molstar 2.3.3 → 2.3.8

package/lib/commonjs/mol-model-formats/structure/pdb/entity.js

@@ -21,7 +21,7 @@ function parseCmpnd(lines, lineStart, lineEnd) {
     var getLine = function (n) { return lines.data.substring(lines.indices[2 * n], lines.indices[2 * n + 1]); };
     var currentSpec;
     var currentCompound = { chains: [], description: '' };
-    var Compounds = [];
+    var compounds = [];
     for (var i = lineStart; i < lineEnd; i++) {
         var line = getLine(i);
         // COLUMNS       DATA TYPE       FIELD         DEFINITION
@@ -47,7 +47,7 @@ function parseCmpnd(lines, lineStart, lineEnd) {
                 chains: [],
                 description: ''
             };
-            Compounds.push(currentCompound);
+            compounds.push(currentCompound);
         }
         else if (currentSpec === 'MOLECULE') {
             if (currentCompound.description)
@@ -58,7 +58,33 @@ function parseCmpnd(lines, lineStart, lineEnd) {
             Array.prototype.push.apply(currentCompound.chains, value.split(/\s*,\s*/));
         }
     }
-    return Compounds;
+    // Define a seprate entity for each chain
+    // --------------------------------------
+    //
+    // This is a workaround for how sequences are currently determined for PDB files.
+    //
+    // The current approach infers the "observed sequence" from the atomic hierarchy.
+    // However, for example for PDB ID 3HHR, this approach fails, since chains B and C
+    // belong to the same entity but contain different observed sequence, which causes display
+    // errors in the sequence viewer (since the sequences are determined "per entity").
+    //
+    // A better approach could be to parse SEQRES categories and use it to construct
+    // entity_poly_seq category. However, this would require constructing label_seq_id (with gaps)
+    // from RES ID pdb column (auth_seq_id), which isn't a trivial exercise.
+    //
+    // (properly formatted) mmCIF structures do not exhibit this issue.
+    var singletons = [];
+    for (var _i = 0, compounds_1 = compounds; _i < compounds_1.length; _i++) {
+        var comp = compounds_1[_i];
+        for (var _a = 0, _b = comp.chains; _a < _b.length; _a++) {
+            var chain = _b[_a];
+            singletons.push({
+                description: comp.description,
+                chains: [chain]
+            });
+        }
+    }
+    return singletons;
 }
 exports.parseCmpnd = parseCmpnd;
 function parseHetnam(lines, lineStart, lineEnd) {
@@ -75,7 +101,7 @@ function parseHetnam(lines, lineStart, lineEnd) {
         var het = line.substr(11, 3).trim();
         var name_1 = line.substr(15).trim();
         if (hetnams.has(het)) {
-            hetnams.set(het, hetnams.get(het) + " " + name_1);
+            hetnams.set(het, "".concat(hetnams.get(het), " ").concat(name_1));
         }
         else {
             hetnams.set(het, name_1);

package/lib/commonjs/mol-model-formats/structure/pdb/entity.js.map

@@ -1 +1 @@
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+{"version":3,"file":"entity.js","sourceRoot":"","sources":["../../../../../src/mol-model-formats/structure/pdb/entity.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAKH,IAAM,IAAI,GAAG;IACT,QAAQ,EAAE,EAAE;IACZ,UAAU,EAAE,EAAE;IACd,OAAO,EAAE,EAAE;IACX,UAAU,EAAE,EAAE;IACd,SAAS,EAAE,EAAE;IACb,IAAI,EAAE,EAAE;IACR,YAAY,EAAE,EAAE;IAChB,UAAU,EAAE,EAAE;IACd,eAAe,EAAE,EAAE;CACtB,CAAC;AAGF,SAAgB,UAAU,CAAC,KAAa,EAAE,SAAiB,EAAE,OAAe;IACxE,IAAM,OAAO,GAAG,UAAC,CAAS,IAAK,OAAA,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,EAApE,CAAoE,CAAC;IAEpG,IAAI,WAA6B,CAAC;IAClC,IAAI,eAAe,GAAmB,EAAE,MAAM,EAAE,EAAE,EAAE,WAAW,EAAE,EAAE,EAAE,CAAC;IACtE,IAAM,SAAS,GAAqB,EAAE,CAAC;IAEvC,KAAK,IAAI,CAAC,GAAG,SAAS,EAAE,CAAC,GAAG,OAAO,EAAE,CAAC,EAAE,EAAE;QACtC,IAAM,IAAI,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC;QACxB,yDAAyD;QACzD,qFAAqF;QACrF,yCAAyC;QACzC,wFAAwF;QACxF,uFAAuF;QACvF,qBAAqB;QAErB,IAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,EAAE,EAAE,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC;QACzC,IAAM,YAAY,GAAG,KAAK,CAAC,OAAO,CAAC,GAAG,CAAC,CAAC;QACxC,IAAM,SAAS,GAAG,KAAK,CAAC,SAAS,CAAC,CAAC,EAAE,YAAY,CAAC,CAAC;QAEnD,IAAI,KAAK,SAAQ,CAAC;QAElB,IAAI,SAAS,IAAI,IAAI,EAAE;YACnB,WAAW,GAAG,SAAiB,CAAC;YAChC,KAAK,GAAG,KAAK,CAAC,SAAS,CAAC,YAAY,GAAG,CAAC,CAAC,CAAC;SAC7C;aAAM;YACH,KAAK,GAAG,KAAK,CAAC;SACjB;QACD,KAAK,GAAG,KAAK,CAAC,OAAO,CAAC,IAAI,EAAE,EAAE,CAAC,CAAC;QAEhC,IAAI,WAAW,KAAK,QAAQ,EAAE;YAC1B,eAAe,GAAG;gBACd,MAAM,EAAE,EAAE;gBACV,WAAW,EAAE,EAAE;aAClB,CAAC;YACF,SAAS,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC;SACnC;aAAM,IAAI,WAAW,KAAK,UAAU,EAAE;YACnC,IAAI,eAAe,CAAC,WAAW;gBAAE,eAAe,CAAC,WAAW,IAAI,GAAG,CAAC;YACpE,eAAe,CAAC,WAAW,IAAI,KAAK,CAAC;SACxC;aAAM,IAAI,WAAW,KAAK,OAAO,EAAE;YAChC,KAAK,CAAC,SAAS,CAAC,IAAI,CAAC,KAAK,CAAC,eAAe,CAAC,MAAM,EAAE,KAAK,CAAC,KAAK,CAAC,SAAS,CAAC,CAAC,CAAC;SAC9E;KACJ;IAED,yCAAyC;IACzC,yCAAyC;IACzC,EAAE;IACF,iFAAiF;IACjF,EAAE;IACF,iFAAiF;IACjF,kFAAkF;IAClF,0FAA0F;IAC1F,mFAAmF;IACnF,EAAE;IACF,gFAAgF;IAChF,8FAA8F;IAC9F,wEAAwE;IACxE,EAAE;IACF,mEAAmE;IACnE,IAAM,UAAU,GAAqB,EAAE,CAAC;IACxC,KAAmB,UAAS,EAAT,uBAAS,EAAT,uBAAS,EAAT,IAAS,EAAE;QAAzB,IAAM,IAAI,kBAAA;QACX,KAAoB,UAAW,EAAX,KAAA,IAAI,CAAC,MAAM,EAAX,cAAW,EAAX,IAAW,EAAE;YAA5B,IAAM,KAAK,SAAA;YACZ,UAAU,CAAC,IAAI,CAAC;gBACZ,WAAW,EAAE,IAAI,CAAC,WAAW;gBAC7B,MAAM,EAAE,CAAC,KAAK,CAAC;aAClB,CAAC,CAAC;SACN;KACJ;IACD,OAAO,UAAU,CAAC;AACtB,CAAC;AArED,gCAqEC;AAED,SAAgB,WAAW,CAAC,KAAa,EAAE,SAAiB,EAAE,OAAe;IACzE,IAAM,OAAO,GAAG,UAAC,CAAS,IAAK,OAAA,KAAK,CAAC,IAAI,CAAC,SAAS,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,CAAC,EAAE,KAAK,CAAC,OAAO,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,CAAC,CAAC,EAApE,CAAoE,CAAC;IAEpG,IAAM,OAAO,GAAG,IAAI,GAAG,EAAkB,CAAC;IAE1C,KAAK,IAAI,CAAC,GAAG,SAAS,EAAE,CAAC,GAAG,OAAO,EAAE,CAAC,EAAE,EAAE;QACtC,IAAM,IAAI,GAAG,OAAO,CAAC,CAAC,CAAC,CAAC;QACxB,yDAAyD;QACzD,+EAA+E;QAC/E,uCAAuC;QACvC,wFAAwF;QACxF,+EAA+E;QAC/E,6DAA6D;QAE7D,IAAM,GAAG,GAAG,IAAI,CAAC,MAAM,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;QACtC,IAAM,MAAI,GAAG,IAAI,CAAC,MAAM,CAAC,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC;QAEpC,IAAI,OAAO,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE;YAClB,OAAO,CAAC,GAAG,CAAC,GAAG,EAAE,UAAG,OAAO,CAAC,GAAG,CAAC,GAAG,CAAE,cAAI,MAAI,CAAE,CAAC,CAAC;SACpD;aAAM;YACH,OAAO,CAAC,GAAG,CAAC,GAAG,EAAE,MAAI,CAAC,CAAC;SAC1B;KACJ;IAED,OAAO,OAAO,CAAC;AACnB,CAAC;AAzBD,kCAyBC"}

package/lib/commonjs/mol-model-formats/structure/property/assembly.js

@@ -95,7 +95,7 @@ function getAssemblyOperators(matrices, operatorNames, startIndex, assemblyId) {
             linear_algebra_1.Mat4.mul(m, m, matrices.get(op[i]));
         }
         index++;
-        operators[operators.length] = symmetry_operator_1.SymmetryOperator.create("ASM_" + index, m, { assembly: { id: assemblyId, operId: index, operList: op } });
+        operators[operators.length] = symmetry_operator_1.SymmetryOperator.create("ASM_".concat(index), m, { assembly: { id: assemblyId, operId: index, operList: op } });
     }
     return operators;
 }

package/lib/commonjs/mol-model-formats/structure/property/assembly.js.map

@@ -1 +1 @@
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+{"version":3,"file":"assembly.js","sourceRoot":"","sources":["../../../../../src/mol-model-formats/structure/property/assembly.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;AAEH,mEAAsE;AACtE,kFAAgF;AAChF,mFAAiH;AACjH,0DAA4D;AAC5D,0DAAmE;AAQnE,SAAgB,gBAAgB,CAAC,oBAAoC,EAAE,wBAA2C,EAAE,qBAAqC;IACrJ,IAAI,CAAC,oBAAoB,CAAC,SAAS;QAAE,OAAO,EAAE,CAAC;IAE/C,IAAM,QAAQ,GAAG,WAAW,CAAC,qBAAqB,CAAC,CAAC;IACpD,IAAM,UAAU,GAAe,EAAE,CAAC;IAClC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,oBAAoB,CAAC,SAAS,EAAE,CAAC,EAAE,EAAE;QACrD,UAAU,CAAC,UAAU,CAAC,MAAM,CAAC,GAAG,cAAc,CAAC,oBAAoB,EAAE,wBAAwB,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAC;KAC/G;IACD,OAAO,UAAU,CAAC;AACtB,CAAC;AATD,4CASC;AAKD,SAAS,cAAc,CAAC,oBAAoC,EAAE,wBAA2C,EAAE,KAAa,EAAE,QAAkB;IACxI,IAAM,EAAE,GAAG,oBAAoB,CAAC,EAAE,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IAChD,IAAM,OAAO,GAAG,oBAAoB,CAAC,OAAO,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC;IAC1D,IAAM,UAAU,GAAgB,EAAE,CAAC;IAE3B,IAAA,WAAW,GAAoC,wBAAwB,YAA5D,EAAE,eAAe,GAAmB,wBAAwB,gBAA3C,EAAE,YAAY,GAAK,wBAAwB,aAA7B,CAA8B;IAEhF,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,wBAAwB,CAAC,SAAS,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE;QAClE,IAAI,WAAW,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,EAAE;YAAE,SAAS;QAC1C,UAAU,CAAC,UAAU,CAAC,MAAM,CAAC,GAAG;YAC5B,UAAU,EAAE,EAAE;YACd,UAAU,EAAE,eAAe,CAAC,KAAK,CAAC,CAAC,CAAC;YACpC,OAAO,EAAE,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC;SACjC,CAAC;KACL;IAED,OAAO,mBAAQ,CAAC,MAAM,CAAC,EAAE,EAAE,OAAO,EAAE,sBAAsB,CAAC,UAAU,EAAE,QAAQ,CAAC,CAAC,CAAC;AACtF,CAAC;AAED,SAAS,sBAAsB,CAAC,UAAuB,EAAE,QAAkB;IACvE,OAAO;QACH,IAAM,MAAM,GAAoB,EAAE,CAAC;QAEnC,IAAI,cAAc,GAAG,CAAC,CAAC;QACvB,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,UAAU,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YACxC,IAAM,GAAG,GAAG,UAAU,CAAC,CAAC,CAAC,CAAC;YAC1B,IAAM,YAAY,GAAG,iBAAiB,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC;YACvD,IAAM,aAAa,GAAG,eAAe,CAAC,YAAY,CAAC,CAAC;YACpD,IAAM,SAAS,GAAG,oBAAoB,CAAC,QAAQ,EAAE,aAAa,EAAE,cAAc,EAAE,GAAG,CAAC,UAAU,CAAC,CAAC;YAChG,IAAM,QAAQ,GAAG,mBAAC,CAAC,UAAU,CAAC,KAAK,CAAC,EAAE,SAAS,EAAE,mBAAC,CAAC,IAAI,CAAC,GAAG,CACvD,mBAAC,CAAC,IAAI,CAAC,EAAE,CAAC,UAAA,GAAG,IAAI,OAAA,+BAAmB,CAAC,IAAI,CAAC,aAAa,CAAC,GAAG,CAAC,OAAO,CAAC,EAAnD,CAAmD,EAAE,oCAAgB,CAAC,WAAW,CAAC,EACnG,mBAAC,CAAC,IAAI,CAAC,KAAK,CAAC,UAAA,GAAG,IAAI,OAAA,+BAAmB,CAAC,KAAK,CAAC,aAAa,CAAC,GAAG,CAAC,OAAO,CAAC,EAApD,CAAoD,EAAE,GAAG,CAAC,OAAO,CAAC,CACzF,EAAE,CAAC,CAAC;YACL,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,EAAE,QAAQ,UAAA,EAAE,SAAS,WAAA,EAAE,CAAC;YAChD,cAAc,IAAI,SAAS,CAAC,MAAM,CAAC;SACtC;QAED,OAAO,MAAM,CAAC;IAClB,CAAC,CAAC;AACN,CAAC;AAED,SAAS,WAAW,CAAC,qBAAqC;IAC9C,IAAA,EAAE,GAA8B,qBAAqB,GAAnD,EAAE,MAAM,GAAsB,qBAAqB,OAA3C,EAAE,MAAM,GAAc,qBAAqB,OAAnC,EAAE,OAAO,GAAK,qBAAqB,QAA1B,CAA2B;IAC9D,IAAM,QAAQ,GAAG,IAAI,GAAG,EAAgB,CAAC;IAEzC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,qBAAqB,CAAC,SAAS,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,EAAE,EAAE;QAC/D,IAAM,CAAC,GAAG,uBAAM,CAAC,MAAM,CAAC,IAAA,qBAAI,GAAE,EAAE,OAAO,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;QACvE,IAAM,CAAC,GAAG,uBAAM,CAAC,MAAM,CAAC,IAAA,qBAAI,GAAE,EAAE,OAAO,CAAC,MAAM,CAAC,KAAK,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;QACvE,qBAAI,CAAC,cAAc,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;QAC1B,qBAAI,CAAC,QAAQ,CAAC,CAAC,EAAE,CAAC,EAAE,CAAC,EAAE,CAAC,CAAC,CAAC;QAC1B,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,CAAC,CAAC,CAAC;KAChC;IAED,OAAO,QAAQ,CAAC;AACpB,CAAC;AAED,SAAS,eAAe,CAAC,YAAwB;IAC7C,IAAM,GAAG,GAAe,EAAE,CAAC;IAC3B,IAAM,SAAS,GAAa,EAAE,CAAC;IAC/B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,YAAY,CAAC,MAAM,EAAE,CAAC,EAAE;QAAE,SAAS,CAAC,CAAC,CAAC,GAAG,EAAE,CAAC;IAChE,gBAAgB,CAAC,YAAY,EAAE,GAAG,EAAE,YAAY,CAAC,MAAM,GAAG,CAAC,EAAE,SAAS,CAAC,CAAC;IACxE,OAAO,GAAG,CAAC;AACf,CAAC;AAED,SAAS,gBAAgB,CAAC,aAAyB,EAAE,IAAgB,EAAE,CAAS,EAAE,OAAiB;IAC/F,IAAI,CAAC,GAAG,CAAC,EAAE;QACP,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,GAAG,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QACrC,OAAO;KACV;IAED,IAAM,GAAG,GAAG,aAAa,CAAC,CAAC,CAAC,EAAE,GAAG,GAAG,GAAG,CAAC,MAAM,CAAC;IAC/C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,GAAG,EAAE,CAAC,EAAE,EAAE;QAC1B,OAAO,CAAC,CAAC,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC,CAAC;QACpB,gBAAgB,CAAC,aAAa,EAAE,IAAI,EAAE,CAAC,GAAG,CAAC,EAAE,OAAO,CAAC,CAAC;KACzD;AACL,CAAC;AAED,SAAS,oBAAoB,CAAC,QAAkB,EAAE,aAAyB,EAAE,UAAkB,EAAE,UAAkB;IAC/G,IAAM,SAAS,GAAuB,EAAE,CAAC;IAEzC,IAAI,KAAK,GAAG,UAAU,CAAC;IACvB,KAAiB,UAAa,EAAb,+BAAa,EAAb,2BAAa,EAAb,IAAa,EAAE;QAA3B,IAAM,EAAE,sBAAA;QACT,IAAM,CAAC,GAAG,qBAAI,CAAC,QAAQ,EAAE,CAAC;QAC1B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,EAAE,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE;YAChC,qBAAI,CAAC,GAAG,CAAC,CAAC,EAAE,CAAC,EAAE,QAAQ,CAAC,GAAG,CAAC,EAAE,CAAC,CAAC,CAAC,CAAE,CAAC,CAAC;SACxC;QACD,KAAK,EAAE,CAAC;QACR,SAAS,CAAC,SAAS,CAAC,MAAM,CAAC,GAAG,oCAAgB,CAAC,MAAM,CAAC,cAAO,KAAK,CAAE,EAAE,CAAC,EAAE,EAAE,QAAQ,EAAE,EAAE,EAAE,EAAE,UAAU,EAAE,MAAM,EAAE,KAAK,EAAE,QAAQ,EAAE,EAAE,EAAE,EAAE,CAAC,CAAC;KAC3I;IAED,OAAO,SAAS,CAAC;AACrB,CAAC;AAED,SAAS,iBAAiB,CAAC,KAAa;IACpC,0DAA0D;IAC1D,4BAA4B;IAE5B,IAAM,OAAO,GAAG,qBAAqB,EAAE,MAAM,GAAa,EAAE,EAAE,GAAG,GAAe,EAAE,CAAC;IAEnF,IAAI,CAAM,CAAC;IACX,OAAO,CAAC,GAAG,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC;QAAE,MAAM,CAAC,MAAM,CAAC,MAAM,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC;IAE7D,MAAM,CAAC,OAAO,CAAC,UAAA,CAAC;QACZ,I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package/lib/commonjs/mol-model-formats/structure/property/symmetry.js

@@ -70,7 +70,7 @@ function getNcsOperators(struct_ncs_oper) {
         if (struct_ncs_oper.code.value(i) === 'given' && !linear_algebra_1.Mat3.isIdentity(m) && !linear_algebra_1.Vec3.isZero(v))
             continue;
         var ncsId = id.value(i);
-        opers[opers.length] = geometry_1.SymmetryOperator.ofRotationAndOffset("ncs_" + ncsId, m, v, ncsId);
+        opers[opers.length] = geometry_1.SymmetryOperator.ofRotationAndOffset("ncs_".concat(ncsId), m, v, ncsId);
     }
     return opers;
 }

package/lib/commonjs/mol-model-formats/structure/property/symmetry.js.map

@@ -1 +1 @@
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+{"version":3,"file":"symmetry.js","sourceRoot":"","sources":["../../../../../src/mol-model-formats/structure/property/symmetry.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;AAEH,iEAAuE;AACvE,uDAA0F;AAC1F,mEAAsE;AAEtE,uCAA8C;AAE9C,+CAA4D;AAK5D,IAAU,aAAa,CA6BtB;AA7BD,WAAU,aAAa;IACN,wBAAU,GAA6B;QAChD,IAAI,EAAE,gBAAgB;KACzB,CAAC;IAEW,sBAAQ,GAAG,iCAAsB,CAAC,MAAM,CAAW,cAAA,UAAU,CAAC,CAAC;IAY5E,SAAgB,QAAQ,CAAC,IAAU;QAC/B,IAAM,UAAU,GAAG,IAAA,2BAAgB,EAAC,IAAI,CAAC,oBAAoB,EAAE,IAAI,CAAC,wBAAwB,EAAE,IAAI,CAAC,qBAAqB,CAAC,CAAC;QAC1H,IAAM,UAAU,GAAG,aAAa,CAAC,IAAI,CAAC,QAAQ,EAAE,IAAI,CAAC,IAAI,CAAC,CAAC;QAC3D,IAAM,yBAAyB,GAAG,4BAA4B,CAAC,IAAI,CAAC,UAAU,EAAE,UAAU,CAAC,CAAC;QAC5F,OAAO,EAAE,UAAU,YAAA,EAAE,UAAU,YAAA,EAAE,yBAAyB,2BAAA,EAAE,YAAY,EAAE,eAAe,CAAC,IAAI,CAAC,eAAe,CAAC,EAAE,CAAC;IACtH,CAAC;IALe,sBAAQ,WAKvB,CAAA;IAED,SAAgB,QAAQ,CAAC,IAAU,EAAE,eAAqB;QACtD,IAAM,SAAS,GAAG,yBAAc,CAAC,MAAM,CAAC,KAAK,EAAE,IAAI,EAAE,eAAe,CAAC,CAAC;QACtE,IAAM,UAAU,GAAG,qBAAU,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;QAChD,OAAO,EAAE,UAAU,EAAE,EAAE,EAAE,UAAU,YAAA,EAAE,yBAAyB,EAAE,KAAK,EAAE,CAAC;IAC5E,CAAC;IAJe,sBAAQ,WAIvB,CAAA;AACL,CAAC,EA7BS,aAAa,KAAb,aAAa,QA6BtB;AA/BQ,sCAAa;AAiCtB,SAAS,4BAA4B,CAAC,UAA6C,EAAE,UAAsB;IACvG,IAAI,UAAU,CAAC,SAAS,KAAK,CAAC;QAAE,OAAO,KAAK,CAAC;IAC7C,0FAA0F;IAC1F,OAAO,KAAK,CAAC;AACjB,CAAC;AAED,SAAS,yBAAyB,CAAC,QAAyC;IACxE,IAAM,WAAW,GAAG,QAAQ,CAAC,mBAAmB,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IAC3D,IAAM,SAAS,GAAG,QAAQ,CAAC,sBAAsB,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;IAC5D,IAAI,CAAC,QAAQ,CAAC,mBAAmB,CAAC,CAAC,SAAS;QAAE,OAAO,SAAS,CAAC;IAC/D,IAAI,CAAC,QAAQ,CAAC,sBAAsB,CAAC,CAAC,SAAS;QAAE,OAAO,WAAW,CAAC;IACpE,OAAO,SAAS,CAAC;AACrB,CAAC;AAED,SAAS,aAAa,CAAC,QAAyC,EAAE,IAAiC;IAC/F,IAAI,QAAQ,CAAC,SAAS,KAAK,CAAC,IAAI,IAAI,CAAC,SAAS,KAAK,CAAC;QAAE,OAAO,qBAAU,CAAC,MAAM,CAAC;IAC/E,IAAM,YAAY,GAAG,yBAAyB,CAAC,QAAQ,CAAC,CAAC;IACzD,IAAM,SAAS,GAAG,yBAAc,CAAC,MAAM,CAAC,YAAY,EAChD,qBAAI,CAAC,MAAM,CAAC,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,EACnF,qBAAI,CAAC,KAAK,CAAC,qBAAI,CAAC,IAAI,EAAE,EAAE,qBAAI,CAAC,MAAM,CAAC,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,WAAW,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,EAAE,IAAI,CAAC,EAAE,GAAG,GAAG,CAAC,CAAC,CAAC;IAEzI,OAAO,qBAAU,CAAC,MAAM,CAAC,SAAS,CAAC,CAAC;AACxC,CAAC;AAED,SAAS,eAAe,CAAC,eAAuD;IAC5E,IAAI,eAAe,CAAC,SAAS,KAAK,CAAC;QAAE,OAAO,KAAK,CAAC,CAAC;IAC3C,IAAA,EAAE,GAAqB,eAAe,GAApC,EAAE,MAAM,GAAa,eAAe,OAA5B,EAAE,MAAM,GAAK,eAAe,OAApB,CAAqB;IAE/C,IAAM,WAAW,GAAG,oBAAY,CAAC,eAAe,CAAC,MAAM,CAAC,KAAK,EAAE,WAAW,GAAG,oBAAY,CAAC,eAAe,CAAC,MAAM,CAAC,KAAK,CAAC;IAEvH,IAAM,KAAK,GAAuB,EAAE,CAAC;IACrC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,eAAe,CAAC,SAAS,EAAE,CAAC,EAAE,EAAE;QAChD,IAAM,CAAC,GAAG,uBAAM,CAAC,MAAM,CAAC,IAAA,qBAAI,GAAE,EAAE,WAAW,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;QAC9D,IAAM,CAAC,GAAG,uBAAM,CAAC,MAAM,CAAC,IAAA,qBAAI,GAAE,EAAE,WAAW,EAAE,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;QAC9D,IAAI,CAAC,2BAAgB,CAAC,6BAA6B,CAAC,CAAC,EAAE,CAAC,CAAC;YAAE,SAAS;QACpE,4CAA4C;QAC5C,IAAI,eAAe,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,OAAO,IAAI,CAAC,qBAAI,CAAC,UAAU,CAAC,CAAC,CAAC,IAAI,CAAC,qBAAI,CAAC,MAAM,CAAC,CAAC,CAAC;YAAE,SAAS;QAClG,IAAM,KAAK,GAAG,EAAE,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAC1B,KAAK,CAAC,KAAK,CAAC,MAAM,CAAC,GAAG,2BAAgB,CAAC,mBAAmB,CAAC,cAAO,KAAK,CAAE,EAAE,CAAC,EAAE,CAAC,EAAE,KAAK,CAAC,CAAC;KAC3F;IACD,OAAO,KAAK,CAAC;AACjB,CAAC"}

package/lib/commonjs/mol-model-formats/volume/ccp4.js

@@ -33,7 +33,7 @@ function getTypedArrayCtor(header) {
         case typed_array_1.TypedArrayValueType.Int16: return Int16Array;
         case typed_array_1.TypedArrayValueType.Uint16: return Uint16Array;
     }
-    throw Error(valueType + " is not a supported value format.");
+    throw Error("".concat(valueType, " is not a supported value format."));
 }
 function volumeFromCcp4(source, params) {
     var _this = this;

package/lib/commonjs/mol-model-formats/volume/ccp4.js.map

@@ -1 +1 @@
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+{"version":3,"file":"ccp4.js","sourceRoot":"","sources":["../../../../src/mol-model-formats/volume/ccp4.ts"],"names":[],"mappings":";AAAA;;;;GAIG;;;;AAGH,2CAAsC;AACtC,oDAAgE;AAChE,gEAA6D;AAE7D,4CAA+C;AAC/C,0DAAmE;AACnE,+DAAsE;AACtE,8CAA+E;AAE/E,mEAAmE;AAEnE,mFAAmF;AACnF,SAAgB,aAAa,CAAC,MAAkB;IAC5C,IAAI,MAAM,CAAC,OAAO,KAAK,GAAG,IAAI,MAAM,CAAC,OAAO,KAAK,GAAG,IAAI,MAAM,CAAC,OAAO,KAAK,GAAG,EAAE;QAC5E,OAAO,qBAAI,CAAC,MAAM,CAAC,MAAM,CAAC,OAAO,EAAE,MAAM,CAAC,OAAO,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;KACtE;SAAM;QACH,OAAO,qBAAI,CAAC,MAAM,CACd,MAAM,CAAC,OAAO,GAAG,CAAC,MAAM,CAAC,OAAO,GAAG,MAAM,CAAC,EAAE,CAAC,EAC7C,MAAM,CAAC,OAAO,GAAG,CAAC,MAAM,CAAC,OAAO,GAAG,MAAM,CAAC,EAAE,CAAC,EAC7C,MAAM,CAAC,OAAO,GAAG,CAAC,MAAM,CAAC,OAAO,GAAG,MAAM,CAAC,EAAE,CAAC,CAChD,CAAC;KACL;AACL,CAAC;AAVD,sCAUC;AAED,SAAS,iBAAiB,CAAC,MAAkB;IACzC,IAAM,SAAS,GAAG,IAAA,yBAAgB,EAAC,MAAM,CAAC,CAAC;IAC3C,QAAQ,SAAS,EAAE;QACf,KAAK,iCAAmB,CAAC,OAAO,CAAC,CAAC,OAAO,YAAY,CAAC;QACtD,KAAK,iCAAmB,CAAC,IAAI,CAAC,CAAC,OAAO,SAAS,CAAC;QAChD,KAAK,iCAAmB,CAAC,KAAK,CAAC,CAAC,OAAO,UAAU,CAAC;QAClD,KAAK,iCAAmB,CAAC,MAAM,CAAC,CAAC,OAAO,WAAW,CAAC;KACvD;IACD,MAAM,KAAK,CAAC,UAAG,SAAS,sCAAmC,CAAC,CAAC;AACjE,CAAC;AAED,SAAgB,cAAc,CAAC,MAAgB,EAAE,MAA8E;IAA/H,iBAiDC;IAhDG,OAAO,eAAI,CAAC,MAAM,CAAS,eAAe,EAAE,UAAM,GAAG;;;YACzC,MAAM,GAAa,MAAM,OAAnB,EAAE,MAAM,GAAK,MAAM,OAAX,CAAY;YAC5B,IAAI,GAAG,qBAAI,CAAC,MAAM,CAAC,MAAM,CAAC,OAAO,EAAE,MAAM,CAAC,OAAO,EAAE,MAAM,CAAC,OAAO,CAAC,CAAC;YACzE,IAAI,MAAM,IAAI,MAAM,CAAC,SAAS;gBAAE,qBAAI,CAAC,GAAG,CAAC,IAAI,EAAE,IAAI,EAAE,MAAM,CAAC,SAAS,CAAC,CAAC;YACjE,MAAM,GAAG,qBAAI,CAAC,MAAM,CAAC,IAAA,eAAQ,EAAC,MAAM,CAAC,KAAK,CAAC,EAAE,IAAA,eAAQ,EAAC,MAAM,CAAC,IAAI,CAAC,EAAE,IAAA,eAAQ,EAAC,MAAM,CAAC,KAAK,CAAC,CAAC,CAAC;YAC5F,UAAU,GAAG,MAAM,CAAC,IAAI,GAAG,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC;YACnD,IAAI,GAAG,yBAAc,CAAC,MAAM,CAAC,UAAU,IAAI,KAAK,EAAE,IAAI,EAAE,MAAM,CAAC,CAAC;YAEhE,uBAAuB,GAAG,qBAAI,CAAC,MAAM,CAAC,MAAM,CAAC,IAAI,GAAG,CAAC,EAAE,MAAM,CAAC,IAAI,GAAG,CAAC,EAAE,MAAM,CAAC,IAAI,GAAG,CAAC,CAAC,CAAC;YACzF,cAAc,GAAG,uBAAM,CAAC,uCAAuC,CAAC,uBAAuB,CAAC,CAAC;YAEzF,IAAI,GAAG,CAAC,MAAM,CAAC,EAAE,EAAE,MAAM,CAAC,EAAE,EAAE,MAAM,CAAC,EAAE,CAAC,CAAC;YACzC,MAAM,GAAG,cAAc,CAAC,CAAC,MAAM,CAAC,EAAE,EAAE,MAAM,CAAC,EAAE,EAAE,MAAM,CAAC,EAAE,CAAC,CAAC,CAAC;YAC3D,MAAM,GAAG,aAAa,CAAC,MAAM,CAAC,CAAC;YACrC,IAAI,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,MAAM;gBAAE,qBAAI,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,CAAC,MAAM,CAAC,CAAC;YACtD,UAAU,GAAG,cAAc,CAAC,MAAM,CAAC,CAAC;YAEpC,WAAW,GAAG,qBAAI,CAAC,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE,UAAU,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE,UAAU,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;YACrG,eAAe,GAAG,qBAAI,CAAC,MAAM,CAAC,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,EAAE,MAAM,CAAC,CAAC,CAAC,GAAG,IAAI,CAAC,CAAC,CAAC,CAAC,CAAC;YAE7F,KAAK,GAAG,uBAAM,CAAC,KAAK,CAAC,MAAM,EAAE,uBAAM,CAAC,eAAe,CAAC,uBAAuB,CAAC,EAAE,iBAAiB,CAAC,MAAM,CAAC,CAAC,CAAC;YACzG,IAAI,GAAG,uBAAM,CAAC,MAAM,CAAC,KAAK,EAAE,uBAAM,CAAC,KAAK,CAAC,MAAM,CAAC,CAAC,CAAC;YAOlD,SAAS,GAAG,MAAM,CAAC,IAAI,KAAK,CAAC,IAAI,MAAM,CAAC,IAAI,KAAK,CAAC,IAAI,MAAM,CAAC,KAAK,KAAK,CAAC,IAAI,MAAM,CAAC,IAAI,KAAK,CAAC,CAAC;YAEpG,sBAAO;oBACH,KAAK,EAAE,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,KAAK;oBACpB,OAAO,EAAE,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,OAAO;oBACxB,IAAI,EAAE;wBACF,SAAS,EAAE,EAAE,IAAI,EAAE,YAAY,EAAE,IAAI,MAAA,EAAE,aAAa,EAAE,gBAAK,CAAC,MAAM,CAAC,WAAW,EAAE,qBAAI,CAAC,GAAG,CAAC,qBAAI,CAAC,IAAI,EAAE,EAAE,WAAW,EAAE,eAAe,CAAC,CAAC,EAAE;wBACtI,KAAK,EAAE,IAAI;wBACX,KAAK,EAAE;4BACH,GAAG,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,SAAS,CAAC,CAAC,CAAC,CAAC,IAAA,gBAAQ,EAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI;4BACvE,GAAG,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,SAAS,CAAC,CAAC,CAAC,CAAC,IAAA,gBAAQ,EAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI;4BACvE,IAAI,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,SAAS,CAAC,CAAC,CAAC,CAAC,IAAA,iBAAS,EAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK;4BAC3E,KAAK,EAAE,CAAC,KAAK,CAAC,MAAM,CAAC,IAAI,CAAC,IAAI,MAAM,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC,IAAA,gBAAQ,EAAC,MAAM,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,IAAI;yBACpF;qBACJ;oBACD,UAAU,EAAE,UAAU,CAAC,MAAM,CAAC,MAAM,CAAC;oBACrC,gBAAgB,EAAE,IAAI,kCAAgB,EAAE;oBACxC,aAAa,EAAE,MAAM,CAAC,MAAM,CAAC,IAAI,CAAC;iBACrC,EAAC;;SACL,CAAC,CAAC;AACP,CAAC;AAjDD,wCAiDC;AAQD,IAAU,UAAU,CAQnB;AARD,WAAU,UAAU;IAChB,SAAgB,EAAE,CAAC,CAAe;QAC9B,OAAO,CAAA,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,IAAI,MAAK,MAAM,CAAC;IAC9B,CAAC;IAFe,aAAE,KAEjB,CAAA;IAED,SAAgB,MAAM,CAAC,IAAc;QACjC,OAAO,EAAE,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,IAAI,CAAC,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC;IACzD,CAAC;IAFe,iBAAM,SAErB,CAAA;AACL,CAAC,EARS,UAAU,KAAV,UAAU,QAQnB;AAZQ,gCAAU"}

package/lib/commonjs/mol-model-props/common/custom-element-property.js

@@ -70,7 +70,7 @@ var CustomElementProperty;
                 color: color,
                 props: props,
                 contextHash: contextHash,
-                description: "Assign element colors based on '" + modelProperty.label + "' data."
+                description: "Assign element colors based on '".concat(modelProperty.label, "' data.")
             };
         }
         return {

package/lib/commonjs/mol-model-props/common/custom-element-property.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-model-props/common/custom-property.js

@@ -50,7 +50,7 @@ var CustomProperty;
         Registry.prototype.get = function (name) {
             var prop = this.providers.get(name);
             if (!prop) {
-                throw new Error("Custom property '" + name + "' is not registered.");
+                throw new Error("Custom property '".concat(name, "' is not registered."));
             }
             return this.providers.get(name);
         };

package/lib/commonjs/mol-model-props/common/custom-property.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-model-props/computed/interactions/common.js

@@ -93,7 +93,7 @@ var InteractionsInterContacts = /** @class */ (function (_super) {
         return this.elementKeyIndex.get(this.getElementKey(index, unit.id)) || [];
     };
     InteractionsInterContacts.prototype.getElementKey = function (index, unitId) {
-        return index + "|" + unitId;
+        return "".concat(index, "|").concat(unitId);
     };
     return InteractionsInterContacts;
 }(inter_unit_graph_1.InterUnitGraph));

package/lib/commonjs/mol-model-props/computed/interactions/common.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-model-props/computed/interactions/refine.js

@@ -86,8 +86,8 @@ function hydrophobicRefiner(structure, interactions) {
         var elementB = infoB.members[infoB.offsets[infoB.feature]];
         var residueA = infoA.unit.getResidueIndex(elementA);
         var residueB = infoB.unit.getResidueIndex(elementB);
-        var keyA = elementA + "|" + infoA.unit.id + "|" + residueB + "|" + infoB.unit.id + "|A";
-        var keyB = elementB + "|" + infoB.unit.id + "|" + residueA + "|" + infoA.unit.id + "|B";
+        var keyA = "".concat(elementA, "|").concat(infoA.unit.id, "|").concat(residueB, "|").concat(infoB.unit.id, "|A");
+        var keyB = "".concat(elementB, "|").concat(infoB.unit.id, "|").concat(residueA, "|").concat(infoA.unit.id, "|B");
         var dist = features_1.Features.distance(infoA, infoB);
         handleResidueContact(dist, edge, keyA, map, set);
         handleResidueContact(dist, edge, keyB, map, set);

package/lib/commonjs/mol-model-props/computed/interactions/refine.js.map

@@ -1 +1 @@
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package/lib/commonjs/mol-model-props/computed/representations/interactions-inter-unit-cylinder.d.ts

@@ -13,17 +13,20 @@ export declare const InteractionsInterUnitParams: {
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type InteractionsInterUnitParams = typeof InteractionsInterUnitParams;
 export declare function InteractionsInterUnitVisual(materialId: number): ComplexVisual<InteractionsInterUnitParams>;

package/lib/commonjs/mol-model-props/computed/representations/interactions-intra-unit-cylinder.d.ts

@@ -13,17 +13,20 @@ export declare const InteractionsIntraUnitParams: {
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
     flatShaded: PD.BooleanParam;
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type InteractionsIntraUnitParams = typeof InteractionsIntraUnitParams;
 export declare function InteractionsIntraUnitVisual(materialId: number): UnitsVisual<InteractionsIntraUnitParams>;

package/lib/commonjs/mol-model-props/computed/representations/interactions.d.ts

@@ -9,7 +9,7 @@ import { ThemeRegistryContext } from '../../../mol-theme/theme';
 import { Structure } from '../../../mol-model/structure';
 import { StructureRepresentation, StructureRepresentationProvider } from '../../../mol-repr/structure/representation';
 export declare const InteractionsParams: {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     sizeFactor: PD.Numeric;
     visuals: PD.MultiSelect<"intra-unit" | "inter-unit">;
     dashCount: PD.Numeric;
@@ -18,6 +18,9 @@ export declare const InteractionsParams: {
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
@@ -27,11 +30,11 @@ export declare const InteractionsParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type InteractionsParams = typeof InteractionsParams;
 export declare function getInteractionParams(ctx: ThemeRegistryContext, structure: Structure): {
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     sizeFactor: PD.Numeric;
     visuals: PD.MultiSelect<"intra-unit" | "inter-unit">;
     dashCount: PD.Numeric;
@@ -40,6 +43,9 @@ export declare function getInteractionParams(ctx: ThemeRegistryContext, structur
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
@@ -49,12 +55,12 @@ export declare function getInteractionParams(ctx: ThemeRegistryContext, structur
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type InteractionRepresentation = StructureRepresentation<InteractionsParams>;
 export declare function InteractionRepresentation(ctx: RepresentationContext, getParams: RepresentationParamsGetter<Structure, InteractionsParams>): InteractionRepresentation;
 export declare const InteractionsRepresentationProvider: StructureRepresentationProvider<{
-    unitKinds: PD.MultiSelect<"spheres" | "atomic" | "gaussians">;
+    unitKinds: PD.MultiSelect<"spheres" | "gaussians" | "atomic">;
     sizeFactor: PD.Numeric;
     visuals: PD.MultiSelect<"intra-unit" | "inter-unit">;
     dashCount: PD.Numeric;
@@ -63,6 +69,9 @@ export declare const InteractionsRepresentationProvider: StructureRepresentation
     linkScale: PD.Numeric;
     linkSpacing: PD.Numeric;
     linkCap: PD.BooleanParam;
+    aromaticScale: PD.Numeric;
+    aromaticSpacing: PD.Numeric;
+    aromaticDashCount: PD.Numeric;
     dashCap: PD.BooleanParam;
     stubCap: PD.BooleanParam;
     radialSegments: PD.Numeric;
@@ -72,5 +81,5 @@ export declare const InteractionsRepresentationProvider: StructureRepresentation
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 }, "interactions">;

package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/property.js

@@ -66,7 +66,7 @@ var CrossLinkRestraint;
     CrossLinkRestraint.areLocationsEqual = areLocationsEqual;
     function _label(crossLinkRestraints, element) {
         var p = crossLinkRestraints.pairs[element];
-        return "Cross Link Restraint | Type: " + p.restraintType + " | Threshold: " + p.distanceThreshold + " \u212B | Psi: " + p.psi + " | Sigma 1: " + p.sigma1 + " | Sigma 2: " + p.sigma2 + " | Distance: " + distance(p).toFixed(2) + " \u212B";
+        return "Cross Link Restraint | Type: ".concat(p.restraintType, " | Threshold: ").concat(p.distanceThreshold, " \u212B | Psi: ").concat(p.psi, " | Sigma 1: ").concat(p.sigma1, " | Sigma 2: ").concat(p.sigma2, " | Distance: ").concat(distance(p).toFixed(2), " \u212B");
     }
     function locationLabel(location) {
         return _label(location.data.crossLinkRestraints, location.element);

package/lib/commonjs/mol-model-props/integrative/cross-link-restraint/property.js.map

@@ -1 +1 @@
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