npm - molstar - Versions diffs - 2.3.3 → 2.3.8 - Mend

molstar 2.3.3 → 2.3.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1829) hide show

package/lib/commonjs/mol-model/structure/model/properties/utils/residue-set.js CHANGED Viewed

@@ -61,7 +61,7 @@ var ResidueSet = /** @class */ (function () {
     ResidueSet.getLabel = function (entry, checkOperator) {
         var _a;
         if (checkOperator === void 0) { checkOperator = false; }
-        return entry.label_asym_id + " " + entry.label_comp_id + " " + entry.label_seq_id + ":" + entry.ins_code + ":" + entry.label_alt_id + (checkOperator ? ' ' + ((_a = entry.operator_name) !== null && _a !== void 0 ? _a : '1_555') : '');
+        return "".concat(entry.label_asym_id, " ").concat(entry.label_comp_id, " ").concat(entry.label_seq_id, ":").concat(entry.ins_code, ":").concat(entry.label_alt_id).concat(checkOperator ? ' ' + ((_a = entry.operator_name) !== null && _a !== void 0 ? _a : '1_555') : '');
     };
     ResidueSet.getEntryFromLocation = function (loc) {
         var _a;

package/lib/commonjs/mol-model/structure/model/properties/utils/residue-set.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"residue-set.js","sourceRoot":"","sources":["../../../../../../../src/mol-model/structure/model/properties/utils/residue-set.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAGH,4DAAoE;AAYpE;IA6EI,oBAAY,OAAqC;;QA5EzC,UAAK,GAAG,IAAI,GAAG,EAA0C,CAAC;QAC1D,kBAAa,GAAY,KAAK,CAAC;QA4EnC,IAAI,CAAC,aAAa,GAAG,MAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,aAAa,mCAAI,KAAK,CAAC;IACzD,CAAC;IA3ED,wBAAG,GAAH,UAAI,KAAsB;QACtB,IAAI,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC;QAC/C,IAAI,CAAC,IAAI,EAAE;YACP,IAAI,GAAG,IAAI,GAAG,EAAE,CAAC;YACjB,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,KAAK,CAAC,aAAa,EAAE,IAAI,CAAC,CAAC;SAC7C;QAED,IAAI,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,YAAY,CAAC,CAAC;QAC3C,IAAI,CAAC,OAAO,EAAE;YACV,OAAO,GAAG,EAAE,CAAC;YACb,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC;SACzC;QAED,IAAM,MAAM,GAAG,IAAI,CAAC,KAAK,CAAC,KAAK,EAAE,OAAO,CAAC,CAAC;QAC1C,IAAI,CAAC,MAAM,EAAE;YACT,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC;YACpB,OAAO,IAAI,CAAC;SACf;QAED,OAAO,KAAK,CAAC;IACjB,CAAC;IAED,mCAAc,GAAd,UAAe,OAAe;QAC1B,OAAO,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC,CAAC;IACnC,CAAC;IAED,wBAAG,GAAH,UAAI,GAA8B;;QAC9B,IAAM,OAAO,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC;QAC9B,IAAI,CAAC,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,OAAO,CAAC;YAAE,OAAO;QACrC,IAAM,IAAI,GAAG,IAAI,CAAC,KAAK,CAAC,GAAG,CAAC,OAAO,CAAE,CAAC;QACtC,IAAM,MAAM,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;QAC5B,IAAI,CAAC,IAAI,CAAC,GAAG,CAAC,MAAM,CAAC;YAAE,OAAO;QAC9B,IAAM,OAAO,GAAG,IAAI,CAAC,GAAG,CAAC,MAAM,CAAE,CAAC;QAElC,IAAM,OAAO,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC;QAC9B,IAAM,MAAM,GAAG,OAAO,CAAC,GAAG,CAAC,CAAC;QAC5B,IAAM,QAAQ,GAAG,SAAS,CAAC,GAAG,CAAC,CAAC;QAChC,IAAM,OAAO,GAAG,MAAA,QAAQ,CAAC,GAAG,CAAC,mCAAI,OAAO,CAAC;QAEzC,KAAgB,UAAO,EAAP,mBAAO,EAAP,qBAAO,EAAP,IAAO,EAAE;YAApB,IAAM,CAAC,gBAAA;YACR,IAAI,CAAC,CAAC,aAAa,KAAK,OAAO,IAAI,CAAC,CAAC,YAAY,KAAK,MAAM,IAAI,CAAC,CAAC,QAAQ,KAAK,QAAQ;gBAAE,SAAS;YAClG,IAAI,IAAI,CAAC,aAAa,IAAI,CAAC,MAAA,CAAC,CAAC,aAAa,mCAAI,OAAO,CAAC,KAAK,OAAO;gBAAE,SAAS;YAE7E,OAAO,CAAC,CAAC;SACZ;IACL,CAAC;IAEM,mBAAQ,GAAf,UAAgB,KAAsB,EAAE,aAAqB;;QAArB,8BAAA,EAAA,qBAAqB;QACzD,OAAO,UAAG,KAAK,CAAC,aAAa,cAAI,KAAK,CAAC,aAAa,cAAI,KAAK,CAAC,YAAY,cAAI,KAAK,CAAC,QAAQ,cAAI,KAAK,CAAC,YAAY,SAAG,aAAa,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,MAAA,KAAK,CAAC,aAAa,mCAAI,OAAO,CAAC,CAAC,CAAC,CAAC,EAAE,CAAE,CAAC;IACvL,CAAC;IAEM,+BAAoB,GAA3B,UAA4B,GAA8B;;QACtD,OAAO;YACH,aAAa,EAAE,QAAQ,CAAC,GAAG,CAAC;YAC5B,aAAa,EAAE,QAAQ,CAAC,GAAG,CAAC;YAC5B,YAAY,EAAE,OAAO,CAAC,GAAG,CAAC;YAC1B,YAAY,EAAE,OAAO,CAAC,GAAG,CAAC;YAC1B,QAAQ,EAAE,SAAS,CAAC,GAAG,CAAC;YACxB,aAAa,EAAE,MAAA,QAAQ,CAAC,GAAG,CAAC,mCAAI,OAAO;SAC1C,CAAC;IACN,CAAC;IAEO,0BAAK,GAAb,UAAc,KAAsB,EAAE,EAAqB;;QACvD,KAAgB,UAAE,EAAF,SAAE,EAAF,gBAAE,EAAF,IAAE,EAAE;YAAf,IAAM,CAAC,WAAA;YACR,IAAI,CAAC,CAAC,aAAa,KAAK,KAAK,CAAC,aAAa,IAAI,CAAC,CAAC,YAAY,KAAK,KAAK,CAAC,YAAY,IAAI,CAAC,CAAC,QAAQ,KAAK,KAAK,CAAC,QAAQ;gBAAE,SAAS;YAChI,IAAI,IAAI,CAAC,aAAa,IAAI,CAAC,MAAA,CAAC,CAAC,aAAa,mCAAI,OAAO,CAAC,KAAK,CAAC,MAAA,KAAK,CAAC,aAAa,mCAAI,OAAO,CAAC;gBAAE,SAAS;YAEtG,OAAO,IAAI,CAAC;SACf;QAED,OAAO,KAAK,CAAC;IACjB,CAAC;IAKL,iBAAC;AAAD,CAAC,AAhFD,IAgFC;AAhFY,gCAAU;AAkFvB,IAAM,QAAQ,GAAG,gCAAmB,CAAC,KAAK,CAAC,aAAa,CAAC;AACzD,IAAM,OAAO,GAAG,gCAAmB,CAAC,OAAO,CAAC,YAAY,CAAC;AACzD,IAAM,QAAQ,GAAG,gCAAmB,CAAC,IAAI,CAAC,aAAa,CAAC;AACxD,IAAM,OAAO,GAAG,gCAAmB,CAAC,IAAI,CAAC,YAAY,CAAC;AACtD,IAAM,SAAS,GAAG,gCAAmB,CAAC,OAAO,CAAC,iBAAiB,CAAC;AAChE,IAAM,QAAQ,GAAG,gCAAmB,CAAC,IAAI,CAAC,aAAa,CAAC"}

package/lib/commonjs/mol-model/structure/query/context.js CHANGED Viewed

@@ -72,7 +72,7 @@ var QueryContext = /** @class */ (function () {
         if (this.timeoutMs === 0)
             return;
         if ((0, now_1.now)() - this.timeCreated > this.timeoutMs) {
-            throw new Error("The query took too long to execute (> " + this.timeoutMs / 1000 + "s).");
+            throw new Error("The query took too long to execute (> ".concat(this.timeoutMs / 1000, "s)."));
         }
     };
     QueryContext.prototype.tryGetCurrentSelection = function () {

package/lib/commonjs/mol-model/structure/query/context.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/commonjs/mol-model/structure/structure/carbohydrates/compute.js CHANGED Viewed

@@ -125,7 +125,7 @@ function computeCarbohydrates(structure) {
     var partialElements = [];
     var elementsWithRingMap = new Map();
     function ringElementKey(residueIndex, unitId, altId) {
-        return residueIndex + "|" + unitId + "|" + altId;
+        return "".concat(residueIndex, "|").concat(unitId, "|").concat(altId);
     }
     function addRingElement(key, elementIndex) {
         if (elementsWithRingMap.has(key))

package/lib/commonjs/mol-model/structure/structure/carbohydrates/compute.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-model/structure/structure/element/loci.d.ts CHANGED Viewed

@@ -65,5 +65,6 @@ export declare namespace Loci {
     function getBoundary(loci: Loci, transform?: Mat4): Boundary;
     function toPositionsArray(loci: Loci, positions: NumberArray, offset?: number): NumberArray;
     function getPrincipalAxes(loci: Loci): PrincipalAxes;
+    function getPrincipalAxesMany(locis: Loci[]): PrincipalAxes;
     function toExpression(loci: Loci): Expression;
 }

package/lib/commonjs/mol-model/structure/structure/element/loci.js CHANGED Viewed

@@ -415,7 +415,7 @@ exports.Loci = Loci;
     }
     Loci.extendToWholeChains = extendToWholeChains;
     function entityModelKey(location) {
-        return location.unit.model.id + "|" + properties_1.StructureProperties.entity.id(location);
+        return "".concat(location.unit.model.id, "|").concat(properties_1.StructureProperties.entity.id(location));
     }
     function extendToWholeEntities(loci) {
         var elements = [];
@@ -575,6 +575,20 @@ exports.Loci = Loci;
         return principal_axes_1.PrincipalAxes.ofPositions(positions);
     }
     Loci.getPrincipalAxes = getPrincipalAxes;
+    function getPrincipalAxesMany(locis) {
+        var elementCount = 0;
+        locis.forEach(function (l) {
+            elementCount += size(l);
+        });
+        var positions = new Float32Array(3 * elementCount);
+        var offset = 0;
+        locis.forEach(function (l) {
+            toPositionsArray(l, positions, offset);
+            offset += size(l) * 3;
+        });
+        return principal_axes_1.PrincipalAxes.ofPositions(positions);
+    }
+    Loci.getPrincipalAxesMany = getPrincipalAxesMany;
     function sourceIndex(unit, element) {
         return unit_1.Unit.isAtomic(unit)
             ? unit.model.atomicHierarchy.atomSourceIndex.value(element)
@@ -617,7 +631,7 @@ exports.Loci = Loci;
         for (var i = 0, il = opData.length; i < il; ++i) {
             var d = opData[i];
             var hash = (0, util_1.hash2)((0, util_1.hashFnv32a)(d.atom.ranges), (0, util_1.hashFnv32a)(d.atom.set));
-            var key = hash + "|" + (d.entity ? (d.entity.modelLabel + d.entity.modelIndex) : '');
+            var key = "".concat(hash, "|").concat(d.entity ? (d.entity.modelLabel + d.entity.modelIndex) : '');
             if (opGroups.has(key)) {
                 (_a = opGroups.get(key).chain.opName).push.apply(_a, d.chain.opName);
             }

package/lib/commonjs/mol-model/structure/structure/element/loci.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-model/structure/structure/element/util.js CHANGED Viewed

@@ -11,7 +11,7 @@ var unit_1 = require("../unit");
 var properties_1 = require("../properties");
 function property(p) { return p; }
 exports.property = property;
-function _wrongUnitKind(kind) { throw new Error("Property only available for " + kind + " models."); }
+function _wrongUnitKind(kind) { throw new Error("Property only available for ".concat(kind, " models.")); }
 function atomicProperty(p) {
     return property(function (l) { return unit_1.Unit.isAtomic(l.unit) ? p(l) : _wrongUnitKind('atomic'); });
 }

package/lib/commonjs/mol-model/structure/structure/element/util.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"util.js","sourceRoot":"","sources":["../../../../../../src/mol-model/structure/structure/element/util.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;AAIH,gCAA+B;AAE/B,4CAAoD;AAWpD,SAAgB,QAAQ,CAAI,CAAc,IAAI,OAAO,CAAC,CAAC,CAAC,CAAC;AAAzD,4BAAyD;AAEzD,SAAS,cAAc,CAAC,IAAY,IAAI,MAAM,IAAI,KAAK,CAAC,~~iCAA~~+B,IAAI,aAAU,CAAC,CAAC,CAAC,CAAC;AACzG,SAAgB,cAAc,CAAI,CAAyC;IACvE,OAAO,QAAQ,CAAC,UAAA,CAAC,IAAI,OAAA,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAA0B,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC,QAAQ,CAAC,EAAhF,CAAgF,CAAC,CAAC;AAC3G,CAAC;AAFD,wCAEC;AAED,SAAgB,cAAc,CAAI,CAA2D;IACzF,OAAO,QAAQ,CAAC,UAAA,CAAC,IAAI,OAAA,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAA4C,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC,QAAQ,CAAC,EAAlG,CAAkG,CAAC,CAAC;AAC7H,CAAC;AAFD,wCAEC;AAED,SAAgB,YAAY,CAAC,CAAW;IACpC,IAAI,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE;QACvB,OAAO,CAAC,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;KACzC;SAAM;QACH,6BAA6B;QAC7B,OAAO,CAAC,CAAiB,CAAC;KAC7B;AACL,CAAC;AAPD,oCAOC;AAED,SAAgB,UAAU,CAAC,CAAW;IAClC,IAAI,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE;QACvB,OAAO,CAAC,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;KACvC;SAAM;QACH,6BAA6B;QAC7B,OAAO,CAAC,CAAe,CAAC;KAC3B;AACL,CAAC;AAPD,gCAOC;AAED,SAAgB,WAAW,CAAC,CAAW;IACnC,OAAO,gCAAmB,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;AAC7C,CAAC;AAFD,kCAEC"}
1	+ {"version":3,"file":"util.js","sourceRoot":"","sources":["../../../../../../src/mol-model/structure/structure/element/util.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;AAIH,gCAA+B;AAE/B,4CAAoD;AAWpD,SAAgB,QAAQ,CAAI,CAAc,IAAI,OAAO,CAAC,CAAC,CAAC,CAAC;AAAzD,4BAAyD;AAEzD,SAAS,cAAc,CAAC,IAAY,IAAI,MAAM,IAAI,KAAK,CAAC,sCAA+B,IAAI,aAAU,CAAC,CAAC,CAAC,CAAC;AACzG,SAAgB,cAAc,CAAI,CAAyC;IACvE,OAAO,QAAQ,CAAC,UAAA,CAAC,IAAI,OAAA,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAA0B,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC,QAAQ,CAAC,EAAhF,CAAgF,CAAC,CAAC;AAC3G,CAAC;AAFD,wCAEC;AAED,SAAgB,cAAc,CAAI,CAA2D;IACzF,OAAO,QAAQ,CAAC,UAAA,CAAC,IAAI,OAAA,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAA4C,CAAC,CAAC,CAAC,CAAC,cAAc,CAAC,QAAQ,CAAC,EAAlG,CAAkG,CAAC,CAAC;AAC7H,CAAC;AAFD,wCAEC;AAED,SAAgB,YAAY,CAAC,CAAW;IACpC,IAAI,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE;QACvB,OAAO,CAAC,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;KACzC;SAAM;QACH,6BAA6B;QAC7B,OAAO,CAAC,CAAiB,CAAC;KAC7B;AACL,CAAC;AAPD,oCAOC;AAED,SAAgB,UAAU,CAAC,CAAW;IAClC,IAAI,WAAI,CAAC,QAAQ,CAAC,CAAC,CAAC,IAAI,CAAC,EAAE;QACvB,OAAO,CAAC,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC;KACvC;SAAM;QACH,6BAA6B;QAC7B,OAAO,CAAC,CAAe,CAAC;KAC3B;AACL,CAAC;AAPD,gCAOC;AAED,SAAgB,WAAW,CAAC,CAAW;IACnC,OAAO,gCAAmB,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;AAC7C,CAAC;AAFD,kCAEC"}

package/lib/commonjs/mol-model/structure/structure/properties.d.ts CHANGED Viewed

@@ -41,7 +41,7 @@ declare const StructureProperties: {
         microheterogeneityCompIds: StructureElement.Property<string[]>;
         secondary_structure_type: StructureElement.Property<SecondaryStructureType>;
         secondary_structure_key: StructureElement.Property<number>;
-        chem_comp_type: StructureElement.Property<"non-polymer" | "other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "Ion" | "Lipid">;
+        chem_comp_type: StructureElement.Property<"other" | "D-peptide linking" | "L-peptide linking" | "D-peptide NH3 amino terminus" | "L-peptide NH3 amino terminus" | "D-peptide COOH carboxy terminus" | "L-peptide COOH carboxy terminus" | "DNA linking" | "RNA linking" | "L-RNA linking" | "L-DNA linking" | "DNA OH 5 prime terminus" | "RNA OH 5 prime terminus" | "DNA OH 3 prime terminus" | "RNA OH 3 prime terminus" | "D-saccharide, beta linking" | "D-saccharide, alpha linking" | "L-saccharide, beta linking" | "L-saccharide, alpha linking" | "L-saccharide" | "D-saccharide" | "saccharide" | "non-polymer" | "peptide linking" | "peptide-like" | "L-gamma-peptide, C-delta linking" | "D-gamma-peptide, C-delta linking" | "L-beta-peptide, C-gamma linking" | "D-beta-peptide, C-gamma linking" | "Ion" | "Lipid">;
     };
     chain: {
         key: StructureElement.Property<import("../model").ChainIndex>;
@@ -52,7 +52,7 @@ declare const StructureProperties: {
     entity: {
         key: StructureElement.Property<import("../model").EntityIndex>;
         id: StructureElement.Property<string>;
-        type: StructureElement.Property<"polymer" | "water" | "branched" | "non-polymer" | "macrolide">;
+        type: StructureElement.Property<"non-polymer" | "polymer" | "macrolide" | "water" | "branched">;
         src_method: StructureElement.Property<"nat" | "man" | "syn">;
         pdbx_description: StructureElement.Property<string[]>;
         formula_weight: StructureElement.Property<number>;
@@ -68,7 +68,7 @@ declare const StructureProperties: {
         id: StructureElement.Property<number>;
         chainGroupId: StructureElement.Property<number>;
         multiChain: StructureElement.Property<boolean>;
-        object_primitive: StructureElement.Property<"sphere" | "gaussian" | "atomistic">;
+        object_primitive: StructureElement.Property<"sphere" | "atomistic" | "gaussian">;
         operator_name: StructureElement.Property<string>;
         model_index: StructureElement.Property<number>;
         model_label: StructureElement.Property<string>;

package/lib/commonjs/mol-model/structure/structure/properties.js CHANGED Viewed

@@ -22,7 +22,7 @@ function notAtomic() {
 }
 function notCoarse(kind) {
     if (!!kind)
-        throw new Error("Property only available for coarse models (" + kind + ").");
+        throw new Error("Property only available for coarse models (".concat(kind, ")."));
     throw new Error('Property only available for coarse models.');
 }
 // TODO: remove the type checks?

package/lib/commonjs/mol-model/structure/structure/properties.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/commonjs/mol-model/structure/structure/structure.js CHANGED Viewed

@@ -476,7 +476,7 @@ var Structure = /** @class */ (function () {
         return this.models.indexOf(m);
     };
     Structure.prototype.remapModel = function (m) {
-        var _a = this.state, dynamicBonds = _a.dynamicBonds, interUnitBonds = _a.interUnitBonds;
+        var _a = this.state, dynamicBonds = _a.dynamicBonds, interUnitBonds = _a.interUnitBonds, parent = _a.parent;
         var units = [];
         for (var _b = 0, _c = this.unitSymmetryGroups; _b < _c.length; _b++) {
             var ug = _c[_b];
@@ -488,6 +488,7 @@ var Structure = /** @class */ (function () {
             }
         }
         return Structure.create(units, {
+            parent: parent === null || parent === void 0 ? void 0 : parent.remapModel(m),
             label: this.label,
             interUnitBonds: dynamicBonds ? undefined : interUnitBonds,
             dynamicBonds: dynamicBonds
@@ -1227,7 +1228,7 @@ function getSerialMapping(structure) {
     }
     Structure.distance = distance;
     function elementDescription(s) {
-        return s.elementCount === 1 ? '1 element' : s.elementCount + " elements";
+        return s.elementCount === 1 ? '1 element' : "".concat(s.elementCount, " elements");
     }
     Structure.elementDescription = elementDescription;
     function validUnitPair(s, a, b) {