npm - molstar - Versions diffs - 2.3.3 → 2.3.8 - Mend

molstar 2.3.3 → 2.3.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1829) hide show

package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/representation.d.ts CHANGED Viewed

@@ -15,12 +15,15 @@ export declare const CrossLinkRestraintCylinderParams: {
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     dashScale: PD.Numeric;
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -28,7 +31,7 @@ export declare const CrossLinkRestraintCylinderParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type CrossLinkRestraintCylinderParams = typeof CrossLinkRestraintCylinderParams;
 export declare function CrossLinkRestraintVisual(materialId: number): ComplexVisual<CrossLinkRestraintCylinderParams>;
@@ -37,12 +40,15 @@ export declare const CrossLinkRestraintParams: {
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     dashScale: PD.Numeric;
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -50,7 +56,7 @@ export declare const CrossLinkRestraintParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type CrossLinkRestraintParams = typeof CrossLinkRestraintParams;
 export declare function getCrossLinkRestraintParams(ctx: ThemeRegistryContext, structure: Structure): {
@@ -58,12 +64,15 @@ export declare function getCrossLinkRestraintParams(ctx: ThemeRegistryContext, s
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     dashScale: PD.Numeric;
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -71,7 +80,7 @@ export declare function getCrossLinkRestraintParams(ctx: ThemeRegistryContext, s
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type CrossLinkRestraintRepresentation = StructureRepresentation<CrossLinkRestraintParams>;
 export declare function CrossLinkRestraintRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, CrossLinkRestraintParams>): CrossLinkRestraintRepresentation;
@@ -80,12 +89,15 @@ export declare const CrossLinkRestraintRepresentationProvider: StructureRepresen
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCount: PD.Numeric;
     dashScale: PD.Numeric;
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     includeParent: PD.BooleanParam;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -93,5 +105,5 @@ export declare const CrossLinkRestraintRepresentationProvider: StructureRepresen
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 }, CrossLinkRestraint.Tag>;

package/lib/commonjs/mol-model-props/integrative/pair-restraints.js CHANGED Viewed

@@ -8,7 +8,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.PairRestraints = void 0;
 var emptyArray = [];
 function getPairKey(indexA, unitA, indexB, unitB) {
-    return indexA + "|" + unitA.id + "|" + indexB + "|" + unitB.id;
+    return "".concat(indexA, "|").concat(unitA.id, "|").concat(indexB, "|").concat(unitB.id);
 }
 var PairRestraints = /** @class */ (function () {
     function PairRestraints(pairs) {

package/lib/commonjs/mol-model-props/integrative/pair-restraints.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/commonjs/mol-model-props/sequence/best-database-mapping.js CHANGED Viewed

@@ -48,7 +48,7 @@ var BestDatabaseSequenceMapping;
         var dbName = data.dbName[rI];
         if (!dbName)
             return;
-        return dbName + " " + data.accession[rI] + " " + data.num[rI] + " " + data.residue[rI];
+        return "".concat(dbName, " ").concat(data.accession[rI], " ").concat(data.num[rI], " ").concat(data.residue[rI]);
     }
     BestDatabaseSequenceMapping.getLabel = getLabel;
     function fromCif(model) {

package/lib/commonjs/mol-model-props/sequence/best-database-mapping.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.d.ts CHANGED Viewed

@@ -8,34 +8,34 @@ import { ThemeDataContext } from '../../../mol-theme/theme';
 import { ParamDefinition as PD } from '../../../mol-util/param-definition';
 export declare const BestDatabaseSequenceMappingColorThemeParams: {
     palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
-        list: {
-            kind: "interpolate" | "set";
-            colors: import("../../../mol-util/color/color").ColorListEntry[];
-        };
-    }>, "colors"> | PD.NamedParams<PD.Normalize<{
         maxCount: number;
         hue: [number, number];
         chroma: [number, number];
         luminance: [number, number];
         clusteringStepCount: number;
         minSampleCount: number;
-    }>, "generate">>;
+    }>, "generate"> | PD.NamedParams<PD.Normalize<{
+        list: {
+            kind: "set" | "interpolate";
+            colors: import("../../../mol-util/color/color").ColorListEntry[];
+        };
+    }>, "colors">>;
 };
 export declare type BestDatabaseSequenceMappingColorThemeParams = typeof BestDatabaseSequenceMappingColorThemeParams;
 export declare function getBestDatabaseSequenceMappingColorThemeParams(ctx: ThemeDataContext): {
     palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
-        list: {
-            kind: "interpolate" | "set";
-            colors: import("../../../mol-util/color/color").ColorListEntry[];
-        };
-    }>, "colors"> | PD.NamedParams<PD.Normalize<{
         maxCount: number;
         hue: [number, number];
         chroma: [number, number];
         luminance: [number, number];
         clusteringStepCount: number;
         minSampleCount: number;
-    }>, "generate">>;
+    }>, "generate"> | PD.NamedParams<PD.Normalize<{
+        list: {
+            kind: "set" | "interpolate";
+            colors: import("../../../mol-util/color/color").ColorListEntry[];
+        };
+    }>, "colors">>;
 };
 export declare function BestDatabaseSequenceMappingColorTheme(ctx: ThemeDataContext, props: PD.Values<BestDatabaseSequenceMappingColorThemeParams>): ColorTheme<BestDatabaseSequenceMappingColorThemeParams>;
 export declare const BestDatabaseSequenceMappingColorThemeProvider: ColorTheme.Provider<BestDatabaseSequenceMappingColorThemeParams, 'best-sequence-database-mapping'>;

package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.js CHANGED Viewed

@@ -37,7 +37,7 @@ function BestDatabaseSequenceMappingColorTheme(ctx, props) {
             }
         }
         var l_1 = structure_1.StructureElement.Location.create(ctx.structure);
-        var palette_2 = (0, palette_1.getPalette)(globalAccessionMap.size + 1, props, { valueLabel: function (i) { return "" + i; } });
+        var palette_2 = (0, palette_1.getPalette)(globalAccessionMap.size + 1, props, { valueLabel: function (i) { return "".concat(i); } });
         var colorMap_1 = new Map();
         var getColor_1 = function (location) {
             var key = best_database_mapping_1.BestDatabaseSequenceMapping.getKey(location);

package/lib/commonjs/mol-model-props/sequence/themes/best-database-mapping.js.map CHANGED Viewed

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package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/accessible-surface-area.js CHANGED Viewed

@@ -93,14 +93,14 @@ function accessibleSurfaceAreaLabel(loci) {
         }
         if (seen_1.size === 0)
             return;
-        var residueCount = "<small>(" + seen_1.size + " " + (seen_1.size > 1 ? 'Residues sum' : 'Residue') + ")</small>";
-        return "Accessible Surface Area " + residueCount + ": " + cummulativeArea_1.toFixed(2) + " \u212B<sup>2</sup>";
+        var residueCount = "<small>(".concat(seen_1.size, " ").concat(seen_1.size > 1 ? 'Residues sum' : 'Residue', ")</small>");
+        return "Accessible Surface Area ".concat(residueCount, ": ").concat(cummulativeArea_1.toFixed(2), " \u212B<sup>2</sup>");
     }
     else if (loci.kind === 'structure-loci') {
         var accessibleSurfaceArea = accessible_surface_area_1.AccessibleSurfaceAreaProvider.get(loci.structure).value;
         if (!accessibleSurfaceArea || loci.structure.customPropertyDescriptors.hasReference(accessible_surface_area_1.AccessibleSurfaceAreaProvider.descriptor))
             return;
-        return "Accessible Surface Area <small>(Whole Structure)</small>: " + (0, array_1.arraySum)(accessibleSurfaceArea.area).toFixed(2) + " \u212B<sup>2</sup>";
+        return "Accessible Surface Area <small>(Whole Structure)</small>: ".concat((0, array_1.arraySum)(accessibleSurfaceArea.area).toFixed(2), " \u212B<sup>2</sup>");
     }
 }
 //

package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/accessible-surface-area.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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1	+ {"version":3,"file":"accessible-surface-area.js","sourceRoot":"","sources":["../../../../../../../src/mol-plugin/behavior/dynamic/custom-props/computed/accessible-surface-area.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,8CAAmD;AACnD,6EAAiF;AACjF,2GAA8I;AAE9I,kHAAiI;AACjI,mDAAyD;AACzD,uDAAyD;AACzD,6EAA4F;AAC5F,+GAAwI;AACxI,sEAAoF;AAEvE,QAAA,qBAAqB,GAAG,yBAAc,CAAC,MAAM,CAAgD;IACtG,IAAI,EAAE,uCAAuC;IAC7C,QAAQ,EAAE,cAAc;IACxB,OAAO,EAAE,EAAE,IAAI,EAAE,yBAAyB,EAAE;IAC5C,IAAI;QAAgB,wCAAqE;QAAnF;YAAA,qEAwCL;YAvCW,cAAQ,GAAG,uDAA6B,CAAA;YAExC,mBAAa,GAAG;gBACpB,KAAK,EAAE,UAAC,IAAU;oBACd,IAAI,CAAC,KAAI,CAAC,MAAM,CAAC,WAAW;wBAAE,OAAO;oBACrC,OAAO,0BAA0B,CAAC,IAAI,CAAC,CAAC;gBAC5C,CAAC;aACJ,CAAA;;QAgCL,CAAC;QA9BG,wBAAM,GAAN,UAAO,CAAgD;YACnD,IAAM,OAAO,GAAG,CACZ,IAAI,CAAC,MAAM,CAAC,UAAU,KAAK,CAAC,CAAC,UAAU;gBACvC,IAAI,CAAC,MAAM,CAAC,WAAW,KAAK,CAAC,CAAC,WAAW,CAC5C,CAAC;YACF,IAAI,CAAC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,UAAU,CAAC;YACtC,IAAI,CAAC,MAAM,CAAC,WAAW,GAAG,CAAC,CAAC,WAAW,CAAC;YACxC,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,oBAAoB,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YAC/G,OAAO,OAAO,CAAC;QACnB,CAAC;QAED,0BAAQ,GAAR;YACI,mCAAwB,CAAC,aAAa,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,CAAC;YAEjE,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YACnF,IAAI,CAAC,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,MAAM,CAAC,kBAAkB,CAAC,GAAG,CAAC,iEAAuC,CAAC,CAAC;YACzG,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,WAAW,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;YAC7D,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;YAChD,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;QACxD,CAAC;QAED,4BAAU,GAAV;YACI,mCAAwB,CAAC,gBAAgB,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,CAAC;YAEpE,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC;YAC7E,IAAI,CAAC,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,MAAM,CAAC,kBAAkB,CAAC,MAAM,CAAC,iEAAuC,CAAC,CAAC;YAC5G,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,cAAc,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;YAChE,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAC;YACnD,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,SAAS,CAAC,QAAQ,CAAC,MAAM,CAAC,YAAY,CAAC,CAAC;QAC3D,CAAC;QACL,cAAC;IAAD,CAAC,AAxCK,CAAc,yBAAc,CAAC,OAAO,EAwCzC;IACD,MAAM,EAAE,cAAM,OAAA,CAAC;QACX,UAAU,EAAE,kCAAE,CAAC,OAAO,CAAC,KAAK,CAAC;QAC7B,WAAW,EAAE,kCAAE,CAAC,OAAO,CAAC,IAAI,CAAC;KAChC,CAAC,EAHY,CAGZ;CACL,CAAC,CAAC;AAEH,EAAE;AAEF,SAAS,0BAA0B,CAAC,IAAU;IAC1C,IAAI,IAAI,CAAC,IAAI,KAAK,cAAc,EAAE;QAC9B,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;YAAE,OAAO;QAEvC,IAAM,qBAAqB,GAAG,uDAA6B,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,KAAK,CAAC;QACtF,IAAI,CAAC,qBAAqB,IAAI,IAAI,CAAC,SAAS,CAAC,yBAAyB,CAAC,YAAY,CAAC,uDAA6B,CAAC,UAAU,CAAC;YAAE,OAAO;QAE9H,IAAA,gBAAc,GAAK,IAAI,CAAC,SAAS,CAAC,IAAI,CAAC,aAAa,eAAtC,CAAuC;QACrD,IAAA,MAAI,GAAyB,qBAAqB,KAA9C,EAAE,oBAAkB,GAAK,qBAAqB,mBAA1B,CAA2B;QAC3D,IAAM,MAAI,GAAG,IAAI,GAAG,EAAU,CAAC;QAC/B,IAAI,iBAAe,GAAG,CAAC,CAAC;gCAEX,OAAO,EAAE,IAAI;YACd,IAAA,QAAQ,GAAK,IAAI,SAAT,CAAU;YAE1B,gBAAU,CAAC,OAAO,CAAC,OAAO,EAAE,UAAA,GAAG;gBAC3B,IAAM,GAAG,GAAG,oBAAkB,CAAC,gBAAc,CAAC,IAAI,EAAE,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;gBACpE,IAAI,GAAG,KAAK,CAAC,CAAC,IAAI,CAAC,MAAI,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE;oBAC9B,iBAAe,IAAI,MAAI,CAAC,GAAG,CAAC,CAAC;oBAC7B,MAAI,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC;iBACjB;YACL,CAAC,CAAC,CAAC;;QATP,KAAgC,UAAa,EAAb,KAAA,IAAI,CAAC,QAAQ,EAAb,cAAa,EAAb,IAAa;YAAlC,IAAA,WAAiB,EAAf,OAAO,aAAA,EAAE,IAAI,UAAA;oBAAb,OAAO,EAAE,IAAI;SAUzB;QACD,IAAI,MAAI,CAAC,IAAI,KAAK,CAAC;YAAE,OAAO;QAC5B,IAAM,YAAY,GAAG,kBAAW,MAAI,CAAC,IAAI,cAAI,MAAI,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC,CAAC,CAAC,SAAS,cAAW,CAAC;QAEnG,OAAO,kCAA2B,YAAY,eAAK,iBAAe,CAAC,OAAO,CAAC,CAAC,CAAC,wBAAqB,CAAC;KAEtG;SAAM,IAAI,IAAI,CAAC,IAAI,KAAK,gBAAgB,EAAE;QACvC,IAAM,qBAAqB,GAAG,uDAA6B,CAAC,GAAG,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC,KAAK,CAAC;QACtF,IAAI,CAAC,qBAAqB,IAAI,IAAI,CAAC,SAAS,CAAC,yBAAyB,CAAC,YAAY,CAAC,uDAA6B,CAAC,UAAU,CAAC;YAAE,OAAO;QAEtI,OAAO,oEAA6D,IAAA,gBAAQ,EAAC,qBAAqB,CAAC,IAAI,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,wBAAqB,CAAC;KAC5I;AACL,CAAC;AAED,EAAE;AAEF,IAAM,QAAQ,GAAG,IAAA,mDAAuB,EAAC,yBAAyB,EAAE,0BAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC;IACzF,0BAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,CAAC;QAC7B,0BAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC;YACrB,0BAAE,CAAC,MAAM,CAAC,SAAS,CAAC,UAAU,CAAC;gBAC3B,YAAY,EAAE,0BAAE,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,0BAAE,CAAC,IAAI,CAAC,iBAAiB,CAAC,EAAE,WAAW,CAAC,CAAC;gBACvE,cAAc,EAAE,sDAA4B,CAAC,QAAQ,CAAC,MAAM,EAAE;aACjE,CAAC;SACL,CAAC;KACL,CAAC;CACL,CAAC,EAAE;IACA,WAAW,EAAE,iCAAiC;IAC9C,QAAQ,EAAE,sDAA0B,CAAC,OAAO;IAC5C,sBAAsB,EAAE,UAAC,GAAG,EAAE,SAAS;QACnC,OAAO,uDAA6B,CAAC,MAAM,CAAC,GAAG,EAAE,SAAS,CAAC,CAAC;IAChE,CAAC;CACJ,CAAC,CAAC;AAEH,IAAM,YAAY,GAAG,IAAA,mDAAuB,EAAC,6BAA6B,EAAE,0BAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC;IACjG,0BAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,aAAa,CAAC;QAC7B,0BAAE,CAAC,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC;YACrB,0BAAE,CAAC,MAAM,CAAC,SAAS,CAAC,UAAU,CAAC;gBAC3B,YAAY,EAAE,0BAAE,CAAC,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,0BAAE,CAAC,IAAI,CAAC,iBAAiB,CAAC,EAAE,WAAW,CAAC,C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package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/interactions.js CHANGED Viewed

@@ -66,11 +66,11 @@ exports.Interactions = behavior_1.PluginBehavior.create({
                                         groupLabels.push((0, common_1.featureGroupLabel)(group));
                                 }
                                 if (typeLabels.length)
-                                    label.push("<small>Types</small> " + typeLabels.join(', '));
+                                    label.push("<small>Types</small> ".concat(typeLabels.join(', ')));
                                 if (groupLabels.length)
-                                    label.push("<small>Groups</small> " + groupLabels.join(', '));
+                                    label.push("<small>Groups</small> ".concat(groupLabels.join(', ')));
                                 if (label.length)
-                                    labels.push("Interaction Feature: " + label.join(' | '));
+                                    labels.push("Interaction Feature: ".concat(label.join(' | ')));
                             }
                             return labels.length ? labels.join('<br/>') : undefined;
                         default: return void 0;

package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/interactions.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"interactions.js","sourceRoot":"","sources":["../../../../../../../src/mol-plugin/behavior/dynamic/custom-props/computed/interactions.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,8CAAmD;AACnD,6EAAiF;AACjF,qFAA4F;AAE5F,sDAA0D;AAC1D,mEAA4E;AAC5E,gFAAwF;AACxF,mDAAyD;AACzD,sFAAkH;AAElH,uDAA4D;AAC5D,oGAAoH;AACpH,qGAA0H;AAE7G,QAAA,YAAY,GAAG,yBAAc,CAAC,MAAM,CAAgD;IAC7F,IAAI,EAAE,4BAA4B;IAClC,QAAQ,EAAE,cAAc;IACxB,OAAO,EAAE,EAAE,IAAI,EAAE,cAAc,EAAE;IACjC,IAAI;QAAgB,wCAAqE;QAAnF;YAAA,qEA0FL;YAzFW,cAAQ,GAAG,mCAAoB,CAAA;YAe/B,mBAAa,GAAG;gBACpB,KAAK,EAAE,UAAC,IAAU;oBACd,IAAI,CAAC,KAAI,CAAC,MAAM,CAAC,WAAW;wBAAE,OAAO,KAAK,CAAC,CAAC;oBAE5C,QAAQ,IAAI,CAAC,IAAI,EAAE;wBACf,KAAK,cAAc;4BACf,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;gCAAE,OAAO,KAAK,CAAC,CAAC;4BAE9C,IAAM,MAAM,GAAa,EAAE,CAAC;4BAC5B,IAAM,UAAU,GAAG,KAAI,CAAC,aAAa,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;4BAEtD,KAAgB,UAAU,EAAV,yBAAU,EAAV,wBAAU,EAAV,IAAU,EAAE;gCAAvB,IAAM,CAAC,mBAAA;gCACR,IAAM,YAAY,GAAG,KAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;gCAChD,IAAI,CAAC,YAAY;oCAAE,SAAS;gCAE5B,IAAM,CAAC,GAAG,0BAAgB,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;gCAC/C,IAAI,CAAC,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;oCAAE,SAAS;gCAEtC,IAAM,CAAC,GAAG,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;gCACxB,IAAI,gBAAU,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC;oCAAE,SAAS;gCAE/C,IAAM,QAAQ,GAAG,YAAY,CAAC,aAAa,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gCAC3D,IAAI,CAAC,QAAQ;oCAAE,SAAS;gCAExB,IAAM,UAAU,GAAa,EAAE,CAAC;gCAChC,IAAM,WAAW,GAAa,EAAE,CAAC;gCACjC,IAAM,KAAK,GAAa,EAAE,CAAC;gCAE3B,IAAM,GAAG,GAAG,gBAAU,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;gCAChC,IAAA,KAAK,GAAkD,QAAQ,MAA1D,EAAE,MAAM,GAA0C,QAAQ,OAAlD,EAAE,KAAwC,QAAQ,cAAb,EAAlB,OAAO,aAAA,EAAE,OAAO,aAAE,CAAc;gCACxE,KAAK,IAAI,CAAC,GAAG,OAAO,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,OAAO,CAAC,GAAG,GAAG,CAAC,CAAC,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;oCAC3D,IAAM,CAAC,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC;oCACrB,IAAM,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC;oCACtB,IAAM,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;oCACxB,IAAI,IAAI;wCAAE,UAAU,CAAC,IAAI,CAAC,IAAA,yBAAgB,EAAC,IAAI,CAAC,CAAC,CAAC;oCAClD,IAAI,KAAK;wCAAE,WAAW,CAAC,IAAI,CAAC,IAAA,0BAAiB,EAAC,KAAK,CAAC,CAAC,CAAC;iCACzD;gCAED,IAAI,UAAU,CAAC,MAAM;oCAAE,KAAK,CAAC,IAAI,CAAC,+BAAwB,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,CAAE,CAAC,CAAC;gCACnF,IAAI,WAAW,CAAC,MAAM;oCAAE,KAAK,CAAC,IAAI,CAAC,gCAAyB,WAAW,CAAC,IAAI,CAAC,IAAI,CAAC,CAAE,CAAC,CAAC;gCACtF,IAAI,KAAK,CAAC,MAAM;oCAAE,MAAM,CAAC,IAAI,CAAC,+BAAwB,KAAK,CAAC,IAAI,CAAC,KAAK,CAAC,CAAE,CAAC,CAAC;6BAC9E;4BAED,OAAO,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;wBAE5D,OAAO,CAAC,CAAC,OAAO,KAAK,CAAC,CAAC;qBAC1B;gBACL,CAAC;aACJ,CAAA;;QA0BL,CAAC;QAvFW,+BAAa,GAArB,UAAsB,SAAoB;YACtC,IAAM,UAAU,GAAgB,EAAE,CAAC;YACnC,IAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,kBAAkB,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;YAChE,IAAI,IAAI,EAAE;gBACN,IAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC;gBAClC,IAAM,UAAU,GAAG,KAAK,CAAC,MAAM,CAAC,0BAAc,CAAC,UAAU,CAAC,MAAM,CAAC,2BAAiB,CAAC,QAAQ,CAAC,SAAS,EAAE,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC;gBAC5H,KAAgB,UAAU,EAAV,yBAAU,EAAV,wBAAU,EAAV,IAAU,EAAE;oBAAvB,IAAM,CAAC,mBAAA;oBACR,IAAI,CAAC,CAAC,GAAG;wBAAE,IAAA,mBAAW,EAAC,UAAU,EAAE,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;iBAClD;aACJ;YACD,OAAO,UAAU,CAAC;QACtB,CAAC;QAoDD,wBAAM,GAAN,UAAO,CAAgD;YACnD,IAAM,OAAO,GAAG,CACZ,IAAI,CAAC,MAAM,CAAC,UAAU,KAAK,CAAC,CAAC,UAAU;gBACvC,IAAI,CAAC,MAAM,CAAC,WAAW,KAAK,CAAC,CAAC,WAAW,CAC5C,CAAC;YACF,IAAI,CAAC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,UAAU,CAAC;YACtC,IAAI,CAAC,MAAM,CAAC,WAAW,GAAG,CAAC,CAAC,WAAW,CAAC;YACxC,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,oBAAoB,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YAC/G,OAAO,OAAO,CAAC;QACnB,CAAC;QAED,0BAAQ,GAAR;YACI,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YACnF,IAAI,CAAC,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,MAAM,CAAC,kBAAkB,CAAC,GAAG,CAAC,oDAAiC,CAAC,CAAC;YACnG,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,WAAW,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;YAC7D,IAAI,CAAC,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,QAAQ,CAAC,GAAG,CAAC,iDAAkC,CAAC,CAAC;QACvF,CAAC;QAED,4BAAU,GAAV;YACI,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC;YAC7E,IAAI,CAAC,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,MAAM,CAAC,kBAAkB,CAAC,MAAM,CAAC,oDAAiC,CAAC,CAAC;YACtG,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,cAAc,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;YAChE,IAAI,CAAC,GAAG,CAAC,cAAc,CAAC,SAAS,CAAC,QAAQ,CAAC,MAAM,CAAC,iDAAkC,CAAC,CAAC;QAC1F,CAAC;QACL,cAAC;IAAD,CAAC,AA1FK,CAAc,yBAAc,CAAC,OAAO,EA0FzC;IACD,MAAM,EAAE,cAAM,OAAA,CAAC;QACX,UAAU,EAAE,kCAAE,CAAC,OAAO,CAAC,KAAK,CAAC;QAC7B,WAAW,EAAE,kCAAE,CAAC,OAAO,CAAC,IAAI,CAAC;KAChC,CAAC,EAHY,CAGZ;CACL,CAAC,CAAC"}

package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.js CHANGED Viewed

@@ -54,7 +54,7 @@ exports.ValenceModel = behavior_1.PluginBehavior.create({
                                 var idealGeometry = vm.idealGeometry[idx];
                                 var implicitH = vm.implicitH[idx];
                                 var totalH = vm.totalH[idx];
-                                labels.push("Valence Model: <small>Charge</small> " + charge + " | <small>Ideal Geometry</small> " + (0, geometry_1.geometryLabel)(idealGeometry) + " | <small>Implicit H</small> " + implicitH + " | <small>Total H</small> " + totalH);
+                                labels.push("Valence Model: <small>Charge</small> ".concat(charge, " | <small>Ideal Geometry</small> ").concat((0, geometry_1.geometryLabel)(idealGeometry), " | <small>Implicit H</small> ").concat(implicitH, " | <small>Total H</small> ").concat(totalH));
                             }
                             return labels.length ? labels.join('<br/>') : undefined;
                         default: return void 0;

package/lib/commonjs/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"valence-model.js","sourceRoot":"","sources":["../../../../../../../src/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,8CAAmD;AACnD,6EAAiF;AACjF,uFAA6F;AAE7F,mEAA4E;AAC5E,sDAA0D;AAC1D,gEAAiF;AACjF,mDAAyD;AACzD,uFAA2F;AAC3F,uDAA4D;AAE/C,QAAA,YAAY,GAAG,yBAAc,CAAC,MAAM,CAAgD;IAC7F,IAAI,EAAE,6BAA6B;IACnC,QAAQ,EAAE,cAAc;IACxB,OAAO,EAAE,EAAE,IAAI,EAAE,eAAe,EAAE;IAClC,IAAI;QAAgB,wCAAqE;QAAnF;YAAA,qEA4EL;YA3EW,cAAQ,GAAG,oCAAoB,CAAA;YAe/B,mBAAa,GAAG;gBACpB,KAAK,EAAE,UAAC,IAAU;oBACd,IAAI,CAAC,KAAI,CAAC,MAAM,CAAC,WAAW;wBAAE,OAAO,KAAK,CAAC,CAAC;oBAE5C,QAAQ,IAAI,CAAC,IAAI,EAAE;wBACf,KAAK,cAAc;4BACf,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;gCAAE,OAAO,KAAK,CAAC,CAAC;4BAE9C,IAAM,MAAM,GAAa,EAAE,CAAC;4BAC5B,IAAM,UAAU,GAAG,KAAI,CAAC,aAAa,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;4BAEtD,KAAgB,UAAU,EAAV,yBAAU,EAAV,wBAAU,EAAV,IAAU,EAAE;gCAAvB,IAAM,CAAC,mBAAA;gCACR,IAAM,YAAY,GAAG,KAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;gCAChD,IAAI,CAAC,YAAY;oCAAE,SAAS;gCAE5B,IAAM,CAAC,GAAG,4BAAgB,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;gCAC/C,IAAI,CAAC,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;oCAAE,SAAS;gCAEtC,IAAM,CAAC,GAAG,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;gCACxB,IAAI,gBAAU,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC;oCAAE,SAAS;gCAE/C,IAAM,EAAE,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gCACvC,IAAI,CAAC,EAAE;oCAAE,SAAS;gCAElB,IAAM,GAAG,GAAG,gBAAU,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;gCACxC,IAAM,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;gCAC9B,IAAM,aAAa,GAAG,EAAE,CAAC,aAAa,CAAC,GAAG,CAAC,CAAC;gCAC5C,IAAM,SAAS,GAAG,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;gCACpC,IAAM,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;gCAE9B,MAAM,CAAC,IAAI,CAAC,~~0CAAwC,~~MAAM,~~yCAAoC~~,IAAA,wBAAa,EAAC,aAAa,CAAC,~~qCAAgC~~,SAAS,~~kCAA6B~~,~~MAAQ~~,CAAC,CAAC;6BAC7M;4BAED,OAAO,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;wBAE5D,OAAO,CAAC,CAAC,OAAO,KAAK,CAAC,CAAC;qBAC1B;gBACL,CAAC;aACJ,CAAA;;QAsBL,CAAC;QAzEW,+BAAa,GAArB,UAAsB,SAAoB;YACtC,IAAM,UAAU,GAAgB,EAAE,CAAC;YACnC,IAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,kBAAkB,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;YAChE,IAAI,IAAI,EAAE;gBACN,IAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC;gBAClC,IAAM,UAAU,GAAG,KAAK,CAAC,MAAM,CAAC,0BAAc,CAAC,UAAU,CAAC,MAAM,CAAC,2BAAiB,CAAC,QAAQ,CAAC,SAAS,EAAE,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC;gBAC5H,KAAgB,UAAU,EAAV,yBAAU,EAAV,wBAAU,EAAV,IAAU,EAAE;oBAAvB,IAAM,CAAC,mBAAA;oBACR,IAAI,CAAC,CAAC,GAAG;wBAAE,IAAA,mBAAW,EAAC,UAAU,EAAE,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;iBAClD;aACJ;YACD,OAAO,UAAU,CAAC;QACtB,CAAC;QA0CD,wBAAM,GAAN,UAAO,CAAgD;YACnD,IAAM,OAAO,GAAG,CACZ,IAAI,CAAC,MAAM,CAAC,UAAU,KAAK,CAAC,CAAC,UAAU;gBACvC,IAAI,CAAC,MAAM,CAAC,WAAW,KAAK,CAAC,CAAC,WAAW,CAC5C,CAAC;YACF,IAAI,CAAC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,UAAU,CAAC;YACtC,IAAI,CAAC,MAAM,CAAC,WAAW,GAAG,CAAC,CAAC,WAAW,CAAC;YACxC,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,oBAAoB,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YAC/G,OAAO,OAAO,CAAC;QACnB,CAAC;QAED,0BAAQ,GAAR;YACI,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YACnF,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,WAAW,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;QACjE,CAAC;QAED,4BAAU,GAAV;YACI,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC;YAC7E,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,cAAc,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;QACpE,CAAC;QACL,cAAC;IAAD,CAAC,AA5EK,CAAc,yBAAc,CAAC,OAAO,EA4EzC;IACD,MAAM,EAAE,cAAM,OAAA,CAAC;QACX,UAAU,EAAE,kCAAE,CAAC,OAAO,CAAC,KAAK,CAAC;QAC7B,WAAW,EAAE,kCAAE,CAAC,OAAO,CAAC,IAAI,CAAC;KAChC,CAAC,EAHY,CAGZ;CACL,CAAC,CAAC"}
1	+ {"version":3,"file":"valence-model.js","sourceRoot":"","sources":["../../../../../../../src/mol-plugin/behavior/dynamic/custom-props/computed/valence-model.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAEH,8CAAmD;AACnD,6EAAiF;AACjF,uFAA6F;AAE7F,mEAA4E;AAC5E,sDAA0D;AAC1D,gEAAiF;AACjF,mDAAyD;AACzD,uFAA2F;AAC3F,uDAA4D;AAE/C,QAAA,YAAY,GAAG,yBAAc,CAAC,MAAM,CAAgD;IAC7F,IAAI,EAAE,6BAA6B;IACnC,QAAQ,EAAE,cAAc;IACxB,OAAO,EAAE,EAAE,IAAI,EAAE,eAAe,EAAE;IAClC,IAAI;QAAgB,wCAAqE;QAAnF;YAAA,qEA4EL;YA3EW,cAAQ,GAAG,oCAAoB,CAAA;YAe/B,mBAAa,GAAG;gBACpB,KAAK,EAAE,UAAC,IAAU;oBACd,IAAI,CAAC,KAAI,CAAC,MAAM,CAAC,WAAW;wBAAE,OAAO,KAAK,CAAC,CAAC;oBAE5C,QAAQ,IAAI,CAAC,IAAI,EAAE;wBACf,KAAK,cAAc;4BACf,IAAI,IAAI,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;gCAAE,OAAO,KAAK,CAAC,CAAC;4BAE9C,IAAM,MAAM,GAAa,EAAE,CAAC;4BAC5B,IAAM,UAAU,GAAG,KAAI,CAAC,aAAa,CAAC,IAAI,CAAC,SAAS,CAAC,CAAC;4BAEtD,KAAgB,UAAU,EAAV,yBAAU,EAAV,wBAAU,EAAV,IAAU,EAAE;gCAAvB,IAAM,CAAC,mBAAA;gCACR,IAAM,YAAY,GAAG,KAAI,CAAC,QAAQ,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,KAAK,CAAC;gCAChD,IAAI,CAAC,YAAY;oCAAE,SAAS;gCAE5B,IAAM,CAAC,GAAG,4BAAgB,CAAC,IAAI,CAAC,KAAK,CAAC,IAAI,EAAE,CAAC,CAAC,CAAC;gCAC/C,IAAI,CAAC,CAAC,QAAQ,CAAC,MAAM,KAAK,CAAC;oCAAE,SAAS;gCAEtC,IAAM,CAAC,GAAG,CAAC,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC;gCACxB,IAAI,gBAAU,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,CAAC,KAAK,CAAC;oCAAE,SAAS;gCAE/C,IAAM,EAAE,GAAG,YAAY,CAAC,GAAG,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gCACvC,IAAI,CAAC,EAAE;oCAAE,SAAS;gCAElB,IAAM,GAAG,GAAG,gBAAU,CAAC,KAAK,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;gCACxC,IAAM,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;gCAC9B,IAAM,aAAa,GAAG,EAAE,CAAC,aAAa,CAAC,GAAG,CAAC,CAAC;gCAC5C,IAAM,SAAS,GAAG,EAAE,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC;gCACpC,IAAM,MAAM,GAAG,EAAE,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC;gCAE9B,MAAM,CAAC,IAAI,CAAC,+CAAwC,MAAM,8CAAoC,IAAA,wBAAa,EAAC,aAAa,CAAC,0CAAgC,SAAS,uCAA6B,MAAM,CAAE,CAAC,CAAC;6BAC7M;4BAED,OAAO,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC;wBAE5D,OAAO,CAAC,CAAC,OAAO,KAAK,CAAC,CAAC;qBAC1B;gBACL,CAAC;aACJ,CAAA;;QAsBL,CAAC;QAzEW,+BAAa,GAArB,UAAsB,SAAoB;YACtC,IAAM,UAAU,GAAgB,EAAE,CAAC;YACnC,IAAM,IAAI,GAAG,IAAI,CAAC,GAAG,CAAC,OAAO,CAAC,kBAAkB,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;YAChE,IAAI,IAAI,EAAE;gBACN,IAAM,KAAK,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,IAAI,CAAC;gBAClC,IAAM,UAAU,GAAG,KAAK,CAAC,MAAM,CAAC,0BAAc,CAAC,UAAU,CAAC,MAAM,CAAC,2BAAiB,CAAC,QAAQ,CAAC,SAAS,EAAE,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,CAAC,CAAC;gBAC5H,KAAgB,UAAU,EAAV,yBAAU,EAAV,wBAAU,EAAV,IAAU,EAAE;oBAAvB,IAAM,CAAC,mBAAA;oBACR,IAAI,CAAC,CAAC,GAAG;wBAAE,IAAA,mBAAW,EAAC,UAAU,EAAE,CAAC,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;iBAClD;aACJ;YACD,OAAO,UAAU,CAAC;QACtB,CAAC;QA0CD,wBAAM,GAAN,UAAO,CAAgD;YACnD,IAAM,OAAO,GAAG,CACZ,IAAI,CAAC,MAAM,CAAC,UAAU,KAAK,CAAC,CAAC,UAAU;gBACvC,IAAI,CAAC,MAAM,CAAC,WAAW,KAAK,CAAC,CAAC,WAAW,CAC5C,CAAC;YACF,IAAI,CAAC,MAAM,CAAC,UAAU,GAAG,CAAC,CAAC,UAAU,CAAC;YACtC,IAAI,CAAC,MAAM,CAAC,WAAW,GAAG,CAAC,CAAC,WAAW,CAAC;YACxC,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,oBAAoB,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YAC/G,OAAO,OAAO,CAAC;QACnB,CAAC;QAED,0BAAQ,GAAR;YACI,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,QAAQ,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC;YACnF,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,WAAW,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;QACjE,CAAC;QAED,4BAAU,GAAV;YACI,IAAI,CAAC,GAAG,CAAC,yBAAyB,CAAC,UAAU,CAAC,IAAI,CAAC,QAAQ,CAAC,UAAU,CAAC,IAAI,CAAC,CAAC;YAC7E,IAAI,CAAC,GAAG,CAAC,QAAQ,CAAC,UAAU,CAAC,cAAc,CAAC,IAAI,CAAC,aAAa,CAAC,CAAC;QACpE,CAAC;QACL,cAAC;IAAD,CAAC,AA5EK,CAAc,yBAAc,CAAC,OAAO,EA4EzC;IACD,MAAM,EAAE,cAAM,OAAA,CAAC;QACX,UAAU,EAAE,kCAAE,CAAC,OAAO,CAAC,KAAK,CAAC;QAC7B,WAAW,EAAE,kCAAE,CAAC,OAAO,CAAC,IAAI,CAAC;KAChC,CAAC,EAHY,CAGZ;CACL,CAAC,CAAC"}

package/lib/commonjs/mol-plugin/behavior/dynamic/representation.d.ts CHANGED Viewed

@@ -12,7 +12,8 @@ export declare const HighlightLoci: import("../../../mol-state/transformer").Sta
         hoverHighlightOnly: Binding;
         hoverHighlightOnlyExtend: Binding;
     }>;
-    ignore: PD.Value<("volume-loci" | "isosurface-loci" | "empty-loci" | "cell-loci" | "every-loci" | "element-loci" | "structure-loci" | "bond-loci" | "data-loci" | "shape-loci" | "group-loci")[]>;
+    ignore: PD.Value<("element-loci" | "structure-loci" | "bond-loci" | "volume-loci" | "isosurface-loci" | "cell-loci" | "shape-loci" | "group-loci" | "every-loci" | "empty-loci" | "data-loci")[]>;
+    preferAtoms: PD.BooleanParam;
     mark: PD.BooleanParam;
 }>>;
 export declare const SelectLoci: import("../../../mol-state/transformer").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, PD.Values<{
@@ -24,7 +25,8 @@ export declare const SelectLoci: import("../../../mol-state/transformer").StateT
         clickDeselect: Binding;
         clickDeselectAllOnEmpty: Binding;
     }>;
-    ignore: PD.Value<("volume-loci" | "isosurface-loci" | "empty-loci" | "cell-loci" | "every-loci" | "element-loci" | "structure-loci" | "bond-loci" | "data-loci" | "shape-loci" | "group-loci")[]>;
+    ignore: PD.Value<("element-loci" | "structure-loci" | "bond-loci" | "volume-loci" | "isosurface-loci" | "cell-loci" | "shape-loci" | "group-loci" | "every-loci" | "empty-loci" | "data-loci")[]>;
+    preferAtoms: PD.BooleanParam;
     mark: PD.BooleanParam;
 }>>;
 export declare const DefaultLociLabelProvider: import("../../../mol-state/transformer").StateTransformer<PluginBehavior.Category, PluginBehavior.Behavior, unknown>;

package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js CHANGED Viewed

@@ -31,6 +31,7 @@ var DefaultHighlightLociBindings = {
 var HighlightLociParams = {
     bindings: param_definition_1.ParamDefinition.Value(DefaultHighlightLociBindings, { isHidden: true }),
     ignore: param_definition_1.ParamDefinition.Value([], { isHidden: true }),
+    preferAtoms: param_definition_1.ParamDefinition.Boolean(false, { description: 'Always prefer atoms over bonds' }),
     mark: param_definition_1.ParamDefinition.Boolean(true)
 };
 exports.HighlightLoci = behavior_1.PluginBehavior.create({
@@ -47,6 +48,11 @@ exports.HighlightLoci = behavior_1.PluginBehavior.create({
             };
             return _this;
         }
+        class_1.prototype.getLoci = function (loci) {
+            return this.params.preferAtoms && structure_1.Bond.isLoci(loci) && loci.bonds.length === 2
+                ? structure_1.Bond.toFirstStructureElementLoci(loci)
+                : loci;
+        };
         class_1.prototype.register = function () {
             var _this = this;
             this.subscribeObservable(this.ctx.behaviors.interaction.hover, function (_a) {
@@ -54,19 +60,20 @@ exports.HighlightLoci = behavior_1.PluginBehavior.create({
                 var current = _a.current, buttons = _a.buttons, modifiers = _a.modifiers;
                 if (!_this.ctx.canvas3d || _this.ctx.isBusy)
                     return;
-                if (((_b = _this.params.ignore) === null || _b === void 0 ? void 0 : _b.indexOf(current.loci.kind)) >= 0) {
+                var loci = _this.getLoci(current.loci);
+                if (((_b = _this.params.ignore) === null || _b === void 0 ? void 0 : _b.indexOf(loci.kind)) >= 0) {
                     _this.ctx.managers.interactivity.lociHighlights.highlightOnly({ repr: current.repr, loci: loci_1.EmptyLoci });
                     return;
                 }
                 var matched = false;
                 if (binding_1.Binding.match(_this.params.bindings.hoverHighlightOnly, buttons, modifiers)) {
                     // remove repr to highlight loci everywhere on hover
-                    _this.ctx.managers.interactivity.lociHighlights.highlightOnly({ loci: current.loci });
+                    _this.ctx.managers.interactivity.lociHighlights.highlightOnly({ loci: loci });
                     matched = true;
                 }
                 if (binding_1.Binding.match(_this.params.bindings.hoverHighlightOnlyExtend, buttons, modifiers)) {
                     // remove repr to highlight loci everywhere on hover
-                    _this.ctx.managers.interactivity.lociHighlights.highlightOnlyExtend({ loci: current.loci });
+                    _this.ctx.managers.interactivity.lociHighlights.highlightOnlyExtend({ loci: loci });
                     matched = true;
                 }
                 if (!matched) {
@@ -95,6 +102,7 @@ var DefaultSelectLociBindings = {
 var SelectLociParams = {
     bindings: param_definition_1.ParamDefinition.Value(DefaultSelectLociBindings, { isHidden: true }),
     ignore: param_definition_1.ParamDefinition.Value([], { isHidden: true }),
+    preferAtoms: param_definition_1.ParamDefinition.Boolean(false, { description: 'Always prefer atoms over bonds' }),
     mark: param_definition_1.ParamDefinition.Boolean(true)
 };
 exports.SelectLoci = behavior_1.PluginBehavior.create({
@@ -112,6 +120,11 @@ exports.SelectLoci = behavior_1.PluginBehavior.create({
             _this.spine = new spine_1.StateTreeSpine.Impl(ctx.state.data.cells);
             return _this;
         }
+        class_2.prototype.getLoci = function (loci) {
+            return this.params.preferAtoms && structure_1.Bond.isLoci(loci) && loci.bonds.length === 2
+                ? structure_1.Bond.toFirstStructureElementLoci(loci)
+                : loci;
+        };
         class_2.prototype.applySelectMark = function (ref, clear) {
             var cell = this.ctx.state.data.cells.get(ref);
             if (cell && objects_1.PluginStateObject.isRepresentation3D(cell.obj)) {
@@ -128,8 +141,8 @@ exports.SelectLoci = behavior_1.PluginBehavior.create({
         };
         class_2.prototype.register = function () {
             var _this = this;
-            var lociIsEmpty = function (current) { return loci_1.Loci.isEmpty(current.loci); };
-            var lociIsNotEmpty = function (current) { return !loci_1.Loci.isEmpty(current.loci); };
+            var lociIsEmpty = function (loci) { return loci_1.Loci.isEmpty(loci); };
+            var lociIsNotEmpty = function (loci) { return !loci_1.Loci.isEmpty(loci); };
             var actions = [
                 ['clickSelect', function (current) { return _this.ctx.managers.interactivity.lociSelects.select(current); }, lociIsNotEmpty],
                 ['clickToggle', function (current) { return _this.ctx.managers.interactivity.lociSelects.toggle(current); }, lociIsNotEmpty],
@@ -150,13 +163,14 @@ exports.SelectLoci = behavior_1.PluginBehavior.create({
                 var current = _a.current, button = _a.button, modifiers = _a.modifiers;
                 if (!_this.ctx.canvas3d || _this.ctx.isBusy || !_this.ctx.selectionMode)
                     return;
-                if (((_b = _this.params.ignore) === null || _b === void 0 ? void 0 : _b.indexOf(current.loci.kind)) >= 0)
+                var loci = _this.getLoci(current.loci);
+                if (((_b = _this.params.ignore) === null || _b === void 0 ? void 0 : _b.indexOf(loci.kind)) >= 0)
                     return;
                 // only trigger the 1st action that matches
                 for (var _i = 0, actions_1 = actions; _i < actions_1.length; _i++) {
                     var _c = actions_1[_i], binding = _c[0], action = _c[1], condition = _c[2];
-                    if (binding_1.Binding.match(_this.params.bindings[binding], button, modifiers) && (!condition || condition(current))) {
-                        action(current);
+                    if (binding_1.Binding.match(_this.params.bindings[binding], button, modifiers) && (!condition || condition(loci))) {
+                        action({ repr: current.repr, loci: loci });
                         break;
                     }
                 }

package/lib/commonjs/mol-plugin/behavior/dynamic/representation.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.d.ts CHANGED Viewed

@@ -18,7 +18,7 @@ declare const StructureFocusRepresentationParams: (plugin: PluginContext) => {
     nciParams: PD.Group<PD.Normalize<{
         [x: string]: any;
     }>>;
-    components: PD.MultiSelect<"target" | "interactions" | "surroundings">;
+    components: PD.MultiSelect<"target" | "surroundings" | "interactions">;
     excludeTargetFromSurroundings: PD.BooleanParam;
     ignoreHydrogens: PD.BooleanParam;
 };

package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js CHANGED Viewed

@@ -25,7 +25,7 @@ var StructureFocusRepresentationParams = function (plugin) {
         expandRadius: param_definition_1.ParamDefinition.Numeric(5, { min: 1, max: 10, step: 1 }),
         targetParams: param_definition_1.ParamDefinition.Group(reprParams, {
             label: 'Target',
-            customDefault: (0, structure_representation_params_1.createStructureRepresentationParams)(plugin, void 0, { type: 'ball-and-stick', size: 'physical', typeParams: { sizeFactor: 0.26, alpha: 0.51 } })
+            customDefault: (0, structure_representation_params_1.createStructureRepresentationParams)(plugin, void 0, { type: 'ball-and-stick', size: 'physical', typeParams: { sizeFactor: 0.26, alpha: 0.51, adjustCylinderLength: true } })
         }),
         surroundingsParams: param_definition_1.ParamDefinition.Group(reprParams, {
             label: 'Surroundings',
@@ -62,7 +62,7 @@ var StructureFocusRepresentationBehavior = /** @class */ (function (_super) {
         return _this;
     }
     Object.defineProperty(StructureFocusRepresentationBehavior.prototype, "surrLabel", {
-        get: function () { return "[Focus] Surroundings (" + this.params.expandRadius + " \u00C5)"; },
+        get: function () { return "[Focus] Surroundings (".concat(this.params.expandRadius, " \u00C5)"); },
         enumerable: false,
         configurable: true
     });