The #665 independent
254
+ status grammar and fixed non-authorization footer remain unchanged.
255
+
256
+ ## #667 capability-envelope facts
257
+
258
+ The registry also catalogs seven author-declared booleans used only to decide
259
+ whether the deterministic submission-packet checker is within its V1 technical
260
+ capability envelope:
261
+
262
+ - `packet_v1.non_clinical=true`
263
+ - `packet_v1.single_institution=true`
264
+ - `packet_v1.competent_adults_only=true`
265
+ - `packet_v1.biospecimens_involved=false`
266
+ - `packet_v1.regulated_clinical_trial=false`
267
+ - `packet_v1.cross_border_material_transfer=false`
268
+ - `packet_v1.multisite_reliance=false`
269
+
270
+ These facts are not legal characterizations and cannot select an authority,
271
+ satisfy an axis, or change a profile or requirement digest. A missing, unknown,
272
+ or non-matching value makes #667 return `APPLICABILITY_UNRESOLVED`; it never
273
+ means that an authority is legally inapplicable. The complete #667 contract is
274
+ `shared/references/submission_packet_manifest_protocol.md`.
@@ -0,0 +1,168 @@
1
+ # Intent Clarification Protocol (v3.9.2)
2
+
3
+ **Spec:** v3.9.2 hot-fix per `docs/design/2026-05-18-ars-v3.9.2-phase-boundary-spec.md`
4
+ **Issue:** #133 (phase scope inflation hot-fix)
5
+ **Forward note:** v3.10 active conductor (#134) will replace this clarification gate with structured intake + task envelope dispatch. v3.9.2 ships clarification-only as interim.
6
+
7
+ ## Purpose
8
+
9
+ When ARS receives input that does not unambiguously identify the intended workflow, the main session **clarifies before dispatching any agent**. Auto-routing to a single-phase agent on cross-phase materials caused #133 (silent scope inflation).
10
+
11
+ This protocol defines:
12
+
13
+ 1. When clarification fires (3 trigger classes)
14
+ 2. How the clarification message is structured (a-d options in markdown body, NOT AskUserQuestion tool)
15
+ 3. How the `[direct-mode]` escape hatch works
16
+ 4. Worked examples
17
+
18
+ ## Trigger condition table
19
+
20
+ | Condition | Routing class | Action |
21
+ |---|---|---|
22
+ | User invokes `/ars-*` slash command | Explicit | Route directly to named skill; no clarification |
23
+ | User uses unambiguous trigger keyword (e.g., "lit-review this", "review my paper") | Explicit | Route directly to matching skill; no clarification |
24
+ | User provides materials spanning ≥ 2 pipeline phases (e.g., abstract + literature, draft + reviewer comments + bibliography) | Cross-phase ambiguous | **Clarify** with a-d options |
25
+ | User provides no materials and no clear request | No materials ambiguous | **Clarify** with a-d options |
26
+ | User's first message begins with `[direct-mode]` (byte-0, case-insensitive) | Escape hatch | Strip prefix, skip clarification, route to whatever single agent matches the literal trigger; if no match, fall back to Explicit handling on the stripped message |
27
+
28
+ ## Pipeline phase reference (for "cross-phase materials" detection)
29
+
30
+ | Phase | Typical artifact | File markers (heuristic) |
31
+ |---|---|---|
32
+ | 1 — Scoping | Research Question Brief, Methodology Blueprint | `phase1_*/` directory; `rq_brief.md`; `methodology.md` |
33
+ | 2 — Investigation | Annotated Bibliography, source list, literature_corpus passport entries | `phase2_*/`; `annotated_bib.md`; `literature.{yaml,json}`; `references.bib`; folders of PDFs |
34
+ | 3 — Analysis / Synthesis | Synthesis Report, claim-evidence mapping | `phase3_*/`; `synthesis.md` |
35
+ | 4 — Composition | Full draft, abstract, report body | `phase4_*/`; `draft.md`; `abstract.md` (or 5b for academic-paper) |
36
+ | 5 — Review | Editorial decision letter, reviewer comments, ethics report | `phase5_*/`; `review_*.md`; `editorial_decision.md` |
37
+ | 6 — Revision | Revision Roadmap, R&R response letter, revised draft | `phase6_*/`; `revision_roadmap.md`; `response_letter.md` |
38
+ | 0 / 7 / Plan | Intake config, format conversion, Socratic plan | `phase0_*/`; `phase7_*/`; Plan mode mid-conversation |
39
+
40
+ "Cross-phase" = the user-provided materials, taken together, would correspond to artifacts from ≥ 2 of these phases. Examples:
41
+
42
+ - Abstract + literature = Phase 4 + Phase 2 → cross-phase, clarify
43
+ - Draft + reviewer comments = Phase 4 + Phase 5 → cross-phase, clarify
44
+ - Literature only = Phase 2 → single-phase, no clarification needed
45
+ - Reviewer comments only = Phase 5 → single-phase, no clarification needed
46
+
47
+ ## Clarification message template
48
+
49
+ When clarification fires, the main session emits a message in this shape (markdown body, multi-select a-d format per `feedback_telegram_conversation_style.md` discipline):
50
+
51
+ ```markdown
52
+ I see you've provided <summary of materials>. To route correctly, could you confirm which workflow you want?
53
+
54
+ (a) **Full pipeline** — go from materials through to a complete deliverable (research + write + review + revise). Use `academic-pipeline` orchestrator (`/ars-full`).
55
+ (b) **<phase-specific workflow 1>** — <one-line description>. Use `<skill>` (`/ars-<mode>`).
56
+ (c) **<phase-specific workflow 2>** — <one-line description>. Use `<skill>` (`/ars-<mode>`).
57
+ (d) **Something else** — let me know what you're trying to do.
58
+
59
+ Pick a-d, or describe the target deliverable. If you want me to dispatch a specific agent directly without this clarification, prefix your message with `[direct-mode]`.
60
+ ```
61
+
62
+ **Discipline rules:**
63
+
64
+ - 3-4 candidate options + open "something else"; never more than 4 (avoid choice paralysis)
65
+ - Each option names the destination skill / command so the user sees what gets invoked
66
+ - Last sentence mentions `[direct-mode]` so the user knows the escape hatch exists
67
+ - Do NOT call `AskUserQuestion` tool — options live in the markdown body of the chat response (per `feedback_no_askuserquestion_use_brainstorm.md`)
68
+
69
+ ## `[direct-mode]` escape hatch
70
+
71
+ **Behavior:**
72
+
73
+ - **Position:** Token must be the first non-whitespace token of the user's first message. Leading whitespace (spaces, tabs, newlines) is stripped on parse — `[direct-mode] ...`, ` [direct-mode] ...`, and `\n[direct-mode] ...` all qualify. Token appearing mid-message (after any non-whitespace character) does NOT qualify.
74
+ - **Case:** Case-insensitive. `[direct-mode]`, `[Direct-Mode]`, `[DIRECT-MODE]` all accepted.
75
+ - **Bracket form:** Only the literal `[direct-mode]` (square brackets, hyphen between words) is recognized. Variants like `(direct-mode)`, `<direct-mode>`, `[direct mode]` (space instead of hyphen), or `[directmode]` (no separator) are NOT recognized.
76
+ - **Strip:** The literal `[direct-mode]` token (with surrounding whitespace) is stripped before any downstream agent sees the message. Dispatched agents receive only the post-strip content.
77
+ - **Effect:** Bypasses Routing Discipline Step 2 (cross-phase clarification). Main session routes the stripped message via Step 1 (explicit-intent handling).
78
+ - **Fallback:** If the stripped message itself has no clear skill named, Step 1 falls through to Step 3 clarification. (`[direct-mode]` is NOT a magic "always dispatch" flag — it bypasses cross-phase clarification, not all routing. If you want to bypass even ambiguous-intent clarification, you must name a specific skill or agent in the stripped message.)
79
+
80
+ **Examples:**
81
+
82
+ - `[direct-mode] /ars-lit-review on these papers` → dispatches academic-paper lit-review mode on the provided papers, no clarification
83
+ - `[direct-mode] run bibliography_agent` → dispatches bibliography_agent directly
84
+ - `[DIRECT-MODE] write me an abstract` → case-insensitive accepted; routes to abstract workflow without clarification
85
+
86
+ **Anti-patterns (escape hatch NOT honored):**
87
+
88
+ - `Please [direct-mode] dispatch X` — token not at byte-0 → ignored, clarification fires normally
89
+ - `[direct mode] ...` — missing hyphen, not the literal token → ignored
90
+ - `[direct-mode]` in second or later message of conversation — only first-message position counts
91
+
92
+ ## Worked examples
93
+
94
+ ### Example 1: cross-phase materials → clarify
95
+
96
+ **User input:**
97
+ > Here's an abstract and some literature, see what you can do.
98
+
99
+ **Materials detected:** Abstract (Phase 4) + literature (Phase 2) → cross-phase.
100
+
101
+ **Main session response:**
102
+ > I see you've provided an abstract and a literature collection. To route correctly, could you confirm which workflow you want?
103
+ >
104
+ > (a) **Full paper from existing scaffolding** — use your abstract as paper seed, expand literature into bibliography, draft full paper, then review/revise. Use `academic-pipeline` (`/ars-full`).
105
+ > (b) **Lit-review only** — produce an annotated bibliography matrix from the literature; don't touch your abstract. Use `academic-paper` (`/ars-lit-review`).
106
+ > (c) **Quality-check the abstract against the literature** — verify abstract claims are supported by the cited sources. Use `academic-paper-reviewer` (`/ars-citation-check`).
107
+ > (d) **Something else** — let me know what you're trying to do.
108
+ >
109
+ > Pick a-d, or describe the target deliverable. If you want me to dispatch a specific agent directly without this clarification, prefix your message with `[direct-mode]`.
110
+
111
+ ### Example 2: single-phase material → proceed
112
+
113
+ **User input:**
114
+ > Here's a folder of 30 PDF papers. Build me a lit-review on AI in medical imaging.
115
+
116
+ **Materials detected:** Literature only (Phase 2). Explicit intent: lit-review.
117
+
118
+ **Main session response:** Routes directly to `academic-paper /ars-lit-review` on the provided PDFs. No clarification fires (explicit intent overrides materials check).
119
+
120
+ ### Example 3: no materials + ambiguous → clarify
121
+
122
+ **User input:**
123
+ > Can you help me with my paper?
124
+
125
+ **Materials detected:** None. Intent: ambiguous.
126
+
127
+ **Main session response:**
128
+ > Of course. To route correctly, could you tell me what stage you're at?
129
+ >
130
+ > (a) **I have an idea but no clear research question** — Socratic mode to clarify direction. Use `deep-research` (`/ars-plan`).
131
+ > (b) **I have a question and need to do the research** — full research pipeline. Use `academic-pipeline` (`/ars-full`).
132
+ > (c) **I have research notes and need to write the paper** — drafting pipeline. Use `academic-paper`.
133
+ > (d) **I have a draft and want feedback** — peer-review simulation. Use `academic-paper-reviewer` (`/ars-review` equivalent).
134
+ >
135
+ > Pick a-d, or paste what you have so I can suggest a path.
136
+
137
+ ### Example 4: `[direct-mode]` honored
138
+
139
+ **User input:**
140
+ > [direct-mode] run bibliography_agent on these 30 PDFs
141
+
142
+ **Stripped message:** `run bibliography_agent on these 30 PDFs`
143
+
144
+ **Main session response:** Dispatches `bibliography_agent` directly with the PDFs as input. No clarification fires.
145
+
146
+ ### Example 5: `[direct-mode]` mid-message → NOT honored
147
+
148
+ **User input:**
149
+ > Hi, can you [direct-mode] just run bibliography_agent?
150
+
151
+ **Token position:** Not byte-0. Escape hatch ignored.
152
+
153
+ **Main session response:** Cross-phase or ambiguous check fires normally. May respond with clarification options.
154
+
155
+ ## When this protocol does NOT apply
156
+
157
+ - **Within a skill that has already been routed.** If `academic-pipeline` is already running and the orchestrator is dispatching Phase 3 → Phase 4 internally, this protocol does not fire on every internal dispatch. It governs the **entry point** of an ARS session, not in-pipeline transitions.
158
+ - **In-conversation follow-up.** After clarification resolves and a workflow starts, subsequent user messages within that workflow are interpreted by the active skill, not re-classified at the routing level. To re-route, the user starts a new session or uses `[direct-mode]` at the start of a new message.
159
+
160
+ ## v3.10 carry-over
161
+
162
+ When the active conductor architecture (#134) ships, this protocol's logic moves into the conductor's intake stage with structured task envelope dispatch. The conductor will:
163
+
164
+ - Classify intent deterministically with envelope schema rather than prompt-driven LLM judgment
165
+ - Hold pipeline state across turns (so cross-phase materials in workspace are treated as ongoing project state, not "user-provided ambiguous input")
166
+ - Eliminate the `[direct-mode]` escape hatch in favor of envelope-declared intent
167
+
168
+ Until v3.10 ships, v3.9.2's prompt-driven clarification gate is the source of truth.
@@ -0,0 +1,229 @@
1
+ # IRB Terminology Glossary — Convention-Bound Data-Handling Language
2
+
3
+ **Spec:** v3.6.7 §7.1 — pattern-protection reference for
4
+ `research_architect_agent` (survey designer mode), Pattern B1.
5
+
6
+ **Audience:** Agents drafting participant-facing consent/privacy language and
7
+ human authors reviewing instrument drafts.
8
+
9
+ **Status:** This is an ARS operational drafting convention. It is not a legal
10
+ definition set, an authority-selection rule, or a review determination. A term
11
+ is usable only with its named governing authority/convention, actor boundary,
12
+ data state, and lifecycle. Different regimes can classify the same retained
13
+ re-link key differently.
14
+
15
+ **Why this exists:** Survey drafts often use Anonymity, Confidentiality,
16
+ De-identification, and Pseudonymization as if they were interchangeable. That
17
+ can make participant-facing statements inaccurate. This glossary keeps the
18
+ facts visible while exact authority requirements remain in
19
+ `shared/human_subjects_authority_registry.json`.
20
+
21
+ ---
22
+
23
+ ## Record the Operational Facts First
24
+
25
+ Before choosing a term, record:
26
+
27
+ 1. every actor that collects, receives, stores, or can access the data,
28
+ including the survey platform, institution, research team, processors, and
29
+ recipients;
30
+ 2. direct identifiers, quasi-identifiers, free text, IP addresses, cookies,
31
+ device identifiers, timestamps, contact fields, and other metadata;
32
+ 3. whether a linkage/re-link key or other additional information is created,
33
+ who holds it, who can access both sides, and when it is destroyed or becomes
34
+ inaccessible;
35
+ 4. the purpose, disclosure boundary, security controls, retention, deletion,
36
+ reuse, transfer, publication, and withdrawal/deletion feasibility;
37
+ 5. the exact governing authority, institutional rule, or technical release
38
+ convention and the test it applies.
39
+
40
+ Before describing an IP address or other metadata as absent from the collected
41
+ record, verify the platform settings and actual data export/log behavior. If a
42
+ platform collects metadata that researchers cannot access, say both facts; do
43
+ not silently upgrade that scoped boundary to absolute anonymity.
44
+
45
+ ---
46
+
47
+ ## The Four Terms
48
+
49
+ ### Anonymity
50
+
51
+ **ARS drafting convention (not a universal legal definition):** Within the
52
+ explicitly named actor and lifecycle boundary, no identity-response link is
53
+ created, retained, or reasonably recoverable. Use an absolute claim such as
54
+ "anonymous to everyone" only when the platform/provider and every downstream
55
+ actor are included in, and satisfy, that verified boundary.
56
+
57
+ **Operational facts to support the wording:**
58
+
59
+ - no direct identifier or respondent-specific contact field within the stated
60
+ boundary;
61
+ - platform metadata collection and researcher access are stated accurately;
62
+ - no code, token, or key available within the boundary can reconnect identity
63
+ and response;
64
+ - quasi-identifier and free-text re-identification risks have been assessed
65
+ under a named project or institutional method.
66
+
67
+ **Illustrative drafting template — populate only verified facts:**
68
+
69
+ > "The research team does not ask for your name or contact details and cannot
70
+ > link the exported response to you. The survey platform [does/does not/has not
71
+ > been verified to] log IP addresses or device metadata; [state access,
72
+ > retention, and recipient details]."
73
+
74
+ **Drift to flag:** Calling a survey absolutely anonymous while collecting a
75
+ follow-up email, retaining a researcher-accessible response code, or leaving
76
+ platform metadata behavior unstated.
77
+
78
+ ### Confidentiality
79
+
80
+ **ARS drafting convention (not a universal legal definition):** An identity or
81
+ identity-response link may exist, while one or more named actors commit to
82
+ bounded access, use, and disclosure. Confidentiality is a handling promise; it
83
+ does not mean identifiers were never collected.
84
+
85
+ **Operational facts to support the wording:**
86
+
87
+ - identity/linkage holders and access roles are named;
88
+ - purposes, recipients, exceptions/limits, and publication treatment are stated;
89
+ - security, retention, deletion, reuse, and incident procedures match the
90
+ participant-facing promise.
91
+
92
+ **Illustrative drafting template — populate only verified facts:**
93
+
94
+ > "The research team will receive [identity/contact/linkage data]. Access is
95
+ > limited to [roles] for [purposes]. Identified data will be retained until
96
+ > [event/date] and then [verified disposition]. Reports will [describe actual
97
+ > aggregation, quotation, or identification practice]."
98
+
99
+ **Drift to flag:** Promising confidentiality without naming the actual
100
+ collectors/access roles or while the planned publication and retention behavior
101
+ contradicts the promise.
102
+
103
+ ### De-identification
104
+
105
+ **Convention-bound working use:** Data has been transformed and evaluated under
106
+ a **named** authority, institutional standard, or technical release test. This
107
+ glossary does not define a universal point at which data becomes de-identified,
108
+ and key destruction is not a cross-regime definition.
109
+
110
+ **Operational facts to record:**
111
+
112
+ - the named convention/test and the dataset/lifecycle stage to which it applies;
113
+ - identifiers removed, transformed, retained, or separately held;
114
+ - quasi-identifier and auxiliary-data attack assumptions;
115
+ - any linkage/re-link code, custodian, access boundary, derivation, disclosure,
116
+ and destruction/inaccessibility state;
117
+ - the method, evaluator, threshold, date, and residual-risk statement.
118
+
119
+ **Illustrative unprofiled authority example:** Under the U.S. HIPAA Privacy Rule,
120
+ [45 CFR 164.514(b)](https://www.ecfr.gov/current/title-45/subtitle-A/subchapter-C/part-164/subpart-E/section-164.514)
121
+ describes Expert Determination and Safe Harbor routes, while
122
+ [45 CFR 164.514(c)](https://www.ecfr.gov/current/title-45/subtitle-A/subchapter-C/part-164/subpart-E/section-164.514)
123
+ permits a covered entity to assign a re-identification code subject to stated
124
+ conditions. The effect of retaining a re-link key is therefore
125
+ convention-specific and cannot be classified portably. HIPAA is not a profile
126
+ in the current #666 registry; applicability and full requirements are
127
+ `unprofiled` here.
128
+
129
+ **Illustrative drafting template — populate the named convention and facts:**
130
+
131
+ > "For [dataset/lifecycle stage], the team applied [named de-identification
132
+ > convention/test] on [date]. [Identifiers and transformations]. A re-link code
133
+ > [does/does not] remain; it is held by [actor] under [access/disclosure
134
+ > conditions]. Residual risk was evaluated by [method/role] as [bounded result]."
135
+
136
+ **Drift to flag:** Saying only "identifiers were removed," omitting the governing
137
+ test, or assuming that the presence/absence of a key has the same legal effect
138
+ under every regime.
139
+
140
+ ### Pseudonymization
141
+
142
+ **GDPR authority-specific definition:**
143
+ [GDPR Article 4(5)](https://eur-lex.europa.eu/eli/reg/2016/679/2016-05-04/eng)
144
+ defines pseudonymisation for personal data by reference to processing that
145
+ prevents attribution to a specific data subject without additional information,
146
+ provided that additional information is kept separately and protected by
147
+ technical and organisational measures. Because the definition concerns
148
+ personal data, pseudonymised data is not treated as anonymous merely because a
149
+ code replaced direct identifiers.
150
+
151
+ Article 4(5) is a definitional anchor, not a separate requirement row in the
152
+ current bounded registry. When the exact GDPR profile is selected and the
153
+ applicability facts resolve true,
154
+ `eu.gdpr.article-89.1.research-safeguards` points to the bounded Article 89(1)
155
+ research-safeguards row, which records that pseudonymisation is assessed where
156
+ the research purposes can be fulfilled that way. It does not assert that every
157
+ study or every other regime uses the GDPR definition.
158
+
159
+ **Operational facts to support GDPR-specific wording:**
160
+
161
+ - the pseudonym/substitution method and the additional information needed for
162
+ attribution;
163
+ - separate holders, storage, and access controls;
164
+ - who can combine the dataset and additional information and for which purposes;
165
+ - retention/destruction state and technical/organisational safeguards.
166
+
167
+ **Illustrative drafting template — populate only verified facts:**
168
+
169
+ > "For the selected GDPR context, the working dataset is pseudonymised. Direct
170
+ > identifiers are replaced by [method]. The additional information needed to
171
+ > reconnect the code to a participant is held separately by [actor], accessible
172
+ > to [roles] for [purposes], and retained until [event/date]."
173
+
174
+ **Drift to flag:** Calling GDPR-pseudonymised data anonymous, or applying the
175
+ GDPR term to another authority without naming that authority's own convention.
176
+
177
+ ---
178
+
179
+ ## Quick Distinction Table
180
+
181
+ | Term | Identity/re-link state under the stated boundary | What the wording communicates | Authority/convention status |
182
+ |---|---|---|---|
183
+ | **Anonymity** | No identity-response link within a precisely named and verified actor/lifecycle boundary | inability to link within that boundary | ARS drafting convention unless a selected authority defines it |
184
+ | **Confidentiality** | Link may exist | limits on access, use, and disclosure | ARS drafting convention plus any selected authority/institutional terms |
185
+ | **De-identification** | Depends on the named test; retained-key effect is convention-specific | transformation and bounded residual-risk result | name the governing authority or technical release convention |
186
+ | **Pseudonymization** | Under GDPR, attribution requires separately kept additional information | a controlled but still personal-data state in the GDPR context | GDPR Article 4(5); other regimes must be named separately |
187
+
188
+ ---
189
+
190
+ ## Exact #666 Pointers for Participant/Data Language
191
+
192
+ These identifiers are navigation pointers only. Use them only from an exactly
193
+ selected, resolved profile and read the full row, obligated actor, predicate,
194
+ consumer scopes, and authority anchor.
195
+
196
+ | Drafting question | Exact bounded requirement pointer(s) |
197
+ |---|---|
198
+ | U.S. Common Rule participant consent | `us.45cfr46.116.informed-consent` |
199
+ | Taiwan Human Subjects Research Act participant information | `tw.hsra.article-14.consent-information` |
200
+ | GDPR lawful-basis record | `eu.gdpr.article-6.lawful-basis` |
201
+ | GDPR special-category condition/safeguards | `eu.gdpr.article-9.special-category-research` |
202
+ | GDPR information for direct collection | `eu.gdpr.article-13.direct-collection-information` |
203
+ | GDPR information for collection elsewhere | `eu.gdpr.article-14.indirect-collection-information` |
204
+ | GDPR scientific-research safeguards | `eu.gdpr.article-89.1.research-safeguards` |
205
+
206
+ The registry does not currently profile HIPAA de-identification, a universal
207
+ anonymity test, a universal confidentiality promise, or institution-specific
208
+ release thresholds. Mark those bases `unprofiled` rather than fabricating a row
209
+ or verdict.
210
+
211
+ ---
212
+
213
+ ## Where This Glossary Is Enforced
214
+
215
+ The `research_architect_agent` survey designer mode requires consent/privacy
216
+ language to pass through this glossary before output. The pattern-protection
217
+ clause lives in `deep-research/agents/research_architect_agent.md` under
218
+ `PATTERN PROTECTION (v3.6.7)`. Passing through the glossary means checking actual
219
+ data flow and attaching the named convention; it does not establish legal
220
+ applicability, compliance, review pathway, readiness, or authorization.
221
+
222
+ ---
223
+
224
+ ## Primary Sources and Local Authority Contract
225
+
226
+ - `shared/references/human_subjects_authority_protocol.md` ([local protocol](human_subjects_authority_protocol.md)) — exact-selection, bounded-profile, pointer-only, and no-verdict contract.
227
+ - [Curated #666 authority registry](../human_subjects_authority_registry.json) — requirement ids and row-local primary-source anchors.
228
+ - [45 CFR 164.514](https://www.ecfr.gov/current/title-45/subtitle-A/subchapter-C/part-164/subpart-E/section-164.514) — HIPAA de-identification and re-identification-code provisions; illustrative and unprofiled in #666.
229
+ - [GDPR Articles 4(5) and 89](https://eur-lex.europa.eu/eli/reg/2016/679/2016-05-04/eng) — pseudonymisation definition and research-safeguards source; only the bounded Article 89(1) requirement is represented by `eu.gdpr.article-89.1.research-safeguards`.