npm - molstar - Versions diffs - 2.3.3 → 2.3.8 - Mend

molstar 2.3.3 → 2.3.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1829) hide show

package/lib/commonjs/mol-util/zip/deflate.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-util/zip/inflate.js CHANGED Viewed

@@ -91,7 +91,7 @@ function inflateBlocks(ctx, count) {
             (0, util_1.codes2map)(util_1.U.dtree, mx1, dmap);
         }
         else {
-            throw new Error("unknown BTYPE " + BTYPE);
+            throw new Error("unknown BTYPE ".concat(BTYPE));
         }
         while (true) {
             var code = lmap[_get17(data, pos) & ML];

package/lib/commonjs/mol-util/zip/inflate.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-util/zip/zip.js CHANGED Viewed

@@ -123,7 +123,7 @@ function _readLocal(runtime, data, o, out, csize, usize, onlyNames) {
                     _a.sent();
                     out[name] = buf;
                     return [3 /*break*/, 4];
-                case 3: throw new Error("unknown compression method: " + cmpr);
+                case 3: throw new Error("unknown compression method: ".concat(cmpr));
                 case 4: return [2 /*return*/];
             }
         });

package/lib/commonjs/mol-util/zip/zip.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/perf-tests/mol-script.js CHANGED Viewed

@@ -65,7 +65,7 @@ function testQ() {
                 case 2:
                     structure = (_d.sent()).structure;
                     model = structure.models[0];
-                    return [4 /*yield*/, (0, node_fetch_1.default)("https://www.ebi.ac.uk/pdbe/api/validation/residuewise_outlier_summary/entry/" + model.entryId.toLowerCase())];
+                    return [4 /*yield*/, (0, node_fetch_1.default)("https://www.ebi.ac.uk/pdbe/api/validation/residuewise_outlier_summary/entry/".concat(model.entryId.toLowerCase()))];
                 case 3:
                     rawData = _d.sent();
                     _b = (_a = prop_1.StructureQualityReport).fromJson;

package/lib/commonjs/perf-tests/mol-script.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/commonjs/perf-tests/sets.js CHANGED Viewed

@@ -258,7 +258,7 @@ function testSegments() {
     while (it.hasNext) {
         var s = it.move();
         for (var j = s.start; j < s.end; j++) {
-            console.log(s.index + ": " + int_1.OrderedSet.getAt(data, j));
+            console.log("".concat(s.index, ": ").concat(int_1.OrderedSet.getAt(data, j)));
         }
     }
 }

package/lib/commonjs/perf-tests/sets.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/commonjs/perf-tests/sort.js CHANGED Viewed

@@ -56,7 +56,7 @@ function runTest(size) {
     prepareData();
     var suite = new B.Suite();
     function le(x, y) { return x - y; }
-    function name(n) { return n + " (" + size + " elems)"; }
+    function name(n) { return "".concat(n, " (").concat(size, " elems)"); }
     // TODO: the data copying skewes the benchmark -- write a simple benchmark util that allows for a preparation step.
     suite
         .add(name('native'), function () { return Array.prototype.sort.call(getData(), le); })

package/lib/commonjs/perf-tests/sort.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/commonjs/perf-tests/string-builder.js CHANGED Viewed

@@ -46,8 +46,8 @@ var Test;
             // .add(`naive`, () => naive(data))
             // .add(`join`, () => join(data))
             // .add(`${N} chunks`, () => SB.getChunks(build(data, N)))
-            .add(N + " str", function () { return string_builder_1.StringBuilder.getString(build(data, N)); })
-            .add(N + " str ws", function () { return string_builder_1.StringBuilder.getString(buildWS(data, N)); })
+            .add("".concat(N, " str"), function () { return string_builder_1.StringBuilder.getString(build(data, N)); })
+            .add("".concat(N, " str ws"), function () { return string_builder_1.StringBuilder.getString(buildWS(data, N)); })
             .on('cycle', function (e) { return console.log(String(e.target)); })
             .run();
     }

package/lib/commonjs/perf-tests/string-builder.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"string-builder.js","sourceRoot":"","sources":["../../../src/perf-tests/string-builder.ts"],"names":[],"mappings":";;;;AAAA,wDAA+B;AAC/B,6DAAiE;AAEjE,IAAiB,IAAI,CAoDpB;AApDD,WAAiB,IAAI;IACjB,SAAS,UAAU,CAAC,CAAS;QACzB,IAAM,GAAG,GAAa,EAAE,CAAC;QACzB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;YACxB,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,SAAS,GAAG,IAAI,CAAC,MAAM,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;SACvD;QACD,OAAO,GAAG,CAAC;IACf,CAAC;IAED,SAAS,KAAK,CAAC,IAAc,EAAE,SAAiB;QAC5C,IAAM,EAAE,GAAG,8BAAE,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;QAChC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE;YAC3C,8BAAE,CAAC,SAAS,CAAC,EAAE,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;YAC1B,8BAAE,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC;SACtB;QACD,OAAO,EAAE,CAAC;IACd,CAAC;IAED,SAAS,OAAO,CAAC,IAAc,EAAE,SAAiB;QAC9C,IAAM,EAAE,GAAG,8BAAE,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;QAChC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE;YAC3C,8BAAE,CAAC,SAAS,CAAC,EAAE,EAAE,IAAI,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC;SACnC;QACD,OAAO,EAAE,CAAC;IACd,CAAC;IAED,mCAAmC;IACnC,oBAAoB;IACpB,qEAAqE;IACrE,kBAAkB;IAClB,IAAI;IAEJ,kCAAkC;IAClC,oBAAoB;IACpB,uEAAuE;IACvE,2BAA2B;IAC3B,IAAI;IAEJ,SAAgB,GAAG;QACf,IAAM,IAAI,GAAG,UAAU,CAAC,EAAE,GAAG,MAAM,CAAC,CAAC;QAErC,IAAM,CAAC,GAAG,GAAG,CAAC;QACd,IAAM,KAAK,GAAG,IAAI,CAAC,CAAC,KAAK,EAAE,CAAC;QAC5B,KAAK;YACD,mCAAmC;YACnC,iCAAiC;YACjC,0DAA0D;aACzD,GAAG,CAAC,UAAG,CAAC,SAAM,EAAE,cAAM,OAAA,8BAAE,CAAC,SAAS,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,EAA5B,CAA4B,CAAC;aACnD,GAAG,CAAC,UAAG,CAAC,YAAS,EAAE,cAAM,OAAA,8BAAE,CAAC,SAAS,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,EAA9B,CAA8B,CAAC;aACxD,EAAE,CAAC,OAAO,EAAE,UAAC,CAAM,IAAK,OAAA,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,EAA7B,CAA6B,CAAC;aACtD,GAAG,EAAE,CAAC;IACf,CAAC;IAbe,QAAG,MAalB,CAAA;AACL,CAAC,EApDgB,IAAI,GAAJ,YAAI,KAAJ,YAAI,QAoDpB;AAED,IAAI,CAAC,GAAG,EAAE,CAAC"}

package/lib/commonjs/perf-tests/structure.js CHANGED Viewed

@@ -94,10 +94,10 @@ var DATA_DIR = './build/data';
 if (!fs.existsSync(DATA_DIR))
     fs.mkdirSync(DATA_DIR);
 function getBcifUrl(pdbId) {
-    return "http://www.ebi.ac.uk/pdbe/coordinates/" + pdbId.toLowerCase() + "/full?encoding=bcif";
+    return "http://www.ebi.ac.uk/pdbe/coordinates/".concat(pdbId.toLowerCase(), "/full?encoding=bcif");
 }
 function getBcifPath(pdbId) {
-    return DATA_DIR + "/" + pdbId.toLowerCase() + "_full.bcif";
+    return "".concat(DATA_DIR, "/").concat(pdbId.toLowerCase(), "_full.bcif");
 }
 function ensureBcifAvailable(pdbId) {
     return (0, tslib_1.__awaiter)(this, void 0, void 0, function () {
@@ -107,7 +107,7 @@ function ensureBcifAvailable(pdbId) {
                 case 0:
                     bcifPath = getBcifPath(pdbId);
                     if (!!fs.existsSync(bcifPath)) return [3 /*break*/, 4];
-                    console.log("downloading " + pdbId + " bcif...");
+                    console.log("downloading ".concat(pdbId, " bcif..."));
                     return [4 /*yield*/, (0, node_fetch_1.default)(getBcifUrl(pdbId))];
                 case 1:
                     data = _c.sent();
@@ -117,7 +117,7 @@ function ensureBcifAvailable(pdbId) {
                 case 2: return [4 /*yield*/, _a.apply(void 0, _b.concat([_c.sent()]))];
                 case 3:
                     _c.sent();
-                    console.log("done downloading " + pdbId + " bcif");
+                    console.log("done downloading ".concat(pdbId, " bcif"));
                     _c.label = 4;
                 case 4: return [2 /*return*/];
             }
@@ -307,7 +307,7 @@ var PropertyAccess;
                         // const q1 = Query(Q.generators.atoms({ residueTest: l => auth_comp_id(l) === 'ALA' }));
                         // const alas = await query(q1, a);
                         console.timeEnd('assembly');
-                        fs.writeFileSync(DATA_DIR + "/" + id + "_assembly.bcif", (0, mmcif_1.to_mmCIF)(id, a, true));
+                        fs.writeFileSync("".concat(DATA_DIR, "/").concat(id, "_assembly.bcif"), (0, mmcif_1.to_mmCIF)(id, a, true));
                         // fs.writeFileSync(`${DATA_DIR}/${id}_assembly.bcif`, to_mmCIF(id, Selection.unionStructure(alas), true));
                         console.log('exported');
                         return [2 /*return*/];
@@ -330,7 +330,7 @@ var PropertyAccess;
                         // const q1 = Query(Q.generators.atoms({ residueTest: l => auth_comp_id(l) === 'ALA' }));
                         // const alas = await query(q1, a);
                         console.timeEnd('symmetry');
-                        fs.writeFileSync(DATA_DIR + "/" + id + "_symm.bcif", (0, mmcif_1.to_mmCIF)(id, a, true));
+                        fs.writeFileSync("".concat(DATA_DIR, "/").concat(id, "_symm.bcif"), (0, mmcif_1.to_mmCIF)(id, a, true));
                         // fs.writeFileSync(`${DATA_DIR}/${id}_assembly.bcif`, to_mmCIF(id, Selection.unionStructure(alas), true));
                         console.log('exported');
                         return [2 /*return*/];
@@ -373,7 +373,7 @@ var PropertyAccess;
                         //     console.log(`${SP.unit.operator_name(e)} ${SP.atom.id(e)}`);
                         // }
                         // fs.writeFileSync(`${DATA_DIR}/${id}_surr.bcif`, to_mmCIF(id, a, true));
-                        fs.writeFileSync(DATA_DIR + "/" + id + "_surr.cif", (0, mmcif_1.to_mmCIF)(id, surr, false));
+                        fs.writeFileSync("".concat(DATA_DIR, "/").concat(id, "_surr.cif"), (0, mmcif_1.to_mmCIF)(id, surr, false));
                         console.log('exported');
                         return [2 /*return*/];
                 }

package/lib/commonjs/perf-tests/structure.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/perf-tests/test-xtc.js CHANGED Viewed

@@ -20,7 +20,7 @@ fs.readFile('C:\\Projects\\mol-star\\molstar\\build\\tests\\test.xtc', function
                 console.timeEnd('read');
                 console.time('parse');
                 return [4 /*yield*/, (0, parser_1.parseXtc)(new Uint8Array(data)).run(function (o) {
-                        console.log(o.root.progress.current + "/" + o.root.progress.max);
+                        console.log("".concat(o.root.progress.current, "/").concat(o.root.progress.max));
                     }, 1000)];
             case 1:
                 ret = _c.sent();

package/lib/commonjs/perf-tests/test-xtc.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"test-xtc.js","sourceRoot":"","sources":["../../../src/perf-tests/test-xtc.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,kDAAyB;AACzB,sDAAuD;AAEvD,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;AACvB,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;AACrB,EAAE,CAAC,QAAQ,CAAC,yDAAyD,EAAE,UAAO,GAAG,EAAE,IAAI;;;;;;gBACnF,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;gBACjB,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;gBACxB,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;gBACV,qBAAM,IAAA,iBAAQ,EAAC,IAAI,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,UAAA,CAAC;wBAClD,OAAO,CAAC,GAAG,~~CAAI~~,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,OAAO,~~SAAI~~,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,~~GAAK~~,CAAC,CAAC;oBACrE,CAAC,EAAE,IAAI,CAAC,EAAA;;gBAFF,GAAG,GAAG,SAEJ;gBACR,OAAO,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;gBAEzB,IAAI,GAAG,CAAC,OAAO,EAAE;oBACb,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;iBAC5B;qBAAM;oBACH,OAAO,CAAC,GAAG,CAAC,MAAA,GAAG,CAAC,MAAM,0CAAE,MAAM,CAAC,MAAM,CAAC,CAAC;oBACvC,OAAO,CAAC,GAAG,CAAC,MAAA,GAAG,CAAC,MAAM,0CAAE,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;iBAC7C;;;;KACJ,CAAC,CAAC"}
1	+ {"version":3,"file":"test-xtc.js","sourceRoot":"","sources":["../../../src/perf-tests/test-xtc.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,kDAAyB;AACzB,sDAAuD;AAEvD,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;AACvB,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;AACrB,EAAE,CAAC,QAAQ,CAAC,yDAAyD,EAAE,UAAO,GAAG,EAAE,IAAI;;;;;;gBACnF,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;gBACjB,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;gBACxB,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;gBACV,qBAAM,IAAA,iBAAQ,EAAC,IAAI,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,UAAA,CAAC;wBAClD,OAAO,CAAC,GAAG,CAAC,UAAG,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,OAAO,cAAI,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAE,CAAC,CAAC;oBACrE,CAAC,EAAE,IAAI,CAAC,EAAA;;gBAFF,GAAG,GAAG,SAEJ;gBACR,OAAO,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;gBAEzB,IAAI,GAAG,CAAC,OAAO,EAAE;oBACb,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;iBAC5B;qBAAM;oBACH,OAAO,CAAC,GAAG,CAAC,MAAA,GAAG,CAAC,MAAM,0CAAE,MAAM,CAAC,MAAM,CAAC,CAAC;oBACvC,OAAO,CAAC,GAAG,CAAC,MAAA,GAAG,CAAC,MAAM,0CAAE,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;iBAC7C;;;;KACJ,CAAC,CAAC"}

package/lib/commonjs/servers/common/file-handle.js CHANGED Viewed

@@ -35,7 +35,7 @@ function fileHandleFromDescriptor(file, name) {
                         return;
                     }
                     if (length !== bytesRead) {
-                        console.warn("byteCount " + length + " and bytesRead " + bytesRead + " differ");
+                        console.warn("byteCount ".concat(length, " and bytesRead ").concat(bytesRead, " differ"));
                     }
                     res({ bytesRead: bytesRead, buffer: buffer });
                 });

package/lib/commonjs/servers/common/file-handle.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/commonjs/servers/common/util.js CHANGED Viewed

@@ -24,7 +24,7 @@ function getParam(params) {
         return current;
     }
     catch (e) {
-        console_logger_1.ConsoleLogger.error('Config', "Unable to retrieve property " + path.join('.') + " from " + JSON.stringify(params));
+        console_logger_1.ConsoleLogger.error('Config', "Unable to retrieve property ".concat(path.join('.'), " from ").concat(JSON.stringify(params)));
     }
 }
 exports.getParam = getParam;

package/lib/commonjs/servers/common/util.js.map CHANGED Viewed

	@@ -1 +1 @@
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