molstar 2.3.3 → 2.3.8

package/lib/perf-tests/sort.js

@@ -50,7 +50,7 @@ export function runTest(size) {
     prepareData();
     var suite = new B.Suite();
     function le(x, y) { return x - y; }
-    function name(n) { return n + " (" + size + " elems)"; }
+    function name(n) { return "".concat(n, " (").concat(size, " elems)"); }
     // TODO: the data copying skewes the benchmark -- write a simple benchmark util that allows for a preparation step.
     suite
         .add(name('native'), function () { return Array.prototype.sort.call(getData(), le); })

package/lib/perf-tests/sort.js.map

@@ -1 +1 @@
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+{"version":3,"file":"sort.js","sourceRoot":"","sources":["../../src/perf-tests/sort.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,CAAC,MAAM,WAAW,CAAC;AAC/B,OAAO,KAAK,IAAI,MAAM,kBAAkB,CAAC;AAEzC,SAAS,OAAO,CAAC,CAAW;IACxB,KAAK,IAAI,CAAC,GAAG,CAAC,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;QACnC,IAAM,CAAC,GAAG,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,MAAM,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;QAC9C,IAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACf,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;QACZ,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;KACZ;IACD,OAAO,CAAC,CAAC;AACb,CAAC;AAED,SAAS,cAAc,CAAC,CAAS;IAC7B,IAAM,IAAI,GAAG,IAAI,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC,gBAAgB;IAChD,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;QACxB,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QACZ,qCAAqC;KACxC;IACD,OAAO,CAAC,IAAW,CAAC,CAAC;IACrB,OAAO,IAAI,CAAC;AAChB,CAAC;AAED,MAAM,UAAU,SAAS,CAAC,EAAO;IAC7B,IAAM,GAAG,GAAG,IAAI,EAAE,CAAC,WAAW,CAAC,EAAE,CAAC,MAAM,CAAC,CAAC;IAC1C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE;QAAE,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC,CAAC,CAAC,CAAC;IAC5D,OAAO,GAAG,CAAC;AACf,CAAC;AAED,MAAM,UAAU,WAAW,CAAC,GAAsB;IAC9C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;QACrC,IAAI,GAAG,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE;YACrB,OAAO,KAAK,CAAC;SAChB;KACJ;IACD,OAAO,IAAI,CAAC;AAChB,CAAC;AAGD,MAAM,UAAU,OAAO,CAAC,IAAY;IAChC,IAAM,KAAK,GAAG,cAAc,CAAC,IAAI,CAAC,CAAC;IAEnC,IAAM,UAAU,GAAe,EAAE,CAAC;IAClC,IAAI,UAAU,GAAG,CAAC,CAAC;IACnB,SAAS,WAAW;QAChB,UAAU,GAAG,CAAC,CAAC;QACf,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE;YAC1B,UAAU,CAAC,CAAC,CAAC,GAAG,SAAS,CAAC,KAAK,CAAC,CAAC;SACpC;IACL,CAAC;IAED,SAAS,OAAO;QACZ,IAAI,UAAU,GAAG,UAAU,CAAC,MAAM;YAAE,OAAO,UAAU,CAAC,UAAU,EAAE,CAAC,CAAC;QACpE,OAAO,SAAS,CAAC,KAAK,CAAC,CAAC;IAC5B,CAAC;IAED,WAAW,EAAE,CAAC;IAEd,IAAM,KAAK,GAAG,IAAI,CAAC,CAAC,KAAK,EAAE,CAAC;IAG5B,SAAS,EAAE,CAAC,CAAS,EAAE,CAAS,IAAI,OAAO,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;IAEnD,SAAS,IAAI,CAAC,CAAS,IAAI,OAAO,UAAG,CAAC,eAAK,IAAI,YAAS,CAAC,CAAC,CAAC;IAE3D,mHAAmH;IACnH,KAAK;SACA,GAAG,CAAC,IAAI,CAAC,QAAQ,CAAC,EAAE,cAAM,OAAA,KAAK,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,OAAO,EAAE,EAAE,EAAE,CAAC,EAAxC,CAAwC,CAAC;SACnE,GAAG,CAAC,IAAI,CAAC,OAAO,CAAC,EAAE,cAAM,OAAA,IAAI,CAAC,SAAS,CAAC,OAAO,EAAE,CAAC,EAAzB,CAAyB,CAAC;QACpD,mGAAmG;SAClG,GAAG,CAAC,IAAI,CAAC,eAAe,CAAC,EAAE,cAAM,OAAA,KAAK,CAAC,SAAS,CAAC,IAAI,CAAC,IAAI,CAAC,KAAK,EAAE,EAAE,CAAC,EAApC,CAAoC,CAAC;SACtE,GAAG,CAAC,IAAI,CAAC,cAAc,CAAC,EAAE,cAAM,OAAA,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,EAArB,CAAqB,CAAC;QACvD,sGAAsG;SACrG,EAAE,CAAC,OAAO,EAAE,UAAC,CAAM;QAChB,WAAW,EAAE,CAAC;QACd,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC;IAClC,CAAC,CAAC;SACD,GAAG,EAAE,CAAC;IACX,OAAO,CAAC,GAAG,CAAC,uBAAuB,CAAC,CAAC;AACzC,CAAC;AAED,eAAe;AACf,gBAAgB;AAChB,iBAAiB;AACjB,OAAO,CAAC,KAAK,CAAC,CAAC;AACf,mBAAmB"}

package/lib/perf-tests/string-builder.js

@@ -42,8 +42,8 @@ export var Test;
             // .add(`naive`, () => naive(data))
             // .add(`join`, () => join(data))
             // .add(`${N} chunks`, () => SB.getChunks(build(data, N)))
-            .add(N + " str", function () { return SB.getString(build(data, N)); })
-            .add(N + " str ws", function () { return SB.getString(buildWS(data, N)); })
+            .add("".concat(N, " str"), function () { return SB.getString(build(data, N)); })
+            .add("".concat(N, " str ws"), function () { return SB.getString(buildWS(data, N)); })
             .on('cycle', function (e) { return console.log(String(e.target)); })
             .run();
     }

package/lib/perf-tests/string-builder.js.map

@@ -1 +1 @@
-{"version":3,"file":"string-builder.js","sourceRoot":"","sources":["../../src/perf-tests/string-builder.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,CAAC,MAAM,WAAW,CAAC;AAC/B,OAAO,EAAE,aAAa,IAAI,EAAE,EAAE,MAAM,4BAA4B,CAAC;AAEjE,MAAM,KAAW,IAAI,CAoDpB;AApDD,WAAiB,IAAI;IACjB,SAAS,UAAU,CAAC,CAAS;QACzB,IAAM,GAAG,GAAa,EAAE,CAAC;QACzB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;YACxB,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,SAAS,GAAG,IAAI,CAAC,MAAM,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;SACvD;QACD,OAAO,GAAG,CAAC;IACf,CAAC;IAED,SAAS,KAAK,CAAC,IAAc,EAAE,SAAiB;QAC5C,IAAM,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;QAChC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE;YAC3C,EAAE,CAAC,SAAS,CAAC,EAAE,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;YAC1B,EAAE,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC;SACtB;QACD,OAAO,EAAE,CAAC;IACd,CAAC;IAED,SAAS,OAAO,CAAC,IAAc,EAAE,SAAiB;QAC9C,IAAM,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;QAChC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE;YAC3C,EAAE,CAAC,SAAS,CAAC,EAAE,EAAE,IAAI,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC;SACnC;QACD,OAAO,EAAE,CAAC;IACd,CAAC;IAED,mCAAmC;IACnC,oBAAoB;IACpB,qEAAqE;IACrE,kBAAkB;IAClB,IAAI;IAEJ,kCAAkC;IAClC,oBAAoB;IACpB,uEAAuE;IACvE,2BAA2B;IAC3B,IAAI;IAEJ,SAAgB,GAAG;QACf,IAAM,IAAI,GAAG,UAAU,CAAC,EAAE,GAAG,MAAM,CAAC,CAAC;QAErC,IAAM,CAAC,GAAG,GAAG,CAAC;QACd,IAAM,KAAK,GAAG,IAAI,CAAC,CAAC,KAAK,EAAE,CAAC;QAC5B,KAAK;YACD,mCAAmC;YACnC,iCAAiC;YACjC,0DAA0D;aACzD,GAAG,CAAI,CAAC,SAAM,EAAE,cAAM,OAAA,EAAE,CAAC,SAAS,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,EAA5B,CAA4B,CAAC;aACnD,GAAG,CAAI,CAAC,YAAS,EAAE,cAAM,OAAA,EAAE,CAAC,SAAS,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,EAA9B,CAA8B,CAAC;aACxD,EAAE,CAAC,OAAO,EAAE,UAAC,CAAM,IAAK,OAAA,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,EAA7B,CAA6B,CAAC;aACtD,GAAG,EAAE,CAAC;IACf,CAAC;IAbe,QAAG,MAalB,CAAA;AACL,CAAC,EApDgB,IAAI,KAAJ,IAAI,QAoDpB;AAED,IAAI,CAAC,GAAG,EAAE,CAAC"}
+{"version":3,"file":"string-builder.js","sourceRoot":"","sources":["../../src/perf-tests/string-builder.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,CAAC,MAAM,WAAW,CAAC;AAC/B,OAAO,EAAE,aAAa,IAAI,EAAE,EAAE,MAAM,4BAA4B,CAAC;AAEjE,MAAM,KAAW,IAAI,CAoDpB;AApDD,WAAiB,IAAI;IACjB,SAAS,UAAU,CAAC,CAAS;QACzB,IAAM,GAAG,GAAa,EAAE,CAAC;QACzB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,CAAC,EAAE,CAAC,EAAE,EAAE;YACxB,GAAG,CAAC,CAAC,CAAC,GAAG,EAAE,GAAG,CAAC,CAAC,SAAS,GAAG,IAAI,CAAC,MAAM,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;SACvD;QACD,OAAO,GAAG,CAAC;IACf,CAAC;IAED,SAAS,KAAK,CAAC,IAAc,EAAE,SAAiB;QAC5C,IAAM,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;QAChC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE;YAC3C,EAAE,CAAC,SAAS,CAAC,EAAE,EAAE,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;YAC1B,EAAE,CAAC,WAAW,CAAC,EAAE,CAAC,CAAC;SACtB;QACD,OAAO,EAAE,CAAC;IACd,CAAC;IAED,SAAS,OAAO,CAAC,IAAc,EAAE,SAAiB;QAC9C,IAAM,EAAE,GAAG,EAAE,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;QAChC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE;YAC3C,EAAE,CAAC,SAAS,CAAC,EAAE,EAAE,IAAI,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC;SACnC;QACD,OAAO,EAAE,CAAC;IACd,CAAC;IAED,mCAAmC;IACnC,oBAAoB;IACpB,qEAAqE;IACrE,kBAAkB;IAClB,IAAI;IAEJ,kCAAkC;IAClC,oBAAoB;IACpB,uEAAuE;IACvE,2BAA2B;IAC3B,IAAI;IAEJ,SAAgB,GAAG;QACf,IAAM,IAAI,GAAG,UAAU,CAAC,EAAE,GAAG,MAAM,CAAC,CAAC;QAErC,IAAM,CAAC,GAAG,GAAG,CAAC;QACd,IAAM,KAAK,GAAG,IAAI,CAAC,CAAC,KAAK,EAAE,CAAC;QAC5B,KAAK;YACD,mCAAmC;YACnC,iCAAiC;YACjC,0DAA0D;aACzD,GAAG,CAAC,UAAG,CAAC,SAAM,EAAE,cAAM,OAAA,EAAE,CAAC,SAAS,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,EAA5B,CAA4B,CAAC;aACnD,GAAG,CAAC,UAAG,CAAC,YAAS,EAAE,cAAM,OAAA,EAAE,CAAC,SAAS,CAAC,OAAO,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC,EAA9B,CAA8B,CAAC;aACxD,EAAE,CAAC,OAAO,EAAE,UAAC,CAAM,IAAK,OAAA,OAAO,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,EAA7B,CAA6B,CAAC;aACtD,GAAG,EAAE,CAAC;IACf,CAAC;IAbe,QAAG,MAalB,CAAA;AACL,CAAC,EApDgB,IAAI,KAAJ,IAAI,QAoDpB;AAED,IAAI,CAAC,GAAG,EAAE,CAAC"}

package/lib/perf-tests/structure.js

@@ -90,10 +90,10 @@ var DATA_DIR = './build/data';
 if (!fs.existsSync(DATA_DIR))
     fs.mkdirSync(DATA_DIR);
 function getBcifUrl(pdbId) {
-    return "http://www.ebi.ac.uk/pdbe/coordinates/" + pdbId.toLowerCase() + "/full?encoding=bcif";
+    return "http://www.ebi.ac.uk/pdbe/coordinates/".concat(pdbId.toLowerCase(), "/full?encoding=bcif");
 }
 function getBcifPath(pdbId) {
-    return DATA_DIR + "/" + pdbId.toLowerCase() + "_full.bcif";
+    return "".concat(DATA_DIR, "/").concat(pdbId.toLowerCase(), "_full.bcif");
 }
 function ensureBcifAvailable(pdbId) {
     return __awaiter(this, void 0, void 0, function () {
@@ -103,7 +103,7 @@ function ensureBcifAvailable(pdbId) {
                 case 0:
                     bcifPath = getBcifPath(pdbId);
                     if (!!fs.existsSync(bcifPath)) return [3 /*break*/, 4];
-                    console.log("downloading " + pdbId + " bcif...");
+                    console.log("downloading ".concat(pdbId, " bcif..."));
                     return [4 /*yield*/, fetch(getBcifUrl(pdbId))];
                 case 1:
                     data = _c.sent();
@@ -113,7 +113,7 @@ function ensureBcifAvailable(pdbId) {
                 case 2: return [4 /*yield*/, _a.apply(void 0, _b.concat([_c.sent()]))];
                 case 3:
                     _c.sent();
-                    console.log("done downloading " + pdbId + " bcif");
+                    console.log("done downloading ".concat(pdbId, " bcif"));
                     _c.label = 4;
                 case 4: return [2 /*return*/];
             }
@@ -302,7 +302,7 @@ export var PropertyAccess;
                         // const q1 = Query(Q.generators.atoms({ residueTest: l => auth_comp_id(l) === 'ALA' }));
                         // const alas = await query(q1, a);
                         console.timeEnd('assembly');
-                        fs.writeFileSync(DATA_DIR + "/" + id + "_assembly.bcif", to_mmCIF(id, a, true));
+                        fs.writeFileSync("".concat(DATA_DIR, "/").concat(id, "_assembly.bcif"), to_mmCIF(id, a, true));
                         // fs.writeFileSync(`${DATA_DIR}/${id}_assembly.bcif`, to_mmCIF(id, Selection.unionStructure(alas), true));
                         console.log('exported');
                         return [2 /*return*/];
@@ -325,7 +325,7 @@ export var PropertyAccess;
                         // const q1 = Query(Q.generators.atoms({ residueTest: l => auth_comp_id(l) === 'ALA' }));
                         // const alas = await query(q1, a);
                         console.timeEnd('symmetry');
-                        fs.writeFileSync(DATA_DIR + "/" + id + "_symm.bcif", to_mmCIF(id, a, true));
+                        fs.writeFileSync("".concat(DATA_DIR, "/").concat(id, "_symm.bcif"), to_mmCIF(id, a, true));
                         // fs.writeFileSync(`${DATA_DIR}/${id}_assembly.bcif`, to_mmCIF(id, Selection.unionStructure(alas), true));
                         console.log('exported');
                         return [2 /*return*/];
@@ -368,7 +368,7 @@ export var PropertyAccess;
                         //     console.log(`${SP.unit.operator_name(e)} ${SP.atom.id(e)}`);
                         // }
                         // fs.writeFileSync(`${DATA_DIR}/${id}_surr.bcif`, to_mmCIF(id, a, true));
-                        fs.writeFileSync(DATA_DIR + "/" + id + "_surr.cif", to_mmCIF(id, surr, false));
+                        fs.writeFileSync("".concat(DATA_DIR, "/").concat(id, "_surr.cif"), to_mmCIF(id, surr, false));
                         console.log('exported');
                         return [2 /*return*/];
                 }

package/lib/perf-tests/structure.js.map

@@ -1 +1 @@
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package/lib/perf-tests/test-xtc.js

@@ -18,7 +18,7 @@ fs.readFile('C:\\Projects\\mol-star\\molstar\\build\\tests\\test.xtc', function
                 console.timeEnd('read');
                 console.time('parse');
                 return [4 /*yield*/, parseXtc(new Uint8Array(data)).run(function (o) {
-                        console.log(o.root.progress.current + "/" + o.root.progress.max);
+                        console.log("".concat(o.root.progress.current, "/").concat(o.root.progress.max));
                     }, 1000)];
             case 1:
                 ret = _c.sent();

package/lib/perf-tests/test-xtc.js.map

@@ -1 +1 @@
-{"version":3,"file":"test-xtc.js","sourceRoot":"","sources":["../../src/perf-tests/test-xtc.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,KAAK,EAAE,MAAM,IAAI,CAAC;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,6BAA6B,CAAC;AAEvD,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;AACvB,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;AACrB,EAAE,CAAC,QAAQ,CAAC,yDAAyD,EAAE,UAAO,GAAG,EAAE,IAAI;;;;;;gBACnF,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;gBACjB,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;gBACxB,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;gBACV,qBAAM,QAAQ,CAAC,IAAI,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,UAAA,CAAC;wBAClD,OAAO,CAAC,GAAG,CAAI,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,OAAO,SAAI,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,GAAK,CAAC,CAAC;oBACrE,CAAC,EAAE,IAAI,CAAC,EAAA;;gBAFF,GAAG,GAAG,SAEJ;gBACR,OAAO,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;gBAEzB,IAAI,GAAG,CAAC,OAAO,EAAE;oBACb,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;iBAC5B;qBAAM;oBACH,OAAO,CAAC,GAAG,CAAC,MAAA,GAAG,CAAC,MAAM,0CAAE,MAAM,CAAC,MAAM,CAAC,CAAC;oBACvC,OAAO,CAAC,GAAG,CAAC,MAAA,GAAG,CAAC,MAAM,0CAAE,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;iBAC7C;;;;KACJ,CAAC,CAAC"}
+{"version":3,"file":"test-xtc.js","sourceRoot":"","sources":["../../src/perf-tests/test-xtc.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,KAAK,EAAE,MAAM,IAAI,CAAC;AACzB,OAAO,EAAE,QAAQ,EAAE,MAAM,6BAA6B,CAAC;AAEvD,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;AACvB,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;AACrB,EAAE,CAAC,QAAQ,CAAC,yDAAyD,EAAE,UAAO,GAAG,EAAE,IAAI;;;;;;gBACnF,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;gBACjB,OAAO,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC;gBACxB,OAAO,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;gBACV,qBAAM,QAAQ,CAAC,IAAI,UAAU,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,CAAC,UAAA,CAAC;wBAClD,OAAO,CAAC,GAAG,CAAC,UAAG,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,OAAO,cAAI,CAAC,CAAC,IAAI,CAAC,QAAQ,CAAC,GAAG,CAAE,CAAC,CAAC;oBACrE,CAAC,EAAE,IAAI,CAAC,EAAA;;gBAFF,GAAG,GAAG,SAEJ;gBACR,OAAO,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;gBAEzB,IAAI,GAAG,CAAC,OAAO,EAAE;oBACb,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;iBAC5B;qBAAM;oBACH,OAAO,CAAC,GAAG,CAAC,MAAA,GAAG,CAAC,MAAM,0CAAE,MAAM,CAAC,MAAM,CAAC,CAAC;oBACvC,OAAO,CAAC,GAAG,CAAC,MAAA,GAAG,CAAC,MAAM,0CAAE,MAAM,CAAC,CAAC,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC;iBAC7C;;;;KACJ,CAAC,CAAC"}

package/lib/servers/common/file-handle.js

@@ -31,7 +31,7 @@ export function fileHandleFromDescriptor(file, name) {
                         return;
                     }
                     if (length !== bytesRead) {
-                        console.warn("byteCount " + length + " and bytesRead " + bytesRead + " differ");
+                        console.warn("byteCount ".concat(length, " and bytesRead ").concat(bytesRead, " differ"));
                     }
                     res({ bytesRead: bytesRead, buffer: buffer });
                 });

package/lib/servers/common/file-handle.js.map

@@ -1 +1 @@
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package/lib/servers/common/util.js

@@ -21,7 +21,7 @@ export function getParam(params) {
         return current;
     }
     catch (e) {
-        ConsoleLogger.error('Config', "Unable to retrieve property " + path.join('.') + " from " + JSON.stringify(params));
+        ConsoleLogger.error('Config', "Unable to retrieve property ".concat(path.join('.'), " from ").concat(JSON.stringify(params)));
     }
 }
 //# sourceMappingURL=util.js.map

package/lib/servers/common/util.js.map

@@ -1 +1 @@
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+{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../src/servers/common/util.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,aAAa,EAAE,MAAM,+BAA+B,CAAC;AAE9D,MAAM,UAAU,QAAQ,CAAI,MAAW;IAAE,cAAiB;SAAjB,UAAiB,EAAjB,qBAAiB,EAAjB,IAAiB;QAAjB,6BAAiB;;IACtD,IAAI;QACA,IAAI,OAAO,GAAG,MAAM,CAAC;QACrB,KAAgB,UAAI,EAAJ,aAAI,EAAJ,kBAAI,EAAJ,IAAI,EAAE;YAAjB,IAAM,CAAC,aAAA;YACR,IAAI,OAAO,OAAO,KAAK,WAAW;gBAAE,OAAO;YAC3C,OAAO,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC;SACxB;QACD,OAAO,OAAO,CAAC;KAClB;IAAC,OAAO,CAAC,EAAE;QACR,aAAa,CAAC,KAAK,CAAC,QAAQ,EAAE,sCAA+B,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,mBAAS,IAAI,CAAC,SAAS,CAAC,MAAM,CAAC,CAAE,CAAC,CAAC;KACjH;AACL,CAAC"}

package/lib/servers/model/config.d.ts

@@ -53,7 +53,7 @@ declare const DefaultModelServerConfig: {
      *
      * /static query uses 'pdb-cif' and 'pdb-bcif' source names.
      */
-    sourceMap: ([string, string] | [string, string, "bcif" | "cif" | "cif.gz" | "bcif.gz"])[];
+    sourceMap: ([string, string] | [string, string, "cif" | "bcif" | "cif.gz" | "bcif.gz"])[];
 };
 export declare const ModelServerFetchFormats: readonly ["cif", "bcif", "cif.gz", "bcif.gz"];
 export declare type ModelServerFetchFormats = (typeof ModelServerFetchFormats)[number];
@@ -108,7 +108,7 @@ export declare const ModelServerConfig: {
      *
      * /static query uses 'pdb-cif' and 'pdb-bcif' source names.
      */
-    sourceMap: ([string, string] | [string, string, "bcif" | "cif" | "cif.gz" | "bcif.gz"])[];
+    sourceMap: ([string, string] | [string, string, "cif" | "bcif" | "cif.gz" | "bcif.gz"])[];
 };
 export declare const ModelServerConfigTemplate: ModelServerConfig;
 export declare function configureServer(): void;

package/lib/servers/model/config.js

@@ -167,7 +167,7 @@ function addServerArgs(parser) {
             'JS expressions can be used inside ${}, e.g. \'${id.substr(1, 2)}/${id}.mdb\'',
             'Can be specified multiple times.',
             'The `SOURCE` variable (e.g. `pdb-bcif`) is arbitrary and depends on how you plan to use the server.',
-            "Supported formats: " + ModelServerFetchFormats.join(', ')
+            "Supported formats: ".concat(ModelServerFetchFormats.join(', '))
         ].join('\n'),
     });
     parser.add_argument('--sourceMapUrl', {
@@ -177,7 +177,7 @@ function addServerArgs(parser) {
         help: [
             'Same as --sourceMap but for URL. \'--sourceMapUrl src url format\'',
             'Example: \'pdb-cif "https://www.ebi.ac.uk/pdbe/entry-files/download/${id}_updated.cif" cif\'',
-            "Supported formats: " + ModelServerFetchFormats.join(', ')
+            "Supported formats: ".concat(ModelServerFetchFormats.join(', '))
         ].join('\n'),
     });
 }
@@ -197,7 +197,6 @@ function addJsonConfigArgs(parser) {
             'If a property is not specified, cmd line param/OS variable/default value are used.'
         ].join('\n'),
         required: false,
-        action: 'store_true'
     });
     parser.add_argument('--printCfg', { help: 'Print current config for validation and exit.', required: false, action: 'store_true' });
     parser.add_argument('--cfgTemplate', { help: 'Prints default JSON config template to be modified and exits.', required: false, action: 'store_true' });
@@ -223,7 +222,7 @@ function validateConfigAndSetupSourceMap() {
         'switch (source.toLowerCase()) {'
     ], ModelServerConfig.sourceMap.map(function (_a) {
         var source = _a[0], path = _a[1], format = _a[2];
-        return "case '" + source.toLowerCase() + "': return [`" + path + "`, '" + format + "'];";
+        return "case '".concat(source.toLowerCase(), "': return [`").concat(path, "`, '").concat(format, "'];");
     }), true), [
         '}',
     ], false).join('\n'));
@@ -231,7 +230,7 @@ function validateConfigAndSetupSourceMap() {
 function parseConfigArguments() {
     var parser = new argparse.ArgumentParser({
         add_help: true,
-        description: "ModelServer " + VERSION + ", (c) 2018-2020, Mol* contributors"
+        description: "ModelServer ".concat(VERSION, ", (c) 2018-2020, Mol* contributors")
     });
     addJsonConfigArgs(parser);
     addServerArgs(parser);

package/lib/servers/model/config.js.map

@@ -1 +1 @@
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package/lib/servers/model/preprocess/master.js

@@ -21,7 +21,7 @@ function description() {
             }
         }
     };
-    return "Preprocess CIF files to include custom properties and convert them to BinaryCIF format.\n\nExample cfg.json: " + JSON.stringify(exampleCfg, null, 2);
+    return "Preprocess CIF files to include custom properties and convert them to BinaryCIF format.\n\nExample cfg.json: ".concat(JSON.stringify(exampleCfg, null, 2));
 }
 var cmdParser = new argparse.ArgumentParser({
     add_help: true,

package/lib/servers/model/preprocess/master.js.map

@@ -1 +1 @@
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package/lib/servers/model/preprocess/parallel.js

@@ -17,10 +17,10 @@ export function runMaster(config, entries) {
         if (msg.type === 'tick') {
             progress++;
             var elapsed = now() - started;
-            console.log("[" + progress + "/" + entries.length + "] in " + PerformanceMonitor.format(elapsed) + " (avg " + PerformanceMonitor.format(elapsed / progress) + ").");
+            console.log("[".concat(progress, "/").concat(entries.length, "] in ").concat(PerformanceMonitor.format(elapsed), " (avg ").concat(PerformanceMonitor.format(elapsed / progress), ")."));
         }
         else if (msg.type === 'error') {
-            console.error(msg.id + ": " + msg.error);
+            console.error("".concat(msg.id, ": ").concat(msg.error));
         }
     };
     if (entries.length === 1) {

package/lib/servers/model/preprocess/parallel.js.map

@@ -1 +1 @@
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package/lib/servers/model/preprocess/util.js

@@ -5,11 +5,11 @@
  */
 import { Progress } from '../../../mol-task';
 export function showProgress(p) {
-    process.stdout.write("\r" + new Array(80).join(' '));
-    process.stdout.write("\r" + Progress.format(p));
+    process.stdout.write("\r".concat(new Array(80).join(' ')));
+    process.stdout.write("\r".concat(Progress.format(p)));
 }
 export function clearLine() {
-    process.stdout.write("\r" + new Array(80).join(' '));
+    process.stdout.write("\r".concat(new Array(80).join(' ')));
     process.stdout.write("\r");
 }
 //# sourceMappingURL=util.js.map

package/lib/servers/model/preprocess/util.js.map

@@ -1 +1 @@
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+{"version":3,"file":"util.js","sourceRoot":"","sources":["../../../../src/servers/model/preprocess/util.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,EAAE,QAAQ,EAAE,MAAM,mBAAmB,CAAC;AAE7C,MAAM,UAAU,YAAY,CAAC,CAAW;IACpC,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,YAAK,IAAI,KAAK,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAE,CAAC,CAAC;IACrD,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,YAAK,QAAQ,CAAC,MAAM,CAAC,CAAC,CAAC,CAAE,CAAC,CAAC;AACpD,CAAC;AAED,MAAM,UAAU,SAAS;IACrB,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,YAAK,IAAI,KAAK,CAAC,EAAE,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAE,CAAC,CAAC;IACrD,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;AAC/B,CAAC"}

package/lib/servers/model/properties/providers/pdbe.js

@@ -53,9 +53,9 @@ var residuewise_outlier_summary;
         return function (model) { return __awaiter(_this, void 0, void 0, function () {
             var key, fn;
             return __generator(this, function (_a) {
-                key = "" + model.entryId[1] + model.entryId[2];
+                key = "".concat(model.entryId[1]).concat(model.entryId[2]);
                 if (!json.has(key)) {
-                    fn = path.join(pathPrefix, key + ".json");
+                    fn = path.join(pathPrefix, "".concat(key, ".json"));
                     if (!fs.existsSync(fn))
                         json.set(key, {});
                     // TODO: use async readFile?
@@ -79,7 +79,7 @@ function getApiUrl(params, name, fallback) {
 function getFilePrefix(params, name) {
     var ret = getParam(params, 'PDBe', 'File', name);
     if (!ret)
-        throw new Error("PDBe file prefix '" + name + "' not set!");
+        throw new Error("PDBe file prefix '".concat(name, "' not set!"));
     return ret;
 }
 function useFileSource(params) {
@@ -96,7 +96,7 @@ function apiQueryProvider(urlPrefix, cache) {
                     _a.trys.push([0, 3, , 4]);
                     if (cache[cacheKey])
                         return [2 /*return*/, cache[cacheKey]];
-                    return [4 /*yield*/, fetchRetry(urlPrefix + "/" + model.entryId.toLowerCase(), 1500, 5)];
+                    return [4 /*yield*/, fetchRetry("".concat(urlPrefix, "/").concat(model.entryId.toLowerCase()), 1500, 5)];
                 case 1:
                     rawData = _a.sent();
                     // TODO: is this ok?
@@ -110,7 +110,7 @@ function apiQueryProvider(urlPrefix, cache) {
                 case 3:
                     e_1 = _a.sent();
                     // TODO: handle better
-                    ConsoleLogger.warn('Props', "Could not retrieve prop @" + (urlPrefix + "/" + model.entryId.toLowerCase()));
+                    ConsoleLogger.warn('Props', "Could not retrieve prop @".concat("".concat(urlPrefix, "/").concat(model.entryId.toLowerCase())));
                     return [2 /*return*/, {}];
                 case 4: return [2 /*return*/];
             }

package/lib/servers/model/properties/providers/pdbe.js.map

@@ -1 +1 @@
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+{"version":3,"file":"pdbe.js","sourceRoot":"","sources":["../../../../../src/servers/model/properties/providers/pdbe.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,KAAK,EAAE,MAAM,IAAI,CAAC;AACzB,OAAO,KAAK,IAAI,MAAM,MAAM,CAAC;AAE7B,OAAO,EAAE,8BAA8B,EAAE,sBAAsB,EAAE,MAAM,2DAA2D,CAAC;AACnI,OAAO,EAAE,UAAU,EAAE,MAAM,yBAAyB,CAAC;AACrD,OAAO,EAAE,IAAI,EAAE,MAAM,sBAAsB,CAAC;AAC5C,OAAO,EAAE,qBAAqB,EAAE,MAAM,gDAAgD,CAAC;AACvF,OAAO,EAAE,mBAAmB,EAAE,MAAM,+CAA+C,CAAC;AAEpF,OAAO,EAAE,aAAa,EAAE,MAAM,qCAAqC,CAAC;AACpE,OAAO,EAAE,QAAQ,EAAE,MAAM,sBAAsB,CAAC;AAEhD,MAAM,CAAC,IAAM,2BAA2B,GAAwB,UAAO,EAAwB;QAAtB,KAAK,WAAA,EAAE,MAAM,YAAA,EAAE,KAAK,WAAA;;;;;;oBACnF,kBAAkB,GAAG,aAAa,CAAC,MAAM,CAAC;wBAC5C,CAAC,CAAC,2BAA2B,CAAC,wBAAwB,CAAC,aAAa,CAAC,MAAM,EAAE,6BAA6B,CAAC,CAAC;wBAC5G,CAAC,CAAC,gBAAgB,CAAC,SAAS,CAAC,MAAM,EAAE,6BAA6B,EAAE,sBAAsB,CAAC,gBAAgB,CAAC,EAAE,KAAK,CAAC,CAAC;oBAC5G,KAAA,CAAA,KAAA,sBAAsB,CAAA,CAAC,QAAQ,CAAA;0BAAC,KAAK;oBAAE,qBAAM,kBAAkB,CAAC,KAAK,CAAC,EAAA;;oBAA7E,IAAI,GAAG,wBAAuC,SAA+B,GAAC;oBACpF,sBAAO,8BAA8B,CAAC,GAAG,CAAC,KAAK,EAAE,EAAE,SAAS,EAAE,sBAAsB,CAAC,gBAAgB,EAAE,EAAE,IAAI,CAAC,EAAC;;;;CAClH,CAAC;AAEF,MAAM,CAAC,IAAM,sBAAsB,GAAwB,UAAC,EAAwB;QAAtB,KAAK,WAAA,EAAE,MAAM,YAAA,EAAE,KAAK,WAAA;IAC9E,IAAM,kBAAkB,GAAG,gBAAgB,CAAC,SAAS,CAAC,MAAM,EAAE,oBAAoB,EAAE,kDAAkD,CAAC,EAAE,KAAK,CAAC,CAAC;IAChJ,OAAO,qBAAqB,CAAC,kBAAkB,CAAC,KAAK,EAAE,EAAE,kBAAkB,oBAAA,EAAE,CAAC,CAAC;AACnF,CAAC,CAAC;AAEF,MAAM,CAAC,IAAM,oBAAoB,GAAwB,UAAC,EAAwB;QAAtB,KAAK,WAAA,EAAE,MAAM,YAAA,EAAE,KAAK,WAAA;IAC5E,IAAM,kBAAkB,GAAG,gBAAgB,CAAC,SAAS,CAAC,MAAM,EAAE,mBAAmB,EAAE,0DAA0D,CAAC,EAAE,KAAK,CAAC,CAAC;IACvJ,OAAO,mBAAmB,CAAC,kBAAkB,CAAC,KAAK,EAAE,EAAE,kBAAkB,oBAAA,EAAE,CAAC,CAAC;AACjF,CAAC,CAAC;AAEF,IAAU,2BAA2B,CAgBpC;AAhBD,WAAU,2BAA2B;IACjC,IAAM,IAAI,GAAG,IAAI,GAAG,EAAe,CAAC;IACpC,SAAgB,wBAAwB,CAAC,UAAkB;QAA3D,iBAaC;QAZG,+DAA+D;QAC/D,uEAAuE;QACvE,OAAO,UAAO,KAAY;;;gBAChB,GAAG,GAAG,UAAG,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,SAAG,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,CAAE,CAAC;gBACrD,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE;oBACV,EAAE,GAAG,IAAI,CAAC,IAAI,CAAC,UAAU,EAAE,UAAG,GAAG,UAAO,CAAC,CAAC;oBAChD,IAAI,CAAC,EAAE,CAAC,UAAU,CAAC,EAAE,CAAC;wBAAE,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,EAAG,CAAC,CAAC;oBAC3C,4BAA4B;;wBACvB,IAAI,CAAC,GAAG,CAAC,GAAG,EAAE,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,EAAE,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC;iBAC/D;gBACD,sBAAO,IAAI,CAAC,GAAG,CAAC,GAAG,CAAE,CAAC,KAAK,CAAC,OAAO,CAAC,WAAW,EAAE,CAAC,IAAI,EAAG,EAAC;;aAC7D,CAAC;IACN,CAAC;IAbe,oDAAwB,2BAavC,CAAA;AACL,CAAC,EAhBS,2BAA2B,KAA3B,2BAA2B,QAgBpC;AAED,SAAS,SAAS,CAAC,MAAW,EAAE,IAAY,EAAE,QAAgB;IAC1D,IAAM,GAAG,GAAG,QAAQ,CAAS,MAAM,EAAE,MAAM,EAAE,KAAK,EAAE,IAAI,CAAC,CAAC;IAC1D,IAAI,CAAC,GAAG;QAAE,OAAO,QAAQ,CAAC;IAC1B,IAAI,GAAG,CAAC,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,KAAK,GAAG;QAAE,OAAO,GAAG,CAAC,SAAS,CAAC,CAAC,EAAE,GAAG,CAAC,MAAM,GAAG,CAAC,CAAC,CAAC;IACzE,OAAO,GAAG,CAAC;AACf,CAAC;AAED,SAAS,aAAa,CAAC,MAAW,EAAE,IAAY;IAC5C,IAAM,GAAG,GAAG,QAAQ,CAAS,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,CAAC,CAAC;IAC3D,IAAI,CAAC,GAAG;QAAE,MAAM,IAAI,KAAK,CAAC,4BAAqB,IAAI,eAAY,CAAC,CAAC;IACjE,OAAO,GAAG,CAAC;AACf,CAAC;AAED,SAAS,aAAa,CAAC,MAAW;IAC9B,OAAO,CAAC,CAAC,QAAQ,CAAU,MAAM,EAAE,MAAM,EAAE,eAAe,CAAC,CAAC;AAChE,CAAC;AAED,SAAS,gBAAgB,CAAC,SAAiB,EAAE,KAAU;IAAvD,iBAiBC;IAhBG,IAAM,QAAQ,GAAG,IAAI,CAAC,QAAQ,EAAE,CAAC;IACjC,OAAO,UAAO,KAAY;;;;;;oBAElB,IAAI,KAAK,CAAC,QAAQ,CAAC;wBAAE,sBAAO,KAAK,CAAC,QAAQ,CAAC,EAAC;oBAC5B,qBAAM,UAAU,CAAC,UAAG,SAAS,cAAI,KAAK,CAAC,OAAO,CAAC,WAAW,EAAE,CAAE,EAAE,IAAI,EAAE,CAAC,CAAC,EAAA;;oBAAlF,OAAO,GAAG,SAAwE;oBACxF,oBAAoB;oBACpB,IAAI,OAAO,CAAC,MAAM,KAAK,GAAG;wBAAE,sBAAO,EAAG,EAAC;oBACxB,qBAAM,OAAO,CAAC,IAAI,EAAE,EAAA;;oBAA7B,IAAI,GAAI,CAAC,SAAoB,CAAS,CAAC,KAAK,CAAC,OAAO,CAAC,WAAW,EAAE,CAAC,IAAI,EAAG;oBAChF,KAAK,CAAC,QAAQ,CAAC,GAAG,IAAI,CAAC;oBACvB,sBAAO,IAAI,EAAC;;;oBAEZ,sBAAsB;oBACtB,aAAa,CAAC,IAAI,CAAC,OAAO,EAAE,mCAA4B,UAAG,SAAS,cAAI,KAAK,CAAC,OAAO,CAAC,WAAW,EAAE,CAAE,CAAE,CAAC,CAAC;oBACzG,sBAAO,EAAG,EAAC;;;;SAElB,CAAC;AACN,CAAC"}

package/lib/servers/model/property-provider.js

@@ -23,7 +23,7 @@ export function createModelPropertiesProvider(configOrPath) {
             config = JSON.parse(fs.readFileSync(configOrPath, 'utf8'));
         }
         catch (_a) {
-            ConsoleLogger.error('Config', "Could not read property provider config file '" + configOrPath + "', ignoring.");
+            ConsoleLogger.error('Config', "Could not read property provider config file '".concat(configOrPath, "', ignoring."));
             return function () { return []; };
         }
     }
@@ -39,7 +39,7 @@ export function createModelPropertiesProvider(configOrPath) {
             ps.push(attachModelProperties[p]);
         }
         else {
-            ConsoleLogger.error('Config', "Could not find property provider '" + p + "', ignoring.");
+            ConsoleLogger.error('Config', "Could not find property provider '".concat(p, "', ignoring."));
         }
     }
     return function (model, cache) {

package/lib/servers/model/property-provider.js.map

@@ -1 +1 @@
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+{"version":3,"file":"property-provider.js","sourceRoot":"","sources":["../../../src/servers/model/property-provider.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,MAAM,IAAI,CAAC;AAEzB,OAAO,EAAE,iBAAiB,IAAI,MAAM,EAAE,MAAM,UAAU,CAAC;AACvD,OAAO,EAAE,aAAa,EAAE,MAAM,+BAA+B,CAAC;AAE9D,oCAAoC;AACpC,OAAO,KAAK,SAAS,MAAM,mBAAmB,CAAC;AAC/C,OAAO,KAAK,UAAU,MAAM,oBAAoB,CAAC;AAEjD,IAAM,qBAAqB,GAA2C;IAClE,IAAI,EAAE,SAAS,CAAC,qBAAqB;IACrC,KAAK,EAAE,UAAU,CAAC,qBAAqB;CAC1C,CAAC;AAWF,MAAM,UAAU,uCAAuC;IACnD,OAAO,6BAA6B,CAAC,MAAM,CAAC,gBAAgB,CAAC,CAAC;AAClE,CAAC;AAED,MAAM,UAAU,6BAA6B,CAAC,YAA8D;IACxG,IAAI,MAAmC,CAAC;IACxC,IAAI,OAAO,YAAY,KAAK,QAAQ,EAAE;QAClC,IAAI;YACA,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,YAAY,EAAE,MAAM,CAAC,CAAC,CAAC;SAC9D;QAAC,WAAM;YACJ,aAAa,CAAC,KAAK,CAAC,QAAQ,EAAE,wDAAiD,YAAY,iBAAc,CAAC,CAAC;YAC3G,OAAO,cAAM,OAAA,EAAE,EAAF,CAAE,CAAC;SACnB;KACJ;SAAM;QACH,MAAM,GAAG,YAAa,CAAC;KAC1B;IAED,IAAI,CAAC,MAAM,IAAI,CAAC,MAAM,CAAC,OAAO,IAAI,MAAM,CAAC,OAAO,CAAC,MAAM,KAAK,CAAC;QAAE,OAAO,KAAK,CAAC,CAAC;IAE7E,IAAM,EAAE,GAA4B,EAAE,CAAC;IACvC,KAAgB,UAAc,EAAd,KAAA,MAAM,CAAC,OAAO,EAAd,cAAc,EAAd,IAAc,EAAE;QAA3B,IAAM,CAAC,SAAA;QACR,IAAI,CAAC,IAAI,qBAAqB,EAAE;YAC5B,EAAE,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC,CAAC,CAAC,CAAC;SACrC;aAAM;YACH,aAAa,CAAC,KAAK,CAAC,QAAQ,EAAE,4CAAqC,CAAC,iBAAc,CAAC,CAAC;SACvF;KACJ;IAED,OAAO,UAAC,KAAK,EAAE,KAAK;QAChB,IAAM,GAAG,GAAmB,EAAE,CAAC;QAC/B,KAAgB,UAAE,EAAF,SAAE,EAAF,gBAAE,EAAF,IAAE,EAAE;YAAf,IAAM,CAAC,WAAA;YACR,KAAgB,UAA0C,EAA1C,KAAA,CAAC,CAAC,EAAE,KAAK,OAAA,EAAE,KAAK,OAAA,EAAE,MAAM,EAAE,MAAM,CAAC,MAAM,EAAE,CAAC,EAA1C,cAA0C,EAA1C,IAA0C;gBAArD,IAAM,CAAC,SAAA;gBAAgD,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;aAAA;SAC3E;QACD,OAAO,GAAG,CAAC;IACf,CAAC,CAAC;AACN,CAAC"}

package/lib/servers/model/query.js

@@ -7,7 +7,7 @@
 import * as fs from 'fs';
 import { VERSION } from './version';
 import { runLocal } from './server/api-local';
-console.log("Mol* ModelServer (" + VERSION + "), (c) 2018-2020 Mol* authors");
+console.log("Mol* ModelServer (".concat(VERSION, "), (c) 2018-2020 Mol* authors"));
 console.log("");
 var exampleWorkload = [{
         output: 'c:/test/quick/localapi/1tqn_full.cif',

package/lib/servers/model/query.js.map

@@ -1 +1 @@
-{"version":3,"file":"query.js","sourceRoot":"","sources":["../../../src/servers/model/query.ts"],"names":[],"mappings":";AACA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,MAAM,IAAI,CAAC;AACzB,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACpC,OAAO,EAAc,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAE1D,OAAO,CAAC,GAAG,CAAC,uBAAqB,OAAO,kCAA+B,CAAC,CAAC;AACzE,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;AAEhB,IAAM,eAAe,GAAe,CAAC;QACjC,MAAM,EAAE,sCAAsC;QAC9C,OAAO,EAAE,CAAC;gBACN,KAAK,EAAE,wBAAwB;gBAC/B,KAAK,EAAE,MAAM,EAAE,iCAAiC;aACnD,CAAC;KACL,EAAE;QACC,MAAM,EAAE,uCAAuC;QAC/C,OAAO,EAAE,CAAC;gBACN,KAAK,EAAE,wBAAwB;gBAC/B,KAAK,EAAE,MAAM;aAChB,CAAC;KACL,EAAE;QACC,MAAM,EAAE,wCAAwC;QAChD,OAAO,EAAE,CAAC;gBACN,KAAK,EAAE,gCAAgC;gBACvC,KAAK,EAAE,oBAAoB;gBAC3B,MAAM,EAAE,EAAE,SAAS,EAAE,EAAE,aAAa,EAAE,KAAK,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE;aAC7D,CAAC;KACL,EAAE;QACC,MAAM,EAAE,yCAAyC;QACjD,OAAO,EAAE,CAAC;gBACN,KAAK,EAAE,gCAAgC;gBACvC,KAAK,EAAE,oBAAoB;gBAC3B,MAAM,EAAE,EAAE,SAAS,EAAE,CAAC,EAAE,aAAa,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,yDAAyD;aACzH,CAAC;KACL,EAAE;QACC,MAAM,EAAE,wCAAwC;QAChD,OAAO,EAAE,CAAC;gBACN,KAAK,EAAE,gCAAgC;gBACvC,KAAK,EAAE,oBAAoB;gBAC3B,MAAM,EAAE,EAAE,SAAS,EAAE,EAAE,aAAa,EAAE,KAAK,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE;aAC7D,EAAE;gBACC,KAAK,EAAE,wBAAwB;gBAC/B,KAAK,EAAE,MAAM,EAAE,iCAAiC;aACnD,CAAC;QACF,OAAO,EAAE,IAAI;QACb,SAAS,EAAE,CAAC;KACf,CAAC,CAAC;AAGH,IAAI,OAAO,CAAC,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE;IAC3B,IAAM,IAAI,GAAG;QACT,SAAS;QACT,EAAE;QACF,yBAAyB;QACzB,EAAE;QACF,4EAA4E;QAC5E,4FAA4F;QAC5F,2CAA2C;QAC3C,EAAE;QACF,eAAe;QACf,EAAE;QACF,IAAI,CAAC,SAAS,CAAC,eAAe,EAAE,IAAI,EAAE,CAAC,CAAC;KAC3C,CAAC;IAEF,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;CAChC;KAAM;IACH,IAAI;QACA,IAAM,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC;QACnE,QAAQ,CAAC,KAAK,CAAC,CAAC;KACnB;IAAC,OAAO,CAAC,EAAE;QACR,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;KACpB;CACJ;AAED,6DAA6D"}
+{"version":3,"file":"query.js","sourceRoot":"","sources":["../../../src/servers/model/query.ts"],"names":[],"mappings":";AACA;;;;GAIG;AAEH,OAAO,KAAK,EAAE,MAAM,IAAI,CAAC;AACzB,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AACpC,OAAO,EAAc,QAAQ,EAAE,MAAM,oBAAoB,CAAC;AAE1D,OAAO,CAAC,GAAG,CAAC,4BAAqB,OAAO,kCAA+B,CAAC,CAAC;AACzE,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC;AAEhB,IAAM,eAAe,GAAe,CAAC;QACjC,MAAM,EAAE,sCAAsC;QAC9C,OAAO,EAAE,CAAC;gBACN,KAAK,EAAE,wBAAwB;gBAC/B,KAAK,EAAE,MAAM,EAAE,iCAAiC;aACnD,CAAC;KACL,EAAE;QACC,MAAM,EAAE,uCAAuC;QAC/C,OAAO,EAAE,CAAC;gBACN,KAAK,EAAE,wBAAwB;gBAC/B,KAAK,EAAE,MAAM;aAChB,CAAC;KACL,EAAE;QACC,MAAM,EAAE,wCAAwC;QAChD,OAAO,EAAE,CAAC;gBACN,KAAK,EAAE,gCAAgC;gBACvC,KAAK,EAAE,oBAAoB;gBAC3B,MAAM,EAAE,EAAE,SAAS,EAAE,EAAE,aAAa,EAAE,KAAK,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE;aAC7D,CAAC;KACL,EAAE;QACC,MAAM,EAAE,yCAAyC;QACjD,OAAO,EAAE,CAAC;gBACN,KAAK,EAAE,gCAAgC;gBACvC,KAAK,EAAE,oBAAoB;gBAC3B,MAAM,EAAE,EAAE,SAAS,EAAE,CAAC,EAAE,aAAa,EAAE,KAAK,EAAE,CAAC,EAAE,MAAM,EAAE,CAAC,EAAE,CAAC,yDAAyD;aACzH,CAAC;KACL,EAAE;QACC,MAAM,EAAE,wCAAwC;QAChD,OAAO,EAAE,CAAC;gBACN,KAAK,EAAE,gCAAgC;gBACvC,KAAK,EAAE,oBAAoB;gBAC3B,MAAM,EAAE,EAAE,SAAS,EAAE,EAAE,aAAa,EAAE,KAAK,EAAE,EAAE,MAAM,EAAE,CAAC,EAAE;aAC7D,EAAE;gBACC,KAAK,EAAE,wBAAwB;gBAC/B,KAAK,EAAE,MAAM,EAAE,iCAAiC;aACnD,CAAC;QACF,OAAO,EAAE,IAAI;QACb,SAAS,EAAE,CAAC;KACf,CAAC,CAAC;AAGH,IAAI,OAAO,CAAC,IAAI,CAAC,MAAM,KAAK,CAAC,EAAE;IAC3B,IAAM,IAAI,GAAG;QACT,SAAS;QACT,EAAE;QACF,yBAAyB;QACzB,EAAE;QACF,4EAA4E;QAC5E,4FAA4F;QAC5F,2CAA2C;QAC3C,EAAE;QACF,eAAe;QACf,EAAE;QACF,IAAI,CAAC,SAAS,CAAC,eAAe,EAAE,IAAI,EAAE,CAAC,CAAC;KAC3C,CAAC;IAEF,OAAO,CAAC,GAAG,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;CAChC;KAAM;IACH,IAAI;QACA,IAAM,KAAK,GAAG,IAAI,CAAC,KAAK,CAAC,EAAE,CAAC,YAAY,CAAC,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC;QACnE,QAAQ,CAAC,KAAK,CAAC,CAAC;KACnB;IAAC,OAAO,CAAC,EAAE;QACR,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;KACpB;CACJ;AAED,6DAA6D"}

package/lib/servers/model/server/api-local.js

@@ -89,10 +89,10 @@ export function runLocal(input) {
                     }
                     return [3 /*break*/, 5];
                 case 5:
-                    ConsoleLogger.log('Progress', "[" + ++progress + "/" + input.length + "] after " + PerformanceMonitor.format(now() - started) + ".");
+                    ConsoleLogger.log('Progress', "[".concat(++progress, "/").concat(input.length, "] after ").concat(PerformanceMonitor.format(now() - started), "."));
                     return [3 /*break*/, 1];
                 case 6:
-                    ConsoleLogger.log('Progress', "Done in " + PerformanceMonitor.format(now() - started) + ".");
+                    ConsoleLogger.log('Progress', "Done in ".concat(PerformanceMonitor.format(now() - started), "."));
                     StructureCache.expireAll();
                     return [2 /*return*/];
             }

package/lib/servers/model/server/api-local.js.map

@@ -1 +1 @@
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+{"version":3,"file":"api-local.js","sourceRoot":"","sources":["../../../../src/servers/model/server/api-local.ts"],"names":[],"mappings":"AAAA;;;;GAIG;;AAEH,OAAO,EAAE,IAAI,EAAE,MAAM,kCAAkC,CAAC;AACxD,OAAO,EAAE,aAAa,EAAE,MAAM,kCAAkC,CAAC;AACjE,OAAO,EAAE,GAAG,EAAE,MAAM,uBAAuB,CAAC;AAC5C,OAAO,EAAE,kBAAkB,EAAE,MAAM,uCAAuC,CAAC;AAC3E,OAAO,EAAE,gBAAgB,EAAE,uBAAuB,EAAE,MAAM,iBAAiB,CAAC;AAE5E,OAAO,EAAO,QAAQ,EAAE,UAAU,EAAE,MAAM,QAAQ,CAAC;AACnD,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,cAAc,EAAE,MAAM,qBAAqB,CAAC;AAoBrD,MAAM,UAAgB,QAAQ,CAAC,KAAiB;;;;;;oBAC5C,IAAI,CAAC,KAAK,CAAC,MAAM,EAAE;wBACf,aAAa,CAAC,KAAK,CAAC,OAAO,EAAE,UAAU,CAAC,CAAC;wBACzC,sBAAO;qBACV;oBAED,WAAuB,EAAL,eAAK,EAAL,mBAAK,EAAL,IAAK,EAAE;wBAApB;wBACK,MAAM,GAAG,QAAQ,CAAC,IAAI,CAAC,KAAG,CAAC,MAAM,CAAC,CAAC;wBACzC,UAAU,CAAC,GAAG,CAAC;4BACX,OAAO,EAAE,KAAG,CAAC,OAAO,CAAC,GAAG,CAAC,UAAA,CAAC;;gCAAI,OAAA,QAAQ,CAAC;oCACnC,OAAO,EAAE,CAAC,CAAC,KAAK;oCAChB,SAAS,EAAE,CAAC,CAAC,KAAK;oCAClB,WAAW,EAAE,CAAC,CAAC,MAAM,IAAI,EAAG;oCAC5B,SAAS,EAAE,CAAC,CAAC,SAAS;oCACtB,SAAS,EAAE,MAAA,CAAC,CAAC,SAAiB,mCAAI,IAAI,CAAC,QAAQ,EAAE;oCACjD,iBAAiB,EAAE,CAAC,CAAC,CAAC,CAAC,iBAAiB;iCAC3C,CAAC,CAAA;6BAAA,CAAC;4BACH,MAAM,EAAE,KAAG,CAAC,OAAO;gCACf,CAAC,CAAC,IAAI,uBAAuB,CAAC,KAAG,CAAC,MAAM,EAAE,KAAG,CAAC,SAAS,CAAC;gCACxD,CAAC,CAAC,IAAI,gBAAgB,CAAC,KAAG,CAAC,MAAM,CAAC;4BACtC,OAAO,EAAE;gCACL,cAAc,EAAE,KAAG,CAAC,MAAM;gCAC1B,MAAM,QAAA;gCACN,OAAO,EAAE,KAAG,CAAC,OAAO;6BACvB;yBACJ,CAAC,CAAC;qBACN;oBACD,UAAU,CAAC,IAAI,EAAE,CAAC;oBAEZ,OAAO,GAAG,GAAG,EAAE,CAAC;oBAElB,GAAG,GAAoB,UAAU,CAAC,OAAO,EAAE,CAAC;oBAC5C,GAAG,GAAG,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC;oBACzB,QAAQ,GAAG,CAAC,CAAC;;;yBACV,GAAG;;;;oBAEF,qBAAM,UAAU,CAAC,GAAG,CAAC,EAAA;;oBAArB,SAAqB,CAAC;oBACtB,GAAG,CAAC,MAAM,CAAC,GAAG,EAAE,CAAC;oBACjB,aAAa,CAAC,KAAK,CAAC,GAAG,CAAC,EAAE,EAAE,OAAO,EAAE,UAAU,CAAC,CAAC;oBAEjD,IAAI,GAAG,CAAC,OAAO,CAAC,MAAM,GAAG,CAAC;wBAAE,cAAc,CAAC,SAAS,EAAE,CAAC;oBAEvD,IAAI,UAAU,CAAC,OAAO,EAAE,EAAE;wBACtB,GAAG,GAAG,UAAU,CAAC,OAAO,EAAE,CAAC;wBAC3B,IAAI,GAAG,KAAK,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,GAAG;4BAAE,cAAc,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;wBAC3D,GAAG,GAAG,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC;qBAC5B;yBAAM;wBACH,wBAAM;qBACT;;;;oBAED,aAAa,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,EAAE,GAAC,CAAC,CAAC;oBAEjC,IAAI,UAAU,CAAC,OAAO,EAAE,EAAE;wBACtB,GAAG,GAAG,UAAU,CAAC,OAAO,EAAE,CAAC;wBAC3B,IAAI,GAAG,KAAK,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,GAAG;4BAAE,cAAc,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;wBAC3D,GAAG,GAAG,GAAG,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC;qBAC5B;yBAAM;wBACH,wBAAM;qBACT;;;oBAEL,aAAa,CAAC,GAAG,CAAC,UAAU,EAAE,WAAI,EAAE,QAAQ,cAAI,KAAK,CAAC,MAAM,qBAAW,kBAAkB,CAAC,MAAM,CAAC,GAAG,EAAE,GAAG,OAAO,CAAC,MAAG,CAAC,CAAC;;;oBAG1H,aAAa,CAAC,GAAG,CAAC,UAAU,EAAE,kBAAW,kBAAkB,CAAC,MAAM,CAAC,GAAG,EAAE,GAAG,OAAO,CAAC,MAAG,CAAC,CAAC;oBACxF,cAAc,CAAC,SAAS,EAAE,CAAC;;;;;CAC9B"}

package/lib/servers/model/server/api-schema.js

@@ -42,7 +42,7 @@ function getPaths() {
     var ret = {};
     for (var _i = 0, QueryList_1 = QueryList; _i < QueryList_1.length; _i++) {
         var _a = QueryList_1[_i], name_1 = _a.name, definition = _a.definition;
-        ret[ServerConfig.apiPrefix + "/v1/{id}/" + name_1] = getQueryInfo(definition);
+        ret["".concat(ServerConfig.apiPrefix, "/v1/{id}/").concat(name_1)] = getQueryInfo(definition);
     }
     var queryManySummary = 'Executes multiple queries at the same time and writes them as separate data blocks.';
     var queryManyExample = {
@@ -53,7 +53,7 @@ function getPaths() {
         encoding: 'cif',
         asTarGz: false
     };
-    ret[ServerConfig.apiPrefix + "/v1/query-many"] = {
+    ret["".concat(ServerConfig.apiPrefix, "/v1/query-many")] = {
         get: {
             tags: ['General'],
             summary: queryManySummary,