molstar 2.3.3 → 2.3.8

package/lib/commonjs/extensions/anvil/representation.d.ts

@@ -19,7 +19,7 @@ declare const BilayerPlanesParams: {
     ignoreLight: PD.BooleanParam;
     xrayShaded: PD.BooleanParam;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type BilayerPlanesParams = typeof BilayerPlanesParams;
 export declare type BilayerPlanesProps = PD.Values<BilayerPlanesParams>;
@@ -31,7 +31,7 @@ declare const BilayerRimsParams: {
     radiusFactor: PD.Numeric;
     sizeFactor: PD.Numeric;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
 };
 export declare type BilayerRimsParams = typeof BilayerRimsParams;
 export declare type BilayerRimsProps = PD.Values<BilayerRimsParams>;
@@ -44,7 +44,7 @@ export declare const MembraneOrientationParams: {
     radiusFactor: PD.Numeric;
     sizeFactor: PD.Numeric;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     sectorOpacity: PD.Numeric;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -63,7 +63,7 @@ export declare function getMembraneOrientationParams(ctx: ThemeRegistryContext,
     radiusFactor: PD.Numeric;
     sizeFactor: PD.Numeric;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     sectorOpacity: PD.Numeric;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;
@@ -82,7 +82,7 @@ export declare const MembraneOrientationRepresentationProvider: StructureReprese
     radiusFactor: PD.Numeric;
     sizeFactor: PD.Numeric;
     alpha: PD.Numeric;
-    quality: PD.Select<"custom" | "auto" | "highest" | "higher" | "high" | "medium" | "low" | "lower" | "lowest">;
+    quality: PD.Select<"auto" | "medium" | "high" | "low" | "custom" | "highest" | "higher" | "lower" | "lowest">;
     sectorOpacity: PD.Numeric;
     doubleSided: PD.BooleanParam;
     flipSided: PD.BooleanParam;

package/lib/commonjs/extensions/anvil/representation.js

@@ -60,7 +60,7 @@ exports.MembraneOrientationRepresentationProvider = (0, representation_2.Structu
     }
 });
 function membraneLabel(data) {
-    return (0, label_1.lociLabel)(structure_1.Structure.Loci(data)) + " | Membrane Orientation";
+    return "".concat((0, label_1.lociLabel)(structure_1.Structure.Loci(data)), " | Membrane Orientation");
 }
 function getBilayerRims(ctx, data, props, shape) {
     var _a = prop_1.MembraneOrientationProvider.get(data).value, p1 = _a.planePoint1, p2 = _a.planePoint2, centroid = _a.centroid, radius = _a.radius;

package/lib/commonjs/extensions/anvil/representation.js.map

@@ -1 +1 @@
-{"version":3,"file":"representation.js","sourceRoot":"","sources":["../../../../src/extensions/anvil/representation.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;;AAEH,oEAAwE;AACxE,gEAA2D;AAC3D,gEAAkH;AAClH,uDAAsD;AACtD,0EAAwJ;AAGxJ,sEAA0E;AAC1E,+CAA8C;AAE9C,4DAA2D;AAC3D,yDAAwD;AACxD,4EAA0E;AAC1E,yDAAwD;AACxD,+DAAuE;AACvE,yEAAuE;AACvE,+BAAqD;AACrD,8DAA6D;AAC7D,+CAAkD;AAClD,oDAAwD;AAGxD,IAAM,YAAY,GAAG;IACjB,KAAK,EAAE,kCAAE,CAAC,KAAK,CAAC,kBAAU,CAAC,SAAS,CAAC;IACrC,YAAY,EAAE,kCAAE,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,IAAI,EAAE,EAAE,EAAE,WAAW,EAAE,wCAAwC,EAAE,CAAC;CAC/H,CAAC;AAEF,IAAM,mBAAmB,yEAClB,WAAI,CAAC,MAAM,GACX,YAAY,KACf,aAAa,EAAE,kCAAE,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,GACjE,CAAC;AAIF,IAAM,iBAAiB,yEAChB,aAAK,CAAC,MAAM,GACZ,YAAY,KACf,mBAAmB,EAAE,kCAAE,CAAC,OAAO,CAAC,IAAI,CAAC,EACrC,SAAS,EAAE,kCAAE,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,EAC9D,WAAW,EAAE,kCAAE,CAAC,OAAO,CAAC,IAAI,CAAC,GAChC,CAAC;AAIF,IAAM,0BAA0B,GAAG;IAC/B,gBAAgB,EAAE,UAAC,GAA0B,EAAE,SAA+E,IAAK,OAAA,IAAA,oCAAmB,EAAC,gBAAgB,EAAE,WAAI,CAAC,KAAK,EAAE,EAAE,WAAW,EAAE,UAAA,CAAC,IAAI,OAAA,iDAAM,CAAC,KAAE,aAAa,EAAE,6BAAa,CAAC,YAAY,IAAG,EAArD,CAAqD,EAAE,WAAW,EAAE,UAAA,CAAC,IAAI,OAAA,iDAAM,CAAC,KAAE,KAAK,EAAE,CAAC,CAAC,aAAa,EAAE,WAAW,EAAE,IAAI,EAAE,WAAW,EAAE,KAAK,IAAG,EAAzE,CAAyE,EAAE,CAAC,EAA3N,CAA2N;IAC9V,cAAc,EAAE,UAAC,GAA0B,EAAE,SAA6E,IAAK,OAAA,IAAA,oCAAmB,EAAC,cAAc,EAAE,aAAK,CAAC,KAAK,EAAE,EAAE,WAAW,EAAE,UAAA,CAAC,IAAI,OAAA,iDAAM,CAAC,KAAE,aAAa,EAAE,6BAAa,CAAC,YAAY,IAAG,EAArD,CAAqD,EAAE,CAAC,EAA7H,CAA6H;CAC/P,CAAC;AAEW,QAAA,yBAAyB,yEAC/B,mBAAmB,GACnB,iBAAiB,KACpB,OAAO,EAAE,kCAAE,CAAC,WAAW,CAAC,CAAC,gBAAgB,EAAE,cAAc,CAAC,EAAE,kCAAE,CAAC,eAAe,CAAC,0BAA0B,CAAC,CAAC,IAC7G;AAIF,SAAgB,4BAA4B,CAAC,GAAyB,EAAE,SAAoB;IACxF,OAAO,kCAAE,CAAC,KAAK,CAAC,iCAAyB,CAAC,CAAC;AAC/C,CAAC;AAFD,oEAEC;AAGD,SAAgB,iCAAiC,CAAC,GAA0B,EAAE,SAA2E;IACrJ,OAAO,+BAAc,CAAC,WAAW,CAAC,sBAAsB,EAAE,GAAG,EAAE,SAAS,EAAE,oDAAmC,EAAE,0BAAiG,CAAC,CAAC;AACtN,CAAC;AAFD,8EAEC;AAEY,QAAA,yCAAyC,GAAG,IAAA,gDAA+B,EAAC;IACrF,IAAI,EAAE,sBAAsB;IAC5B,KAAK,EAAE,sBAAsB;IAC7B,WAAW,EAAE,yDAAyD;IACtE,OAAO,EAAE,iCAAiC;IAC1C,SAAS,EAAE,4BAA4B;IACvC,aAAa,EAAE,kCAAE,CAAC,gBAAgB,CAAC,iCAAyB,CAAC;IAC7D,iBAAiB,EAAE,EAAE,IAAI,EAAE,aAAa,EAAE;IAC1C,gBAAgB,EAAE,EAAE,IAAI,EAAE,aAAa,EAAE;IACzC,YAAY,EAAE,UAAC,SAAoB,IAAK,OAAA,SAAS,CAAC,YAAY,GAAG,CAAC,EAA1B,CAA0B;IAClE,sBAAsB,EAAE;QACpB,MAAM,EAAE,UAAC,GAA2B,EAAE,SAAoB,IAAK,OAAA,kCAA2B,CAAC,MAAM,CAAC,GAAG,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,IAAI,CAAC,EAAhE,CAAgE;QAC/H,MAAM,EAAE,UAAC,IAAI,IAAK,OAAA,kCAA2B,CAAC,GAAG,CAAC,IAAI,EAAE,KAAK,CAAC,EAA5C,CAA4C;KACjE;CACJ,CAAC,CAAC;AAEH,SAAS,aAAa,CAAC,IAAe;IAClC,OAAU,IAAA,iBAAS,EAAC,qBAAS,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,4BAAyB,CAAC;AACvE,CAAC;AAED,SAAS,cAAc,CAAC,GAAmB,EAAE,IAAe,EAAE,KAAuB,EAAE,KAAoB;IACjG,IAAA,KAAyD,kCAA2B,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,KAAM,EAAtF,EAAE,iBAAA,EAAe,EAAE,iBAAA,EAAE,QAAQ,cAAA,EAAE,MAAM,YAAiD,CAAC;IAC5G,IAAM,YAAY,GAAG,KAAK,CAAC,YAAY,GAAG,MAAM,CAAC;IACjD,IAAM,OAAO,GAAG,4BAAY,CAAC,MAAM,CAAC,GAAG,EAAE,EAAE,EAAE,KAAK,aAAL,KAAK,uBAAL,KAAK,CAAE,QAAQ,CAAC,CAAC;IAC9D,cAAc,CAAC,OAAO,EAAE,EAAE,EAAE,QAAQ,EAAE,YAAY,EAAE,KAAK,CAAC,CAAC;IAC3D,cAAc,CAAC,OAAO,EAAE,EAAE,EAAE,QAAQ,EAAE,YAAY,EAAE,KAAK,CAAC,CAAC;IAC3D,OAAO,aAAK,CAAC,MAAM,CAAC,cAAc,EAAE,IAAI,EAAE,OAAO,CAAC,QAAQ,EAAE,EAAE,cAAM,OAAA,KAAK,CAAC,KAAK,EAAX,CAAW,EAAE,cAAM,OAAA,KAAK,CAAC,SAAS,EAAf,CAAe,EAAE,cAAM,OAAA,aAAa,CAAC,IAAI,CAAC,EAAnB,CAAmB,CAAC,CAAC;AACvI,CAAC;AAED,SAAS,cAAc,CAAC,OAAqB,EAAE,CAAO,EAAE,QAAc,EAAE,MAAc,EAAE,KAAuB,EAAE,KAAoB;IACjI,IAAM,MAAM,GAAG,SAAS,CAAC,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,CAAC;IACtC,IAAA,OAAO,GAAe,MAAM,QAArB,EAAE,QAAQ,GAAK,MAAM,SAAX,CAAY;IACrC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,IAAI,CAAC,EAAE;QACjD,IAAI,KAAK,CAAC,WAAW,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC;YAAE,SAAS,CAAC,yCAAyC;QACzF,IAAM,KAAK,GAAG,OAAO,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QAC7B,IAAM,GAAG,GAAG,OAAO,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC;QAC/B,IAAM,MAAM,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAC;QAC/B,IAAM,MAAM,GAAG,QAAQ,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC;QACnC,IAAM,MAAM,GAAG,QAAQ,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC;QACnC,IAAM,IAAI,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC;QAC3B,IAAM,IAAI,GAAG,QAAQ,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC;QAC/B,IAAM,IAAI,GAAG,QAAQ,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC;QAC/B,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC;KAC5D;AACL,CAAC;AAED,IAAM,MAAM,GAAG,IAAA,qBAAI,GAAE,CAAC;AACtB,IAAM,IAAI,GAAG,IAAA,qBAAI,GAAE,CAAC;AACpB,SAAS,SAAS,CAAC,CAAO,EAAE,QAAc,EAAE,MAAc;IACtD,IAAI,qBAAI,CAAC,GAAG,CAAC,qBAAI,CAAC,KAAK,EAAE,qBAAI,CAAC,GAAG,CAAC,IAAI,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAC,KAAK,CAAC,EAAE;QACzD,qBAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,QAAQ,EAAE,qBAAI,CAAC,KAAK,CAAC,CAAC;KAClD;SAAM;QACH,qBAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,QAAQ,EAAE,qBAAI,CAAC,KAAK,CAAC,CAAC;KAClD;IACD,qBAAI,CAAC,cAAc,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;IAC/B,qBAAI,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,qBAAI,CAAC,MAAM,CAAC,CAAC;IAEtC,IAAM,MAAM,GAAG,IAAA,eAAM,EAAC,EAAE,MAAM,QAAA,EAAE,QAAQ,EAAE,EAAE,EAAE,CAAC,CAAC;IAChD,OAAO,IAAA,8BAAkB,EAAC,MAAM,EAAE,MAAM,CAAC,CAAC;AAC9C,CAAC;AAED,SAAS,gBAAgB,CAAC,GAAmB,EAAE,IAAe,EAAE,KAAyB,EAAE,KAAmB;IACpG,IAAA,KAAyD,kCAA2B,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,KAAM,EAAtF,EAAE,iBAAA,EAAe,EAAE,iBAAA,EAAE,QAAQ,cAAA,EAAE,MAAM,YAAiD,CAAC;IAC5G,IAAM,KAAK,GAAG,0BAAW,CAAC,WAAW,CAAC,GAAG,EAAE,EAAE,EAAE,KAAK,IAAI,KAAK,CAAC,QAAQ,CAAC,CAAC;IACxE,IAAM,YAAY,GAAG,KAAK,CAAC,YAAY,GAAG,MAAM,CAAC;IACjD,aAAa,CAAC,KAAK,EAAE,EAAE,EAAE,QAAQ,EAAE,YAAY,CAAC,CAAC;IACjD,aAAa,CAAC,KAAK,EAAE,EAAE,EAAE,QAAQ,EAAE,YAAY,CAAC,CAAC;IACjD,OAAO,aAAK,CAAC,MAAM,CAAC,gBAAgB,EAAE,IAAI,EAAE,0BAAW,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE,cAAM,OAAA,KAAK,CAAC,KAAK,EAAX,CAAW,EAAE,cAAM,OAAA,CAAC,EAAD,CAAC,EAAE,cAAM,OAAA,aAAa,CAAC,IAAI,CAAC,EAAnB,CAAmB,CAAC,CAAC;AACnI,CAAC;AAED,SAAS,aAAa,CAAC,KAAwB,EAAE,CAAO,EAAE,QAAc,EAAE,MAAc;IACpF,IAAM,MAAM,GAAG,SAAS,CAAC,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,CAAC;IAC9C,KAAK,CAAC,YAAY,GAAG,CAAC,CAAC;IACvB,0BAAW,CAAC,YAAY,CAAC,KAAK,EAAE,qBAAI,CAAC,EAAE,EAAE,MAAM,CAAC,CAAC;IACjD,0BAAW,CAAC,mBAAmB,CAAC,KAAK,EAAE,qBAAI,CAAC,EAAE,EAAE,MAAM,CAAC,CAAC;AAC5D,CAAC"}
+{"version":3,"file":"representation.js","sourceRoot":"","sources":["../../../../src/extensions/anvil/representation.ts"],"names":[],"mappings":";AAAA;;;;;GAKG;;;;AAEH,oEAAwE;AACxE,gEAA2D;AAC3D,gEAAkH;AAClH,uDAAsD;AACtD,0EAAwJ;AAGxJ,sEAA0E;AAC1E,+CAA8C;AAE9C,4DAA2D;AAC3D,yDAAwD;AACxD,4EAA0E;AAC1E,yDAAwD;AACxD,+DAAuE;AACvE,yEAAuE;AACvE,+BAAqD;AACrD,8DAA6D;AAC7D,+CAAkD;AAClD,oDAAwD;AAGxD,IAAM,YAAY,GAAG;IACjB,KAAK,EAAE,kCAAE,CAAC,KAAK,CAAC,kBAAU,CAAC,SAAS,CAAC;IACrC,YAAY,EAAE,kCAAE,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,GAAG,EAAE,IAAI,EAAE,IAAI,EAAE,EAAE,EAAE,WAAW,EAAE,wCAAwC,EAAE,CAAC;CAC/H,CAAC;AAEF,IAAM,mBAAmB,yEAClB,WAAI,CAAC,MAAM,GACX,YAAY,KACf,aAAa,EAAE,kCAAE,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,GAAG,EAAE,CAAC,EAAE,GAAG,EAAE,CAAC,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,GACjE,CAAC;AAIF,IAAM,iBAAiB,yEAChB,aAAK,CAAC,MAAM,GACZ,YAAY,KACf,mBAAmB,EAAE,kCAAE,CAAC,OAAO,CAAC,IAAI,CAAC,EACrC,SAAS,EAAE,kCAAE,CAAC,OAAO,CAAC,GAAG,EAAE,EAAE,GAAG,EAAE,IAAI,EAAE,GAAG,EAAE,EAAE,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,EAC9D,WAAW,EAAE,kCAAE,CAAC,OAAO,CAAC,IAAI,CAAC,GAChC,CAAC;AAIF,IAAM,0BAA0B,GAAG;IAC/B,gBAAgB,EAAE,UAAC,GAA0B,EAAE,SAA+E,IAAK,OAAA,IAAA,oCAAmB,EAAC,gBAAgB,EAAE,WAAI,CAAC,KAAK,EAAE,EAAE,WAAW,EAAE,UAAA,CAAC,IAAI,OAAA,iDAAM,CAAC,KAAE,aAAa,EAAE,6BAAa,CAAC,YAAY,IAAG,EAArD,CAAqD,EAAE,WAAW,EAAE,UAAA,CAAC,IAAI,OAAA,iDAAM,CAAC,KAAE,KAAK,EAAE,CAAC,CAAC,aAAa,EAAE,WAAW,EAAE,IAAI,EAAE,WAAW,EAAE,KAAK,IAAG,EAAzE,CAAyE,EAAE,CAAC,EAA3N,CAA2N;IAC9V,cAAc,EAAE,UAAC,GAA0B,EAAE,SAA6E,IAAK,OAAA,IAAA,oCAAmB,EAAC,cAAc,EAAE,aAAK,CAAC,KAAK,EAAE,EAAE,WAAW,EAAE,UAAA,CAAC,IAAI,OAAA,iDAAM,CAAC,KAAE,aAAa,EAAE,6BAAa,CAAC,YAAY,IAAG,EAArD,CAAqD,EAAE,CAAC,EAA7H,CAA6H;CAC/P,CAAC;AAEW,QAAA,yBAAyB,yEAC/B,mBAAmB,GACnB,iBAAiB,KACpB,OAAO,EAAE,kCAAE,CAAC,WAAW,CAAC,CAAC,gBAAgB,EAAE,cAAc,CAAC,EAAE,kCAAE,CAAC,eAAe,CAAC,0BAA0B,CAAC,CAAC,IAC7G;AAIF,SAAgB,4BAA4B,CAAC,GAAyB,EAAE,SAAoB;IACxF,OAAO,kCAAE,CAAC,KAAK,CAAC,iCAAyB,CAAC,CAAC;AAC/C,CAAC;AAFD,oEAEC;AAGD,SAAgB,iCAAiC,CAAC,GAA0B,EAAE,SAA2E;IACrJ,OAAO,+BAAc,CAAC,WAAW,CAAC,sBAAsB,EAAE,GAAG,EAAE,SAAS,EAAE,oDAAmC,EAAE,0BAAiG,CAAC,CAAC;AACtN,CAAC;AAFD,8EAEC;AAEY,QAAA,yCAAyC,GAAG,IAAA,gDAA+B,EAAC;IACrF,IAAI,EAAE,sBAAsB;IAC5B,KAAK,EAAE,sBAAsB;IAC7B,WAAW,EAAE,yDAAyD;IACtE,OAAO,EAAE,iCAAiC;IAC1C,SAAS,EAAE,4BAA4B;IACvC,aAAa,EAAE,kCAAE,CAAC,gBAAgB,CAAC,iCAAyB,CAAC;IAC7D,iBAAiB,EAAE,EAAE,IAAI,EAAE,aAAa,EAAE;IAC1C,gBAAgB,EAAE,EAAE,IAAI,EAAE,aAAa,EAAE;IACzC,YAAY,EAAE,UAAC,SAAoB,IAAK,OAAA,SAAS,CAAC,YAAY,GAAG,CAAC,EAA1B,CAA0B;IAClE,sBAAsB,EAAE;QACpB,MAAM,EAAE,UAAC,GAA2B,EAAE,SAAoB,IAAK,OAAA,kCAA2B,CAAC,MAAM,CAAC,GAAG,EAAE,SAAS,EAAE,KAAK,CAAC,EAAE,IAAI,CAAC,EAAhE,CAAgE;QAC/H,MAAM,EAAE,UAAC,IAAI,IAAK,OAAA,kCAA2B,CAAC,GAAG,CAAC,IAAI,EAAE,KAAK,CAAC,EAA5C,CAA4C;KACjE;CACJ,CAAC,CAAC;AAEH,SAAS,aAAa,CAAC,IAAe;IAClC,OAAO,UAAG,IAAA,iBAAS,EAAC,qBAAS,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,4BAAyB,CAAC;AACvE,CAAC;AAED,SAAS,cAAc,CAAC,GAAmB,EAAE,IAAe,EAAE,KAAuB,EAAE,KAAoB;IACjG,IAAA,KAAyD,kCAA2B,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,KAAM,EAAtF,EAAE,iBAAA,EAAe,EAAE,iBAAA,EAAE,QAAQ,cAAA,EAAE,MAAM,YAAiD,CAAC;IAC5G,IAAM,YAAY,GAAG,KAAK,CAAC,YAAY,GAAG,MAAM,CAAC;IACjD,IAAM,OAAO,GAAG,4BAAY,CAAC,MAAM,CAAC,GAAG,EAAE,EAAE,EAAE,KAAK,aAAL,KAAK,uBAAL,KAAK,CAAE,QAAQ,CAAC,CAAC;IAC9D,cAAc,CAAC,OAAO,EAAE,EAAE,EAAE,QAAQ,EAAE,YAAY,EAAE,KAAK,CAAC,CAAC;IAC3D,cAAc,CAAC,OAAO,EAAE,EAAE,EAAE,QAAQ,EAAE,YAAY,EAAE,KAAK,CAAC,CAAC;IAC3D,OAAO,aAAK,CAAC,MAAM,CAAC,cAAc,EAAE,IAAI,EAAE,OAAO,CAAC,QAAQ,EAAE,EAAE,cAAM,OAAA,KAAK,CAAC,KAAK,EAAX,CAAW,EAAE,cAAM,OAAA,KAAK,CAAC,SAAS,EAAf,CAAe,EAAE,cAAM,OAAA,aAAa,CAAC,IAAI,CAAC,EAAnB,CAAmB,CAAC,CAAC;AACvI,CAAC;AAED,SAAS,cAAc,CAAC,OAAqB,EAAE,CAAO,EAAE,QAAc,EAAE,MAAc,EAAE,KAAuB,EAAE,KAAoB;IACjI,IAAM,MAAM,GAAG,SAAS,CAAC,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,CAAC;IACtC,IAAA,OAAO,GAAe,MAAM,QAArB,EAAE,QAAQ,GAAK,MAAM,SAAX,CAAY;IACrC,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,EAAE,GAAG,OAAO,CAAC,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,CAAC,IAAI,CAAC,EAAE;QACjD,IAAI,KAAK,CAAC,WAAW,IAAI,CAAC,GAAG,CAAC,KAAK,CAAC;YAAE,SAAS,CAAC,yCAAyC;QACzF,IAAM,KAAK,GAAG,OAAO,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC;QAC7B,IAAM,GAAG,GAAG,OAAO,CAAC,CAAC,GAAG,CAAC,CAAC,GAAG,CAAC,CAAC;QAC/B,IAAM,MAAM,GAAG,QAAQ,CAAC,KAAK,CAAC,CAAC;QAC/B,IAAM,MAAM,GAAG,QAAQ,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC;QACnC,IAAM,MAAM,GAAG,QAAQ,CAAC,KAAK,GAAG,CAAC,CAAC,CAAC;QACnC,IAAM,IAAI,GAAG,QAAQ,CAAC,GAAG,CAAC,CAAC;QAC3B,IAAM,IAAI,GAAG,QAAQ,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC;QAC/B,IAAM,IAAI,GAAG,QAAQ,CAAC,GAAG,GAAG,CAAC,CAAC,CAAC;QAC/B,OAAO,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,MAAM,EAAE,IAAI,EAAE,IAAI,EAAE,IAAI,EAAE,CAAC,CAAC,CAAC;KAC5D;AACL,CAAC;AAED,IAAM,MAAM,GAAG,IAAA,qBAAI,GAAE,CAAC;AACtB,IAAM,IAAI,GAAG,IAAA,qBAAI,GAAE,CAAC;AACpB,SAAS,SAAS,CAAC,CAAO,EAAE,QAAc,EAAE,MAAc;IACtD,IAAI,qBAAI,CAAC,GAAG,CAAC,qBAAI,CAAC,KAAK,EAAE,qBAAI,CAAC,GAAG,CAAC,IAAI,EAAE,CAAC,EAAE,QAAQ,CAAC,CAAC,KAAK,CAAC,EAAE;QACzD,qBAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,QAAQ,EAAE,qBAAI,CAAC,KAAK,CAAC,CAAC;KAClD;SAAM;QACH,qBAAI,CAAC,QAAQ,CAAC,MAAM,EAAE,CAAC,EAAE,QAAQ,EAAE,qBAAI,CAAC,KAAK,CAAC,CAAC;KAClD;IACD,qBAAI,CAAC,cAAc,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;IAC/B,qBAAI,CAAC,GAAG,CAAC,MAAM,EAAE,MAAM,EAAE,qBAAI,CAAC,MAAM,CAAC,CAAC;IAEtC,IAAM,MAAM,GAAG,IAAA,eAAM,EAAC,EAAE,MAAM,QAAA,EAAE,QAAQ,EAAE,EAAE,EAAE,CAAC,CAAC;IAChD,OAAO,IAAA,8BAAkB,EAAC,MAAM,EAAE,MAAM,CAAC,CAAC;AAC9C,CAAC;AAED,SAAS,gBAAgB,CAAC,GAAmB,EAAE,IAAe,EAAE,KAAyB,EAAE,KAAmB;IACpG,IAAA,KAAyD,kCAA2B,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC,KAAM,EAAtF,EAAE,iBAAA,EAAe,EAAE,iBAAA,EAAE,QAAQ,cAAA,EAAE,MAAM,YAAiD,CAAC;IAC5G,IAAM,KAAK,GAAG,0BAAW,CAAC,WAAW,CAAC,GAAG,EAAE,EAAE,EAAE,KAAK,IAAI,KAAK,CAAC,QAAQ,CAAC,CAAC;IACxE,IAAM,YAAY,GAAG,KAAK,CAAC,YAAY,GAAG,MAAM,CAAC;IACjD,aAAa,CAAC,KAAK,EAAE,EAAE,EAAE,QAAQ,EAAE,YAAY,CAAC,CAAC;IACjD,aAAa,CAAC,KAAK,EAAE,EAAE,EAAE,QAAQ,EAAE,YAAY,CAAC,CAAC;IACjD,OAAO,aAAK,CAAC,MAAM,CAAC,gBAAgB,EAAE,IAAI,EAAE,0BAAW,CAAC,OAAO,CAAC,KAAK,CAAC,EAAE,cAAM,OAAA,KAAK,CAAC,KAAK,EAAX,CAAW,EAAE,cAAM,OAAA,CAAC,EAAD,CAAC,EAAE,cAAM,OAAA,aAAa,CAAC,IAAI,CAAC,EAAnB,CAAmB,CAAC,CAAC;AACnI,CAAC;AAED,SAAS,aAAa,CAAC,KAAwB,EAAE,CAAO,EAAE,QAAc,EAAE,MAAc;IACpF,IAAM,MAAM,GAAG,SAAS,CAAC,CAAC,EAAE,QAAQ,EAAE,MAAM,CAAC,CAAC;IAC9C,KAAK,CAAC,YAAY,GAAG,CAAC,CAAC;IACvB,0BAAW,CAAC,YAAY,CAAC,KAAK,EAAE,qBAAI,CAAC,EAAE,EAAE,MAAM,CAAC,CAAC;IACjD,0BAAW,CAAC,mBAAmB,CAAC,KAAK,EAAE,qBAAI,CAAC,EAAE,EAAE,MAAM,CAAC,CAAC;AAC5D,CAAC"}

package/lib/commonjs/extensions/cellpack/color/generate.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2020-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/extensions/cellpack/color/generate.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2020-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/extensions/cellpack/color/provided.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/extensions/cellpack/color/provided.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/extensions/cellpack/curve.d.ts

@@ -1,7 +1,7 @@
 /**
- * Copyright (c) 2019 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * @author Ludovic Autin <autin@scripps.edu>
+ * @author Ludovic Autin <ludovic.autin@gmail.com>
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 import { Mat4 } from '../../mol-math/linear-algebra';

package/lib/commonjs/extensions/cellpack/curve.js

@@ -1,8 +1,8 @@
 "use strict";
 /**
- * Copyright (c) 2019 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
- * @author Ludovic Autin <autin@scripps.edu>
+ * @author Ludovic Autin <ludovic.autin@gmail.com>
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */
 Object.defineProperty(exports, "__esModule", { value: true });

package/lib/commonjs/extensions/cellpack/data.d.ts

@@ -12,13 +12,26 @@ export interface CellPacking {
     name: string;
     location: 'surface' | 'interior' | 'cytoplasme';
     ingredients: Packing['ingredients'];
+    compartment?: CellCompartment;
+}
+export interface CellCompartment {
+    filename?: string;
+    geom_type?: 'raw' | 'file' | 'sphere' | 'mb' | 'None';
+    compartment_primitives?: CompartmentPrimitives;
 }
 export interface Cell {
     recipe: Recipe;
+    options?: RecipeOptions;
     cytoplasme?: Packing;
     compartments?: {
         [key: string]: Compartment;
     };
+    mapping_ids?: {
+        [key: number]: [number, string];
+    };
+}
+export interface RecipeOptions {
+    resultfile?: string;
 }
 export interface Recipe {
     setupfile: string;
@@ -29,6 +42,23 @@ export interface Recipe {
 export interface Compartment {
     surface?: Packing;
     interior?: Packing;
+    geom?: unknown;
+    geom_type?: 'raw' | 'file' | 'sphere' | 'mb' | 'None';
+    mb?: CompartmentPrimitives;
+}
+export declare const enum CompartmentPrimitiveType {
+    MetaBall = 0,
+    Sphere = 1,
+    Cube = 2,
+    Cylinder = 3,
+    Cone = 4,
+    Plane = 5,
+    None = 6
+}
+export interface CompartmentPrimitives {
+    positions?: number[];
+    radii?: number[];
+    types?: CompartmentPrimitiveType[];
 }
 export interface Packing {
     ingredients: {
@@ -56,11 +86,13 @@ export interface Ingredient {
     [curveX: string]: unknown;
     /** the orientation in the membrane */
     principalAxis?: Vec3;
+    principalVector?: Vec3;
     /** offset along membrane */
     offset?: Vec3;
     ingtype?: string;
     color?: Vec3;
     confidence?: number;
+    Type?: string;
 }
 export interface IngredientSource {
     pdb: string;

package/lib/commonjs/extensions/cellpack/index.d.ts

@@ -1,5 +1,5 @@
 /**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/extensions/cellpack/index.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * Copyright (c) 2020 mol* contributors, licensed under MIT, See LICENSE file for more info.
+ * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
  */

package/lib/commonjs/extensions/cellpack/model.d.ts

@@ -2,6 +2,7 @@
  * Copyright (c) 2019-2021 mol* contributors, licensed under MIT, See LICENSE file for more info.
  *
  * @author Alexander Rose <alexander.rose@weirdbyte.de>
+ * @author Ludovic Autin <ludovic.autin@gmail.com>
  */
 import { StateAction } from '../../mol-state';
 import { PluginContext } from '../../mol-plugin/context';
@@ -16,12 +17,13 @@ import { Color } from '../../mol-util/color';
 export declare function createStructureFromCellPack(plugin: PluginContext, packing: CellPacking, baseUrl: string, ingredientFiles: IngredientFiles): Task<{
     structure: Structure;
     assets: Asset.Wrapper<import("../../mol-util/data-source").DataType>[];
-    colors: Color[] | undefined;
+    colors: Color[];
 }>;
 export declare const LoadCellPackModel: StateAction<PSO.Root, void, PD.Normalize<{
-    source: PD.NamedParams<Asset.File | null, "file"> | PD.NamedParams<"InfluenzaModel2.json" | "blood_hiv_immature_inside.json" | "HIV_immature_model.json" | "BloodHIV1.0_mixed_fixed_nc1.cpr" | "HIV-1_0.1.6-8_mixed_radii_pdb.cpr" | "influenza_model1.json" | "ExosomeModel.json" | "Mycoplasma1.5_mixed_pdb_fixed.cpr" | "MycoplasmaModel.json", "id">;
+    source: PD.NamedParams<"InfluenzaModel2.json" | "blood_hiv_immature_inside.json" | "HIV_immature_model.json" | "Blood_HIV.json" | "HIV-1_0.1.6-8_mixed_radii_pdb.json" | "influenza_model1.json" | "ExosomeModel.json" | "MycoplasmaGenitalium.json", "id"> | PD.NamedParams<Asset.File | null, "file">;
     baseUrl: string;
-    membrane: boolean;
+    results: Asset.File | null;
+    membrane: string;
     ingredients: Asset.File[] | null;
     preset: PD.Normalize<{
         traceOnly: any;