molstar 2.3.3 → 2.3.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1829) hide show
  1. package/LICENSE +20 -20
  2. package/README.md +176 -176
  3. package/build/viewer/embedded.html +43 -43
  4. package/build/viewer/index.html +94 -88
  5. package/build/viewer/molstar.css +1 -2
  6. package/build/viewer/molstar.js +1 -1
  7. package/lib/apps/docking-viewer/index.html +36 -36
  8. package/lib/apps/docking-viewer/index.js +1 -1
  9. package/lib/apps/docking-viewer/index.js.map +1 -1
  10. package/lib/apps/viewer/embedded.html +43 -43
  11. package/lib/apps/viewer/index.d.ts +296 -5
  12. package/lib/apps/viewer/index.html +94 -88
  13. package/lib/apps/viewer/index.js +99 -9
  14. package/lib/apps/viewer/index.js.map +1 -1
  15. package/lib/cli/chem-comp-dict/create-ions.js +1 -1
  16. package/lib/cli/chem-comp-dict/create-ions.js.map +1 -1
  17. package/lib/cli/chem-comp-dict/create-table.js +3 -3
  18. package/lib/cli/chem-comp-dict/create-table.js.map +1 -1
  19. package/lib/cli/chem-comp-dict/util.d.ts +4 -4
  20. package/lib/cli/chem-comp-dict/util.js +2 -2
  21. package/lib/cli/chem-comp-dict/util.js.map +1 -1
  22. package/lib/cli/cif2bcif/converter.js +2 -2
  23. package/lib/cli/cif2bcif/converter.js.map +1 -1
  24. package/lib/cli/cifschema/index.js +12 -12
  25. package/lib/cli/cifschema/index.js.map +1 -1
  26. package/lib/cli/cifschema/util/cif-dic.js +19 -19
  27. package/lib/cli/cifschema/util/cif-dic.js.map +1 -1
  28. package/lib/cli/cifschema/util/generate.js +21 -21
  29. package/lib/cli/cifschema/util/generate.js.map +1 -1
  30. package/lib/cli/cifschema/util/schema.js +1 -1
  31. package/lib/cli/cifschema/util/schema.js.map +1 -1
  32. package/lib/cli/lipid-params/index.js +3 -3
  33. package/lib/cli/lipid-params/index.js.map +1 -1
  34. package/lib/cli/state-docs/index.js +4 -4
  35. package/lib/cli/state-docs/index.js.map +1 -1
  36. package/lib/cli/state-docs/pd-to-md.js +10 -10
  37. package/lib/cli/state-docs/pd-to-md.js.map +1 -1
  38. package/lib/cli/structure-info/model.js +18 -18
  39. package/lib/cli/structure-info/model.js.map +1 -1
  40. package/lib/cli/structure-info/volume.js +1 -1
  41. package/lib/cli/structure-info/volume.js.map +1 -1
  42. package/lib/commonjs/apps/docking-viewer/index.js +1 -1
  43. package/lib/commonjs/apps/docking-viewer/index.js.map +1 -1
  44. package/lib/commonjs/apps/docking-viewer/viewport.d.ts +2 -2
  45. package/lib/commonjs/apps/viewer/index.d.ts +296 -5
  46. package/lib/commonjs/apps/viewer/index.js +99 -9
  47. package/lib/commonjs/apps/viewer/index.js.map +1 -1
  48. package/lib/commonjs/cli/chem-comp-dict/create-ions.js +1 -1
  49. package/lib/commonjs/cli/chem-comp-dict/create-ions.js.map +1 -1
  50. package/lib/commonjs/cli/chem-comp-dict/create-table.js +3 -3
  51. package/lib/commonjs/cli/chem-comp-dict/create-table.js.map +1 -1
  52. package/lib/commonjs/cli/chem-comp-dict/util.d.ts +6 -6
  53. package/lib/commonjs/cli/chem-comp-dict/util.js +2 -2
  54. package/lib/commonjs/cli/chem-comp-dict/util.js.map +1 -1
  55. package/lib/commonjs/cli/cif2bcif/converter.js +2 -2
  56. package/lib/commonjs/cli/cif2bcif/converter.js.map +1 -1
  57. package/lib/commonjs/cli/cif2bcif/index.js +0 -0
  58. package/lib/commonjs/cli/cifschema/index.js +12 -12
  59. package/lib/commonjs/cli/cifschema/index.js.map +1 -1
  60. package/lib/commonjs/cli/cifschema/util/cif-dic.js +19 -19
  61. package/lib/commonjs/cli/cifschema/util/cif-dic.js.map +1 -1
  62. package/lib/commonjs/cli/cifschema/util/generate.js +21 -21
  63. package/lib/commonjs/cli/cifschema/util/generate.js.map +1 -1
  64. package/lib/commonjs/cli/cifschema/util/schema.js +1 -1
  65. package/lib/commonjs/cli/cifschema/util/schema.js.map +1 -1
  66. package/lib/commonjs/cli/lipid-params/index.js +3 -3
  67. package/lib/commonjs/cli/lipid-params/index.js.map +1 -1
  68. package/lib/commonjs/cli/state-docs/index.js +4 -4
  69. package/lib/commonjs/cli/state-docs/index.js.map +1 -1
  70. package/lib/commonjs/cli/state-docs/pd-to-md.js +10 -10
  71. package/lib/commonjs/cli/state-docs/pd-to-md.js.map +1 -1
  72. package/lib/commonjs/cli/structure-info/model.js +18 -18
  73. package/lib/commonjs/cli/structure-info/model.js.map +1 -1
  74. package/lib/commonjs/cli/structure-info/volume.js +1 -1
  75. package/lib/commonjs/cli/structure-info/volume.js.map +1 -1
  76. package/lib/commonjs/examples/basic-wrapper/superposition.js +3 -3
  77. package/lib/commonjs/examples/basic-wrapper/superposition.js.map +1 -1
  78. package/lib/commonjs/examples/domain-annotation-server/mapping.js +2 -2
  79. package/lib/commonjs/examples/domain-annotation-server/mapping.js.map +1 -1
  80. package/lib/commonjs/examples/domain-annotation-server/server.js +3 -3
  81. package/lib/commonjs/examples/domain-annotation-server/server.js.map +1 -1
  82. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js +3 -3
  83. package/lib/commonjs/examples/proteopedia-wrapper/annotation.js.map +1 -1
  84. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js +1 -1
  85. package/lib/commonjs/examples/proteopedia-wrapper/helpers.js.map +1 -1
  86. package/lib/commonjs/examples/proteopedia-wrapper/index.js +2 -2
  87. package/lib/commonjs/examples/proteopedia-wrapper/index.js.map +1 -1
  88. package/lib/commonjs/examples/task.js +6 -6
  89. package/lib/commonjs/examples/task.js.map +1 -1
  90. package/lib/commonjs/extensions/alpha-orbitals/transforms.js +2 -2
  91. package/lib/commonjs/extensions/alpha-orbitals/transforms.js.map +1 -1
  92. package/lib/commonjs/extensions/anvil/behavior.d.ts +2 -2
  93. package/lib/commonjs/extensions/anvil/representation.d.ts +5 -5
  94. package/lib/commonjs/extensions/anvil/representation.js +1 -1
  95. package/lib/commonjs/extensions/anvil/representation.js.map +1 -1
  96. package/lib/commonjs/extensions/cellpack/color/generate.d.ts +1 -1
  97. package/lib/commonjs/extensions/cellpack/color/generate.js +1 -1
  98. package/lib/commonjs/extensions/cellpack/color/provided.d.ts +1 -1
  99. package/lib/commonjs/extensions/cellpack/color/provided.js +1 -1
  100. package/lib/commonjs/extensions/cellpack/curve.d.ts +2 -2
  101. package/lib/commonjs/extensions/cellpack/curve.js +2 -2
  102. package/lib/commonjs/extensions/cellpack/data.d.ts +32 -0
  103. package/lib/commonjs/extensions/cellpack/index.d.ts +1 -1
  104. package/lib/commonjs/extensions/cellpack/index.js +1 -1
  105. package/lib/commonjs/extensions/cellpack/model.d.ts +5 -3
  106. package/lib/commonjs/extensions/cellpack/model.js +203 -65
  107. package/lib/commonjs/extensions/cellpack/model.js.map +1 -1
  108. package/lib/commonjs/extensions/cellpack/preset.d.ts +2 -1
  109. package/lib/commonjs/extensions/cellpack/preset.js +12 -15
  110. package/lib/commonjs/extensions/cellpack/preset.js.map +1 -1
  111. package/lib/commonjs/extensions/cellpack/property.d.ts +1 -1
  112. package/lib/commonjs/extensions/cellpack/property.js +1 -1
  113. package/lib/commonjs/extensions/cellpack/representation.d.ts +53 -0
  114. package/lib/commonjs/extensions/cellpack/representation.js +47 -0
  115. package/lib/commonjs/extensions/cellpack/representation.js.map +1 -0
  116. package/lib/commonjs/extensions/cellpack/state.d.ts +16 -5
  117. package/lib/commonjs/extensions/cellpack/state.js +234 -27
  118. package/lib/commonjs/extensions/cellpack/state.js.map +1 -1
  119. package/lib/commonjs/extensions/cellpack/util.d.ts +3 -1
  120. package/lib/commonjs/extensions/cellpack/util.js +34 -6
  121. package/lib/commonjs/extensions/cellpack/util.js.map +1 -1
  122. package/lib/commonjs/extensions/dnatco/confal-pyramids/behavior.d.ts +1 -1
  123. package/lib/commonjs/extensions/dnatco/confal-pyramids/representation.d.ts +6 -6
  124. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js +7 -7
  125. package/lib/commonjs/extensions/dnatco/confal-pyramids/util.js.map +1 -1
  126. package/lib/commonjs/extensions/g3d/data.js +2 -2
  127. package/lib/commonjs/extensions/g3d/data.js.map +1 -1
  128. package/lib/commonjs/extensions/g3d/model.js +2 -2
  129. package/lib/commonjs/extensions/g3d/model.js.map +1 -1
  130. package/lib/commonjs/extensions/geo-export/controls.js +2 -2
  131. package/lib/commonjs/extensions/geo-export/controls.js.map +1 -1
  132. package/lib/commonjs/extensions/geo-export/glb-exporter.js +1 -1
  133. package/lib/commonjs/extensions/geo-export/glb-exporter.js.map +1 -1
  134. package/lib/commonjs/extensions/geo-export/mesh-exporter.d.ts +1 -1
  135. package/lib/commonjs/extensions/geo-export/obj-exporter.js +3 -3
  136. package/lib/commonjs/extensions/geo-export/obj-exporter.js.map +1 -1
  137. package/lib/commonjs/extensions/geo-export/stl-exporter.js +1 -1
  138. package/lib/commonjs/extensions/geo-export/stl-exporter.js.map +1 -1
  139. package/lib/commonjs/extensions/geo-export/usdz-exporter.js +5 -5
  140. package/lib/commonjs/extensions/geo-export/usdz-exporter.js.map +1 -1
  141. package/lib/commonjs/extensions/mp4-export/controls.js +1 -1
  142. package/lib/commonjs/extensions/mp4-export/controls.js.map +1 -1
  143. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js +1 -1
  144. package/lib/commonjs/extensions/pdbe/structure-quality-report/behavior.js.map +1 -1
  145. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js +1 -1
  146. package/lib/commonjs/extensions/pdbe/structure-quality-report/prop.js.map +1 -1
  147. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.d.ts +6 -6
  148. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js +3 -3
  149. package/lib/commonjs/extensions/rcsb/assembly-symmetry/behavior.js.map +1 -1
  150. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.d.ts +12 -12
  151. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js +1 -1
  152. package/lib/commonjs/extensions/rcsb/assembly-symmetry/color.js.map +1 -1
  153. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js +2 -2
  154. package/lib/commonjs/extensions/rcsb/assembly-symmetry/prop.js.map +1 -1
  155. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.d.ts +1 -1
  156. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js +7 -7
  157. package/lib/commonjs/extensions/rcsb/assembly-symmetry/representation.js.map +1 -1
  158. package/lib/commonjs/extensions/rcsb/validation-report/behavior.d.ts +3 -3
  159. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js +11 -11
  160. package/lib/commonjs/extensions/rcsb/validation-report/behavior.js.map +1 -1
  161. package/lib/commonjs/extensions/rcsb/validation-report/prop.js +2 -2
  162. package/lib/commonjs/extensions/rcsb/validation-report/prop.js.map +1 -1
  163. package/lib/commonjs/extensions/rcsb/validation-report/representation.d.ts +25 -10
  164. package/lib/commonjs/extensions/rcsb/validation-report/representation.js +4 -4
  165. package/lib/commonjs/extensions/rcsb/validation-report/representation.js.map +1 -1
  166. package/lib/commonjs/mol-canvas3d/camera/util.d.ts +4 -3
  167. package/lib/commonjs/mol-canvas3d/camera/util.js +15 -16
  168. package/lib/commonjs/mol-canvas3d/camera/util.js.map +1 -1
  169. package/lib/commonjs/mol-canvas3d/camera.d.ts +11 -3
  170. package/lib/commonjs/mol-canvas3d/camera.js +21 -1
  171. package/lib/commonjs/mol-canvas3d/camera.js.map +1 -1
  172. package/lib/commonjs/mol-canvas3d/canvas3d.d.ts +18 -8
  173. package/lib/commonjs/mol-canvas3d/canvas3d.js +11 -5
  174. package/lib/commonjs/mol-canvas3d/canvas3d.js.map +1 -1
  175. package/lib/commonjs/mol-canvas3d/controls/trackball.d.ts +2 -2
  176. package/lib/commonjs/mol-canvas3d/helper/camera-helper.d.ts +3 -3
  177. package/lib/commonjs/mol-canvas3d/helper/handle-helper.d.ts +1 -1
  178. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js +1 -1
  179. package/lib/commonjs/mol-canvas3d/helper/handle-helper.js.map +1 -1
  180. package/lib/commonjs/mol-canvas3d/helper/interaction-events.d.ts +13 -4
  181. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js +43 -9
  182. package/lib/commonjs/mol-canvas3d/helper/interaction-events.js.map +1 -1
  183. package/lib/commonjs/mol-canvas3d/passes/draw.js +1 -0
  184. package/lib/commonjs/mol-canvas3d/passes/draw.js.map +1 -1
  185. package/lib/commonjs/mol-canvas3d/passes/image.d.ts +2 -2
  186. package/lib/commonjs/mol-canvas3d/passes/pick.d.ts +5 -2
  187. package/lib/commonjs/mol-canvas3d/passes/pick.js +17 -3
  188. package/lib/commonjs/mol-canvas3d/passes/pick.js.map +1 -1
  189. package/lib/commonjs/mol-canvas3d/passes/wboit.js +1 -1
  190. package/lib/commonjs/mol-canvas3d/passes/wboit.js.map +1 -1
  191. package/lib/commonjs/mol-canvas3d/util.js +1 -1
  192. package/lib/commonjs/mol-canvas3d/util.js.map +1 -1
  193. package/lib/commonjs/mol-data/db/table.js +1 -1
  194. package/lib/commonjs/mol-data/db/table.js.map +1 -1
  195. package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js +1 -1
  196. package/lib/commonjs/mol-data/int/_spec/sorted-ranges.spec.js.map +1 -1
  197. package/lib/commonjs/mol-data/int/impl/ordered-set.d.ts +3 -3
  198. package/lib/commonjs/mol-data/int/impl/sorted-array.d.ts +1 -1
  199. package/lib/commonjs/mol-data/int/impl/sorted-array.js +2 -2
  200. package/lib/commonjs/mol-data/int/impl/sorted-array.js.map +1 -1
  201. package/lib/commonjs/mol-data/int/tuple.js +1 -1
  202. package/lib/commonjs/mol-data/int/tuple.js.map +1 -1
  203. package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js +1 -1
  204. package/lib/commonjs/mol-data/util/_spec/interval-iterator.spec.js.map +1 -1
  205. package/lib/commonjs/mol-geo/geometry/base.d.ts +3 -3
  206. package/lib/commonjs/mol-geo/geometry/cylinders/cylinders.d.ts +1 -1
  207. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.d.ts +3 -3
  208. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js +10 -1
  209. package/lib/commonjs/mol-geo/geometry/direct-volume/direct-volume.js.map +1 -1
  210. package/lib/commonjs/mol-geo/geometry/image/image.d.ts +3 -3
  211. package/lib/commonjs/mol-geo/geometry/image/image.js +4 -1
  212. package/lib/commonjs/mol-geo/geometry/image/image.js.map +1 -1
  213. package/lib/commonjs/mol-geo/geometry/lines/lines.d.ts +1 -1
  214. package/lib/commonjs/mol-geo/geometry/lines/lines.js +1 -1
  215. package/lib/commonjs/mol-geo/geometry/lines/lines.js.map +1 -1
  216. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.d.ts +1 -1
  217. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js +19 -11
  218. package/lib/commonjs/mol-geo/geometry/mesh/builder/sheet.js.map +1 -1
  219. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.d.ts +2 -2
  220. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js +57 -15
  221. package/lib/commonjs/mol-geo/geometry/mesh/builder/tube.js.map +1 -1
  222. package/lib/commonjs/mol-geo/geometry/mesh/mesh.d.ts +1 -1
  223. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js +1 -1
  224. package/lib/commonjs/mol-geo/geometry/mesh/mesh.js.map +1 -1
  225. package/lib/commonjs/mol-geo/geometry/points/points.d.ts +3 -3
  226. package/lib/commonjs/mol-geo/geometry/points/points.js +1 -1
  227. package/lib/commonjs/mol-geo/geometry/points/points.js.map +1 -1
  228. package/lib/commonjs/mol-geo/geometry/spheres/spheres.d.ts +2 -1
  229. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js +1 -1
  230. package/lib/commonjs/mol-geo/geometry/text/font-atlas.js.map +1 -1
  231. package/lib/commonjs/mol-geo/geometry/text/text.d.ts +1 -1
  232. package/lib/commonjs/mol-geo/geometry/text/text.js +1 -1
  233. package/lib/commonjs/mol-geo/geometry/text/text.js.map +1 -1
  234. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.d.ts +1 -1
  235. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js +6 -1
  236. package/lib/commonjs/mol-geo/geometry/texture-mesh/texture-mesh.js.map +1 -1
  237. package/lib/commonjs/mol-geo/primitive/polyhedron.js +1 -1
  238. package/lib/commonjs/mol-geo/primitive/polyhedron.js.map +1 -1
  239. package/lib/commonjs/mol-gl/_spec/cylinders.spec.d.ts +6 -0
  240. package/lib/commonjs/mol-gl/_spec/cylinders.spec.js +42 -0
  241. package/lib/commonjs/mol-gl/_spec/cylinders.spec.js.map +1 -0
  242. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.d.ts +6 -0
  243. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js +42 -0
  244. package/lib/commonjs/mol-gl/_spec/direct-volume.spec.js.map +1 -0
  245. package/lib/commonjs/mol-gl/_spec/gl.d.ts +9 -0
  246. package/lib/commonjs/mol-gl/_spec/gl.js +33 -0
  247. package/lib/commonjs/mol-gl/_spec/gl.js.map +1 -0
  248. package/lib/commonjs/mol-gl/_spec/gl.shim.js +5 -5
  249. package/lib/commonjs/mol-gl/_spec/gl.shim.js.map +1 -1
  250. package/lib/commonjs/mol-gl/_spec/image.spec.d.ts +6 -0
  251. package/lib/commonjs/mol-gl/_spec/image.spec.js +42 -0
  252. package/lib/commonjs/mol-gl/_spec/image.spec.js.map +1 -0
  253. package/lib/commonjs/mol-gl/_spec/lines.spec.d.ts +6 -0
  254. package/lib/commonjs/mol-gl/_spec/lines.spec.js +42 -0
  255. package/lib/commonjs/mol-gl/_spec/lines.spec.js.map +1 -0
  256. package/lib/commonjs/mol-gl/_spec/mesh.spec.d.ts +6 -0
  257. package/lib/commonjs/mol-gl/_spec/mesh.spec.js +42 -0
  258. package/lib/commonjs/mol-gl/_spec/mesh.spec.js.map +1 -0
  259. package/lib/commonjs/mol-gl/_spec/points.spec.d.ts +6 -0
  260. package/lib/commonjs/mol-gl/_spec/points.spec.js +42 -0
  261. package/lib/commonjs/mol-gl/_spec/points.spec.js.map +1 -0
  262. package/lib/commonjs/mol-gl/_spec/renderer.spec.d.ts +7 -1
  263. package/lib/commonjs/mol-gl/_spec/renderer.spec.js +6 -44
  264. package/lib/commonjs/mol-gl/_spec/renderer.spec.js.map +1 -1
  265. package/lib/commonjs/mol-gl/_spec/spheres.spec.d.ts +6 -0
  266. package/lib/commonjs/mol-gl/_spec/spheres.spec.js +42 -0
  267. package/lib/commonjs/mol-gl/_spec/spheres.spec.js.map +1 -0
  268. package/lib/commonjs/mol-gl/_spec/text.spec.d.ts +6 -0
  269. package/lib/commonjs/mol-gl/_spec/text.spec.js +42 -0
  270. package/lib/commonjs/mol-gl/_spec/text.spec.js.map +1 -0
  271. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.d.ts +6 -0
  272. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js +42 -0
  273. package/lib/commonjs/mol-gl/_spec/texture-mesh.spec.js.map +1 -0
  274. package/lib/commonjs/mol-gl/compute/grid3d.js +3 -3
  275. package/lib/commonjs/mol-gl/compute/grid3d.js.map +1 -1
  276. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js +4 -4
  277. package/lib/commonjs/mol-gl/compute/histogram-pyramid/reduction.js.map +1 -1
  278. package/lib/commonjs/mol-gl/renderable/util.js +1 -1
  279. package/lib/commonjs/mol-gl/renderable/util.js.map +1 -1
  280. package/lib/commonjs/mol-gl/renderer.d.ts +3 -2
  281. package/lib/commonjs/mol-gl/renderer.js +3 -0
  282. package/lib/commonjs/mol-gl/renderer.js.map +1 -1
  283. package/lib/commonjs/mol-gl/scene.js +1 -1
  284. package/lib/commonjs/mol-gl/scene.js.map +1 -1
  285. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.d.ts +1 -1
  286. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js +1 -1
  287. package/lib/commonjs/mol-gl/shader/chunks/assign-material-color.glsl.js.map +1 -1
  288. package/lib/commonjs/mol-gl/shader/lines.vert.d.ts +1 -1
  289. package/lib/commonjs/mol-gl/shader/lines.vert.js +1 -1
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@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
8
8
  import { ThemeDataContext } from '../theme';
9
9
  export declare const OperatorNameColorThemeParams: {
10
10
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
11
- list: {
12
- kind: "interpolate" | "set";
13
- colors: import("../../mol-util/color/color").ColorListEntry[];
14
- };
15
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
16
11
  maxCount: number;
17
12
  hue: [number, number];
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13
  chroma: [number, number];
19
14
  luminance: [number, number];
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  clusteringStepCount: number;
21
16
  minSampleCount: number;
22
- }>, "generate">>;
17
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
18
+ list: {
19
+ kind: "set" | "interpolate";
20
+ colors: import("../../mol-util/color/color").ColorListEntry[];
21
+ };
22
+ }>, "colors">>;
23
23
  };
24
24
  export declare type OperatorNameColorThemeParams = typeof OperatorNameColorThemeParams;
25
25
  export declare function getOperatorNameColorThemeParams(ctx: ThemeDataContext): {
26
26
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
27
- list: {
28
- kind: "interpolate" | "set";
29
- colors: import("../../mol-util/color/color").ColorListEntry[];
30
- };
31
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
32
27
  maxCount: number;
33
28
  hue: [number, number];
34
29
  chroma: [number, number];
35
30
  luminance: [number, number];
36
31
  clusteringStepCount: number;
37
32
  minSampleCount: number;
38
- }>, "generate">>;
33
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
34
+ list: {
35
+ kind: "set" | "interpolate";
36
+ colors: import("../../mol-util/color/color").ColorListEntry[];
37
+ };
38
+ }>, "colors">>;
39
39
  };
40
40
  export declare function OperatorNameColorTheme(ctx: ThemeDataContext, props: PD.Values<OperatorNameColorThemeParams>): ColorTheme<OperatorNameColorThemeParams>;
41
41
  export declare const OperatorNameColorThemeProvider: ColorTheme.Provider<OperatorNameColorThemeParams, 'operator-name'>;
@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
8
8
  import { ThemeDataContext } from '../../mol-theme/theme';
9
9
  export declare const PolymerIdColorThemeParams: {
10
10
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
11
- list: {
12
- kind: "interpolate" | "set";
13
- colors: import("../../mol-util/color/color").ColorListEntry[];
14
- };
15
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
16
11
  maxCount: number;
17
12
  hue: [number, number];
18
13
  chroma: [number, number];
19
14
  luminance: [number, number];
20
15
  clusteringStepCount: number;
21
16
  minSampleCount: number;
22
- }>, "generate">>;
17
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
18
+ list: {
19
+ kind: "set" | "interpolate";
20
+ colors: import("../../mol-util/color/color").ColorListEntry[];
21
+ };
22
+ }>, "colors">>;
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  };
24
24
  export declare type PolymerIdColorThemeParams = typeof PolymerIdColorThemeParams;
25
25
  export declare function getPolymerIdColorThemeParams(ctx: ThemeDataContext): {
26
26
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
27
- list: {
28
- kind: "interpolate" | "set";
29
- colors: import("../../mol-util/color/color").ColorListEntry[];
30
- };
31
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
32
27
  maxCount: number;
33
28
  hue: [number, number];
34
29
  chroma: [number, number];
35
30
  luminance: [number, number];
36
31
  clusteringStepCount: number;
37
32
  minSampleCount: number;
38
- }>, "generate">>;
33
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
34
+ list: {
35
+ kind: "set" | "interpolate";
36
+ colors: import("../../mol-util/color/color").ColorListEntry[];
37
+ };
38
+ }>, "colors">>;
39
39
  };
40
40
  export declare function PolymerIdColorTheme(ctx: ThemeDataContext, props: PD.Values<PolymerIdColorThemeParams>): ColorTheme<PolymerIdColorThemeParams>;
41
41
  export declare const PolymerIdColorThemeProvider: ColorTheme.Provider<PolymerIdColorThemeParams, 'polymer-id'>;
@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
8
8
  import { ThemeDataContext } from '../../mol-theme/theme';
9
9
  export declare const PolymerIndexColorThemeParams: {
10
10
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
11
- list: {
12
- kind: "interpolate" | "set";
13
- colors: import("../../mol-util/color/color").ColorListEntry[];
14
- };
15
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
16
11
  maxCount: number;
17
12
  hue: [number, number];
18
13
  chroma: [number, number];
19
14
  luminance: [number, number];
20
15
  clusteringStepCount: number;
21
16
  minSampleCount: number;
22
- }>, "generate">>;
17
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
18
+ list: {
19
+ kind: "set" | "interpolate";
20
+ colors: import("../../mol-util/color/color").ColorListEntry[];
21
+ };
22
+ }>, "colors">>;
23
23
  };
24
24
  export declare type PolymerIndexColorThemeParams = typeof PolymerIndexColorThemeParams;
25
25
  export declare function getPolymerIndexColorThemeParams(ctx: ThemeDataContext): {
26
26
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
27
- list: {
28
- kind: "interpolate" | "set";
29
- colors: import("../../mol-util/color/color").ColorListEntry[];
30
- };
31
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
32
27
  maxCount: number;
33
28
  hue: [number, number];
34
29
  chroma: [number, number];
35
30
  luminance: [number, number];
36
31
  clusteringStepCount: number;
37
32
  minSampleCount: number;
38
- }>, "generate">>;
33
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
34
+ list: {
35
+ kind: "set" | "interpolate";
36
+ colors: import("../../mol-util/color/color").ColorListEntry[];
37
+ };
38
+ }>, "colors">>;
39
39
  };
40
40
  export declare type PolymerIndexColorThemeProps = PD.Values<typeof PolymerIndexColorThemeParams>;
41
41
  export declare function PolymerIndexColorTheme(ctx: ThemeDataContext, props: PD.Values<PolymerIndexColorThemeParams>): ColorTheme<PolymerIndexColorThemeParams>;
@@ -8,34 +8,34 @@ import { ParamDefinition as PD } from '../../mol-util/param-definition';
8
8
  import { ThemeDataContext } from '../../mol-theme/theme';
9
9
  export declare const UnitIndexColorThemeParams: {
10
10
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
11
- list: {
12
- kind: "interpolate" | "set";
13
- colors: import("../../mol-util/color/color").ColorListEntry[];
14
- };
15
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
16
11
  maxCount: number;
17
12
  hue: [number, number];
18
13
  chroma: [number, number];
19
14
  luminance: [number, number];
20
15
  clusteringStepCount: number;
21
16
  minSampleCount: number;
22
- }>, "generate">>;
17
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
18
+ list: {
19
+ kind: "set" | "interpolate";
20
+ colors: import("../../mol-util/color/color").ColorListEntry[];
21
+ };
22
+ }>, "colors">>;
23
23
  };
24
24
  export declare type UnitIndexColorThemeParams = typeof UnitIndexColorThemeParams;
25
25
  export declare function getUnitIndexColorThemeParams(ctx: ThemeDataContext): {
26
26
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
27
- list: {
28
- kind: "interpolate" | "set";
29
- colors: import("../../mol-util/color/color").ColorListEntry[];
30
- };
31
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
32
27
  maxCount: number;
33
28
  hue: [number, number];
34
29
  chroma: [number, number];
35
30
  luminance: [number, number];
36
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  clusteringStepCount: number;
37
32
  minSampleCount: number;
38
- }>, "generate">>;
33
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
34
+ list: {
35
+ kind: "set" | "interpolate";
36
+ colors: import("../../mol-util/color/color").ColorListEntry[];
37
+ };
38
+ }>, "colors">>;
39
39
  };
40
40
  export declare function UnitIndexColorTheme(ctx: ThemeDataContext, props: PD.Values<UnitIndexColorThemeParams>): ColorTheme<UnitIndexColorThemeParams>;
41
41
  export declare const UnitIndexColorThemeProvider: ColorTheme.Provider<UnitIndexColorThemeParams, 'unit-index'>;
@@ -56,108 +56,108 @@ declare namespace ColorTheme {
56
56
  export const BuiltIn: {
57
57
  'atom-id': Provider<{
58
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  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
59
- list: {
60
- kind: "interpolate" | "set";
61
- colors: import("../mol-util/color/color").ColorListEntry[];
62
- };
63
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
64
59
  maxCount: number;
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  hue: [number, number];
66
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  chroma: [number, number];
67
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  luminance: [number, number];
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  clusteringStepCount: number;
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  minSampleCount: number;
70
- }>, "generate">>;
65
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
66
+ list: {
67
+ kind: "set" | "interpolate";
68
+ colors: import("../mol-util/color/color").ColorListEntry[];
69
+ };
70
+ }>, "colors">>;
71
71
  }, "atom-id">;
72
72
  'carbohydrate-symbol': Provider<{}, "carbohydrate-symbol">;
73
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  'chain-id': Provider<{
74
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  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
75
- list: {
76
- kind: "interpolate" | "set";
77
- colors: import("../mol-util/color/color").ColorListEntry[];
78
- };
79
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
80
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  maxCount: number;
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76
  hue: [number, number];
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  chroma: [number, number];
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  luminance: [number, number];
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  clusteringStepCount: number;
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  minSampleCount: number;
86
- }>, "generate">>;
81
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
82
+ list: {
83
+ kind: "set" | "interpolate";
84
+ colors: import("../mol-util/color/color").ColorListEntry[];
85
+ };
86
+ }>, "colors">>;
87
87
  asymId: PD.Select<"label" | "auth">;
88
88
  }, "chain-id">;
89
89
  'element-index': Provider<{
90
90
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
91
- list: {
92
- kind: "interpolate" | "set";
93
- colors: import("../mol-util/color/color").ColorListEntry[];
94
- };
95
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
96
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  maxCount: number;
97
92
  hue: [number, number];
98
93
  chroma: [number, number];
99
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  luminance: [number, number];
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  clusteringStepCount: number;
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  minSampleCount: number;
102
- }>, "generate">>;
97
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
98
+ list: {
99
+ kind: "set" | "interpolate";
100
+ colors: import("../mol-util/color/color").ColorListEntry[];
101
+ };
102
+ }>, "colors">>;
103
103
  }, "element-index">;
104
104
  'element-symbol': Provider<{
105
- carbonColor: PD.Mapped<PD.NamedParams<PD.Normalize<{
105
+ carbonColor: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "element-symbol"> | PD.NamedParams<PD.Normalize<{
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  palette: PD.NamedParams<PD.Normalize<{
107
- list: any;
108
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
109
107
  maxCount: any;
110
108
  hue: any;
111
109
  chroma: any;
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  luminance: any;
113
111
  clusteringStepCount: any;
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  minSampleCount: any;
115
- }>, "generate">;
113
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
114
+ list: any;
115
+ }>, "colors">;
116
116
  asymId: "label" | "auth";
117
117
  }>, "chain-id"> | PD.NamedParams<PD.Normalize<{
118
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  palette: PD.NamedParams<PD.Normalize<{
119
- list: any;
120
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
121
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  maxCount: any;
122
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  hue: any;
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  chroma: any;
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  luminance: any;
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  clusteringStepCount: any;
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  minSampleCount: any;
127
- }>, "generate">;
128
- }>, "operator-name"> | PD.NamedParams<PD.Normalize<unknown>, "element-symbol">>;
125
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
126
+ list: any;
127
+ }>, "colors">;
128
+ }>, "operator-name">>;
129
129
  saturation: PD.Numeric;
130
130
  lightness: PD.Numeric;
131
131
  }, "element-symbol">;
132
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  'entity-id': Provider<{
133
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  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
134
- list: {
135
- kind: "interpolate" | "set";
136
- colors: import("../mol-util/color/color").ColorListEntry[];
137
- };
138
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
139
134
  maxCount: number;
140
135
  hue: [number, number];
141
136
  chroma: [number, number];
142
137
  luminance: [number, number];
143
138
  clusteringStepCount: number;
144
139
  minSampleCount: number;
145
- }>, "generate">>;
146
- }, "entity-id">;
147
- 'entity-source': Provider<{
148
- palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
140
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
149
141
  list: {
150
- kind: "interpolate" | "set";
142
+ kind: "set" | "interpolate";
151
143
  colors: import("../mol-util/color/color").ColorListEntry[];
152
144
  };
153
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
145
+ }>, "colors">>;
146
+ }, "entity-id">;
147
+ 'entity-source': Provider<{
148
+ palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
154
149
  maxCount: number;
155
150
  hue: [number, number];
156
151
  chroma: [number, number];
157
152
  luminance: [number, number];
158
153
  clusteringStepCount: number;
159
154
  minSampleCount: number;
160
- }>, "generate">>;
155
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
156
+ list: {
157
+ kind: "set" | "interpolate";
158
+ colors: import("../mol-util/color/color").ColorListEntry[];
159
+ };
160
+ }>, "colors">>;
161
161
  }, "entity-source">;
162
162
  hydrophobicity: Provider<{
163
163
  list: PD.ColorList;
@@ -165,34 +165,34 @@ declare namespace ColorTheme {
165
165
  }, "hydrophobicity">;
166
166
  illustrative: Provider<{
167
167
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
168
- list: {
169
- kind: "interpolate" | "set";
170
- colors: import("../mol-util/color/color").ColorListEntry[];
171
- };
172
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
173
168
  maxCount: number;
174
169
  hue: [number, number];
175
170
  chroma: [number, number];
176
171
  luminance: [number, number];
177
172
  clusteringStepCount: number;
178
173
  minSampleCount: number;
179
- }>, "generate">>;
174
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
175
+ list: {
176
+ kind: "set" | "interpolate";
177
+ colors: import("../mol-util/color/color").ColorListEntry[];
178
+ };
179
+ }>, "colors">>;
180
180
  asymId: PD.Select<"label" | "auth">;
181
181
  }, "illustrative">;
182
182
  'model-index': Provider<{
183
183
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
184
- list: {
185
- kind: "interpolate" | "set";
186
- colors: import("../mol-util/color/color").ColorListEntry[];
187
- };
188
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
189
184
  maxCount: number;
190
185
  hue: [number, number];
191
186
  chroma: [number, number];
192
187
  luminance: [number, number];
193
188
  clusteringStepCount: number;
194
189
  minSampleCount: number;
195
- }>, "generate">>;
190
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
191
+ list: {
192
+ kind: "set" | "interpolate";
193
+ colors: import("../mol-util/color/color").ColorListEntry[];
194
+ };
195
+ }>, "colors">>;
196
196
  }, "model-index">;
197
197
  'molecule-type': Provider<{
198
198
  saturation: PD.Numeric;
@@ -204,33 +204,33 @@ declare namespace ColorTheme {
204
204
  }, "occupancy">;
205
205
  'operator-hkl': Provider<{
206
206
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
207
- list: {
208
- kind: "interpolate" | "set";
209
- colors: import("../mol-util/color/color").ColorListEntry[];
210
- };
211
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
212
207
  maxCount: number;
213
208
  hue: [number, number];
214
209
  chroma: [number, number];
215
210
  luminance: [number, number];
216
211
  clusteringStepCount: number;
217
212
  minSampleCount: number;
218
- }>, "generate">>;
219
- }, "operator-hkl">;
220
- 'operator-name': Provider<{
221
- palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
213
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
222
214
  list: {
223
- kind: "interpolate" | "set";
215
+ kind: "set" | "interpolate";
224
216
  colors: import("../mol-util/color/color").ColorListEntry[];
225
217
  };
226
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
218
+ }>, "colors">>;
219
+ }, "operator-hkl">;
220
+ 'operator-name': Provider<{
221
+ palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
227
222
  maxCount: number;
228
223
  hue: [number, number];
229
224
  chroma: [number, number];
230
225
  luminance: [number, number];
231
226
  clusteringStepCount: number;
232
227
  minSampleCount: number;
233
- }>, "generate">>;
228
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
229
+ list: {
230
+ kind: "set" | "interpolate";
231
+ colors: import("../mol-util/color/color").ColorListEntry[];
232
+ };
233
+ }>, "colors">>;
234
234
  }, "operator-name">;
235
235
  'partial-charge': Provider<{
236
236
  domain: PD.Interval;
@@ -238,33 +238,33 @@ declare namespace ColorTheme {
238
238
  }, "partial-charge">;
239
239
  'polymer-id': Provider<{
240
240
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
241
- list: {
242
- kind: "interpolate" | "set";
243
- colors: import("../mol-util/color/color").ColorListEntry[];
244
- };
245
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
246
241
  maxCount: number;
247
242
  hue: [number, number];
248
243
  chroma: [number, number];
249
244
  luminance: [number, number];
250
245
  clusteringStepCount: number;
251
246
  minSampleCount: number;
252
- }>, "generate">>;
253
- }, "polymer-id">;
254
- 'polymer-index': Provider<{
255
- palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
247
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
256
248
  list: {
257
- kind: "interpolate" | "set";
249
+ kind: "set" | "interpolate";
258
250
  colors: import("../mol-util/color/color").ColorListEntry[];
259
251
  };
260
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
252
+ }>, "colors">>;
253
+ }, "polymer-id">;
254
+ 'polymer-index': Provider<{
255
+ palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
261
256
  maxCount: number;
262
257
  hue: [number, number];
263
258
  chroma: [number, number];
264
259
  luminance: [number, number];
265
260
  clusteringStepCount: number;
266
261
  minSampleCount: number;
267
- }>, "generate">>;
262
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
263
+ list: {
264
+ kind: "set" | "interpolate";
265
+ colors: import("../mol-util/color/color").ColorListEntry[];
266
+ };
267
+ }>, "colors">>;
268
268
  }, "polymer-index">;
269
269
  'residue-name': Provider<{
270
270
  saturation: PD.Numeric;
@@ -284,18 +284,18 @@ declare namespace ColorTheme {
284
284
  }, "uncertainty">;
285
285
  'unit-index': Provider<{
286
286
  palette: PD.Mapped<PD.NamedParams<PD.Normalize<{
287
- list: {
288
- kind: "interpolate" | "set";
289
- colors: import("../mol-util/color/color").ColorListEntry[];
290
- };
291
- }>, "colors"> | PD.NamedParams<PD.Normalize<{
292
287
  maxCount: number;
293
288
  hue: [number, number];
294
289
  chroma: [number, number];
295
290
  luminance: [number, number];
296
291
  clusteringStepCount: number;
297
292
  minSampleCount: number;
298
- }>, "generate">>;
293
+ }>, "generate"> | PD.NamedParams<PD.Normalize<{
294
+ list: {
295
+ kind: "set" | "interpolate";
296
+ colors: import("../mol-util/color/color").ColorListEntry[];
297
+ };
298
+ }>, "colors">>;
299
299
  }, "unit-index">;
300
300
  uniform: Provider<{
301
301
  value: PD.Color;
@@ -18,6 +18,7 @@ export declare const DefaultLabelOptions: {
18
18
  export declare type LabelOptions = typeof DefaultLabelOptions;
19
19
  export declare function lociLabel(loci: Loci, options?: Partial<LabelOptions>): string;
20
20
  export declare function structureElementStatsLabel(stats: StructureElement.Stats, options?: Partial<LabelOptions>): string;
21
+ export declare function structureElementLociLabelMany(locis: StructureElement.Loci[], options?: Partial<LabelOptions>): string;
21
22
  export declare function bondLabel(bond: Bond.Location, options?: Partial<LabelOptions>): string;
22
23
  export declare function bundleLabel(bundle: Loci.Bundle<any>, options?: Partial<LabelOptions>): string;
23
24
  export declare function _bundleLabel(bundle: Loci.Bundle<any>, options: LabelOptions): string;