npm - molstar - Versions diffs - 2.3.3 → 2.3.8 - Mend

molstar 2.3.3 → 2.3.8

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (1829) hide show

package/lib/commonjs/mol-plugin/behavior/dynamic/selection/structure-focus-representation.js.map CHANGED Viewed

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1	+ {"version":3,"file":"structure-focus-representation.js","sourceRoot":"","sources":["../../../../../../src/mol-plugin/behavior/dynamic/selection/structure-focus-representation.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;;AAEH,kGAAuH;AACvH,iGAAiH;AACjH,6DAAmE;AACnE,wHAA2H;AAE3H,sEAA0E;AAC1E,8CAAmD;AACnD,mEAAiF;AACjF,mDAAwF;AACxF,mDAAuD;AACvD,0EAA8E;AAC9E,8CAAmD;AAGnD,IAAM,kCAAkC,GAAG,UAAC,MAAqB;IAC7D,IAAM,UAAU,GAAG,4BAAe,CAAC,cAAc,CAAC,yBAAyB,CAAC,UAAU,CAAC,MAAO,CAAC,KAAK,CAAC,EAAE,MAAM,CAAc,CAAC;IAC5H,OAAO;QACH,YAAY,EAAE,kCAAE,CAAC,OAAO,CAAC,CAAC,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,CAAC,EAAE,CAAC;QACzD,YAAY,EAAE,kCAAE,CAAC,KAAK,CAAC,UAAU,EAAE;YAC/B,KAAK,EAAE,QAAQ;YACf,aAAa,EAAE,IAAA,qEAAmC,EAAC,MAAM,EAAE,KAAK,CAAC,EAAE,EAAE,IAAI,EAAE,gBAAgB,EAAE,IAAI,EAAE,UAAU,EAAE,UAAU,EAAE,EAAE,UAAU,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,oBAAoB,EAAE,IAAI,EAAE,EAAE,CAAC;SAC9L,CAAC;QACF,kBAAkB,EAAE,kCAAE,CAAC,KAAK,CAAC,UAAU,EAAE;YACrC,KAAK,EAAE,cAAc;YACrB,aAAa,EAAE,IAAA,qEAAmC,EAAC,MAAM,EAAE,KAAK,CAAC,EAAE,EAAE,IAAI,EAAE,gBAAgB,EAAE,IAAI,EAAE,UAAU,EAAE,UAAU,EAAE,EAAE,UAAU,EAAE,IAAI,EAAE,EAAE,CAAC;SACrJ,CAAC;QACF,SAAS,EAAE,kCAAE,CAAC,KAAK,CAAC,UAAU,EAAE;YAC5B,KAAK,EAAE,mBAAmB;YAC1B,aAAa,EAAE,IAAA,qEAAmC,EAAC,MAAM,EAAE,KAAK,CAAC,EAAE;gBAC/D,IAAI,EAAE,iDAAkC;gBACxC,KAAK,EAAE,oDAAiC;gBACxC,IAAI,EAAE,gBAAS,CAAC,OAAO,CAAC,OAAO;aAClC,CAAC;SACL,CAAC;QACF,UAAU,EAAE,kCAAE,CAAC,WAAW,CAAC,eAAe,EAAE,kCAAE,CAAC,cAAc,CAAC,eAAe,CAAC,CAAC;QAC/E,6BAA6B,EAAE,kCAAE,CAAC,OAAO,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,gBAAgB,EAAE,WAAW,EAAE,4DAA4D,EAAE,CAAC;QACxJ,eAAe,EAAE,kCAAE,CAAC,OAAO,CAAC,KAAK,CAAC;KACrC,CAAC;AACN,CAAC,CAAC;AAEF,IAAM,eAAe,GAAG,CAAC,QAAiB,EAAE,cAAuB,EAAE,cAAuB,CAAC,CAAC;AAI9F,IAAY,gCAMX;AAND,WAAY,gCAAgC;IACxC,4EAAwC,CAAA;IACxC,8EAA0C,CAAA;IAC1C,wEAAoC,CAAA;IACpC,0EAAsC,CAAA;IACtC,iFAA6C,CAAA;AACjD,CAAC,EANW,gCAAgC,GAAhC,wCAAgC,KAAhC,wCAAgC,QAM3C;AAED,IAAM,MAAM,GAA0C,IAAI,GAAG,CAAC,CAAC,gCAAgC,CAAC,SAAS,EAAE,gCAAgC,CAAC,UAAU,EAAE,gCAAgC,CAAC,OAAO,EAAE,gCAAgC,CAAC,QAAQ,EAAE,gCAAgC,CAAC,WAAW,CAAC,CAAC,CAAC;AAE5R;IAAmD,qEAAiE;IAApH;QAAA,qEAuKC;QAxFW,mBAAa,GAAsC,KAAK,CAAC,CAAC;;IAwFtE,CAAC;IAtKG,sBAAY,2DAAS;aAArB,cAA0B,OAAO,gCAAyB,IAAI,CAAC,MAAM,CAAC,YAAY,aAAK,CAAC,CAAC,CAAC;;;OAAA;IAElF,4DAAa,GAArB,UAAsB,UAAgC;QAClD,uDACO,IAAI,CAAC,MAAM,CAAC,YAAY,KAC3B,IAAI,EAAE;gBACF,IAAI,EAAE,UAAU,CAAC,IAAI,CAAC,IAAI;gBAC1B,MAAM,kDAAO,UAAU,CAAC,IAAI,CAAC,MAAM,KAAE,eAAe,EAAE,IAAI,CAAC,MAAM,CAAC,eAAe,GAAE;aACtF,IACH;IACN,CAAC;IAEO,0DAAW,GAAnB,UAAoB,IAA2D;;QAC3E,IAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,EAAE,IAAI,GAAG,KAAK,CAAC,IAAI,CAAC;QACxD,IAAM,OAAO,GAAG,KAAK,CAAC,KAAK,EAAE,CAAC;QAC9B,IAAM,IAAI,GAAG,0BAAc,CAAC,uBAAuB,CAAC,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC,GAAG,EAAE,MAAM,CAAC,CAAC;QAEtF,aAAa;QACb,IAAI,CAAC,IAAI,CAAC,gCAAgC,CAAC,SAAS,CAAC,EAAE;YACnD,IAAI,CAAC,gCAAgC,CAAC,SAAS,CAAC,GAAG,OAAO;iBACrD,EAAE,CAAC,IAAI,CAAC;iBACR,KAAK,CAAC,4BAAe,CAAC,KAAK,CAAC,4BAA4B,EACrD,EAAE,MAAM,EAAE,4BAAgB,CAAC,MAAM,CAAC,KAAK,EAAE,KAAK,EAAE,gBAAgB,EAAE,EAAE,EAAE,IAAI,EAAE,gCAAgC,CAAC,SAAS,EAAE,CAAC,CAAC,GAAG,CAAC;SACzI;QAED,IAAI,CAAC,IAAI,CAAC,gCAAgC,CAAC,OAAO,CAAC,EAAE;YACjD,IAAI,CAAC,gCAAgC,CAAC,OAAO,CAAC,GAAG,OAAO;iBACnD,EAAE,CAAC,IAAI,CAAC;iBACR,KAAK,CAAC,4BAAe,CAAC,KAAK,CAAC,gCAAgC,EACzD,EAAE,UAAU,EAAE,0BAAE,CAAC,MAAM,CAAC,SAAS,CAAC,KAAK,EAAE,EAAE,KAAK,EAAE,IAAI,CAAC,SAAS,EAAE,EAAE,EAAE,IAAI,EAAE,gCAAgC,CAAC,OAAO,EAAE,CAAC,CAAC,GAAG,CAAC;SACvI;QAED,IAAM,UAAU,GAAG,IAAI,CAAC,MAAM,CAAC,UAAU,CAAC;QAE1C,kBAAkB;QAClB,IAAI,UAAU,CAAC,OAAO,CAAC,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,gCAAgC,CAAC,UAAU,CAAC,EAAE;YACzF,IAAI,CAAC,gCAAgC,CAAC,UAAU,CAAC,GAAG,OAAO;iBACtD,EAAE,CAAC,IAAI,CAAC,gCAAgC,CAAC,SAAS,CAAE,CAAC;iBACrD,KAAK,CAAC,4BAAe,CAAC,cAAc,CAAC,yBAAyB,EAAE,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,MAAM,CAAC,YAAY,CAAC,EAAE,EAAE,IAAI,EAAE,gCAAgC,CAAC,UAAU,EAAE,CAAC,CAAC,GAAG,CAAC;SACjL;QAED,IAAI,UAAU,CAAC,OAAO,CAAC,cAAc,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,gCAAgC,CAAC,QAAQ,CAAC,EAAE;YAC7F,IAAI,CAAC,gCAAgC,CAAC,QAAQ,CAAC,GAAG,OAAO;iBACpD,EAAE,CAAC,IAAI,CAAC,gCAAgC,CAAC,OAAO,CAAE,CAAC;iBACnD,KAAK,CAAC,4BAAe,CAAC,cAAc,CAAC,yBAAyB,EAAE,IAAI,CAAC,aAAa,CAAC,IAAI,CAAC,MAAM,CAAC,kBAAkB,CAAC,EAAE,EAAE,IAAI,EAAE,gCAAgC,CAAC,QAAQ,EAAE,CAAC,CAAC,GAAG,CAAC;SACrL;QAED,IAAI,UAAU,CAAC,OAAO,CAAC,cAAc,CAAC,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,gCAAgC,CAAC,WAAW,CAAC,IAAI,IAAI,CAAC,GAAG,IAAI,iDAAkC,CAAC,YAAY,CAAC,MAAA,IAAI,CAAC,GAAG,0CAAE,IAAI,CAAC,EAAE;YAC/K,IAAI,CAAC,gCAAgC,CAAC,WAAW,CAAC,GAAG,OAAO;iBACvD,EAAE,CAAC,IAAI,CAAC,gCAAgC,CAAC,OAAO,CAAE,CAAC;iBACnD,KAAK,CAAC,4BAAe,CAAC,cAAc,CAAC,yBAAyB,EAAE,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,EAAE,IAAI,EAAE,gCAAgC,CAAC,WAAW,EAAE,CAAC,CAAC,GAAG,CAAC;SAC3J;QAED,OAAO,EAAE,KAAK,OAAA,EAAE,OAAO,SAAA,EAAE,IAAI,MAAA,EAAE,CAAC;IACpC,CAAC;IAEO,oDAAK,GAAb,UAAc,IAAwB;QAClC,IAAM,KAAK,GAAG,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC;QACrC,IAAI,CAAC,aAAa,GAAG,KAAK,CAAC,CAAC;QAE5B,IAAM,IAAI,GAAG,KAAK,CAAC,MAAM,CAAC,0BAAc,CAAC,UAAU,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC,OAAO,EAAE,CAAC,OAAO,CAAC,gCAAgC,CAAC,SAAS,CAAC,CAAC,CAAC;QAC/H,IAAM,KAAK,GAAG,KAAK,CAAC,MAAM,CAAC,0BAAc,CAAC,UAAU,CAAC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package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.d.ts CHANGED Viewed

@@ -50,19 +50,19 @@ export declare namespace VolumeStreaming {
     }): {
         entry: PD.Mapped<PD.NamedParams<PD.Values<{
             view: PD.Mapped<PD.NamedParams<PD.Normalize<{
-                bottomLeft: Vec3;
-                topRight: Vec3;
-            }>, "box"> | PD.NamedParams<PD.Normalize<{
                 radius: number;
                 selectionDetailLevel: number;
                 isSelection: boolean;
                 bottomLeft: Vec3;
                 topRight: Vec3;
-            }>, "auto"> | PD.NamedParams<PD.Normalize<{}>, "off"> | PD.NamedParams<PD.Normalize<{
+            }>, "auto"> | PD.NamedParams<PD.Normalize<{}>, "cell"> | PD.NamedParams<PD.Normalize<{}>, "off"> | PD.NamedParams<PD.Normalize<{
+                bottomLeft: Vec3;
+                topRight: Vec3;
+            }>, "box"> | PD.NamedParams<PD.Normalize<{
                 radius: number;
                 bottomLeft: Vec3;
                 topRight: Vec3;
-            }>, "selection-box"> | PD.NamedParams<PD.Normalize<{}>, "cell">>;
+            }>, "selection-box">>;
             detailLevel: PD.Select<number>;
             channels: PD.Group<PD.Normalize<{
                 em: PD.Normalize<ChannelParams>;
@@ -82,19 +82,19 @@ export declare namespace VolumeStreaming {
         channelParams?: DefaultChannelParams;
     }): {
         view: PD.Mapped<PD.NamedParams<PD.Normalize<{
-            bottomLeft: Vec3;
-            topRight: Vec3;
-        }>, "box"> | PD.NamedParams<PD.Normalize<{
             radius: number;
             selectionDetailLevel: number;
             isSelection: boolean;
             bottomLeft: Vec3;
             topRight: Vec3;
-        }>, "auto"> | PD.NamedParams<PD.Normalize<{}>, "off"> | PD.NamedParams<PD.Normalize<{
+        }>, "auto"> | PD.NamedParams<PD.Normalize<{}>, "cell"> | PD.NamedParams<PD.Normalize<{}>, "off"> | PD.NamedParams<PD.Normalize<{
+            bottomLeft: Vec3;
+            topRight: Vec3;
+        }>, "box"> | PD.NamedParams<PD.Normalize<{
             radius: number;
             bottomLeft: Vec3;
             topRight: Vec3;
-        }>, "selection-box"> | PD.NamedParams<PD.Normalize<{}>, "cell">>;
+        }>, "selection-box">>;
         detailLevel: PD.Select<number>;
         channels: PD.Group<PD.Normalize<{
             em: PD.Normalize<ChannelParams>;

package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.js CHANGED Viewed

@@ -85,13 +85,13 @@ exports.VolumeStreaming = VolumeStreaming;
                 // Show selection-box if available and cell otherwise.
                 'auto': param_definition_1.ParamDefinition.Group({
                     radius: param_definition_1.ParamDefinition.Numeric(5, { min: 0, max: 50, step: 0.5 }, { description: 'Radius in \u212B within which the volume is shown.' }),
-                    selectionDetailLevel: param_definition_1.ParamDefinition.Select(Math.min(6, info.header.availablePrecisions.length - 1), info.header.availablePrecisions.map(function (p, i) { return [i, i + 1 + " [ " + (Math.pow(p.maxVoxels, 1 / 3) | 0) + "^3 cells ]"]; }), { label: 'Selection Detail', description: 'Determines the maximum number of voxels. Depending on the size of the volume options are in the range from 0 (0.52M voxels) to 6 (25.17M voxels).' }),
+                    selectionDetailLevel: param_definition_1.ParamDefinition.Select(Math.min(6, info.header.availablePrecisions.length - 1), info.header.availablePrecisions.map(function (p, i) { return [i, "".concat(i + 1, " [ ").concat(Math.pow(p.maxVoxels, 1 / 3) | 0, "^3 cells ]")]; }), { label: 'Selection Detail', description: 'Determines the maximum number of voxels. Depending on the size of the volume options are in the range from 0 (0.52M voxels) to 6 (25.17M voxels).' }),
                     isSelection: param_definition_1.ParamDefinition.Boolean(false, { isHidden: true }),
                     bottomLeft: param_definition_1.ParamDefinition.Vec3(box.min, {}, { isHidden: true }),
                     topRight: param_definition_1.ParamDefinition.Vec3(box.max, {}, { isHidden: true }),
                 }, { description: 'Box around focused element.', isFlat: true })
             }, { options: VolumeStreaming.ViewTypeOptions, description: 'Controls what of the volume is displayed. "Off" hides the volume alltogether. "Bounded box" shows the volume inside the given box. "Around Interaction" shows the volume around the focused element/atom. "Whole Structure" shows the volume for the whole structure.' }),
-            detailLevel: param_definition_1.ParamDefinition.Select(Math.min(3, info.header.availablePrecisions.length - 1), info.header.availablePrecisions.map(function (p, i) { return [i, i + 1 + " [ " + (Math.pow(p.maxVoxels, 1 / 3) | 0) + "^3 cells ]"]; }), { description: 'Determines the maximum number of voxels. Depending on the size of the volume options are in the range from 0 (0.52M voxels) to 6 (25.17M voxels).' }),
+            detailLevel: param_definition_1.ParamDefinition.Select(Math.min(3, info.header.availablePrecisions.length - 1), info.header.availablePrecisions.map(function (p, i) { return [i, "".concat(i + 1, " [ ").concat(Math.pow(p.maxVoxels, 1 / 3) | 0, "^3 cells ]")]; }), { description: 'Determines the maximum number of voxels. Depending on the size of the volume options are in the range from 0 (0.52M voxels) to 6 (25.17M voxels).' }),
             channels: info.kind === 'em'
                 ? param_definition_1.ParamDefinition.Group({
                     'em': channelParam('EM', (0, color_1.Color)(0x638F8F), info.emDefaultContourLevel || volume_1.Volume.IsoValue.relative(1), info.header.sampling[0].valuesInfo[0], channelParams['em'])
@@ -135,12 +135,12 @@ exports.VolumeStreaming = VolumeStreaming;
                 return (0, tslib_1.__generator)(this, function (_a) {
                     switch (_a.label) {
                         case 0:
-                            url = (0, url_1.urlCombine)(this.data.serverUrl, this.info.kind + "/" + this.info.dataId.toLowerCase());
+                            url = (0, url_1.urlCombine)(this.data.serverUrl, "".concat(this.info.kind, "/").concat(this.info.dataId.toLowerCase()));
                             if (box) {
                                 a = box.min, b = box.max;
                                 url += "/box"
-                                    + ("/" + a.map(function (v) { return Math.round(1000 * v) / 1000; }).join(','))
-                                    + ("/" + b.map(function (v) { return Math.round(1000 * v) / 1000; }).join(','));
+                                    + "/".concat(a.map(function (v) { return Math.round(1000 * v) / 1000; }).join(','))
+                                    + "/".concat(b.map(function (v) { return Math.round(1000 * v) / 1000; }).join(','));
                             }
                             else {
                                 url += "/cell";
@@ -149,7 +149,7 @@ exports.VolumeStreaming = VolumeStreaming;
                             if (this.params.entry.params.view.name === 'auto' && this.params.entry.params.view.params.isSelection) {
                                 detail = this.params.entry.params.view.params.selectionDetailLevel;
                             }
-                            url += "?detail=" + detail;
+                            url += "?detail=".concat(detail);
                             entry = lru_cache_1.LRUCache.get(this.cache, url);
                             if (entry)
                                 return [2 /*return*/, entry.data];

package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/behavior.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/model.d.ts CHANGED Viewed

@@ -9,12 +9,12 @@ import { Volume } from '../../../../mol-model/volume';
 import { Structure } from '../../../../mol-model/structure';
 declare const VolumeServerInfo_base: {
     new (data: VolumeServerInfo.Data, props?: {
-        /** Precision data the server can show. */
-        label: string;
+        label: string; /** Precision data the server can show. */
         description?: string | undefined;
     } | undefined): {
         id: import("../../../../mol-util/uuid").UUID;
         type: PluginStateObject.TypeInfo;
+        /** The value are stored in blockSize^3 cubes */
         label: string;
         description?: string | undefined;
         data: VolumeServerInfo.Data;
@@ -23,6 +23,7 @@ declare const VolumeServerInfo_base: {
     is(obj?: import("../../../../mol-state/object").StateObject<any, import("../../../../mol-state/object").StateObject.Type<any>> | undefined): obj is {
         id: import("../../../../mol-util/uuid").UUID;
         type: PluginStateObject.TypeInfo;
+        /** The value are stored in blockSize^3 cubes */
         label: string;
         description?: string | undefined;
         data: VolumeServerInfo.Data;

package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.d.ts CHANGED Viewed

@@ -29,9 +29,9 @@ declare const CreateVolumeStreamingInfo: StateTransformer<SO.Molecule.Structure,
     serverUrl: string;
     entries: PD.Normalize<PD.Values<{
         dataId: PD.Text<string>;
-        source: PD.Mapped<PD.NamedParams<PD.Normalize<unknown>, "x-ray"> | PD.NamedParams<PD.Normalize<{
+        source: PD.Mapped<PD.NamedParams<PD.Normalize<{
             isoValue: any;
-        }>, "em">>;
+        }>, "em"> | PD.NamedParams<PD.Normalize<unknown>, "x-ray">>;
     }>>[];
 }>>;
 export { CreateVolumeStreamingBehavior };
@@ -39,19 +39,19 @@ declare type CreateVolumeStreamingBehavior = typeof CreateVolumeStreamingBehavio
 declare const CreateVolumeStreamingBehavior: StateTransformer<VolumeServerInfo, VolumeStreaming, PD.Normalize<{
     entry: PD.NamedParams<PD.Values<{
         view: PD.Mapped<PD.NamedParams<PD.Normalize<{
-            bottomLeft: any;
-            topRight: any;
-        }>, "box"> | PD.NamedParams<PD.Normalize<{
             radius: any;
             selectionDetailLevel: any;
             isSelection: any;
             bottomLeft: any;
             topRight: any;
-        }>, "auto"> | PD.NamedParams<PD.Normalize<{}>, "off"> | PD.NamedParams<PD.Normalize<{
+        }>, "auto"> | PD.NamedParams<PD.Normalize<{}>, "cell"> | PD.NamedParams<PD.Normalize<{}>, "off"> | PD.NamedParams<PD.Normalize<{
+            bottomLeft: any;
+            topRight: any;
+        }>, "box"> | PD.NamedParams<PD.Normalize<{
             radius: any;
             bottomLeft: any;
             topRight: any;
-        }>, "selection-box"> | PD.NamedParams<PD.Normalize<{}>, "cell">>;
+        }>, "selection-box">>;
         detailLevel: PD.Select<number>;
         channels: PD.Group<PD.Normalize<{
             em: any;

package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.js CHANGED Viewed

@@ -97,7 +97,7 @@ exports.InitVolumeStreaming = mol_state_1.StateAction.build({
                     return [3 /*break*/, 8];
                 case 7:
                     e_1 = _a.sent();
-                    console.info("Could not get map info for " + emdbId + ": " + e_1);
+                    console.info("Could not get map info for ".concat(emdbId, ": ").concat(e_1));
                     return [3 /*break*/, 9];
                 case 8:
                     addEntry(entries, params.method, emdbId, contourLevel || 0);
@@ -114,7 +114,7 @@ exports.InitVolumeStreaming = mol_state_1.StateAction.build({
                     return [3 /*break*/, 14];
                 case 13:
                     e_2 = _a.sent();
-                    console.info("Could not get map info for " + dataId + ": " + e_2);
+                    console.info("Could not get map info for ".concat(dataId, ": ").concat(e_2));
                     return [3 /*break*/, 15];
                 case 14:
                     addEntry(entries, params.method, dataId, emDefaultContourLevel || 0);
@@ -227,7 +227,7 @@ var CreateVolumeStreamingInfo = objects_1.PluginStateTransform.BuiltIn({
                         return [4 /*yield*/, taskCtx.update('Getting server header...')];
                     case 2:
                         _a.sent();
-                        return [4 /*yield*/, plugin.fetch({ url: (0, url_1.urlCombine)(params.serverUrl, e.source.name + "/" + dataId.toLocaleLowerCase()), type: 'json' }).runInContext(taskCtx)];
+                        return [4 /*yield*/, plugin.fetch({ url: (0, url_1.urlCombine)(params.serverUrl, "".concat(e.source.name, "/").concat(dataId.toLocaleLowerCase())), type: 'json' }).runInContext(taskCtx)];
                     case 3:
                         header = _a.sent();
                         entries.push({
@@ -246,7 +246,7 @@ var CreateVolumeStreamingInfo = objects_1.PluginStateTransform.BuiltIn({
                             entries: entries,
                             structure: a.data
                         };
-                        return [2 /*return*/, new model_1.VolumeServerInfo(data, { label: 'Volume Server', description: "" + entries.map(function (e) { return e.dataId; }).join(', ') })];
+                        return [2 /*return*/, new model_1.VolumeServerInfo(data, { label: 'Volume Server', description: "".concat(entries.map(function (e) { return e.dataId; }).join(', ')) })];
                 }
             });
         }); });
@@ -343,7 +343,7 @@ var VolumeStreamingVisual = objects_1.PluginStateTransform.BuiltIn({
                         _c.sent();
                         if (transform)
                             repr.setState({ transform: transform });
-                        return [2 /*return*/, new objects_1.PluginStateObject.Volume.Representation3D({ repr: repr, sourceData: channel.data }, { label: Math.round(channel.isoValue.relativeValue * 100) / 100 + " \u03C3 [" + srcParams.channel + "]" })];
+                        return [2 /*return*/, new objects_1.PluginStateObject.Volume.Representation3D({ repr: repr, sourceData: channel.data }, { label: "".concat(Math.round(channel.isoValue.relativeValue * 100) / 100, " \u03C3 [").concat(srcParams.channel, "]") })];
                 }
             });
         }); });

package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/transformers.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/util.js CHANGED Viewed

@@ -81,7 +81,7 @@ function getContourLevelEmdb(plugin, taskCtx, emdbId) {
             switch (_a.label) {
                 case 0:
                     emdbHeaderServer = plugin.config.get(config_1.PluginConfig.VolumeStreaming.EmdbHeaderServer);
-                    return [4 /*yield*/, plugin.fetch({ url: emdbHeaderServer + "/" + emdbId.toUpperCase() + "/header/" + emdbId.toLowerCase() + ".xml", type: 'xml' }).runInContext(taskCtx)];
+                    return [4 /*yield*/, plugin.fetch({ url: "".concat(emdbHeaderServer, "/").concat(emdbId.toUpperCase(), "/header/").concat(emdbId.toLowerCase(), ".xml"), type: 'xml' }).runInContext(taskCtx)];
                 case 1:
                     header = _a.sent();
                     map = header.getElementsByTagName('map')[0];
@@ -101,7 +101,7 @@ function getContourLevelPdbe(plugin, taskCtx, emdbId) {
                 case 0:
                     // TODO: parametrize URL in plugin settings?
                     emdbId = emdbId.toUpperCase();
-                    return [4 /*yield*/, plugin.fetch({ url: "https://www.ebi.ac.uk/emdb/api/entry/map/" + emdbId, type: 'json' }).runInContext(taskCtx)];
+                    return [4 /*yield*/, plugin.fetch({ url: "https://www.ebi.ac.uk/emdb/api/entry/map/".concat(emdbId), type: 'json' }).runInContext(taskCtx)];
                 case 1:
                     header = _e.sent();
                     contours = (_b = (_a = header === null || header === void 0 ? void 0 : header.map) === null || _a === void 0 ? void 0 : _a.contour_list) === null || _b === void 0 ? void 0 : _b.contour;
@@ -124,7 +124,7 @@ function getContourLevelPdbeLegacy(plugin, taskCtx, emdbId) {
                 case 0:
                     // TODO: parametrize URL in plugin settings?
                     emdbId = emdbId.toUpperCase();
-                    return [4 /*yield*/, plugin.fetch({ url: "https://www.ebi.ac.uk/pdbe/api/emdb/entry/map/" + emdbId, type: 'json' }).runInContext(taskCtx)];
+                    return [4 /*yield*/, plugin.fetch({ url: "https://www.ebi.ac.uk/pdbe/api/emdb/entry/map/".concat(emdbId), type: 'json' }).runInContext(taskCtx)];
                 case 1:
                     header = _d.sent();
                     emdbEntry = header === null || header === void 0 ? void 0 : header[emdbId];
@@ -143,7 +143,7 @@ function getEmdbIds(plugin, taskCtx, pdbId) {
         var summary, summaryEntry, emdbIds, emdb;
         return (0, tslib_1.__generator)(this, function (_b) {
             switch (_b.label) {
-                case 0: return [4 /*yield*/, plugin.fetch({ url: "https://www.ebi.ac.uk/pdbe/api/pdb/entry/summary/" + pdbId, type: 'json' }).runInContext(taskCtx)];
+                case 0: return [4 /*yield*/, plugin.fetch({ url: "https://www.ebi.ac.uk/pdbe/api/pdb/entry/summary/".concat(pdbId), type: 'json' }).runInContext(taskCtx)];
                 case 1:
                     summary = _b.sent();
                     summaryEntry = summary === null || summary === void 0 ? void 0 : summary[pdbId];
@@ -151,12 +151,12 @@ function getEmdbIds(plugin, taskCtx, pdbId) {
                     if ((_a = summaryEntry === null || summaryEntry === void 0 ? void 0 : summaryEntry[0]) === null || _a === void 0 ? void 0 : _a.related_structures) {
                         emdb = summaryEntry[0].related_structures.filter(function (s) { return s.resource === 'EMDB' && s.relationship === 'associated EM volume'; });
                         if (!emdb.length) {
-                            throw new Error("No related EMDB entry found for '" + pdbId + "'.");
+                            throw new Error("No related EMDB entry found for '".concat(pdbId, "'."));
                         }
                         emdbIds.push.apply(emdbIds, emdb.map(function (e) { return e.accession; }));
                     }
                     else {
-                        throw new Error("No related EMDB entry found for '" + pdbId + "'.");
+                        throw new Error("No related EMDB entry found for '".concat(pdbId, "'."));
                     }
                     return [2 /*return*/, emdbIds];
             }

package/lib/commonjs/mol-plugin/behavior/dynamic/volume-streaming/util.js.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"util.js","sourceRoot":"","sources":["../../../../../../src/mol-plugin/behavior/dynamic/volume-streaming/util.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;;AAEH,6DAAmE;AAInE,uEAA4E;AAC5E,0CAA+C;AAE/C,SAAgB,kBAAkB,CAAC,CAAa,EAAE,WAA4C;IAA5C,4BAAA,EAAA,qBAA4C;IAC1F,IAAI,CAAC,CAAC;QAAE,OAAO,WAAW,CAAC;IAE3B,IAAM,KAAK,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;IAC1B,IAAI,CAAC,mBAAW,CAAC,EAAE,CAAC,KAAK,CAAC,UAAU,CAAC;QAAE,OAAO,WAAW,CAAC;IAE1D,8FAA8F;IAC9F,8FAA8F;IAC9F,IAAI,iBAAK,CAAC,QAAQ,CAAC,KAAK,CAAC;QAAE,OAAO,IAAI,CAAC;IACvC,IAAI,iBAAK,CAAC,UAAU,CAAC,KAAK,CAAC;QAAE,OAAO,OAAO,CAAC;IAE5C,yCAAyC;IACzC,IAAI,iBAAK,CAAC,QAAQ,CAAC,KAAK,CAAC;QAAE,OAAO,IAAI,CAAC;IACvC,IAAI,iBAAK,CAAC,UAAU,CAAC,KAAK,CAAC;QAAE,OAAO,OAAO,CAAC;IAC5C,OAAO,WAAW,CAAC;AACvB,CAAC;AAfD,gDAeC;AAED,oEAAoE;AACpE,SAAgB,QAAQ,CAAC,KAAY;IACjC,IAAM,GAAG,GAAa,EAAE,CAAC;IACzB,IAAI,CAAC,mBAAW,CAAC,EAAE,CAAC,KAAK,CAAC,UAAU,CAAC;QAAE,OAAO,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC;IAExD,IAAA,KAAmC,KAAK,CAAC,UAAU,CAAC,IAAI,CAAC,EAAE,CAAC,qBAAqB,EAA/E,KAAK,WAAA,EAAE,OAAO,aAAA,EAAE,YAAY,kBAAmD,CAAC;IACxF,IAAI,CAAC,OAAO,CAAC,SAAS;QAAE,OAAO,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC;IAE/C,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,OAAO,CAAC,QAAQ,EAAE,CAAC,GAAG,EAAE,EAAE,EAAE,CAAC,EAAE;QAChD,IAAI,OAAO,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,KAAK,MAAM,IAAI,YAAY,CAAC,KAAK,CAAC,CAAC,CAAC,KAAK,sBAAsB,EAAE;YAC/F,GAAG,CAAC,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;SAC5B;KACJ;IAED,OAAO,GAAG,CAAC;AACf,CAAC;AAdD,4BAcC;AAED,SAAgB,UAAU,CAAC,KAAY;IACnC,OAAO,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC;AAC3B,CAAC;AAFD,gCAEC;AAED,SAAgB,MAAM,CAAC,MAA6B,EAAE,CAAa;IAC/D,IAAI,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,MAAM,CAAC,MAAM;QAAE,OAAO,EAAE,CAAC;IACtC,IAAM,KAAK,GAAG,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;IAC1B,QAAQ,MAAM,EAAE;QACZ,KAAK,IAAI,CAAC,CAAC,OAAO,QAAQ,CAAC,KAAK,CAAC,CAAC;QAClC,KAAK,OAAO,CAAC,CAAC,OAAO,UAAU,CAAC,KAAK,CAAC,CAAC;KAC1C;AACL,CAAC;AAPD,wBAOC;AAED,SAAsB,eAAe,CAAC,QAAyB,EAAE,MAAqB,EAAE,OAAuB,EAAE,MAAc;;;YAC3H,QAAQ,QAAQ,EAAE;gBACd,KAAK,MAAM,CAAC,CAAC,sBAAO,mBAAmB,CAAC,MAAM,EAAE,OAAO,EAAE,MAAM,CAAC,EAAC;gBACjE,KAAK,MAAM,CAAC,CAAC,sBAAO,mBAAmB,CAAC,MAAM,EAAE,OAAO,EAAE,MAAM,CAAC,EAAC;aACpE;;;;CACJ;AALD,0CAKC;AAED,SAAsB,mBAAmB,CAAC,MAAqB,EAAE,OAAuB,EAAE,MAAc;;;;;;oBAC9F,gBAAgB,GAAG,MAAM,CAAC,MAAM,CAAC,GAAG,CAAC,qBAAY,CAAC,eAAe,CAAC,gBAAgB,CAAC,CAAC;oBAC3E,qBAAM,MAAM,CAAC,KAAK,CAAC,EAAE,GAAG,EAAE,UAAG,gBAAgB,cAAI,MAAM,CAAC,WAAW,EAAE,qBAAW,MAAM,CAAC,WAAW,EAAE,SAAM,EAAE,IAAI,EAAE,KAAK,EAAE,CAAC,CAAC,YAAY,CAAC,OAAO,CAAC,EAAA;;oBAAzJ,MAAM,GAAG,SAAgJ;oBACzJ,GAAG,GAAG,MAAM,CAAC,oBAAoB,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,CAAC;oBAC5C,YAAY,GAAG,UAAU,CAAC,GAAG,CAAC,oBAAoB,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,CAAC,WAAY,CAAC,CAAC;oBAE1F,sBAAO,YAAY,EAAC;;;;CACvB;AAPD,kDAOC;AAED,SAAsB,mBAAmB,CAAC,MAAqB,EAAE,OAAuB,EAAE,MAAc;;;;;;;oBACpG,4CAA4C;oBAC5C,MAAM,GAAG,MAAM,CAAC,WAAW,EAAE,CAAC;oBACf,qBAAM,MAAM,CAAC,KAAK,CAAC,EAAE,GAAG,EAAE,mDAA4C,MAAM,CAAE,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC,YAAY,CAAC,OAAO,CAAC,EAAA;;oBAA9H,MAAM,GAAG,SAAqH;oBAC9H,QAAQ,GAAG,MAAA,MAAA,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,GAAG,0CAAE,YAAY,0CAAE,OAAO,CAAC;oBAEpD,IAAI,CAAC,QAAQ,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC,EAAE;wBACpC,8BAA8B;wBAC9B,sBAAO,yBAAyB,CAAC,MAAM,EAAE,OAAO,EAAE,MAAM,CAAC,EAAC;qBAC7D;oBAED,sBAAO,MAAA,MAAA,QAAQ,CAAC,IAAI,CAAC,UAAC,CAAM,IAAK,OAAA,CAAC,CAAC,OAAO,EAAT,CAAS,CAAC,0CAAE,KAAK,mCAAI,QAAQ,CAAC,CAAC,CAAC,CAAC,KAAK,EAAC;;;;CAC3E;AAZD,kDAYC;AAED,SAAe,yBAAyB,CAAC,MAAqB,EAAE,OAAuB,EAAE,MAAc;;;;;;;oBACnG,4CAA4C;oBAC5C,MAAM,GAAG,MAAM,CAAC,WAAW,EAAE,CAAC;oBACf,qBAAM,MAAM,CAAC,KAAK,CAAC,EAAE,GAAG,EAAE,wDAAiD,MAAM,CAAE,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC,YAAY,CAAC,OAAO,CAAC,EAAA;;oBAAnI,MAAM,GAAG,SAA0H;oBACnI,SAAS,GAAG,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAG,MAAM,CAAC,CAAC;oBAC/B,YAAY,GAAuB,KAAK,CAAC,CAAC;oBAC9C,IAAI,CAAA,MAAA,MAAA,MAAA,SAAS,aAAT,SAAS,uBAAT,SAAS,CAAG,CAAC,CAAC,0CAAE,GAAG,0CAAE,aAAa,0CAAE,KAAK,MAAK,KAAK,CAAC,EAAE;wBACtD,YAAY,GAAG,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,aAAa,CAAC,KAAK,CAAC;qBACxD;oBAED,sBAAO,YAAY,EAAC;;;;CACvB;AAED,SAAsB,UAAU,CAAC,MAAqB,EAAE,OAAuB,EAAE,KAAa;;;;;;wBAE1E,qBAAM,MAAM,CAAC,KAAK,CAAC,EAAE,GAAG,EAAE,2DAAoD,KAAK,CAAE,EAAE,IAAI,EAAE,MAAM,EAAE,CAAC,CAAC,YAAY,CAAC,OAAO,CAAC,EAAA;;oBAAtI,OAAO,GAAG,SAA4H;oBAEtI,YAAY,GAAG,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAG,KAAK,CAAC,CAAC;oBAChC,OAAO,GAAa,EAAE,CAAC;oBAC7B,IAAI,MAAA,YAAY,aAAZ,YAAY,uBAAZ,YAAY,CAAG,CAAC,CAAC,0CAAE,kBAAkB,EAAE;wBACjC,IAAI,GAAG,YAAY,CAAC,CAAC,CAAC,CAAC,kBAAkB,CAAC,MAAM,CAAC,UAAC,CAAM,IAAK,OAAA,CAAC,CAAC,QAAQ,KAAK,MAAM,IAAI,CAAC,CAAC,YAAY,KAAK,sBAAsB,EAAlE,CAAkE,CAAC,CAAC;wBACvI,IAAI,CAAC,IAAI,CAAC,MAAM,EAAE;4BACd,MAAM,IAAI,KAAK,CAAC,2CAAoC,KAAK,OAAI,CAAC,CAAC;yBAClE;wBACD,OAAO,CAAC,IAAI,OAAZ,OAAO,EAAS,IAAI,CAAC,GAAG,CAAC,UAAC,CAAwB,IAAK,OAAA,CAAC,CAAC,SAAS,EAAX,CAAW,CAAC,EAAE;qBACxE;yBAAM;wBACH,MAAM,IAAI,KAAK,CAAC,2CAAoC,KAAK,OAAI,CAAC,CAAC;qBAClE;oBAED,sBAAO,OAAO,EAAC;;;;CAClB;AAjBD,gCAiBC"}

package/lib/commonjs/mol-plugin/behavior/static/state.js CHANGED Viewed

@@ -194,7 +194,7 @@ function Snapshots(ctx) {
     });
     commands_1.PluginCommands.State.Snapshots.Upload.subscribe(ctx, function (_a) {
         var name = _a.name, description = _a.description, playOnLoad = _a.playOnLoad, serverUrl = _a.serverUrl, params = _a.params;
-        return fetch((0, url_1.urlCombine)(serverUrl, "set?name=" + encodeURIComponent(name || '') + "&description=" + encodeURIComponent(description || '')), {
+        return fetch((0, url_1.urlCombine)(serverUrl, "set?name=".concat(encodeURIComponent(name || ''), "&description=").concat(encodeURIComponent(description || ''))), {
             method: 'POST',
             mode: 'cors',
             referrer: 'no-referrer',
@@ -226,11 +226,11 @@ function Snapshots(ctx) {
             return (0, tslib_1.__generator)(this, function (_b) {
                 switch (_b.label) {
                     case 0:
-                        filename = "mol-star_state_" + (name || (0, date_1.getFormattedTime)()) + "." + (type === 'json' ? 'molj' : 'molx');
+                        filename = "mol-star_state_".concat((name || (0, date_1.getFormattedTime)()), ".").concat(type === 'json' ? 'molj' : 'molx');
                         return [4 /*yield*/, ctx.managers.snapshot.serialize({ type: type, params: params })];
                     case 1:
                         data = _b.sent();
-                        (0, download_1.download)(data, "" + filename);
+                        (0, download_1.download)(data, "".concat(filename));
                         return [2 /*return*/];
                 }
             });
@@ -249,7 +249,7 @@ function Snapshots(ctx) {
                     case 0: return [4 /*yield*/, ctx.runTask(ctx.fetch({ url: url, type: 'binary' }))];
                     case 1:
                         data = _b.sent();
-                        return [2 /*return*/, ctx.managers.snapshot.open(new File([data], "state." + type))];
+                        return [2 /*return*/, ctx.managers.snapshot.open(new File([data], "state.".concat(type)))];
                 }
             });
         });

package/lib/commonjs/mol-plugin/behavior/static/state.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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